Citrus Sinensis ID: 005123
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NLV4 | 647 | Flowering time control pr | yes | no | 0.855 | 0.942 | 0.683 | 0.0 | |
| Q9C0J8 | 1336 | pre-mRNA 3' end processin | yes | no | 0.806 | 0.430 | 0.424 | 1e-132 | |
| Q8K4P0 | 1330 | pre-mRNA 3' end processin | yes | no | 0.645 | 0.345 | 0.470 | 1e-132 | |
| Q7RY68 | 660 | Polyadenylation factor su | N/A | no | 0.513 | 0.554 | 0.437 | 2e-96 | |
| Q9UTN4 | 509 | Polyadenylation factor su | yes | no | 0.636 | 0.891 | 0.390 | 1e-94 | |
| P0CS47 | 713 | Polyadenylation factor su | N/A | no | 0.579 | 0.579 | 0.402 | 9e-93 | |
| P0CS46 | 712 | Polyadenylation factor su | yes | no | 0.516 | 0.516 | 0.429 | 7e-92 | |
| Q4I7X1 | 612 | Polyadenylation factor su | yes | no | 0.455 | 0.531 | 0.450 | 4e-90 | |
| Q2TZG4 | 610 | Polyadenylation factor su | yes | no | 0.516 | 0.603 | 0.393 | 4e-87 | |
| Q6BVZ3 | 504 | Polyadenylation factor su | yes | no | 0.583 | 0.825 | 0.379 | 1e-81 |
| >sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1 | Back alignment and function desciption |
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Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/680 (68%), Positives = 505/680 (74%), Gaps = 70/680 (10%)
Query: 17 GGGDHFNRGPQPPQPPGPPMMRQPSASSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKL 76
GGD +RG Q PQPP MMRQ SASS+ +NP ++HH PS P +D + DSF AKRMRK
Sbjct: 3 AGGD-MHRGSQMPQPP---MMRQSSASSTNINP-DYHH-PSGP-FDPNVDSFGAKRMRKH 55
Query: 77 TQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFV 136
TQRRAVDYTSTVVRY+Q R WQRDSRDRT LQ TPAAA+DMLPTVAY+DNPSTSFAAKFV
Sbjct: 56 TQRRAVDYTSTVVRYIQARTWQRDSRDRTTLQPTPAAAVDMLPTVAYSDNPSTSFAAKFV 115
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 196
H SLNKNRCSINRVLWTP+GRRLITGSQSGEFTLWNGQSFNFEMILQAHD IRSMVWSH
Sbjct: 116 HASLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSH 175
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
N+N+MVSGDDGG +KYWQNNMNNVKANK+AHKES+RDLSFC+TDLKFCSCSDDTTVKVWD
Sbjct: 176 NENYMVSGDDGGTLKYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWD 235
Query: 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 316
F +C +E SLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWD +SGRELCS HGHKN+VL
Sbjct: 236 FTKCVDESSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVL 295
Query: 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376
VKWNQNGNW+LTASKDQIIKLYDIR MKEL+SFRGH KDVT+LAWHP HEEYFVSGS D
Sbjct: 296 SVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSD 355
Query: 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGDTARD 434
GSI HW+VGHE PQ+EI N HDN+VWDLAWHPIGYLLC SNDHTTKFWCRNRP D RD
Sbjct: 356 GSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPADNPRD 415
Query: 435 KFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIP 494
+ QNQGY EQ GR P NF E PG F PGLTRNEGTIPG+G+AMP
Sbjct: 416 V--LMQNQGYNEQG---FGRQPDNFQPSEASPIPGAFVPGLTRNEGTIPGIGIAMP---- 466
Query: 495 SFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMP 554
FD+S+QG+ KQPL + P G Q QQHQGHPQQM
Sbjct: 467 -FDASSQGDHKQPLPGSMALGAPP----LPPGPHPSLLGSGQQQGYQQQQQHQGHPQQM- 520
Query: 555 HLAMPPQNMP--QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPM---PGSLPTPSSHPMS 609
L MP NMP QL P SH+P+ HPH +P PM P P S PMS
Sbjct: 521 -LPMP--NMPHHQLPPSSHMPL--HPH-----------HLPRPMQMPPHGHMPPPSMPMS 564
Query: 610 --MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMY 667
MP +GMQG MN P M Q H+M GAP V QG PNS GPQMY
Sbjct: 565 HQMPGSMGMQGGMN---PQMSQSHFM---------GAPSGV------FQGQPNSGGPQMY 606
Query: 668 PQG-GAFNRPQGQMPMMPGY 686
PQG G FNRPQ M+PGY
Sbjct: 607 PQGRGGFNRPQ----MIPGY 622
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Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3' end-processing factor. Required for growth and development in plants. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C0J8|WDR33_HUMAN pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33 PE=1 SV=2 | Back alignment and function description |
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Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/627 (42%), Positives = 353/627 (56%), Gaps = 52/627 (8%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +K EL+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LC SNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN--- 478
FW RNRPGD RD++N+ G E + P + + G P + +
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMG 460
Query: 479 -------EGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQ 531
E TIPG+ M + D ++K P + P + A Q
Sbjct: 461 KDESNEIEMTIPGLDWGM-EEVMQKDQKKVPQKKVPYAKP--------------IPAQFQ 505
Query: 532 QGYQQNPPPMPP--------QQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRP 583
Q + QN P+P ++ ++ A Q M LQ ++ +L+ I R
Sbjct: 506 QAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQ-YTNPQLLEQLKIERL 564
Query: 584 PPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGG 643
+ + P P G+ P+ P P QG M+Q+ QQ H PM+
Sbjct: 565 AQKQVEQIQPPPSSGT-------PLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQM 617
Query: 644 APPQVGGFPNGMQGPPNSSGPQMYPQG 670
PP P G PP G QM PQG
Sbjct: 618 GPPG----PQGQFRPPGPQG-QMGPQG 639
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Essential for both cleavage and polyadenylation of pre-mRNA 3' ends. Homo sapiens (taxid: 9606) |
| >sp|Q8K4P0|WDR33_MOUSE pre-mRNA 3' end processing protein WDR33 OS=Mus musculus GN=Wdr33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/491 (47%), Positives = 303/491 (61%), Gaps = 31/491 (6%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +K EL+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LC SNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN--- 478
FW RNRPGD RD++N+ G E + P + + G P + +
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMG 460
Query: 479 -------EGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQ 531
E TIPG+ M + D ++K P + P + A Q
Sbjct: 461 KDESSEIEMTIPGLDWGM-EEVMQKDQKKVPQKKVPYAKP--------------IPAQFQ 505
Query: 532 QGYQQNPPPMP 542
Q + QN P+P
Sbjct: 506 QAWMQNKVPIP 516
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Essential for both cleavage and polyadenylation of pre-mRNA 3' ends. Mus musculus (taxid: 10090) |
| >sp|Q7RY68|PFS2_NEUCR Polyadenylation factor subunit 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pfs-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 250/402 (62%), Gaps = 36/402 (8%)
Query: 74 RKLTQRRAVDYTSTVVRYMQIRM-WQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 132
R +R DY ++VV YM+ R R S V + +P+ +DMLP A NP+ S
Sbjct: 25 RNRGRRPVTDYGASVVHYMRHRQPRYRGSYAGEVERPSPSYIVDMLPPYARVTNPADSVP 84
Query: 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 192
++ +H+SLNK + IN V WTP GRRL+T S SGEFTLWNG FNFE I+QAHD AIR++
Sbjct: 85 SRHLHSSLNKIKHPINVVRWTPEGRRLLTASSSGEFTLWNGTGFNFETIMQAHDSAIRAL 144
Query: 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 252
V+SH+D+W+VS D G IKYWQ N NNV++ + H + +RDL+F D KF + SDD T+
Sbjct: 145 VYSHSDDWLVSADHDGIIKYWQPNFNNVESIR-GHTDPIRDLAFSPNDTKFVTASDDQTL 203
Query: 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312
KV+DFA + +LTGHGWD KS DWHP++ L+VSG KD LVKLWD ++GR L + HGHK
Sbjct: 204 KVFDFAGGSTDMTLTGHGWDAKSCDWHPSRGLIVSGSKDHLVKLWDPRTGRCLTTLHGHK 263
Query: 313 NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371
N + + + GN + T+++DQ +++D+R M+++ RGH KD++ L WHP H
Sbjct: 264 NTITKTLFERVQGNCLATSARDQTARVFDLRMMRDIALLRGHEKDISTLTWHPVHSNLLS 323
Query: 372 SGSLDGSIFHWLVG----------------HET------------PQVEIHNVHDNTVWD 403
+G DGS+FH+L+ ++T P +I HD +W
Sbjct: 324 TGGSDGSLFHYLLDEPNTAPDGSVMPIPAVYDTADPSSAPAQPIYPAHKIPYAHDFAIWS 383
Query: 404 LAWHPIGYLLC--SNDHTTKFWCRNRPG---DTARDKFNMGQ 440
L WHP+G++L SND T+FW R RPG ++ D++++G+
Sbjct: 384 LDWHPLGHILASGSNDRITRFWSRARPGEAPESFNDRYHIGE 425
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q9UTN4|PFS2_SCHPO Polyadenylation factor subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pfs2 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 201/515 (39%), Positives = 285/515 (55%), Gaps = 61/515 (11%)
Query: 70 AKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPST 129
A+ ++K RR VDY S + +Y+ R + + V + P I++ P Y N ++
Sbjct: 7 ARIIQKPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHVPRPNPNQIINLYPPYEYKYNNTS 66
Query: 130 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI 189
S K++HTS NK R IN V WTP GRRL+TGS +GEFTLWNG +FNFE+I Q+HD+A+
Sbjct: 67 SLCTKYIHTSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAV 126
Query: 190 RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 249
R WS + W++SGD GG +KY++ N+NNVK + AH+ VRD++F D KF + SDD
Sbjct: 127 RCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ-AHEMEVRDVAFSPNDSKFVTASDD 185
Query: 250 TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
++KVW+F EE LTGHGWDVK+VDWHP+K LL SG KD+LVK WD ++G + + H
Sbjct: 186 GSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTCIATLH 245
Query: 310 GHKNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367
GHKN ++ + +N N++ T S+D +++D+RAMK++ RGH KDV + WHP +
Sbjct: 246 GHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNCVTWHPLYP 305
Query: 368 EYFVSGSLDGSIFHWLVG----------HET--------------PQVEIHNVHDNTVWD 403
+G DGS+ H+ + HE P EI HD +W
Sbjct: 306 NLLTTGGSDGSVNHYSLDEPPLLSQQKYHEKHPNVTLSASSYLLYPTAEIPFAHDLGIWS 365
Query: 404 LAWHPIGYLLC--SNDHTTKFWCRNRPGD--TARDKFNMGQNQGYGEQNAVFAGRMPG-- 457
+ +HP+G+LLC SND TT+FW R+RP D + D+ ++G+ Q A+ + R
Sbjct: 366 MQYHPLGHLLCTGSNDKTTRFWSRSRPDDKESTMDRHHLGEEQS----EAMLSQRKAAIE 421
Query: 458 ---NFPLPEGPTTP------GPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQP- 507
N+ E P T P G+ +PG+G ++PSF S Q Q Q
Sbjct: 422 EDDNYEPDENPLTETLANAHNPQFSGVL----NLPGLG-----TMPSFPSPYQHGQPQIP 472
Query: 508 --LSMPLGAPPLPPGPHPSL---LTANQQQGYQQN 537
L L P S LT+ Q GY QN
Sbjct: 473 GMLHASLSNSYAEPSTQNSFIPGLTSKSQDGYPQN 507
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P0CS47|PFS2_CRYNB Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 169/420 (40%), Positives = 247/420 (58%), Gaps = 7/420 (1%)
Query: 72 RMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSF 131
R RK+ RR VDY V ++ + + R + P+ ++ LP VA NPSTS
Sbjct: 61 RKRKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSI 120
Query: 132 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS 191
+VHTS+NK R V WTP RRL+TG+ G+FTLWNG SFN+E I Q HD +IRS
Sbjct: 121 CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS 180
Query: 192 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251
+SHN +VS D GG IKY+ ++ N+ + H+E+ D+S+ D +F +C DD
Sbjct: 181 FTYSHNGQALVSADKGGTIKYFTPHLTNIHGFQ-GHREACHDVSWSPNDERFVTCGDDGL 239
Query: 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311
VK+W + +EERSL+GHGWDV+ VDWHPTK L+VSG KD LVK WD ++G++L + H
Sbjct: 240 VKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSS 299
Query: 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371
K+ + +W+ +G+ V TA +D +I+L+DIR +ELE +GH K+V + WHP H V
Sbjct: 300 KSTINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLV 359
Query: 372 SGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLC--SNDHTTKFWCRN 426
SG G+I ++ + TP I + H++ V+ L++HP+G++LC S D T +FWCR
Sbjct: 360 SGDALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRA 419
Query: 427 R-PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV 485
R PG DK+++ + ++ R G LP G G + + +PG+
Sbjct: 420 RPPGGQEFDKWHLTEEGAAQKELERITKREWGTNALPANAAGGGGGGGGGDKQQVALPGL 479
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|P0CS46|PFS2_CRYNJ Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 233/375 (62%), Gaps = 7/375 (1%)
Query: 72 RMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSF 131
R RK+ RR VDY V ++ + + R + P+ ++ LP VA NPSTS
Sbjct: 61 RKRKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSI 120
Query: 132 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS 191
+VHTS+NK R V WTP RRL+TG+ G+FTLWNG SFN+E I Q HD +IRS
Sbjct: 121 CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS 180
Query: 192 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251
+SHN +VS D GG IKY+ ++ N+ + H+E+ D+S+ D +F +C DD
Sbjct: 181 FTYSHNGQALVSADKGGTIKYFTPHLTNIHGFQ-GHREACHDVSWSPNDERFVTCGDDGL 239
Query: 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311
VK+W + +EERSL+GHGWDV+ VDWHPTK L+VSG KD LVK WD ++G++L + H
Sbjct: 240 VKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSS 299
Query: 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371
K+ + +W+ +G+ V TA +D +I+L+DIR +ELE +GH K+V + WHP H V
Sbjct: 300 KSTINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLV 359
Query: 372 SGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLC--SNDHTTKFWCRN 426
SG G+I ++ + TP I + H++ V+ L++HP+G++LC S D T +FWCR
Sbjct: 360 SGDALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRA 419
Query: 427 R-PGDTARDKFNMGQ 440
R PG DK+++ +
Sbjct: 420 RPPGGQEFDKWHLTE 434
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|Q4I7X1|PFS2_GIBZE Polyadenylation factor subunit 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 161/357 (45%), Positives = 227/357 (63%), Gaps = 32/357 (8%)
Query: 115 IDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ 174
+DMLP A + S K +H+SLNK + IN V WTP GRRL+T S SGEFTLWNG
Sbjct: 66 VDMLPPAARVTKAADSIPIKHLHSSLNKIKHPINVVRWTPEGRRLLTASTSGEFTLWNGT 125
Query: 175 SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234
FNFE I+QAHD AIR++ +SH+D+W++S D GA+KYWQ N NNV++ +AH + +RDL
Sbjct: 126 GFNFETIMQAHDSAIRALEYSHSDDWLISADHDGAVKYWQPNFNNVQS-INAHTDPIRDL 184
Query: 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294
+F +D KF + SDD+T+K++DFA Q E L GHGWD KSVDWHPTK LLVSG KD LV
Sbjct: 185 AFSPSDSKFVTASDDSTLKIFDFALGQMESKLEGHGWDAKSVDWHPTKGLLVSGSKDHLV 244
Query: 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
KLWD ++ R L + HGHK+ + V + + G + T+++DQ +++D+R M+++ +GH
Sbjct: 245 KLWDPRTSRCLTTLHGHKSTITKVLFEKVRGACLATSARDQTARVFDLRMMRDICLLKGH 304
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------------------------- 388
KD++ L WHP H +G +DGS+FH+L+
Sbjct: 305 EKDISTLTWHPVHPNLLSTGGMDGSLFHYLLDSPNPPPGQSFTVAPYDSPDPTTVPAQSV 364
Query: 389 -PQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGDTA--RDKFNMGQ 440
P ++ HD +W L WHP+G++L SND T+FW R RPGD +D++++G+
Sbjct: 365 WPTHKVPYAHDYAIWSLDWHPLGHILASGSNDRITRFWSRARPGDAEVFQDRYHIGE 421
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) |
| >sp|Q2TZG4|PFS2_ASPOR Polyadenylation factor subunit 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pfs2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (827), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 159/404 (39%), Positives = 238/404 (58%), Gaps = 36/404 (8%)
Query: 79 RRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAI-DMLPTVAYTDNPSTSFAAKFVH 137
R DY S++V++M+ R + R + A+ I DMLP +A +P + + +H
Sbjct: 32 RLVTDYGSSLVQWMRTRRPRYKGGHRMETERPSASYIVDMLPPLARIHSPVDTIPVRHLH 91
Query: 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH----DHAIRSMV 193
S+ K++ I V WTP GRRL+TG +GEF LWNG +FNFE ++ AH + S+
Sbjct: 92 QSIGKSKKPITVVRWTPEGRRLLTGGHTGEFMLWNGTAFNFETVMDAHYDQLQAGVTSLA 151
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
WSH+ +W++SG G IKYW+ N NNV+ AH ++VRDL++ +D KF S SDDTT+K
Sbjct: 152 WSHSHDWLISGGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFLSASDDTTLK 211
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313
++DF + LTGH WDVKS DWHPTK LLVSG KD VK WD ++ R L + H HKN
Sbjct: 212 IFDFTSRTADTVLTGHNWDVKSCDWHPTKGLLVSGSKDHQVKFWDPRTARCLTTLHSHKN 271
Query: 314 MVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372
V ++++ N N + T+S+DQ +++D+R M+++ RGH K V++L WHP H +
Sbjct: 272 TVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILRGHEKPVSSLTWHPIHSSLIST 331
Query: 373 GSLDGSIFHWLVGH------ETPQV--------------------EIHNVHDNTVWDLAW 406
GS DGS++H+L+ + P + + H T+W L W
Sbjct: 332 GSEDGSLYHYLLDEPNVPSGQIPTIAPYDSPDPANTPAQVIYPAHRVQYAHSATIWSLDW 391
Query: 407 HPIGYLLC--SNDHTTKFWCRNRPGDTA--RDKFNMGQNQGYGE 446
HP+G++L S D+ T+FW R RPG+T+ +D+F++G+ +
Sbjct: 392 HPLGHILASGSKDNFTRFWSRARPGETSYMKDRFHIGEEAAEAQ 435
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
| >sp|Q6BVZ3|PFS2_DEBHA Polyadenylation factor subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PFS2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 248/459 (54%), Gaps = 43/459 (9%)
Query: 70 AKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPS- 128
A + +K RR VD+ + + R+ R D + ++ + ID+LP+ AY N
Sbjct: 39 ASQEKKTAYRRTVDHGNNMGRWYINRSLGIDDQPIGKIRPESSYLIDLLPSPAYASNSVR 98
Query: 129 --------TSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
KFVH S NK + SIN V WTP GRRL+ S SGEFT+WNG +FNFE
Sbjct: 99 ENKNNMSIMDIQTKFVHLSSNKAKHSINTVKWTPEGRRLLVASHSGEFTVWNGMTFNFET 158
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
I+QAHD AI S+ +SHND W++SGD G IKYWQ N NNV + H + +RD++F D
Sbjct: 159 IMQAHDSAILSLKYSHNDEWLLSGDQSGVIKYWQTNFNNVNI-INGHSDGIRDIAFSPND 217
Query: 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300
KF +CSDD+T+K+W+F QEERSL GH WDVKS DWHP L+VSG KD+L+KLWD +
Sbjct: 218 SKFLTCSDDSTMKIWNFNNGQEERSLVGHHWDVKSADWHPNLGLIVSGSKDNLIKLWDPR 277
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVT 358
+ + + HG K+ + K+ G L A S+D+ +++D+R MK++ R H D++
Sbjct: 278 ASSCVSTLHGFKHTITKTKFQPTGTKRLLASVSRDKSCRIFDLRTMKDILVIRDHETDLS 337
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHWLVG---------------HETPQVEIHNV---HDNT 400
+ WHP H + + DGS+ H+++ +P H + H+
Sbjct: 338 CVEWHPVHPSMITTAAYDGSMNHYIMDSYISDNNIKNDSNNNSTSPIEASHKIPYAHEKA 397
Query: 401 VWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD--TARDKFNMGQNQG---YGEQNAVFAG 453
+ L +HP+G+LLCS D + +FW R RP D + +D G YG N + A
Sbjct: 398 IHALEYHPLGHLLCSAGADRSARFWSRARPNDPMSFQDALYTNDKVGAWYYGVNNNINAV 457
Query: 454 RMPGNFPL-PEGPTTPGPF-APGLTR----NEGTIPGVG 486
P + + P++ PGL NE T G G
Sbjct: 458 IEPSTASVNKDDPSSAQAINLPGLNNLPNGNESTTNGWG 496
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| 255544005 | 727 | WD-repeat protein, putative [Ricinus com | 0.994 | 0.975 | 0.798 | 0.0 | |
| 296090356 | 699 | unnamed protein product [Vitis vinifera] | 0.906 | 0.924 | 0.784 | 0.0 | |
| 359495038 | 730 | PREDICTED: flowering time control protei | 0.897 | 0.876 | 0.782 | 0.0 | |
| 449445059 | 725 | PREDICTED: LOW QUALITY PROTEIN: flowerin | 0.900 | 0.885 | 0.790 | 0.0 | |
| 356546364 | 713 | PREDICTED: flowering time control protei | 0.917 | 0.917 | 0.785 | 0.0 | |
| 356556823 | 714 | PREDICTED: flowering time control protei | 0.917 | 0.915 | 0.784 | 0.0 | |
| 140068416 | 745 | WD40-like [Medicago truncatula] | 0.886 | 0.848 | 0.798 | 0.0 | |
| 357515041 | 794 | Flowering time control protein FY [Medic | 0.863 | 0.775 | 0.785 | 0.0 | |
| 218189742 | 717 | hypothetical protein OsI_05213 [Oryza sa | 0.903 | 0.898 | 0.677 | 0.0 | |
| 222619877 | 717 | hypothetical protein OsJ_04772 [Oryza sa | 0.903 | 0.898 | 0.677 | 0.0 |
| >gi|255544005|ref|XP_002513065.1| WD-repeat protein, putative [Ricinus communis] gi|223548076|gb|EEF49568.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1029 bits (2661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/731 (79%), Positives = 614/731 (83%), Gaps = 22/731 (3%)
Query: 1 MMYGDPQ---QHHNQQQPGGGGDHFNRGPQPPQPPGPPMMRQPSASSSTLNPPEFHHLPS 57
MMYGD Q Q G F RGP PP PP MMRQPSASS+TLN +FHH P
Sbjct: 1 MMYGDHQFQQQQQQPPPQPQPGGEFLRGPPPPPPP---MMRQPSASSTTLNSSDFHHPPG 57
Query: 58 NPP----YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAA 113
P YD HGD+ A+RMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQ TPAA
Sbjct: 58 PAPPQPPYDVHGDNIGARRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAA 117
Query: 114 AIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG 173
AIDMLPT AY++NPSTSFAAKFVHTSLNKNRCSINRVLWTP GRRLITGSQSGEFTLWNG
Sbjct: 118 AIDMLPTAAYSENPSTSFAAKFVHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWNG 177
Query: 174 QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233
QSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGGAIKYWQ+NMNNVKANK+AHKESVRD
Sbjct: 178 QSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKNAHKESVRD 237
Query: 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293
LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD+L
Sbjct: 238 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNL 297
Query: 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
VKLWDAKS RELCSFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH
Sbjct: 298 VKLWDAKSERELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 357
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413
RKDVTALAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+E+ N HDN+VWDLAWHPIGYLL
Sbjct: 358 RKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEVPNAHDNSVWDLAWHPIGYLL 417
Query: 414 C--SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPF 471
C SNDHTTKFWCRNRPGDTAR+KFNMGQNQGYGEQN AGR+PGNFP+PE PTTPGPF
Sbjct: 418 CSGSNDHTTKFWCRNRPGDTAREKFNMGQNQGYGEQNPALAGRLPGNFPVPEPPTTPGPF 477
Query: 472 APGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPL--SMPLGAPPLPPGPHPSLLTAN 529
APGL RNEGTIPG+G AMPLSIPS D ++QGEQKQPL SMPLGAPPLPPGPHPSLLTAN
Sbjct: 478 APGLARNEGTIPGIGAAMPLSIPSLDGTSQGEQKQPLPISMPLGAPPLPPGPHPSLLTAN 537
Query: 530 QQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQ 589
QQQGYQQNP MP QQHQ PQQMP L MPP NM QLQ P L P QMP
Sbjct: 538 QQQGYQQNPQQMPQQQHQALPQQMPSLPMPPPNMQQLQ-PPSHLPLLPHPHLPRPQQMPP 596
Query: 590 LGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG---GAPP 646
GMP + G P+SH + M P+GMQG+MNQM PPM QGH+MGMN MHSG A P
Sbjct: 597 HGMPGTLSGPSSIPASHAVPMAGPMGMQGTMNQMVPPMPQGHFMGMNQMHSGSLPTSAAP 656
Query: 647 QVGGFPNG---MQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPP 702
VGGFPNG MQGP N++G MYPQGG FNRPQ GQMPMMPG+NP+QSG+QSGM P
Sbjct: 657 PVGGFPNGLPNMQGPSNATGAPMYPQGGPFNRPQGGQMPMMPGFNPYQSGSQSGMPLSLP 716
Query: 703 PGPPPHGQSQQ 713
PGPPPH Q+ Q
Sbjct: 717 PGPPPHSQTPQ 727
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090356|emb|CBI40175.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/673 (78%), Positives = 560/673 (83%), Gaps = 27/673 (4%)
Query: 36 MMRQPSASSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIR 95
MMRQPSASS+ L PE+HH PS PPYDAH DSFAAKRMRKL QRRAVDYTSTVVRYMQIR
Sbjct: 1 MMRQPSASSTNL-APEYHH-PSAPPYDAHADSFAAKRMRKLAQRRAVDYTSTVVRYMQIR 58
Query: 96 MWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT 155
MWQRDSRDRTVLQ TPAAAID+LP VAY+DNPSTSFAAKFVHTSLNKNRCSINRVLWTPT
Sbjct: 59 MWQRDSRDRTVLQPTPAAAIDLLPAVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT 118
Query: 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215
GRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSMVWSHN+NWMV+GDDGG+IKYWQN
Sbjct: 119 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNENWMVTGDDGGSIKYWQN 178
Query: 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 275
NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE+RSL+GHGWDVKS
Sbjct: 179 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEDRSLSGHGWDVKS 238
Query: 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335
VDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTASKDQI
Sbjct: 239 VDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQI 298
Query: 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395
IKLYDIRAMKELESFRGHRKDVTALAWHPFHE+YFVSGS DGSIFHWLVGHETPQVEI
Sbjct: 299 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEDYFVSGSFDGSIFHWLVGHETPQVEIPG 358
Query: 396 VHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAG 453
HDN+VWDLAWHPIGY+LC SNDHTTKFWCRNRPGDT RDKFNMG NQGYG+QN G
Sbjct: 359 AHDNSVWDLAWHPIGYILCSGSNDHTTKFWCRNRPGDTVRDKFNMGHNQGYGDQNPALGG 418
Query: 454 RMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLG 513
RMPGNFP+PE PTTPGPFA GLTRNEGTIPGVGVAMPL+IPS D+SAQGEQKQPL + +
Sbjct: 419 RMPGNFPVPETPTTPGPFAAGLTRNEGTIPGVGVAMPLTIPSLDTSAQGEQKQPLPVSIP 478
Query: 514 APPLPPGPHPSLLTANQQQGYQQNPPPMP-PQQHQGHPQQMPHLAMPPQNMPQLQPPSHL 572
P P P Q P PQ HQ PQQMP L + P NM QLQ P
Sbjct: 479 LGAPPLPPGPHPSLLAANQQQAYQQNPPQMPQHHQALPQQMPPLPLQPPNMSQLQ-PPSH 537
Query: 573 PMLQHPHISRPPPQMPQLGM----PSPMPGSLPTPS---SHPMSMPVPVGMQGSMNQMAP 625
L PPQ+P +GM PS MPGSLP PS S P+ MP P+GMQG+MNQM P
Sbjct: 538 LPLLPHPHLPRPPQLPPMGMPSNIPSSMPGSLPMPSMPTSLPLQMPAPMGMQGAMNQMGP 597
Query: 626 PMQQGHYMGMNPMHSG----GGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR-PQGQM 680
PM QGH+MGMNPMH+G GG PP +G F QG G QMY GG+FNR P GQM
Sbjct: 598 PMPQGHFMGMNPMHAGSLPTGGVPPPIGSF----QG-----GAQMYAPGGSFNRAPAGQM 648
Query: 681 PMMPGYNPFQSGN 693
PMMPG NP+Q+GN
Sbjct: 649 PMMPGLNPYQTGN 661
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495038|ref|XP_002267704.2| PREDICTED: flowering time control protein FY-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/666 (78%), Positives = 553/666 (83%), Gaps = 26/666 (3%)
Query: 43 SSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSR 102
+SST PE+HH PS PPYDAH DSFAAKRMRKL QRRAVDYTSTVVRYMQIRMWQRDSR
Sbjct: 38 ASSTNLAPEYHH-PSAPPYDAHADSFAAKRMRKLAQRRAVDYTSTVVRYMQIRMWQRDSR 96
Query: 103 DRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162
DRTVLQ TPAAAID+LP VAY+DNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG
Sbjct: 97 DRTVLQPTPAAAIDLLPAVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 156
Query: 163 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222
SQSGEFTLWNGQSFNFEMILQAHD AIRSMVWSHN+NWMV+GDDGG+IKYWQNNMNNVKA
Sbjct: 157 SQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNENWMVTGDDGGSIKYWQNNMNNVKA 216
Query: 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 282
NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE+RSL+GHGWDVKSVDWHPTK
Sbjct: 217 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEDRSLSGHGWDVKSVDWHPTK 276
Query: 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342
SLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIR
Sbjct: 277 SLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIR 336
Query: 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402
AMKELESFRGHRKDVTALAWHPFHE+YFVSGS DGSIFHWLVGHETPQVEI HDN+VW
Sbjct: 337 AMKELESFRGHRKDVTALAWHPFHEDYFVSGSFDGSIFHWLVGHETPQVEIPGAHDNSVW 396
Query: 403 DLAWHPIGYLLC--SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 460
DLAWHPIGY+LC SNDHTTKFWCRNRPGDT RDKFNMG NQGYG+QN GRMPGNFP
Sbjct: 397 DLAWHPIGYILCSGSNDHTTKFWCRNRPGDTVRDKFNMGHNQGYGDQNPALGGRMPGNFP 456
Query: 461 LPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPG 520
+PE PTTPGPFA GLTRNEGTIPGVGVAMPL+IPS D+SAQGEQKQPL + + P
Sbjct: 457 VPETPTTPGPFAAGLTRNEGTIPGVGVAMPLTIPSLDTSAQGEQKQPLPVSIPLGAPPLP 516
Query: 521 PHPSLLTANQQQGYQQNPPPMP-PQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPH 579
P P Q P PQ HQ PQQMP L + P NM QLQ P L
Sbjct: 517 PGPHPSLLAANQQQAYQQNPPQMPQHHQALPQQMPPLPLQPPNMSQLQ-PPSHLPLLPHP 575
Query: 580 ISRPPPQMPQLGM----PSPMPGSLPTPS---SHPMSMPVPVGMQGSMNQMAPPMQQGHY 632
PPQ+P +GM PS MPGSLP PS S P+ MP P+GMQG+MNQM PPM QGH+
Sbjct: 576 HLPRPPQLPPMGMPSNIPSSMPGSLPMPSMPTSLPLQMPAPMGMQGAMNQMGPPMPQGHF 635
Query: 633 MGMNPMHSG----GGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR-PQGQMPMMPGYN 687
MGMNPMH+G GG PP +G F QG G QMY GG+FNR P GQMPMMPG N
Sbjct: 636 MGMNPMHAGSLPTGGVPPPIGSF----QG-----GAQMYAPGGSFNRAPAGQMPMMPGLN 686
Query: 688 PFQSGN 693
P+Q+GN
Sbjct: 687 PYQTGN 692
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445059|ref|XP_004140291.1| PREDICTED: LOW QUALITY PROTEIN: flowering time control protein FY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/674 (79%), Positives = 573/674 (85%), Gaps = 32/674 (4%)
Query: 39 QPSASSSTLNPP-EFHHLPSNP------PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRY 91
QPSASS+TL P + HH P +P PY+AH DSFAAKRMRKLTQRRAVDYTSTVVRY
Sbjct: 39 QPSASSTTLAPDFQQHHHPRHPSGPAPPPYEAHSDSFAAKRMRKLTQRRAVDYTSTVVRY 98
Query: 92 MQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVL 151
MQ+RMWQRDS+DRTVLQ+TPAAAIDMLP AY+DNPSTSFAAKFVHTS+NKNRCSINRVL
Sbjct: 99 MQLRMWQRDSKDRTVLQSTPAAAIDMLPPAAYSDNPSTSFAAKFVHTSINKNRCSINRVL 158
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGG+IK
Sbjct: 159 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIK 218
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL+GHGW
Sbjct: 219 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGW 278
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
DVKSVDWHPTKSLLVSGGKD+LVKLWDAK+G+ELCSFHGHKN VLCVKWNQNGNWVLTAS
Sbjct: 279 DVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGKELCSFHGHKNTVLCVKWNQNGNWVLTAS 338
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+
Sbjct: 339 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQI 398
Query: 392 EIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 449
EI N HDN+VWDLAWHPIGYLLC SNDHTTKFWCRNRPGDTARDKF+ GY EQN
Sbjct: 399 EITNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFST----GYSEQNP 454
Query: 450 VFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQP-- 507
+ R+ GNF +P+GPTTPGPF PGL RNEGTIPG+GVAMPLS D++A GE KQP
Sbjct: 455 AGSARVTGNFVVPDGPTTPGPFPPGLARNEGTIPGIGVAMPLS----DTAAMGEHKQPHQ 510
Query: 508 LSMPLGAPPLPPGPHPSLLTANQQQGY-QQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQL 566
+S+P+GAPPLPPGPHPSLL ANQQ + Q Q QQM + M PQN+PQL
Sbjct: 511 ISLPVGAPPLPPGPHPSLLAANQQHSFQQNPQQQQQQQSQHHQTQQMAPVPMQPQNLPQL 570
Query: 567 QPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPT--PSSHPMSMPVPVGMQGSMNQMA 624
QPPSH P+L HP++ R PPQMP L MPS PGSLP+ P+S P+ MP P+GMQGSMNQM
Sbjct: 571 QPPSHFPLLPHPNLPR-PPQMPALNMPS-QPGSLPSSGPASGPLPMPGPMGMQGSMNQMV 628
Query: 625 PPMQQGHYMGMNPMHSG----GGAPPQVGGFPN---GMQGPPNSSGPQMYPQGGAFNRPQ 677
PPM Q HYMGMNPMHSG GAPP V GF N MQGP N+SG MYPQGG FNR Q
Sbjct: 629 PPMPQNHYMGMNPMHSGPMPTSGAPPSVQGFQNNLPNMQGPSNASGAPMYPQGGGFNRGQ 688
Query: 678 -GQMPMMPGYNPFQ 690
GQMPM PG+NP+Q
Sbjct: 689 AGQMPMTPGFNPYQ 702
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546364|ref|XP_003541596.1| PREDICTED: flowering time control protein FY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/682 (78%), Positives = 562/682 (82%), Gaps = 28/682 (4%)
Query: 36 MMRQPSASSSTLNPPEFHHLPSNPP----YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRY 91
+MRQ SASS+ L PEFHH P YDAH D AKR+RKLTQR+AVDYTSTVVRY
Sbjct: 46 VMRQGSASSTNL-APEFHHPGPGGPPPPHYDAHSDIHGAKRIRKLTQRKAVDYTSTVVRY 104
Query: 92 MQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVL 151
MQIRM QRDSRDRTVLQ T AAAIDMLP V Y DNPSTSFAAKFVHTSLNKNRC INRVL
Sbjct: 105 MQIRMSQRDSRDRTVLQPTSAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVL 164
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
WTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGGAIK
Sbjct: 165 WTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIK 224
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE SLTGHGW
Sbjct: 225 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGW 284
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
DVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTAS
Sbjct: 285 DVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTAS 344
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
KDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+
Sbjct: 345 KDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHETPQI 404
Query: 392 EIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 449
EI N HDN VWDLAWHPIGYLLC S+DHTTKFWCRNRPGD ARD+FN G QGY EQ+
Sbjct: 405 EISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDPARDRFNTGM-QGYAEQSP 463
Query: 450 VFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 509
V AGR GNFP+ EGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPS D QGEQKQP
Sbjct: 464 V-AGRTGGNFPIAEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSLD-MPQGEQKQPHP 521
Query: 510 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPP 569
+ +GAPPLPPGPHPSL+ ANQQQ YQQNP MP QHQ PQQM L MPP NM QLQ P
Sbjct: 522 VSMGAPPLPPGPHPSLINANQQQPYQQNPQQMPQHQHQALPQQMGSLPMPP-NMQQLQHP 580
Query: 570 SHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 629
SH P P QMP +GMP +PG P+SHPM MP P+GMQG+MNQM PM Q
Sbjct: 581 SHSPFPNMPRPPP---QMP-IGMPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGSPMPQ 636
Query: 630 GHYMGMNPMHSGG-------GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMP 681
G Y+GMN MHSG G PN MQGP N++ YPQG +FNRPQ GQMP
Sbjct: 637 GPYVGMNQMHSGSLPTSGGPPLGGFPGNLPN-MQGPSNAN----YPQGASFNRPQGGQMP 691
Query: 682 MMPGYNPFQSGNQSGMAPPPPP 703
+M GYNP+QSGNQSGM P P
Sbjct: 692 LMQGYNPYQSGNQSGMPPNAQP 713
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556823|ref|XP_003546720.1| PREDICTED: flowering time control protein FY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/682 (78%), Positives = 562/682 (82%), Gaps = 28/682 (4%)
Query: 36 MMRQPSASSSTLNPPEFHHLPSNPP----YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRY 91
MMRQ SASS+ L PEFHH P YDAH DS AKR+RKLTQR+AVDYTSTVVRY
Sbjct: 47 MMRQGSASSTNL-APEFHHPGPGGPPPPHYDAHSDSHGAKRIRKLTQRKAVDYTSTVVRY 105
Query: 92 MQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVL 151
MQIRM QRDSRDRTVLQ TPAAAIDMLP V Y DNPSTSFAAKFVHTSLNKNRC INRVL
Sbjct: 106 MQIRMSQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVL 165
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
WTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGGAIK
Sbjct: 166 WTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIK 225
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE SL+GHGW
Sbjct: 226 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLSGHGW 285
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
DVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTAS
Sbjct: 286 DVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTAS 345
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
KDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+
Sbjct: 346 KDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHETPQI 405
Query: 392 EIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 449
EI N HDN VWDLAWHPIGYLLC S+DHTTKFWCRNRPGD ARD+FN G GY +QN
Sbjct: 406 EISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDPARDRFNTGM-PGYADQNP 464
Query: 450 VFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 509
V GRM GNF + EGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPS D QGEQKQP
Sbjct: 465 V-VGRMGGNFTIAEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSLD-MPQGEQKQPHP 522
Query: 510 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPP 569
+ +GAPPLPPGPHPSLL ANQQQ YQQNP +P QHQ PQQM L MPP NM QLQ P
Sbjct: 523 VSMGAPPLPPGPHPSLLNANQQQPYQQNPQQIPQHQHQALPQQMGPLPMPP-NMQQLQHP 581
Query: 570 SHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 629
SH P P QMP +GMP +PG P+SHPM MP P+GMQG+MNQM PM Q
Sbjct: 582 SHSPFPNMPRPPP---QMP-IGMPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGTPMPQ 637
Query: 630 GHYMGMNPMHSGG-------GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMP 681
G Y+GMN MHSG G PN MQGP N++ YPQG +FNRPQ GQMP
Sbjct: 638 GPYVGMNQMHSGSLPTSGGPPLGGFPGNLPN-MQGPSNAN----YPQGASFNRPQGGQMP 692
Query: 682 MMPGYNPFQSGNQSGMAPPPPP 703
+M GY+P+QSGNQSGM P P
Sbjct: 693 LMQGYSPYQSGNQSGMPPNAQP 714
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|140068416|gb|ABO83643.1| WD40-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/654 (79%), Positives = 551/654 (84%), Gaps = 22/654 (3%)
Query: 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT 120
YD H DS AKRMRKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP
Sbjct: 100 YDVHNDSHGAKRMRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPA 159
Query: 121 VAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
Y+DNPSTSFAAKFVHTSLNKNRC+IN VLWTPTGRRLITGSQ+GEFTLWNGQSFNFEM
Sbjct: 160 AGYSDNPSTSFAAKFVHTSLNKNRCAINCVLWTPTGRRLITGSQTGEFTLWNGQSFNFEM 219
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
ILQAHD AIRSM+WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD
Sbjct: 220 ILQAHDSAIRSMIWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 279
Query: 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300
LKFCSCSDDTTVKVWDFARCQEE SLTGHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK
Sbjct: 280 LKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAK 339
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360
SG+EL SFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT L
Sbjct: 340 SGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTL 399
Query: 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDH 418
AWHPFHEEYFVSGS DGSIFHWLVG +TPQ+EI N HDN VWDLAWHPIGYLLC S+DH
Sbjct: 400 AWHPFHEEYFVSGSYDGSIFHWLVGQDTPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDH 459
Query: 419 TTKFWCRNRPGDTARD-KFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGL-T 476
TTKFW RNRPGD+ARD ++N G QGY EQN V AGR+PG+F +PEGPTTPGPF PGL T
Sbjct: 460 TTKFWSRNRPGDSARDSRYNNGI-QGYAEQNPV-AGRVPGHFVMPEGPTTPGPFPPGLMT 517
Query: 477 RNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQ 536
RNEGTIPGVGVAMPLSIPSFD S QGEQKQP +GAPPLPPGPHPSLL NQQQ +QQ
Sbjct: 518 RNEGTIPGVGVAMPLSIPSFDGS-QGEQKQPHPGSIGAPPLPPGPHPSLLNPNQQQPFQQ 576
Query: 537 NPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPM 596
NP +P Q Q P L MPP NMPQ+Q SH ML H H+ RPPPQMP M
Sbjct: 577 NPQQIPQHQQQLQQHMGP-LPMPP-NMPQIQHSSHSSMLPHQHLPRPPPQMPH-----GM 629
Query: 597 PGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMH---SGGGAPPQVGGFPN 653
PGSLP P+SHPM +P P+GMQG+MNQM PPM QGHY GMN MH P +GGFPN
Sbjct: 630 PGSLPVPTSHPMPIPGPMGMQGTMNQMGPPMPQGHYGGMNQMHSGSLSSSGGPPMGGFPN 689
Query: 654 GMQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPPPGPP 706
MQGPPN++ YPQG FNRPQ GQMPMM GYNP+QSGNQ GM P G P
Sbjct: 690 NMQGPPNNN----YPQGAPFNRPQGGQMPMMQGYNPYQSGNQPGMPPNSQQGGP 739
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515041|ref|XP_003627809.1| Flowering time control protein FY [Medicago truncatula] gi|355521831|gb|AET02285.1| Flowering time control protein FY [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/653 (78%), Positives = 542/653 (83%), Gaps = 37/653 (5%)
Query: 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT 120
YD H DS AKRMRKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP
Sbjct: 100 YDVHNDSHGAKRMRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPA 159
Query: 121 VAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
Y+DNPSTSFAAKFVHTSLNKNRC+IN VLWTPTGRRLITGSQ+GEFTLWNGQSFNFEM
Sbjct: 160 AGYSDNPSTSFAAKFVHTSLNKNRCAINCVLWTPTGRRLITGSQTGEFTLWNGQSFNFEM 219
Query: 181 ILQ---------------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225
ILQ AHD AIRSM+WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS
Sbjct: 220 ILQLKNIRGQRWNSKYVQAHDSAIRSMIWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 279
Query: 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285
AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE SLTGHGWDVKSVDWHPTKSLL
Sbjct: 280 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLL 339
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
VSGGKD+LVKLWDAKSG+EL SFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMK
Sbjct: 340 VSGGKDNLVKLWDAKSGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 399
Query: 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
ELESFRGHRKDVT LAWHPFHEEYFVSGS DGSIFHWLVG +TPQ+EI N HDN VWDLA
Sbjct: 400 ELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGQDTPQIEISNAHDNNVWDLA 459
Query: 406 WHPIGYLLC--SNDHTTKFWCRNRPGDTARD-KFNMGQNQGYGEQNAVFAGRMPGNFPLP 462
WHPIGYLLC S+DHTTKFW RNRPGD+ARD ++N G QGY EQN V AGR+PG+F +P
Sbjct: 460 WHPIGYLLCSGSSDHTTKFWSRNRPGDSARDSRYNNGI-QGYAEQNPV-AGRVPGHFVMP 517
Query: 463 EGPTTPGPFAPGL-TRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGP 521
EGPTTPGPF PGL TRNEGTIPGVGVAMPLSIPSFD S QGEQKQP +GAPPLPPGP
Sbjct: 518 EGPTTPGPFPPGLMTRNEGTIPGVGVAMPLSIPSFDGS-QGEQKQPHPGSIGAPPLPPGP 576
Query: 522 HPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHIS 581
HPSLL NQQQ +QQNP +P Q Q P L MPP NMPQ+Q SH ML H H+
Sbjct: 577 HPSLLNPNQQQPFQQNPQQIPQHQQQLQQHMGP-LPMPP-NMPQIQHSSHSSMLPHQHLP 634
Query: 582 RPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMH-- 639
RPPPQMP MPGSLP P+SHPM +P P+GMQG+MNQM PPM QGHY GMN MH
Sbjct: 635 RPPPQMPH-----GMPGSLPVPTSHPMPIPGPMGMQGTMNQMGPPMPQGHYGGMNQMHSG 689
Query: 640 -SGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQ 690
P +GGFPN MQGPPN++ YPQG FNRPQ GQMPMM GYNP+Q
Sbjct: 690 SLSSSGGPPMGGFPNNMQGPPNNN----YPQGAPFNRPQGGQMPMMQGYNPYQ 738
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218189742|gb|EEC72169.1| hypothetical protein OsI_05213 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/694 (67%), Positives = 522/694 (75%), Gaps = 50/694 (7%)
Query: 21 HFNRGPQPPQPPGPPMMRQPSASSSTLNPPEF-------HHLPSNPPYDAHGDSFAAKRM 73
F RGP P QPP MRQ SA+SST P ++ ++PPYDA+GD+F AKRM
Sbjct: 30 EFYRGP-PTQPP----MRQLSAASSTNIPGDYAAHQGHPPPQQNHPPYDAYGDNFGAKRM 84
Query: 74 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 133
RK QRR VDYTSTVVRY+Q RMWQRD+RDR +Q TPAA +DMLP+VAY DNPSTSFAA
Sbjct: 85 RKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDMLPSVAYPDNPSTSFAA 144
Query: 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV 193
KFVH+S+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD A+RSM+
Sbjct: 145 KFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMI 204
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRTDLKFCSCSDDTTVK
Sbjct: 205 WSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTVK 264
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313
VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDAKSGREL SFHGHKN
Sbjct: 265 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHKN 324
Query: 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373
+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTALAWHPFHEEYFVSG
Sbjct: 325 IVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSG 384
Query: 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431
S DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCS NDH T+FWCRNRPGD
Sbjct: 385 SYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGDL 444
Query: 432 ARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPL 491
RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+RNEGTIPG+GVAMPL
Sbjct: 445 TRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMPL 504
Query: 492 SIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQ 551
D S GEQ+ + P P L A QQ Q Q Q
Sbjct: 505 -----DGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQ----------QQYQQMQQQ 549
Query: 552 QMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 611
PP NMPQLQPP+H ML H SR P +PQL PS P PM P
Sbjct: 550 HPQFPRPPPPNMPQLQPPAH--MLPHAQGSRAP--LPQL--PSMPGPPPVNPPLPPMPHP 603
Query: 612 VPVGMQGSMNQMAPPMQQGHYMGMNPMHSG--GGAPPQVGGFPNGM---QGPPNSSGPQM 666
+ + +QGS NQM P M Q H +GMN H G PP +GGFPNGM QG ++SG Q
Sbjct: 604 MAMQVQGSSNQMMPQMPQ-HLIGMNQTHQGPPSNMPP-MGGFPNGMGNIQGGSSASGMQN 661
Query: 667 YPQGGAFNRPQGQMP--------MMPGYNPFQSG 692
+P GG +NRPQGQMP +PG + +Q G
Sbjct: 662 FPMGGMYNRPQGQMPPQAQAQMTSIPGLSSYQPG 695
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222619877|gb|EEE56009.1| hypothetical protein OsJ_04772 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/694 (67%), Positives = 522/694 (75%), Gaps = 50/694 (7%)
Query: 21 HFNRGPQPPQPPGPPMMRQPSASSSTLNPPEF-------HHLPSNPPYDAHGDSFAAKRM 73
F RGP PPQPP MRQ SA+SST P ++ + PPYDA+GD+F AKRM
Sbjct: 30 EFYRGP-PPQPP----MRQLSAASSTNIPGDYAAHQGHPPPQQNQPPYDAYGDNFGAKRM 84
Query: 74 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 133
RK QRR VDYTSTVVRY+Q RMWQRD+RDR +Q TPAA +DMLP+VAY DNPSTSFAA
Sbjct: 85 RKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDMLPSVAYPDNPSTSFAA 144
Query: 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV 193
KFVH+S+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD A+RSM+
Sbjct: 145 KFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMI 204
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRTDLKFCSCSDDTTVK
Sbjct: 205 WSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTVK 264
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313
VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDAKSGREL SFHGHKN
Sbjct: 265 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHKN 324
Query: 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373
+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTALAWHPFHEEYFVSG
Sbjct: 325 IVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSG 384
Query: 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431
S DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCS NDH T+FWCRNRPGD
Sbjct: 385 SYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGDL 444
Query: 432 ARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPL 491
RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+RNEGTIPG+GVAMPL
Sbjct: 445 TRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMPL 504
Query: 492 SIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQ 551
D S GEQ+ + P P L A QQ Q Q Q
Sbjct: 505 -----DGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQ----------QQYQQMQQQ 549
Query: 552 QMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 611
PP NMPQLQPP+H ML H SR P +PQL PS P PM P
Sbjct: 550 HPQFPRPPPPNMPQLQPPAH--MLPHAQGSRAP--LPQL--PSMSGPPPVNPPLPPMPHP 603
Query: 612 VPVGMQGSMNQMAPPMQQGHYMGMNPMHSG--GGAPPQVGGFPNGM---QGPPNSSGPQM 666
+ + +QGS NQM P M Q H +GMN H G PP +GGFPNGM QG ++SG Q
Sbjct: 604 MAMQVQGSSNQMMPQMPQ-HLIGMNQTHQGPPSNMPP-MGGFPNGMGNIQGGSSASGMQN 661
Query: 667 YPQGGAFNRPQGQMP--------MMPGYNPFQSG 692
+P GG +NRPQG+MP +PG + +Q G
Sbjct: 662 FPMGGMYNRPQGKMPPQAQAQMTSIPGLSSYQPG 695
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| UNIPROTKB|Q5JKX0 | 527 | B1147A04.35 "cDNA clone:J01300 | 0.450 | 0.609 | 0.829 | 1.3e-176 | |
| DICTYBASE|DDB_G0295793 | 657 | DDB_G0295793 "WD40 repeat-cont | 0.631 | 0.684 | 0.522 | 1.2e-136 | |
| UNIPROTKB|E1BCT7 | 1336 | WDR33 "Uncharacterized protein | 0.562 | 0.300 | 0.525 | 2e-132 | |
| UNIPROTKB|F1PV59 | 1336 | WDR33 "Uncharacterized protein | 0.562 | 0.300 | 0.525 | 3.3e-132 | |
| UNIPROTKB|Q9C0J8 | 1336 | WDR33 "pre-mRNA 3' end process | 0.562 | 0.300 | 0.525 | 3.3e-132 | |
| MGI|MGI:1921570 | 1330 | Wdr33 "WD repeat domain 33" [M | 0.562 | 0.301 | 0.525 | 8.7e-132 | |
| UNIPROTKB|E1BT84 | 1323 | WDR33 "Uncharacterized protein | 0.601 | 0.324 | 0.5 | 1.1e-131 | |
| UNIPROTKB|I3LTD5 | 1471 | WDR33 "Uncharacterized protein | 0.562 | 0.272 | 0.524 | 2.9e-131 | |
| UNIPROTKB|F1LT09 | 1327 | Wdr33 "Protein Wdr33" [Rattus | 0.562 | 0.302 | 0.525 | 1.3e-130 | |
| FB|FBgn0046222 | 807 | CG1109 [Drosophila melanogaste | 0.593 | 0.524 | 0.512 | 6.5e-122 |
| UNIPROTKB|Q5JKX0 B1147A04.35 "cDNA clone:J013000B23, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1535 (545.4 bits), Expect = 1.3e-176, Sum P(2) = 1.3e-176
Identities = 272/328 (82%), Positives = 295/328 (89%)
Query: 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239
MILQAHD A+RSM+WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRT
Sbjct: 1 MILQAHDQAVRSMIWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRT 60
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDA
Sbjct: 61 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDA 120
Query: 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359
KSGREL SFHGHKN+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTA
Sbjct: 121 KSGRELRSFHGHKNIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTA 180
Query: 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND 417
LAWHPFHEEYFVSGS DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCS ND
Sbjct: 181 LAWHPFHEEYFVSGSYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGND 240
Query: 418 HTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTR 477
H T+FWCRNRPGD RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+R
Sbjct: 241 HATRFWCRNRPGDLTRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSR 300
Query: 478 NEGTIPGVGVAMPLSIPSFDSSAQGEQK 505
NEGTIPG+GVAMPL D S GEQ+
Sbjct: 301 NEGTIPGIGVAMPL-----DGSDHGEQR 323
|
|
| DICTYBASE|DDB_G0295793 DDB_G0295793 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1294 (460.6 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 241/461 (52%), Positives = 315/461 (68%)
Query: 52 FHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATP 111
+ H SN Y A + KRMRK R+ VD+ ST+++Y R++QRD RD V+Q
Sbjct: 35 YSHQYSN--YHAAKIVYDGKRMRKAVVRKTVDFNSTLIKYNLARVYQRDYRDFAVVQPDQ 92
Query: 112 AAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLW 171
++LP +A NP TS ++F+HTS NK + IN V WTP GRRL+TGS SGEFTLW
Sbjct: 93 LYIREILPPIALESNPITSVCSRFIHTSSNKVKYPINCVSWTPEGRRLVTGSSSGEFTLW 152
Query: 172 NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES- 230
NG +FNFE ILQAHD A+RS++WSHN++WMVSGDD G IKYWQ NMNNVK K AH++S
Sbjct: 153 NGLTFNFETILQAHDSAVRSIIWSHNEDWMVSGDDSGNIKYWQPNMNNVKIFK-AHEQSK 211
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+R LSF TDLK SC+DD +K+WDFARC E+ L GHGWDVK V WHP KSL+VSGGK
Sbjct: 212 IRGLSFSPTDLKLASCADDKIIKIWDFARCTEDNQLVGHGWDVKCVSWHPQKSLIVSGGK 271
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350
D+ +K+WDAKS + + + HGHK+ V V+WNQNGNW+++AS DQ++K++DIR MKE+++F
Sbjct: 272 DNNIKIWDAKSSQNITTLHGHKSTVSKVEWNQNGNWIVSASSDQLLKVFDIRTMKEMQTF 331
Query: 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410
+GH K+VTALA HP+HE+ FVSG DG I +W+VG+ PQ EIH+ HD VW L+WHPIG
Sbjct: 332 KGHGKEVTALALHPYHEDLFVSGDKDGKILYWIVGNPEPQAEIHSAHDADVWSLSWHPIG 391
Query: 411 YLLCS--NDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
++L S NDHTTKFW RNRP DT +DK+N N +N A + LP G + P
Sbjct: 392 HILASGSNDHTTKFWSRNRPADTMKDKYN-NPNASKDIENEEDADDQESDLSLP-GLSLP 449
Query: 469 G--PFAPG-LTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQ 506
G + P ++ + + +M P Q +Q+Q
Sbjct: 450 GLGSYKPSPQLSSQNILQNLNYSMQQQQPQQQPQQQQQQQQ 490
|
|
| UNIPROTKB|E1BCT7 WDR33 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 214/407 (52%), Positives = 276/407 (67%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|F1PV59 WDR33 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 3.3e-132, Sum P(2) = 3.3e-132
Identities = 214/407 (52%), Positives = 276/407 (67%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|Q9C0J8 WDR33 "pre-mRNA 3' end processing protein WDR33" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 3.3e-132, Sum P(2) = 3.3e-132
Identities = 214/407 (52%), Positives = 276/407 (67%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| MGI|MGI:1921570 Wdr33 "WD repeat domain 33" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
Identities = 214/407 (52%), Positives = 276/407 (67%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|E1BT84 WDR33 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 219/438 (50%), Positives = 288/438 (65%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGT 481
FW RNRPGD RD++N+ G E + P + + G P + + E
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKIAMEQ-EQM 459
Query: 482 IPGVGVA--MPLSIPSFD 497
+ G + + ++IP D
Sbjct: 460 VKGKDESNDIEMTIPGLD 477
|
|
| UNIPROTKB|I3LTD5 WDR33 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1188 (423.3 bits), Expect = 2.9e-131, Sum P(2) = 2.9e-131
Identities = 214/408 (52%), Positives = 276/408 (67%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRV-LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH 185
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAH
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVGWWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAH 161
Query: 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS 245
D +R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +
Sbjct: 162 DSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFAT 220
Query: 246 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGR 303
CSDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 CSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQ 280
Query: 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAW 362
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AW
Sbjct: 281 SLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAW 340
Query: 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTT 420
HP HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+
Sbjct: 341 HPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTS 400
Query: 421 KFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
KFW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 KFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 448
|
|
| UNIPROTKB|F1LT09 Wdr33 "Protein Wdr33" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 214/407 (52%), Positives = 276/407 (67%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 38 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 97
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 98 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 157
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 158 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 216
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 217 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 276
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 277 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 336
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCS NDHT+K
Sbjct: 337 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 396
Query: 422 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 468
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 397 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 443
|
|
| FB|FBgn0046222 CG1109 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 221/431 (51%), Positives = 291/431 (67%)
Query: 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLP 119
P+ D F KR+RK R+ VDY +++++ ++ R++QRD RDR LQ MLP
Sbjct: 62 PFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLP 121
Query: 120 TVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE 179
AY DNPS + +FV T+ NK RC I + WTP GRRL+TG+ SGEFTLWNG +FNFE
Sbjct: 122 PSAYLDNPSNAVTTRFVKTATNKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFE 181
Query: 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239
ILQAHD ++R+MVWSHND+WMV+GD GG +KYWQ+NMNNVK + AHKE++R +SF T
Sbjct: 182 TILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMYQ-AHKEAIRGISFSPT 240
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLW 297
D KF S SDD T+++WDF RCQEER L GHG DVK V WHP K ++VSG KD+ +K+W
Sbjct: 241 DSKFVSGSDDGTLRIWDFMRCQEERVLRGHGADVKCVHWHPQKGMIVSGSKDNQQPIKIW 300
Query: 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKD 356
D KSG L + H HK+ V+ +KWN NGNW++TAS+D ++KL+DIR ++E ++ FRGH+K+
Sbjct: 301 DPKSGIALATLHAHKSTVMDLKWNDNGNWLVTASRDHLLKLFDIRNLREEVQVFRGHKKE 360
Query: 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS- 415
++++WHP HE F SG DGSI W VG + + HD+ VW LAWHP+G++LCS
Sbjct: 361 ASSVSWHPIHEGLFCSGGSDGSILFWNVGTDKEIGCVETAHDSIVWTLAWHPLGHILCSG 420
Query: 416 -NDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPG 474
NDHT KFW RNRPGD RDK+N+ N A+ GP F
Sbjct: 421 SNDHTIKFWTRNRPGDLMRDKYNL--NTLPASLAALDECEYDDAIIPGMGPEDRVEFTES 478
Query: 475 LTRNEGTIPGV 485
LT ++G IPG+
Sbjct: 479 LTADKGFIPGL 489
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6NLV4 | FY_ARATH | No assigned EC number | 0.6838 | 0.8555 | 0.9428 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 713 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-65 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-59 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-43 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-42 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-41 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-41 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-21 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-15 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 4e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 6e-07 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-06 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 9e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 3e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 3e-05 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 3e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 4e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-04 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 4e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-04 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 8e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.001 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.001 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.001 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.002 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.002 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 0.003 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.003 | |
| cd06309 | 273 | cd06309, PBP1_YtfQ_like, Periplasmic binding domai | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 7e-65
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 4/282 (1%)
Query: 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 203
+ V ++P G+ L TGS G +W+ ++ L+ H +R + S + ++ S
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
G I+ W + H V ++F S S D T+KVWD +
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128
Query: 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323
+L GH V SV + P + + S +D +KLWD ++G+ + + GH V V ++ +
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188
Query: 324 GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383
G +L++S D IKL+D+ K L + RGH V ++A+ P SGS DG+I W
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWD 247
Query: 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFW 423
+ + H N+V LAW P G L S D T + W
Sbjct: 248 LRTGECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 8e-59
Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%)
Query: 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241
L+ H + + +S + + +G G IK W + H VRD++
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301
S S D T+++WD + R+LTGH V SV + P +L S +D +K+WD ++
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361
G+ L + GH + V V ++ +G +V ++S+D IKL+D+R K + + GH +V ++A
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHT 419
+ P E +S S DG+I W + + H+N V +A+ P GYLL S D T
Sbjct: 185 FSP-DGEKLLSSSSDGTIKLWDL-STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 420 TKFW 423
+ W
Sbjct: 243 IRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 1e-43
Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 17/309 (5%)
Query: 126 NPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH 185
+ + S K + N S+ + + +G L+ +L + S ++L+ H
Sbjct: 9 SENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGH 64
Query: 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKF 243
+ +I S+ +S + ++SG G IK W + +K+ + H SV L+ D
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 244 ---CSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298
S S D TVK+WD + + R+L GH V S+ + P LL SG D +KLWD
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184
Query: 299 AKSGRELCSFHGHKNMVLCVKWNQNGNW-VLTASKDQIIKLYDIRAMKELES-FRGHRKD 356
++G+ L + GH + V + ++ +G + + S D I+L+D+ K L S GH
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--C 414
V + ++ P SGS DG+I W + + + + H ++V +A+ P G LL
Sbjct: 245 VVS-SFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 415 SNDHTTKFW 423
S+D T + W
Sbjct: 303 SSDGTVRLW 311
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 1e-42
Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 15/302 (4%)
Query: 134 KFVHTSLNKNRCSINRVLW-TPTGRRLITGSQSGEFT--LWNGQS-FNFEMILQAHDHAI 189
K + + + S++++ +P G ++ S S + T LW+ + L+ H ++
Sbjct: 99 KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV 158
Query: 190 RSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFC-RTDLKFCSCS 247
S+ +S + + SG G IK W + + H + V L+F L S S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218
Query: 248 DDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-EL 305
D T+++WD + + RS L+GH D + P SLL SG D ++LWD +S L
Sbjct: 219 SDGTIRLWDLSTGKLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL 277
Query: 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWH 363
+ GH + VL V ++ +G + + S D ++L+D+ K + +GH V++L++
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTK 421
P GS DG+I W + P + + V +++ P G ++ S D T +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 422 FW 423
W
Sbjct: 396 LW 397
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-41
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 16/261 (6%)
Query: 93 QIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT----SLNKNRC--- 145
I++W ++ + L T + VA + + + + T L C
Sbjct: 32 TIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88
Query: 146 ------SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN 199
++ V ++P GR L + S+ +W+ ++ L+ H + S+ +S +
Sbjct: 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148
Query: 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 259
++ S G IK W A + H V ++F K S S D T+K+WD +
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
Query: 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 319
+ +L GH V SV + P LL SG +D +++WD ++G + + GH N V +
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA 268
Query: 320 WNQNGNWVLTASKDQIIKLYD 340
W+ +G + + S D I+++D
Sbjct: 269 WSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 156 bits (394), Expect = 4e-41
Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 11/286 (3%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFT-LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VS 203
S+ + ++P G+ L +GS LW+ ++ L H + S+ +S + + S
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
G G I+ W + + + + SF S S D T+++WD
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 264 -RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGHKNMVLCVKW 320
R+L+GH V SV + P LL SG D V+LWD ++G+ L + GH+ V + +
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336
Query: 321 NQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379
+ +G+ +++ S D I+L+D+R K L++ GH +V ++++ P SGS DG++
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTV 394
Query: 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFW 423
W + + + H + V L + P G L S+D+T + W
Sbjct: 395 RLWDLSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-34
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321
R+L GH V V + P LL +G D +K+WD ++G L + GH V V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381
+G ++ + S D+ I+L+D+ + + + GH V+++A+ P S S D +I
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKV 119
Query: 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFW 423
W V + H + V +A+ P G + S D T K W
Sbjct: 120 WDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (339), Expect = 7e-34
Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 9/250 (3%)
Query: 139 SLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSH 196
+L + ++ + ++P G LI +GS G LW+ + L H ++ +S
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP 251
Query: 197 NDNWMVSGDDGGAIKYW-QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255
+ + + SG G I+ W + +++ S H SV ++F S S D TV++W
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 256 DFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHK 312
D + +L GH V S+ + P SLLVSGG D ++LWD ++G+ L + GH
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371
Query: 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372
N VL V ++ +G V + S D ++L+D+ L + GH VT+L + P + S
Sbjct: 372 N-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLAS 429
Query: 373 GSLDGSIFHW 382
GS D +I W
Sbjct: 430 GSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (321), Expect = 2e-31
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQAHDHAIRSM 192
K + ++L+ + S+ ++P G L +GS G LW+ S + L H ++ S+
Sbjct: 232 KLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 193 VWSHNDNWMVSGDDGGAIKYW--QNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSDD 249
+S + + SG G ++ W + H+ V LSF SDD
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 250 TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
T+++WD + ++L GH +V SV + P ++ SG D V+LWD +G L +
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342
GH + V + ++ +G + + S D I+L+D++
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.3 bits (238), Expect = 6e-21
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSH 196
+L+ + S+ V ++P G+ L +GS G LW+ ++ + L+ H+ + S+ +S
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 197 NDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255
+ + +VSG D G I+ W H +V +SF S S D TV++W
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308
D + R+L GH V S+D+ P L SG D+ ++LWD K+ + SF
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-15
Identities = 32/178 (17%), Positives = 42/178 (23%), Gaps = 5/178 (2%)
Query: 488 AMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQ 547
+ + + Q Q +P G PP P Q GY Q P P Q
Sbjct: 158 EVEAQLQQRQQAPQLPQPPQQVLPQGMPP-RQAAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
Query: 548 GHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHP 607
P A +P P P+ Q P Q+ P P P P
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ----FPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 608 MSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQ 665
+ P P + P PQ + Q
Sbjct: 273 QAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQ 330
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-14
Identities = 46/200 (23%), Positives = 57/200 (28%), Gaps = 12/200 (6%)
Query: 494 PSFDSSAQGEQKQPLSMPLGAP---PLPPGPHPSLLTANQ---QQGYQQNPPPMPPQQHQ 547
D S G +P P AP P P P +L+ + Q +Q P +P Q
Sbjct: 119 LQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQ 178
Query: 548 GHPQQMPHLAMP-PQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPT-PSS 605
PQ MP PQ P QPP + Q P Q +P LP
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238
Query: 606 HPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAP----PQVGGFPNGMQGPPNS 661
P + P S PP Q P P G P G P
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPP 298
Query: 662 SGPQMYPQGGAFNRPQGQMP 681
+ Q + P
Sbjct: 299 PQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 40/159 (25%), Positives = 44/159 (27%), Gaps = 12/159 (7%)
Query: 483 PGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHP-----SLLTANQQQGYQQN 537
L A Q+ P P G P P G L A Q Q
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231
Query: 538 PPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISR--PPPQMPQLGMPSP 595
PP PQQ P Q P Q MP PP Q P + PPPQ P
Sbjct: 232 LPPQLPQQPP--PLQQPQFPGLSQQMPP-PPPQPPQQQQQPPQPQAQPPPQNQPTPHPGL 288
Query: 596 MPGSLPT--PSSHPMSMPVPVGMQGSMNQMAPPMQQGHY 632
G P P +P+ QG Q
Sbjct: 289 PQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-09
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
SG L + GH V V ++ +G ++ + S D IKL+D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-09
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+ R+L GH V SV + P +LL SG D V++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 7e-09
Identities = 28/182 (15%), Positives = 37/182 (20%), Gaps = 8/182 (4%)
Query: 537 NPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQ----PPSHLPMLQHPHISRPPPQMPQLGM 592
P Q P Q P L P P +P ++
Sbjct: 96 KTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLS 155
Query: 593 PSPMPGSLPTPSSHPMS-MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGF 651
+ L P P + M Q P +
Sbjct: 156 LEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQ 215
Query: 652 PNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQS 711
P P+ + Q PQ P+ P S P PP Q
Sbjct: 216 PQQFLPAPSQAPAQPPLPP---QLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 712 QQ 713
Q
Sbjct: 273 QA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+ ++L GH V SV + P L SG D +KLWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-08
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
G+ L + GH V V ++ +GN + + S D ++++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 36/159 (22%), Positives = 45/159 (28%), Gaps = 17/159 (10%)
Query: 465 PTTPGPFAPGLTRNEGTIPG-------------VGVAMPLSIPSFDSSAQGEQKQPLSMP 511
P PGP P L PG A P P + + S
Sbjct: 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899
Query: 512 LGAPPLPPGPHPSLLTANQQQGYQQNPP-PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPS 570
L P P Q Q PP P PP PQ P LA +P
Sbjct: 2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ--PPLAPTTDPAGAGEPSG 2957
Query: 571 HLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMS 609
+P + +P+ +P P P S P+S
Sbjct: 2958 AVPQPWLGALVPGRVAVPRFRVPQPAP-SREAPASSTPP 2995
|
Length = 3151 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-07
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
K L + +GH VT++A+ P SGS DG++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-07
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
+ L++ +GH VT++A+ P +Y SGS DG+I W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 200 WMVSGDDG-GAIKYWQNNMNNVKANK-SAHKESVRDLSF--CRTDLKFCSCSDDTTVKVW 255
W V G GAI+ +N M K H S+ DL F C +++ S S+D T++VW
Sbjct: 45 WEVEGGGLIGAIRL-ENQMRKPPVIKLKGHTSSILDLQFNPCFSEI-LASGSEDLTIRVW 102
Query: 256 DFARCQEERS--------LTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELC 306
+ E L GH + +DW+P ++ S G DS V +WD ++ +
Sbjct: 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
Query: 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
+ K + +KWN GN + + + + D R + SF H
Sbjct: 163 QINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208
|
Length = 568 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 58/201 (28%), Positives = 68/201 (33%), Gaps = 22/201 (10%)
Query: 530 QQQGYQQNPP--PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP--MLQHPHISRPPP 585
Q Q QQ M PQQ QG Q+P PPQ PQ LP M Q P + P
Sbjct: 248 QAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGP 307
Query: 586 QMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAP 645
P +G P PG++P + V Q + QM +G GG
Sbjct: 308 GQP-MGPPPQRPGAVPQGGQA-VQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNH 365
Query: 646 PQVGGFPNGMQGPPNSSGPQMYPQGGAFNR-----------PQGQMPMMPGYNPFQS--G 692
P Q G QM G + QGQ MM +P
Sbjct: 366 PAAHQQQMNQQVGQ---GGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
Query: 693 NQSGMAPPPPPGPPPHGQSQQ 713
NQS PP P P P G Q
Sbjct: 423 NQSMPQPPQPSVPSPGGPGSQ 443
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 7e-07
Identities = 58/263 (22%), Positives = 70/263 (26%), Gaps = 16/263 (6%)
Query: 453 GRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL 512
P P TP P P R A P + G
Sbjct: 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP-------AVPAGPATPGGPARP 2757
Query: 513 GAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMP-PQNMPQLQPPSH 571
PP GP A G + + +P P L P +
Sbjct: 2758 ARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817
Query: 572 LPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGH 631
LP P PPP Q P P PG P P S P+ V G G + + P +
Sbjct: 2818 LPPAASPAGPLPPPTSAQPTAPPPPPG--PPPPSLPLGGSVAPG--GDVRRRPPS-RSPA 2872
Query: 632 YMGMNPMHSGGG--APPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPF 689
P A P V PP+ PQ +PQ Q P P P
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP- 2931
Query: 690 QSGNQSGMAPPPPPGPPPHGQSQ 712
PP P P G +
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGE 2954
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 8e-07
Identities = 39/259 (15%), Positives = 53/259 (20%), Gaps = 10/259 (3%)
Query: 464 GPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGP-- 521
GP T L G P + + G Q + P P
Sbjct: 106 GPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQ 165
Query: 522 -----HPSLLTANQQQGYQQNPP--PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPM 574
+ A QQ P PPQ Q Q P
Sbjct: 166 MGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQ 225
Query: 575 LQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMG 634
+Q ++ QM Q P+ + M G M
Sbjct: 226 MQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQ 285
Query: 635 MNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQ 694
+ + Q+ G G G P PQ P Q +M +
Sbjct: 286 QSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR-PGAVPQGGQAVQQGVMSAGQQQLKQMK 344
Query: 695 SGMAPPPPPGPPPHGQSQQ 713
Q
Sbjct: 345 LRNMRGQQQTQQQQQQQGG 363
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
H V ++F S SDD TV+VWD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 266 LTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324
L GH V V +HP+ ++L S G D +V +WD + G+ + H + + ++WN +G
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180
Query: 325 NWVLTASKDQIIKLYDIRAMKELESFRGH 353
+ + T SKD+ + + D R + S H
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209
|
Length = 493 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 38/192 (19%), Positives = 56/192 (29%), Gaps = 14/192 (7%)
Query: 452 AGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMP 511
AG + + + P +A ++P S A + P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836
Query: 512 LGAPPLPPGPHPSLLTAN---------QQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQN 562
APP PPGP P L +++ ++P P + +++ A+
Sbjct: 2837 T-APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
Query: 563 MPQLQPPSHLPMLQHPHISRPP---PQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 619
PP P PP PQ P P P P P P P G G
Sbjct: 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG-AGE 2954
Query: 620 MNQMAPPMQQGH 631
+ P G
Sbjct: 2955 PSGAVPQPWLGA 2966
|
Length = 3151 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAK 300
+ S + + V+VWD AR Q + H V S+D+ +LL SG D VKLW
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606
Query: 301 SGRELCSFHGHKNMVLCVKW-NQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVT 358
G + + N + CV++ +++G + S D + YD+R K L + GH K V+
Sbjct: 607 QGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHW 382
+ + VS S D ++ W
Sbjct: 666 YVRF--VDSSTLVSSSTDNTLKLW 687
|
Length = 793 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 37/180 (20%), Positives = 43/180 (23%), Gaps = 26/180 (14%)
Query: 455 MPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGA 514
+P P P P P P Q P P
Sbjct: 180 LPQGMP-PRQAAFPQQGPPEQPPGYPQPPQGHPEQV--------QPQQFLPAPSQAPAQP 230
Query: 515 PPLPPGPHPSLLTANQQQGYQQNPPPM----PPQQHQGHPQQMPHLAMPPQNMPQLQPPS 570
P P P Q QQ P P PQQ P P P+
Sbjct: 231 PLPPQLP-------QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 571 HLP-MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 629
P + Q + PPPQ PQL P +Q S Q Q+
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR-----EQLVQLSQQQREALSQE 338
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 27/123 (21%), Positives = 32/123 (26%), Gaps = 22/123 (17%)
Query: 585 PQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGA 644
P+M QL M SPM G++ P P QG Q G
Sbjct: 380 PRMRQLPMGSPMGGAMGQP---------PYYGQGPQ-QQFNGQPLGWPRMSMMP------ 423
Query: 645 PPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPG 704
P G GP +G A +R P P P
Sbjct: 424 ------TPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDL 477
Query: 705 PPP 707
P P
Sbjct: 478 PQP 480
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
H V ++F S SDD T+K+WD
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 66/246 (26%), Positives = 76/246 (30%), Gaps = 21/246 (8%)
Query: 486 GVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQ 545
G A+ S P SAQ Q + P P P P L + Q+ P P PP Q
Sbjct: 186 GAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQ 245
Query: 546 HQGHPQQMPHLAMPPQNMPQLQPPSHLPM-------------LQHPHISRPPPQ--MPQL 590
Q QQ P P P Q H P LQHP + P P
Sbjct: 246 PQTASQQSPQPPAPSSRHP--QSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQ 303
Query: 591 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGG 650
P P+P S P S Q Q PP ++ P P Q
Sbjct: 304 VPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHK 363
Query: 651 FPNGMQGP-PNSSGPQMYPQGGA---FNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPP 706
P +QGP P P P A + P P Q QS P PP
Sbjct: 364 HPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423
Query: 707 PHGQSQ 712
QSQ
Sbjct: 424 VLTQSQ 429
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 21/136 (15%), Positives = 28/136 (20%), Gaps = 12/136 (8%)
Query: 500 AQGEQKQPLSM----PLGAPPLPPGPHPSLLTANQQQGYQQNPPPM----PPQQHQGHPQ 551
Q + P P LP GP + Q Y P M P P
Sbjct: 82 DQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPA 141
Query: 552 QMPHLAM--PPQNMPQLQPPSHLPMLQHPHISRPPPQMP-QLGMPSPMPGSLPTPSSH-P 607
Q L P + Q P P G+ S
Sbjct: 142 QQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALV 201
Query: 608 MSMPVPVGMQGSMNQM 623
++ +
Sbjct: 202 RLREADGTLEQRIKGA 217
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 62/279 (22%), Positives = 81/279 (29%), Gaps = 52/279 (18%)
Query: 452 AGRMPGNF--PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 509
A PG P P+ P P AP + +E V M I + A + P
Sbjct: 2494 AAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDP-- 2551
Query: 510 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPP----QQHQGHPQQMPHLAMP------ 559
PPLPP P+ A + P P P P P A P
Sbjct: 2552 ----PPPLPPAAPPA---APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD 2604
Query: 560 PQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 619
+ PPS LP H PPP PSP P + P ++P P +
Sbjct: 2605 RGDPRGPAPPSPLPPDTHA--PDPPP-------PSPSPAANEPDPHPPPTVPPP---ERP 2652
Query: 620 MNQMAPPMQQGHYMGMNPMHSGG-----------GAPPQVGGFPNGMQGPPNSSGPQMYP 668
+ AP + A P VG + PP P+
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE--- 2709
Query: 669 QGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPP 707
P + P + Q+ A P P PP
Sbjct: 2710 -----PAPHALVSATPLPPGPAAARQASPALPAAPAPPA 2743
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 58/270 (21%), Positives = 66/270 (24%), Gaps = 42/270 (15%)
Query: 478 NEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP------------------ 519
+ + G MP I + + + P P+G P P
Sbjct: 58 AQQQVLQGGQGMPDPINALQNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSL 117
Query: 520 -------------GPHPSLLTANQQQGYQQNP--PPMPPQQHQGHPQQMPHLAMPPQNMP 564
GPH Q G Q Q P QM P Q
Sbjct: 118 NVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQM----GPQQGQA 173
Query: 565 QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP--VPVGMQGSMNQ 622
Q Q Q P + PPQM Q GMP P P Q NQ
Sbjct: 174 QGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQ 233
Query: 623 MAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPM 682
M Q G Q G P MQG Q P + Q M
Sbjct: 234 QQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLP 293
Query: 683 MPGYNPFQSGNQSGMAPPPPPGPPPHGQSQ 712
Q P P GPPP
Sbjct: 294 NQ---MQQMPGGGQGGPGQPMGPPPQRPGA 320
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-05
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 175 SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213
S L+ H + S+ +S + ++ SG D G IK W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 51/230 (22%), Positives = 57/230 (24%), Gaps = 22/230 (9%)
Query: 501 QGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLA--M 558
Q G + QQQ QQ P QQMP
Sbjct: 247 AQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGG 306
Query: 559 PPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQG 618
P Q M PP P + G L + QG
Sbjct: 307 PGQPMG---PPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQ-QQQQQG 362
Query: 619 SMNQMAPPMQQGHYMG----MNPMHSGGGAPPQVGGFPNGMQG--PPNSSGPQMYPQ--G 670
+ A Q +G M + Q G N MQ P S P PQ
Sbjct: 363 GNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
Query: 671 GAFNRPQGQM----PMMPGYNPFQSGNQSGMAPPPP---PGPPPHGQSQQ 713
Q P PG P QS GM P PP P P P
Sbjct: 423 NQSMPQPPQPSVPSPGGPGSQPPQSV-SGGMIPSPPALMPSPSPQMSQSP 471
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 27/132 (20%), Positives = 38/132 (28%), Gaps = 17/132 (12%)
Query: 516 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQP----PSH 571
P P Q Y Q P Q G P+ MP P +
Sbjct: 383 RQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSM---MPTPMGPGGPLRPNGLAP 439
Query: 572 LPMLQHPHISR-----PPPQMPQLGMPS----PMPGSLPTPSSHPMSMPVPVGMQGSMNQ 622
+ ++ P + PP P + P+ P+ LP P S S +
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTA-SQGGQNKKLAQVLA 498
Query: 623 MAPPMQQGHYMG 634
A P Q +G
Sbjct: 499 SATPQMQKQVLG 510
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 29/189 (15%), Positives = 46/189 (24%), Gaps = 27/189 (14%)
Query: 454 RMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVA----MPLSIPSFDSSAQ-------- 501
PE P G G+ +P + P++ + Q
Sbjct: 100 PHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
Query: 502 ------GEQKQPLSMPLGAPPLPPG---PHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQ 552
G Q+Q L P AP P P G + H
Sbjct: 160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
Query: 553 MPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPV 612
P + P+ P + PP+ + P + ++ P P
Sbjct: 220 RPR--RDRTDRPEPPPGAGHV----HRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPG 273
Query: 613 PVGMQGSMN 621
P +N
Sbjct: 274 PGEPTARLN 282
|
Length = 617 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 52/237 (21%), Positives = 61/237 (25%), Gaps = 23/237 (9%)
Query: 494 PSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQM 553
P + + LPP P P +QQQ Q P P Q Q
Sbjct: 50 PPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQS 109
Query: 554 PHLAMPPQNMPQLQPPSHL-----------------PMLQHPHISRPPPQMPQLGMPSPM 596
PQ P PPS + Q PP Q P P
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 597 PGSLPTPSS-HPMSMPVPVGMQGSMNQMAPPMQ-QGHYMGMNPMHSGGGAPPQVGGFPNG 654
S P S +P P + M Q Y G P G P
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQP----SPY 225
Query: 655 MQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQS 711
M G P +P G QGQ P GN +A P G +
Sbjct: 226 MYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYST 282
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 30/191 (15%), Positives = 43/191 (22%), Gaps = 22/191 (11%)
Query: 514 APPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP 573
P P P L Q P QQ P P P P
Sbjct: 54 QAPPPVAQLPQPLPQPPPTQALQ-ALPAGDQQQHNTPTGSPAANPPATFALPAGPAG--- 109
Query: 574 MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYM 633
P I P Q+ + +P + P + Q A Q Y
Sbjct: 110 ----PTIQTEPGQLYPVQVPVMVTQ-----------NPANSPLDQPAQQRALQQLQQRYG 154
Query: 634 GMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQ--- 690
+ +Q PN P G + + + + +
Sbjct: 155 APASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRI 214
Query: 691 SGNQSGMAPPP 701
G + G A
Sbjct: 215 KGAEGGGAMKV 225
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 41/214 (19%), Positives = 55/214 (25%), Gaps = 20/214 (9%)
Query: 460 PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP 519
PTT GP AP P G L+ P+ S ++ + P PP
Sbjct: 2756 RPARPPTTAGPPAPAPPA----APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811
Query: 520 GPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPP-----------QNMPQLQP 568
+ L PP P P ++P + P P
Sbjct: 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871
Query: 569 PSHLPMLQHPHISR-----PPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQM 623
+ P + R +P P P P + P P P Q
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931
Query: 624 APPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQG 657
PP + P GA G P G
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 54/265 (20%), Positives = 70/265 (26%), Gaps = 29/265 (10%)
Query: 438 MGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFD 497
M Q G Q V + P P + + P + G P+ P
Sbjct: 261 MQPQQMQGGQMQVPMQQQP---PQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR 317
Query: 498 SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLA 557
A + Q + + + L QQ QQ H QQM
Sbjct: 318 PGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQV 377
Query: 558 MPPQNM---PQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPV 614
M L + L + + P M M SP P + P P
Sbjct: 378 GQGGQMVALGYLNIQGNQGGLGANPMQQGQPGM----MSSPSPVPQVQTNQSMPQPPQP- 432
Query: 615 GMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFN 674
S+ P Q SGG P P S PQM Q A
Sbjct: 433 ----SVPSPGGPGSQP-----PQSVSGGMIPSPPALMP--------SPSPQMS-QSPASQ 474
Query: 675 RPQGQMPMMPGYNPFQSGNQSGMAP 699
R Q + PG G S +P
Sbjct: 475 RTIQQDMVSPGGPLNTPGQSSVNSP 499
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 38/184 (20%), Positives = 45/184 (24%), Gaps = 8/184 (4%)
Query: 438 MGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV--GVAMPLSIPS 495
+ + V AG + P PGP + P P S
Sbjct: 43 LVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR 102
Query: 496 FDSSAQGEQKQPLSMPLGAPPLPPGP-HPSLLTANQQQGYQQNPPP--MPPQQHQGHPQQ 552
S P P PP P P L+ + PPP PP
Sbjct: 103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAV 162
Query: 553 MPHLAMPPQNMPQLQ-PPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 611
A Q L P P PP SP P +P S S P
Sbjct: 163 ASDAASSRQAALPLSSPEETARAPSSP--PAEPPPSTPPAAASPRPPRRSSPISASASSP 220
Query: 612 VPVG 615
P
Sbjct: 221 APAP 224
|
Length = 1352 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 30/195 (15%), Positives = 41/195 (21%), Gaps = 21/195 (10%)
Query: 498 SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP--QQMPH 555
S L PL PP QQ P P P P
Sbjct: 52 SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111
Query: 556 LAMPPQNMPQLQPPSHLPM------LQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMS 609
+ P + +Q P + L P R Q+ Q P S PS +
Sbjct: 112 IQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQ---RYGAPASGQLPSQQQSA 168
Query: 610 MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQ 669
+ + Q G + G +
Sbjct: 169 QKND---ESQLQQQPNGETP-----PQQTDGAGDDESEALVRLREADGTLEQRIKGA--E 218
Query: 670 GGAFNRPQGQMPMMP 684
GG + Q
Sbjct: 219 GGGAMKVLKQPKKQA 233
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 245 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304
S D V VWD R + + H + S++W+ SLL + KD + + D + G
Sbjct: 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202
Query: 305 LCSFHGHKNM--VLCVKWNQNGNWVLT--ASKDQI--IKLYDIRAM 344
+ S H + C+ W + + ++T SK Q I L+D R M
Sbjct: 203 VSSVEAHASAKSQRCL-WAKRKDLIITLGCSKSQQRQIMLWDTRKM 247
|
Length = 493 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 488 AMPLSIPSFD-SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQH 546
A P S+ F+ S + PL P + P P A QQQ Q P P Q+
Sbjct: 719 ANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQY 778
Query: 547 QGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSH 606
Q PQQ +A PQ QP + P Q P P PQ P P P
Sbjct: 779 Q-QPQQ--PVAPQPQYQQPQQPVAPQPQYQQPQ----QPVAPQPQYQQPQQPVAPQPQYQ 831
Query: 607 PMSMPVPVGMQGSM 620
PV Q ++
Sbjct: 832 QPQQPVAPQPQDTL 845
|
Length = 1355 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 53/188 (28%), Positives = 62/188 (32%), Gaps = 40/188 (21%)
Query: 529 NQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMP 588
N+QQ + +P Q P + +A PQ PQ+QP R PQ
Sbjct: 123 NEQQAIEIDPTEEVNTQEPTQPAGVN-VANNPQ--PQVQPQ-----FGPNPQQRINPQRF 174
Query: 589 QLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQV 648
M M GM+ NQM P H GM P G P
Sbjct: 175 GFPMQPNM------------------GMRPGFNQMPP-----HMPGMPPNQMRPGFNPMP 211
Query: 649 G-----GFPNGMQGPPNSSGPQMYPQGGAFNRPQG----QMPMMPGYNPFQSGNQSGMAP 699
G GF PN + P PQ G FN P M PG+NP Q N
Sbjct: 212 GMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPHMA 271
Query: 700 PPPPGPPP 707
P G PP
Sbjct: 272 GPRAGFPP 279
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213
L+ H + S+ +S + N + SG D G ++ W
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 17/108 (15%)
Query: 497 DSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQ-----QHQGHPQ 551
D+S KQ + P P PS A Q + P Q G P
Sbjct: 368 DASGGRGPKQHIKPVFTQPA--AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425
Query: 552 QMPHL------AMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMP 593
+ PP PQ P+ + P ++ LG
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI----PVSKVSSLGPS 469
|
Length = 614 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 26/146 (17%), Positives = 35/146 (23%), Gaps = 10/146 (6%)
Query: 436 FNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN-EGTIPGVGVAMPLSIP 494
Q + +P P P P + PG+ MP P
Sbjct: 201 PGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP---P 257
Query: 495 SFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMP 554
Q +Q+ P PP Q PPP PQ Q
Sbjct: 258 PPPQPPQQQQQPPQPQAQP-PPQNQPTPH---PGLPQGQNAPLPPPQQPQLLPLVQQPQG 313
Query: 555 HLAMP--PQNMPQLQPPSHLPMLQHP 578
P + + QL + Q
Sbjct: 314 QQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 390 QVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFW 423
+ H V +A+ P G LL S+D T + W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 25/174 (14%), Positives = 34/174 (19%), Gaps = 8/174 (4%)
Query: 456 PGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAP 515
P P P G + T G A P + + + G Q L
Sbjct: 63 PQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPV 122
Query: 516 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPML 575
+P + + Q QQ QQ G P Q Q Q
Sbjct: 123 QVPVMVTQNPANSPLDQPAQQRALQQ-LQQRYGAPAS-------GQLPSQQQSAQKNDES 174
Query: 576 QHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 629
Q Q ++Q
Sbjct: 175 QLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLKQ 228
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 21/146 (14%), Positives = 28/146 (19%), Gaps = 28/146 (19%)
Query: 583 PPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG 642
P P +P P+P PT + + Q G +
Sbjct: 53 PQAPPPVAQLPQPLPQPPPTQALQAL-------------PAGDQQQHNTPTGSPAANPPA 99
Query: 643 GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFN-------RPQGQMP--------MMPGYN 687
G +Q P P P N +P Q P
Sbjct: 100 TFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASG 159
Query: 688 PFQSGNQSGMAPPPPPGPPPHGQSQQ 713
S QS
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETP 185
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 38/174 (21%), Positives = 52/174 (29%), Gaps = 8/174 (4%)
Query: 506 QPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQ 565
QP + PP P + QQ YQQNPPP Q PQ+ P
Sbjct: 135 QPQAQQPQPPPQVP-QQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPP 193
Query: 566 LQPPSHLPMLQHPHISRPPPQ------MPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 619
+P +Q P+ PP Q P M PG P P P Q
Sbjct: 194 NEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG-PGGRPNSGFPSGQQPPPSQGQEG 252
Query: 620 MNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAF 673
PP +G++ + G + +P+ M +
Sbjct: 253 YGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMSSAPMSG 306
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 37/173 (21%), Positives = 54/173 (31%), Gaps = 25/173 (14%)
Query: 538 PPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMP 597
PP + ++ Q+ H+ P + LP+ P +PPP+ P P P
Sbjct: 654 PPQVEITPYKPTWTQIGHI---PYQPSPTGANTMLPIQWAPGTMQPPPRAPT---PMRPP 707
Query: 598 GSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQG 657
+ P + P + A P P + G A P P +
Sbjct: 708 AAPPGRAQRPAAATGR----------ARPPAAAPGRARPPAAAPGRARPPAAA-PGRARP 756
Query: 658 PPNSSGPQMYPQ---GGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPP 707
P + G P G +P Q P P P + P PPP P
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP-----RGAPTPQPPPQAGP 804
|
Length = 991 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 58/262 (22%), Positives = 74/262 (28%), Gaps = 18/262 (6%)
Query: 453 GRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL 512
GR P+ P + P P P SA P +
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 513 GAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHL 572
+P LP P P + A P PP G P P A P P+ +
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTT-AGPPAPAPP-AAPAAGPPRRLTRPAV 2788
Query: 573 PMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPV-PVGMQGSMNQMAPPMQQGH 631
L S P P P P P + P + P P+ S APP G
Sbjct: 2789 ASLSESRESLPSPWDPA---DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 632 YMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQS 691
P+ GG P G + P S + A RP + P
Sbjct: 2846 PPPSLPL--GGSVAP---GGDVRRRPPSRSPAAKP----AAPARPPVRRLARP---AVSR 2893
Query: 692 GNQSGMAPPPPPGPPPHGQSQQ 713
+S PP P PP Q+
Sbjct: 2894 STESFALPPDQPERPPQPQAPP 2915
|
Length = 3151 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 59/234 (25%), Positives = 68/234 (29%), Gaps = 16/234 (6%)
Query: 483 PGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPH--PSLLTANQQQGYQQNPPP 540
P A P S SA Q+ P PL PP P PH P T Q Q + P
Sbjct: 308 PLPSQAQPHSHTPPSQSALQPQQPPREQPL--PPAPSMPHIKPPPTTPIPQLPNQSHKHP 365
Query: 541 MPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSL 600
Q PQ +L PP P P+H P HP + PQ L P L
Sbjct: 366 PHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVL 425
Query: 601 PTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPN 660
S P P Q + G PP + P P
Sbjct: 426 TQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGG--LPAIGPPPSL---PTSTPAAPP 480
Query: 661 SSGPQMYPQGGAFNRPQGQMPMMPGYNPFQ-------SGNQSGMAPPPPPGPPP 707
+ P G A G P P Q + PPPP P P
Sbjct: 481 RASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSP 534
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 461 LPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPG 520
L +GP P F P + + V P + Q + +QP P P
Sbjct: 736 LDDGPHEP-LFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ---PVAPQPQY 791
Query: 521 PHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPM--LQHP 578
P A Q Q YQQ P+ PQ PQQ P P PQ QP + P L HP
Sbjct: 792 QQPQQPVAPQPQ-YQQPQQPVAPQPQYQQPQQ-PVAPQPQYQQPQ-QPVAPQPQDTLLHP 848
Query: 579 HISRP----PPQMPQLGMPS 594
+ R P P +PS
Sbjct: 849 LLMRNGDSRPLHKPTTPLPS 868
|
Length = 1355 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 36/169 (21%), Positives = 44/169 (26%), Gaps = 11/169 (6%)
Query: 515 PPLPPGP-HPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP 573
PP P P P + Q P + P A P P P
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756
Query: 574 MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYM 633
P +RPP P P P P + P P P P P PP M
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP---------QPPPQAGPTSM 807
Query: 634 GMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQM-YPQGGAFNRPQGQMP 681
+ P + G P + G P + P G P
Sbjct: 808 QLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTP 856
|
Length = 991 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 30/154 (19%), Positives = 42/154 (27%), Gaps = 19/154 (12%)
Query: 474 GLTRNEGTIPGVGVAMPLSIPSF-DSSAQGEQKQPLSMPLGAPP--LPPGPHPSLLTANQ 530
G N G + D+S GE P S PP P P +
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204
Query: 531 QQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQL 590
+ PP P PP + PS P P P +
Sbjct: 205 SSPSDSSLPPAPS----SFQSD-----TPPPSPESPTNPSPPP-------GPAAPPPPPV 248
Query: 591 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMA 624
P+ + PTP S + G+ + +A
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGGITLDDDAIA 282
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.003
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 397 HDNTVWDLAWHPIGYLL--CSNDHTTKFW 423
H V +A+ P G L S+D T K W
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 616 MQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR 675
+Q Q+ P M+Q +PM G P G Q P +P
Sbjct: 371 LQDQFMQLQPRMRQLPMG--SPM-GGAMGQPPYYGQGPQQQFNGQ---PLGWP------- 417
Query: 676 PQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQSQ 712
M P +G+AP P
Sbjct: 418 --RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQN 452
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 35/135 (25%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 507 PLSMPLGAPPLPPGPHPSLLTANQ----QQGYQQNPPPMPPQQHQGHPQQMP-------H 555
P+ P+ P P P Q Q YQQ P+ PQ PQQ
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 556 LAMPPQNMPQLQPPSHL----PMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 611
P PQ Q P P Q P P L P M P P + P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKP-TTP 865
Query: 612 VPVGMQGSMNQMAPP 626
+P S++ + PP
Sbjct: 866 LP-----SLDLLTPP 875
|
Length = 1355 |
| >gnl|CDD|107304 cd06309, PBP1_YtfQ_like, Periplasmic binding domain of ABC-type YtfQ-like transport systems | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN 199
I SQ+G+FT G+ E +L+AH I V++HND
Sbjct: 158 IVASQTGDFTRAKGKEV-MEALLKAHGDDI-DAVYAHNDE 195
|
Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. Length = 273 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.98 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.98 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.87 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.87 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.82 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.78 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.69 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.64 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.62 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.61 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.59 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.54 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.54 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.54 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.5 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.49 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.49 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.49 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.46 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.43 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.43 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.43 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.42 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.41 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.39 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.35 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.35 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.32 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.31 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.28 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.28 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.26 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.24 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.22 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.22 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.21 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.2 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.19 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.19 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.19 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.19 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.18 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.18 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.15 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.14 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.13 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.13 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.11 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.09 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.08 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.04 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.01 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.0 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.98 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.98 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.96 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.96 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.95 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.95 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.94 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.93 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.89 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.86 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.84 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.83 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.79 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.79 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.76 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.73 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.7 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.7 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.68 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.68 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.67 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.63 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.62 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.51 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.49 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.49 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.48 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.42 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.41 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.41 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.34 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.33 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.33 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.32 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.32 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.32 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.31 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.28 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 98.25 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.24 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.2 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.2 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.19 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.17 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.17 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.16 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.14 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.11 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.09 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.09 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.06 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.04 | |
| PRK10115 | 686 | protease 2; Provisional | 97.98 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.97 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.92 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.91 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.91 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.9 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.88 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.87 | |
| PRK10115 | 686 | protease 2; Provisional | 97.86 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.79 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.74 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.72 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.72 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.72 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.67 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.62 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.59 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.59 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.58 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.57 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.57 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.54 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.52 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.49 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.48 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.48 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.46 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.46 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.45 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.44 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.4 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.4 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.4 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.33 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.32 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.3 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.26 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.24 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.23 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.22 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.1 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.04 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.02 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.0 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.95 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.92 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.9 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.86 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.86 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.83 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 96.79 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.79 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.78 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.69 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.68 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.67 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.66 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 96.58 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.51 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.5 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.5 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 96.5 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.47 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.46 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.28 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 96.26 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.25 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.23 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 96.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.2 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.16 | |
| PLN02153 | 341 | epithiospecifier protein | 96.11 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.08 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.05 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 96.04 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.88 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.83 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 95.83 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 95.79 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.77 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.69 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.64 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.61 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 95.55 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.55 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 95.54 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 95.5 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 95.47 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.44 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.39 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.38 | |
| PLN02193 | 470 | nitrile-specifier protein | 95.34 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 95.33 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.31 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.29 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 95.27 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.19 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 95.04 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.88 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.87 | |
| PLN02153 | 341 | epithiospecifier protein | 94.84 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.83 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.81 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.77 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.71 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 94.7 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.67 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 94.62 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 94.61 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 94.56 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.56 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.51 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.49 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 94.48 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.47 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.37 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.35 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 94.28 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.25 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 94.22 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.21 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 94.0 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 93.96 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.83 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.82 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 93.82 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.82 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.8 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 93.73 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.68 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.59 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 93.57 |
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=446.04 Aligned_cols=375 Identities=59% Similarity=1.073 Sum_probs=355.6
Q ss_pred chhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEeeCCCCCc
Q 005123 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCS 146 (713)
Q Consensus 67 ~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~H~~~ 146 (713)
..+++|+++...|+.|||.+.++++.+.|.|+.. +++.+++....+.+++++...+..+....+..+|++...++-++.
T Consensus 20 ~~~g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~ 98 (464)
T KOG0284|consen 20 KEDGKRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCP 98 (464)
T ss_pred cccCccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEeccccccccc
Confidence 3456999999999999999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
|..|.|.|+|+.|++|+..|.+.||+..+...+..+..|++.|+++.|+.++.++++|+.+|.|++|+.+...+......
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ah 178 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAH 178 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHh
Confidence 99999999999999999999999999999888889999999999999999999999999999999999988877766666
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
|.+.|++++|++++..|++|++||+|+|||....+..+.+.+|...|++++|+|...+|+++++|..|++||.+++.++.
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++..|+..|..+.|++++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|....+|++|+.||.|.+|.+..
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCccccccccCCcc
Q 005123 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTARDKFNMGQNQ 442 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 442 (713)
.+.+..+..+|+..|++++|+|-|.+||+ .|.++++|..+++++.....+......
T Consensus 339 ~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~~~~~~~~~ 396 (464)
T KOG0284|consen 339 EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDKNADDVGLSNNE 396 (464)
T ss_pred cccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCcccccccccccc
Confidence 88888888999999999999999999987 999999999999999887765544443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=373.70 Aligned_cols=285 Identities=28% Similarity=0.520 Sum_probs=259.4
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..++.+|.+.|.|+.|+|+|+.||+|+.|.++++||+.+.....+.++|...|.||+|+|||+.||+|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc-eeeeeccCCCCeeEEEEec-----CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 217 MNN-VKANKSAHKESVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 217 ~~~-~~~~~~~~~~~V~~l~fs~-----dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+++ ....+.+|...|++|+|.| ..++|++++.||+|+|||+..+.++..+.+|...|+||.|--+ .+|++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCC
Confidence 875 4567889999999999965 5678999999999999999999999999999999999999754 48999999
Q ss_pred CCcEEEEECCCCceEEEEc-------------------------------------------------------------
Q 005123 291 DSLVKLWDAKSGRELCSFH------------------------------------------------------------- 309 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~------------------------------------------------------------- 309 (713)
|++|++|+...|++.++++
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999987665443333
Q ss_pred ------------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 310 ------------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 310 ------------------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+|...|+.+.||||+++||+++-|+.|++||-++|+.+.+|++|-..|+.++|+. +.++|+
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlV 425 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLV 425 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEE
Confidence 2344588999999999999999999999999999999999999999999999999 899999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
+||.|.++++||+++.+.. .-+-+|.+.|.++.|++||..+|| .|..++||.
T Consensus 426 S~SkDsTLKvw~V~tkKl~-~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKKLK-QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EcCCCceEEEEEeeeeeec-ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999876644 445579999999999999999987 899999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=362.17 Aligned_cols=283 Identities=25% Similarity=0.412 Sum_probs=270.0
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+...+|..+.|+.|++.||||+.+|.++||+..+...+.++.+|.+.|.++.|+|. +..|++|+.||+|++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356789999999999999999999999999999999999999999999999999997 568999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
..+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+|+|++||.++++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
+++++++..+.+|...|.+|+|+|+|-.||||+.|++++|||++..+++.++.+|.+-|+.|+|+|..+.+|+|++.|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 379 I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++||...+.. .++.+.+|++.|.++++++|+.++++ .|+++|+|.
T Consensus 412 ~kiWs~~~~~-~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWS-PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcc-cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999986554 56677799999999999999977765 999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=328.90 Aligned_cols=285 Identities=25% Similarity=0.401 Sum_probs=265.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+.|++|.++|.++.|+.|.++|++++.||.+.|||.-+.+.+..+..-...|..++|+|.++++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEe
Q 005123 217 MN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (713)
Q Consensus 217 ~~------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs 289 (713)
+. .+.+.+.+|...+.++.|.. +..|++++.|.++.+||+++++.+..|.+|.+.|.+|+++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 65 45667889999999999986 56799999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCC
Q 005123 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHE 367 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~ 367 (713)
.|+..+|||+|.+.++.+|.+|.+.|++|+|.|+|.-|++|++|+++++||+|....+..|... ...|++++||. .+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 9999999999999999999999999999999999999999999999999999999998888732 25799999999 89
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++|++|..|.++.+||.-+.+ .+.++.+|++.|++|..++||..+|+ .|.++|||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e-~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGE-RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccc-eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999985544 56677799999999999999999986 999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=306.33 Aligned_cols=290 Identities=21% Similarity=0.314 Sum_probs=251.1
Q ss_pred eEEEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCC-----CceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 134 KFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t-----~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
..++.++++|++.|+.++.... -+.|++++.|.++.+|++.. +...+.+++|+..|..+..++|+++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3456789999999999999987 46788999999999998654 56688999999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-CCceEEEEEcCC--CCE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPT--KSL 284 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-~~~V~sl~~spd--g~~ 284 (713)
+++++||+.+++....+.+|...|.+++|++|++.|++++.|++|++||+............ .+.|.|+.|+|+ .-+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999999999999999999999999998765444333332 789999999997 679
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
|++++.|++|++||+++.+....+.+|.+.++.+++|+||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp 243 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP 243 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999988776 788999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCceEEEecc--------cCCCeEEEEEcCCCcEE-EE-eCCcEEEEecC
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--------HDNTVWDLAWHPIGYLL-CS-NDHTTKFWCRN 426 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--------h~~~V~~l~~spdg~~l-aS-~Dg~v~iWd~~ 426 (713)
+...|+.+ .+-.|+|||+++...+..+... ..-...+++|+.||..| +. .|+.|++|.+.
T Consensus 244 -nrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 -NRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -CceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 55555544 4557999999877654433211 12345678999999666 44 99999999874
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=325.27 Aligned_cols=247 Identities=22% Similarity=0.378 Sum_probs=239.6
Q ss_pred EEEeeCCCCCceEEEEEccC--CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd--g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+|.+|.+.|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|++++.|.+-++|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 44679999999999999997 5689999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
|++++..+....+|...|.+|+|.+||.++++|+.|..-+|||++++.++..+.+|...|.+|+|+|+|..|++|+.|++
T Consensus 289 D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
++|||++..+.+.++.+|.+-|+.|+|++ .|.+|++++.|++++||..+++.+++++.+|++.|.++.+++ ++.+|++
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIAT 447 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEE
Confidence 99999999999999999999999999998 789999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
++.|.+|++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=312.77 Aligned_cols=290 Identities=25% Similarity=0.462 Sum_probs=255.4
Q ss_pred hceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCcee--------------eeEEEEeeCCCCCceEEEEEcc
Q 005123 89 VRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA--------------AKFVHTSLNKNRCSINRVLWTP 154 (713)
Q Consensus 89 ~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~l~~H~~~V~~v~~sp 154 (713)
..+.+.|+|+.+.+.... +...+..-+-.++++++...... ...+.+.|.+|+..|++++|.|
T Consensus 134 sGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred CCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence 355689999988765322 22344455566777777655443 2334578999999999999976
Q ss_pred -----CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC
Q 005123 155 -----TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE 229 (713)
Q Consensus 155 -----dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~ 229 (713)
..++||+++.||.|+|||+..+.++..+.+|+..|+||+|-- ..+|++|+.|++|++|+...+.+..++++|..
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccch
Confidence 568999999999999999999999999999999999999963 36999999999999999999999999999999
Q ss_pred CeeEEEEec-----------CC-------------------------CEEEEEECCCeEEEEEcCC-CeeEEEEccCCCc
Q 005123 230 SVRDLSFCR-----------TD-------------------------LKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWD 272 (713)
Q Consensus 230 ~V~~l~fs~-----------dg-------------------------~~Las~s~Dg~I~iwDl~~-~~~~~~l~~h~~~ 272 (713)
.|+.|+++- .+ ..|++|++|.++.+|+-.. .+.+..+.+|..-
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l 369 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL 369 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence 999998872 12 3499999999999999744 4578888999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
|+.+.|+||+++|++++.|..|++||.++|+.+.+|.+|-..|..++|+.|.++|++|+.|.++++||+++.+....+.+
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG 449 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG 449 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
|.+.|.++.|+| ++..+++|+.|..+++|.
T Consensus 450 h~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 999999999999 899999999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=303.49 Aligned_cols=285 Identities=29% Similarity=0.508 Sum_probs=259.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.++++|++.|++++|++++++|++++.||.|++||+.+.+....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
++....+..+...|.++.|+++++++++++.|+.|++||+++.+....+..|...|.+++|++++.++++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999888888888899999999999998888888889999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
|+++++.+..+..+...|.+++|+++++.|++++.|+.|++||+++++.+..+..|...|.+++|++ ++.++++++.||
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCC
Confidence 9999998888888888999999999999999999999999999999999998888999999999999 588888888899
Q ss_pred cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEe
Q 005123 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWC 424 (713)
Q Consensus 378 ~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd 424 (713)
.|++||+.+..... .+..|...|.+++|++++.+++ +.|+.|++|+
T Consensus 242 ~i~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQ-TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEE-EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999997655443 4447888999999999976654 3999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=304.42 Aligned_cols=291 Identities=22% Similarity=0.365 Sum_probs=266.8
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+.+.+|.+.|.||++.|-+.+|++|+.|++|+|||+.++++..++.+|-..|..+++|....||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+.+++++.+.+|-+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.+|.+.+.+-.+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
+||++.++...++..|+..|.+++.+|....||+++.|. |+-|++..++.+..+.+|...|.+++.+. +.++++|++
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns--D~v~~~G~d 379 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS--DGVLVSGGD 379 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc--CceEEEcCC
Confidence 999999999999999999999999999999999998875 99999999999999999999999999875 678999999
Q ss_pred CCcEEEEEcCCCCceEEEe-------cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 376 DGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+|.|.+||.+++....... ...+..|++.+|+..+..|.+ .|.+|++|.-+...
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 9999999998775433321 113567999999999966554 99999999765443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=307.71 Aligned_cols=288 Identities=20% Similarity=0.377 Sum_probs=268.3
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+...+.+|+..|+.+.|+|+-..+++++.|++|++||..+++++..+++|.+.|.+|+|+..|++|++++.|=.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++ .++++.+.+|+..|.+++|-|.+.+|++++.|.+|+.||+.++.++.++.+|...|..+..+.||.++++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 56777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCC----------C-----CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQN----------G-----NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspd----------g-----~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
++|-+.++.+...+..|...|.|++|.+. + .++++++.|++|++||+.++.++.++.+|...|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999998899999999999999753 2 48999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
++|+| ++++|+++.+|+++++||+++.... ..+..|...|++++|+.+..++++ -|.++++|..
T Consensus 340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSP-GGKYILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcC-CCeEEEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999 9999999999999999999877654 445589999999999999877765 8999999964
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=304.95 Aligned_cols=290 Identities=21% Similarity=0.407 Sum_probs=251.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
...++..|..-|+|+.|+|||+++|+++.||+|+|||-.+++.+..+. .|++.|.+|+|+||+..|++++.|.+++|
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 356788899999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred EEcCCCceeee-------------------------------------------eccCCCCeeEEEEecCCCEEEEEECC
Q 005123 213 WQNNMNNVKAN-------------------------------------------KSAHKESVRDLSFCRTDLKFCSCSDD 249 (713)
Q Consensus 213 wdl~~~~~~~~-------------------------------------------~~~~~~~V~~l~fs~dg~~Las~s~D 249 (713)
||+.+.+++.+ +.+|...|+++..++|+++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 99877654433 24788999999999999999999999
Q ss_pred CeEEEEEcCCCeeE-----------EE--------------------E--------------------------------
Q 005123 250 TTVKVWDFARCQEE-----------RS--------------------L-------------------------------- 266 (713)
Q Consensus 250 g~I~iwDl~~~~~~-----------~~--------------------l-------------------------------- 266 (713)
|.|.-||+.++..- .. +
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999998543211 00 0
Q ss_pred ----------cc--------CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCE
Q 005123 267 ----------TG--------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 267 ----------~~--------h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~ 326 (713)
.. ......+++++++++.+++|+.|++|+||.+..... ...+..|.+.|++++||||+.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 00 001245788999999999999999999999987543 3345679999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeE-EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEE
Q 005123 327 VLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l-~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (713)
||++...+.|.+||+.+.+.. ..+.-|...|.+++|+| ++.++|+|+.|-.|.||+++.....+.+..+|...|+.+.
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~ 580 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVA 580 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEE
Confidence 999999999999999987764 33445999999999999 8899999999999999999988888888999999999999
Q ss_pred EcCCCcEEEE-eCCcEEEEecC
Q 005123 406 WHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 406 ~spdg~~laS-~Dg~v~iWd~~ 426 (713)
|..+..++.+ .|.+||+|++.
T Consensus 581 wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 581 WLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EecCceEEeccCcceeEEeccc
Confidence 9999888766 99999999863
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=307.06 Aligned_cols=278 Identities=24% Similarity=0.483 Sum_probs=254.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
+..|++++|+.+|++||+|+.||.++||+.. +.++.++..|++.|.+|.|+.+|++|++++.|+++.+||..++.....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 4579999999999999999999999999965 677888999999999999999999999999999999999999999998
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
+..|...-.++.|-. ...|++++.|+.|+|+.+.....+.++.+|.+.|.+|.|++.+.+|+++++|++++||+.....
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 888888878899974 4568999999999999999989999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCCeEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 304 ELCSFHGHKNMVLCVKWNQNG---------NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fspdg---------~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
....+..|...|..+.|+|+| ..|++++.|++|++||+..+.++++|..|..+|.+++|++ +++++|+|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 999999999999999999854 5689999999999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
.||.|.||++.+.+...... ..+.|..|+|+.+|..|+. .|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999998776444333 3667999999999977754 99999998873
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=285.25 Aligned_cols=284 Identities=21% Similarity=0.438 Sum_probs=244.2
Q ss_pred EEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCC---CceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS---FNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t---~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..+.+.+|++.|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|++++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678999999999999998 89999999999999999884 3444444 4699999999999999999999999999
Q ss_pred EEEEcCCC--ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---CeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 211 KYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 211 ~vwdl~~~--~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
.||.-..+ +++.++.+|...|.+++|+.+|++||+|+.|+.|.||.+.. .+++..+..|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987654 67888999999999999999999999999999999999863 35678889999999999999999999
Q ss_pred EEEeCCCcEEEEECC---CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 286 VSGGKDSLVKLWDAK---SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~---t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++++.|++|++|+-. ...++.++.+|.+.|.+++|++.|..|++++.|++|+||.+.+. .-..|...++.+.|
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPW 241 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeee
Confidence 999999999999765 35688999999999999999999999999999999999987632 12347788999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCC------CceEEEecccCCCeEEEEEcCC--CcEEE-EeCCcEEEEecC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPI--GYLLC-SNDHTTKFWCRN 426 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~------~~~~~~~~~h~~~V~~l~~spd--g~~la-S~Dg~v~iWd~~ 426 (713)
. ...|++++.|+.|++|..... +........|+..|+++.|++. ++++. ++||.|++|.+.
T Consensus 242 ~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 568999999999999987542 1123345679999999999994 34443 499999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=328.88 Aligned_cols=246 Identities=20% Similarity=0.416 Sum_probs=232.3
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC-------------------------------ceEEEEeccCCCEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------------------------NFEMILQAHDHAIR 190 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-------------------------------~~~~~l~~h~~~V~ 190 (713)
.....|+|+.|+.|++.||.|..|..|++|.+... ...+++.+|.+.|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 34456999999999999999999999999986621 12345789999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
.+.|+|+.++|+++++|++|++|.+.+...+..+++|...|+++.|+|.|-+||+++.|++.++|.......++.+.+|.
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
+.|.|+.|+|+.+++++|+.|.+|++||+.+|..++.|.+|.+.|++++|||+|++|++|+.|+.|+|||+.+++.+..+
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+|++.|.++.|+. ++.+||+++.|.+|++||+....
T Consensus 616 ~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999 89999999999999999986543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=287.73 Aligned_cols=292 Identities=25% Similarity=0.387 Sum_probs=244.1
Q ss_pred CCCCCCcchhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEe
Q 005123 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (713)
Q Consensus 60 ~~~~~~~~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 139 (713)
.+++|.+++.+.++. ....+......|+..+-+|+..+.+... -...+.
T Consensus 10 tl~gh~d~Vt~la~~----~~~~~~l~sasrDk~ii~W~L~~dd~~~---------------------------G~~~r~ 58 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIK----IKNSDILVSASRDKTIIVWKLTSDDIKY---------------------------GVPVRR 58 (315)
T ss_pred eecCCCceEEEEEee----cCCCceEEEcccceEEEEEEeccCcccc---------------------------Cceeee
Confidence 356666666553332 2233444455677888888876542100 113457
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
+++|...|+.++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|++....
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c 138 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC 138 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred eeeeeccC-CCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 220 VKANKSAH-KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 220 ~~~~~~~~-~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
........ .+.|+|+.|+|+ +.+|++++.|++|++||+++.+....+.+|...++.++++|||.++++|++||.+.+
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 54444433 789999999998 688999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC---------CCCeEEEEEeCCCC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---------RKDVTALAWHPFHE 367 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h---------~~~V~sl~fsp~~~ 367 (713)
||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+.+.+++.+++.. .-...+++|+. ++
T Consensus 219 wdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 219 WDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred EEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CC
Confidence 9999999988776 788899999999977666665 445999999998887766421 22357889999 89
Q ss_pred CEEEEEECCCcEEEEEcC
Q 005123 368 EYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~ 385 (713)
..|++|-.|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=325.74 Aligned_cols=288 Identities=27% Similarity=0.482 Sum_probs=258.9
Q ss_pred EEeeCC-CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 137 HTSLNK-NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 137 ~~~l~~-H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+.+ |...|.|+.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|++|+++|++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344444 48999999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred Ec-CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 214 QN-NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 214 dl-~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
|+ ..+..++++++|...|++++|+++++++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 99 55588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCc--eEEEEccCCCC--eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe---EEEEEeCC
Q 005123 293 LVKLWDAKSGR--ELCSFHGHKNM--VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPF 365 (713)
Q Consensus 293 ~I~IwDl~t~~--~~~~~~~h~~~--I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V---~sl~fsp~ 365 (713)
.|+|||+.++. ++..+..+... ++++.|++++++|++++.|+.+++||++.++.+..+.+|...+ .+...+.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST- 389 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-
Confidence 99999999998 55666666555 9999999999999999999999999999999999999988753 3344455
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEeccc-CCCeEEEEEcCCCcEEEE----eCCcEEEEecC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCS----NDHTTKFWCRN 426 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~laS----~Dg~v~iWd~~ 426 (713)
++.++++++.|+.|++||+.+.. .+..+.+| ...|..++|++...++++ .|+.+++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~-~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGG-ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccc-hhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 78999999999999999998754 45555678 889999999999988876 58999999764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=280.54 Aligned_cols=273 Identities=18% Similarity=0.313 Sum_probs=244.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEE
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDL 234 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l 234 (713)
-+|++++.|-+|++|...++.+.+++...++.|+.+.+.+|++.|++++. -.|++||+++++ .+.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37899999999999999999999999988999999999999999998885 679999999875 588899999999999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCC
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKN 313 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~ 313 (713)
.|..+|+.++++++||+++|||++...+.+.+. +...|++|..+|+...|++|..+|.|+|||+.+..+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999976666665 77999999999999999999999999999999876666553 3456
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCC------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.|.++...+||++|+.+...|.+++|++-+. +.+..|+.|.+.|..+.+|| +.++||++|.|.+++||++++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 7999999999999999999999999998653 45677889999999999999 8999999999999999999877
Q ss_pred CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCcc
Q 005123 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~ 432 (713)
.+....+.+|...+++++||.|+.+|++ .|+.+++|++...++..
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 5566677889999999999999988865 99999999997766544
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=288.53 Aligned_cols=284 Identities=21% Similarity=0.425 Sum_probs=252.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC-CCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+.+|++.|+++.|+|+|.+||+|+.|..|.||++. ..+-...+++|.++|..+.|..|++.|++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 467999999999999999999999999999999944 4555677889999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
++.++.++.|..-|+.+.-+.-|. ++++++.|+++++||+++.+.++++. ....++++.|..++..+++|+-|+.|++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceee
Confidence 999999999999999999776664 46788899999999999988887775 5578999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeeEEEeecCC----CCeEEEEEeCCCCC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----MKELESFRGHR----KDVTALAWHPFHEE 368 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t----~~~l~~~~~h~----~~V~sl~fsp~~~~ 368 (713)
||++....+.++.+|...|+.+..+++|.++++-+.|.+|++||++- .+++..+.+|. .....++|+| +++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~ 279 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGT 279 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCC
Confidence 99999999999999999999999999999999999999999999984 34577777664 3567889999 899
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEec
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCR 425 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~ 425 (713)
.+.+|+.|..+++||.... ..+-.+.+|.+.|++++|+|..-++. +.|.+|.+=.+
T Consensus 280 ~i~ags~dr~vyvwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ccccccccceEEEeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999998544 45666778999999999999996664 58999887543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=306.17 Aligned_cols=275 Identities=24% Similarity=0.463 Sum_probs=246.6
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
..+.|.|+.+. ...+++|..|++|+|||..+..+.+.+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++.+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 56789999984 557999999999999999999999999999999999999 56799999999999999999999999
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
++..|.+.|..+.|+ +.++++++.|.+|.+||+..... .+.+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999995 56999999999999999976543 35577899999999998 679999999999999999
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
.+++.++++.+|...|.|+.+ .++++++|++|.+|++||+..|++++.+++|..-|.++.| +.+.|++|..||+|
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceE
Confidence 999999999999999999988 7899999999999999999999999999999999999999 56889999999999
Q ss_pred EEEEcCCCCce--------EEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 380 FHWLVGHETPQ--------VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 380 ~Iwd~~~~~~~--------~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+|||+...... +.....|.+.|..+.|..-..+.++.|.+|.|||+.....
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 99999765432 2334458899999999887666677999999999865443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=306.77 Aligned_cols=340 Identities=21% Similarity=0.342 Sum_probs=284.5
Q ss_pred chhceeEEEEEeccCCCceeeccCccccccCccceeeeCCC----CCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEE
Q 005123 87 TVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNP----STSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (713)
Q Consensus 87 ~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latg 162 (713)
++.+.+.+-+|..+.+.........+ .+........++. ...+..+....-++.....|+|.+|++..+.||+|
T Consensus 206 tvskdG~l~~W~~~~~P~~~~~~~kd--~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg 283 (893)
T KOG0291|consen 206 TVSKDGALFVWTCDLRPPELDKAEKD--EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG 283 (893)
T ss_pred EEecCceEEEEEecCCCccccccccc--ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence 45677788899877543222221111 1111111111111 11222333344566667899999999999999999
Q ss_pred ECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC
Q 005123 163 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (713)
Q Consensus 163 s~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~ 241 (713)
-.+|.+.||++....+++.+......|..++|+..|++|+.|+.. |.+.||++.+...+.+..+|...++++++++||.
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq 363 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ 363 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc
Confidence 999999999999999999999989999999999999999988765 8999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEEEEE
Q 005123 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKW 320 (713)
Q Consensus 242 ~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~f 320 (713)
++++|++||+|+|||..++-++.++..|.+.|+.+.|+..++.|++++.||+|+.||+...+..+++.. ......|++.
T Consensus 364 ~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998874 3345788899
Q ss_pred cCCCCEEEEEECCC-eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 321 NQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 321 spdg~~Latgs~Dg-~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
.+.|.++++|+.|. .|+||++.+|+.+..+.+|.++|.+++|++ .+..|+++|.|.+|++||+-.....++.+. +..
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~s 521 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRS 521 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-ecc
Confidence 88999999999887 699999999999999999999999999999 789999999999999999966655555553 467
Q ss_pred CeEEEEEcCCCcEEE--EeCCcEEEEecCCCCC
Q 005123 400 TVWDLAWHPIGYLLC--SNDHTTKFWCRNRPGD 430 (713)
Q Consensus 400 ~V~~l~~spdg~~la--S~Dg~v~iWd~~~~~~ 430 (713)
.|..++|+|+|.-+| +.||.|.|||.+....
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 899999999997775 4999999999876544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=296.70 Aligned_cols=344 Identities=18% Similarity=0.360 Sum_probs=278.3
Q ss_pred cchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCC---------CceeeeEEE------EeeCCCCCceEEE
Q 005123 86 STVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPS---------TSFAAKFVH------TSLNKNRCSINRV 150 (713)
Q Consensus 86 ~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~------~~l~~H~~~V~~v 150 (713)
.+-...+.+|+|+....+. +++.+.......+..+.|..+.. ..|...|+- -.+.+|...|+++
T Consensus 75 ASGD~sG~vRIWdtt~~~h-iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~ 153 (603)
T KOG0318|consen 75 ASGDVSGKVRIWDTTQKEH-ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSV 153 (603)
T ss_pred eecCCcCcEEEEeccCcce-eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeee
Confidence 3334556899999776432 22222222222333344443333 223333332 3588999999999
Q ss_pred EEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec---c
Q 005123 151 LWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS---A 226 (713)
Q Consensus 151 ~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~---~ 226 (713)
+|-+..- +++||+.|++|.+|+-.-.++..++..|..-|.|+.|+|||+++++++.||+|.|||-.+++.+..+. .
T Consensus 154 ~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 154 DFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred eccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence 9999764 68999999999999999999999999999999999999999999999999999999999999988887 8
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-----------------------------------------
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS----------------------------------------- 265 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~----------------------------------------- 265 (713)
|++.|.+|+|+||++.|++++.|.+++|||+.+.+++++
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence 999999999999999999999999999999976654433
Q ss_pred --EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE-----------Ecc----------------------
Q 005123 266 --LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-----------FHG---------------------- 310 (713)
Q Consensus 266 --l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~-----------~~~---------------------- 310 (713)
+.+|...|+++..++++++|++|+.||.|.-||..++..-+. +..
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 246888999999999999999999999999999875432110 000
Q ss_pred -----C-------------------------------------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 311 -----H-------------------------------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 311 -----h-------------------------------------------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
+ .-...+++++++++.+++|+.|+.|+||.+.
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~ 473 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS 473 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec
Confidence 0 0124578899999999999999999999998
Q ss_pred CCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC
Q 005123 343 AMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH 418 (713)
Q Consensus 343 t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg 418 (713)
..+. ......|...|+++++|| ++.+||++...+.|.+||+.+.........-|...|.+++|+|+..++|+ .|.
T Consensus 474 g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 474 GDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred CCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence 6553 334567999999999999 89999999999999999998887766666679999999999999999986 999
Q ss_pred cEEEEecCCCCCc
Q 005123 419 TTKFWCRNRPGDT 431 (713)
Q Consensus 419 ~v~iWd~~~~~~~ 431 (713)
+|.||+++++.+.
T Consensus 553 ~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 553 NVIIYSVKKPAKH 565 (603)
T ss_pred eEEEEEccChhhh
Confidence 9999999988776
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=271.15 Aligned_cols=264 Identities=19% Similarity=0.340 Sum_probs=229.8
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+....+-|+.+.+++|++.||+++.- .|++||+.+.+ .+.++.+|++.|++|.|..||+.+++|++||+++|||++.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 34456679999999999999998865 79999998875 4889999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+.+.+ .+...|+++..+++...|++|..+|.|+|||+.+..+...+. .....|.++...+||++|+.+...|++++
T Consensus 115 ~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 115 LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEE
Confidence 6665555 567999999999999999999999999999998876655543 34568999999999999999999999999
Q ss_pred EECCCC------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 297 WDAKSG------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 297 wDl~t~------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|++-+. +.+.++..|.+.|..+.+|||+++||+++.|.+++||++++. +.-..+.+|...+..++||. ++.+
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Y 272 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEY 272 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccE
Confidence 998754 345677889999999999999999999999999999999987 55677889999999999999 8999
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
|++++.|+.+++||+..+++ +....+|.....|++.+
T Consensus 273 lvTassd~~~rlW~~~~~k~-v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKE-VRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEecCCCCceeecccccCce-eeecCCcccccEEEEee
Confidence 99999999999999987764 44555676666666653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=272.24 Aligned_cols=282 Identities=23% Similarity=0.362 Sum_probs=250.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..|..|.+.|+++.|+-||++.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC--CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++..+.+.+|...|+.+.|+.+...+++++-|.+|++||.++ .+.+..+....+.|.+|.++ +..|++|+.||+++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 999999999999999999999999999999999999999975 45678888888999999998 67899999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE--EEEEeCCCCCEEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT--ALAWHPFHEEYFVSG 373 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~--sl~fsp~~~~~lasg 373 (713)
.||++.|+....+- ..+|+|++|++|++.+++++.|++|++.|-.+++.+..+++|...-. .++++. ....+++|
T Consensus 169 tydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sg 245 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSG 245 (307)
T ss_pred EEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEec
Confidence 99999988765554 56799999999999999999999999999999999999999986543 445665 67899999
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCC-eEEEEEcCCC-cEEEEeCCcEEEEec
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNT-VWDLAWHPIG-YLLCSNDHTTKFWCR 425 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg-~~laS~Dg~v~iWd~ 425 (713)
++||.|++||+........ +..+... |.+|+++|.. .++...++.+.+|.-
T Consensus 246 SEDG~Vy~wdLvd~~~~sk-~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISK-LSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred cCCceEEEEEeccceeeee-eccCCceeEEeeecccCccceeEecCCceeceee
Confidence 9999999999977664444 4445555 8999999987 455557788888854
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=282.98 Aligned_cols=286 Identities=19% Similarity=0.301 Sum_probs=251.4
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..++.+|+.+|.+++.+|+.++++||+.|..-.||++.++.....+.+|+..|+++.|+.||.+||+|+.+|.|+||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
++.....+...-+.|.-+.|++.+..|++|+.||.|.+|.+.+....+.+.+|...+++=.|.|+|++++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99988888766778889999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCceEEEEccC---------------------------------------------------CC---CeEEEEEcC
Q 005123 297 WDAKSGRELCSFHGH---------------------------------------------------KN---MVLCVKWNQ 322 (713)
Q Consensus 297 wDl~t~~~~~~~~~h---------------------------------------------------~~---~I~si~fsp 322 (713)
||.+++..+.++... .. .|.++.|+.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 999998877665410 00 122233333
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 323 dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
.=.+.|+|+.||+|.|||+...+..+.+. |...|+.+.|-+ ..+|++++.||.|++||.+++..+ ....+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~-~~y~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLK-FTYTGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceE-EEEecCchhee
Confidence 44567889999999999999777655554 888899999976 678999999999999999998754 45568999999
Q ss_pred EEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 403 DLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 403 ~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
+++++++.+++++ .|++.+||+..
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999977754 99999999863
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=272.50 Aligned_cols=240 Identities=19% Similarity=0.342 Sum_probs=225.7
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
--...|..++|+|.|+++|+|+-|+...||++.+. +..+++.+|++.+.|+.|.. +..|++++.|.++.+||+
T Consensus 95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDI 173 (343)
T ss_pred cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEc
Confidence 34568999999999999999999999999998865 45677899999999999986 678999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+++..+..+.+|...|.+|++++ +++.+++|+.|++.++||++.+..+..|.+|+..|++|+|.|+|.-|++|++|+++
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 295 KLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
++||+|..+.+..+.. ....|++++||..|++|++|..|.++.+||.-.++.+..+.+|+..|++|..++ ++.-+++
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~T 332 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVAT 332 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEe
Confidence 9999999988887753 345799999999999999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
||.|.+|+||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=325.35 Aligned_cols=283 Identities=17% Similarity=0.318 Sum_probs=240.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----c----eEEEEeccCCCEEEEEEccC-CCEEEEEeCCCc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----N----FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGA 209 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~----~~~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~ 209 (713)
.+..|.+.|++++|++++++||+|+.|+.|+|||..+. . ....+. +...|.+++|++. +++|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 35569999999999999999999999999999997542 1 122222 4568999999874 689999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEc-CCCCEEEE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH-PTKSLLVS 287 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s-pdg~~L~s 287 (713)
|+|||+.+++.+..+..|...|++++|++ ++.+|++++.|++|++||++++..+..+..+ ..|.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999999889999999999999996 7899999999999999999998888887744 679999995 47899999
Q ss_pred EeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeeEEEeecCCCCeEEE
Q 005123 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTAL 360 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t------~~~l~~~~~h~~~V~sl 360 (713)
|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|+|||++. .+.+..+.+|...+.++
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 9999999999998866 466778899999999997 788999999999999999974 35678899999999999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE------------ecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI------------HNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~------------~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
+|++ ++.+|++|+.|+.|+||+.......... ...+...|.+++|++++..+++ .||.|+||++
T Consensus 715 ~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999 6889999999999999998654322111 1234567999999999966654 8999999986
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=288.82 Aligned_cols=289 Identities=17% Similarity=0.350 Sum_probs=247.1
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+..|++.|+-+.||++|++||+++.|.+..||++.. .++.+++.+|...|..|.||||+++|++|+.|..+++|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 456889999999999999999999999999999998543 45688899999999999999999999999999999999
Q ss_pred EcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCC
Q 005123 214 QNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 214 dl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D 291 (713)
|+.+++....+.. +...+.+++|.+|+..+++|+.|++|..||+.... +....+ ..-.|.+++.+.||+++++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9999988776643 46789999999999999999999999999986543 333322 23569999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC--eEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~--V~sl~fsp~~~~~ 369 (713)
..|++|+..+...+..+. ....|+++++|.|++++++.-.+..|.+||+...+.+..+.+|+.. |..-+|--.+..+
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 999999988766554444 5678999999999999999999999999999988889999998753 5555676656689
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE--EeCCcEEEEecCCC
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC--SNDHTTKFWCRNRP 428 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la--S~Dg~v~iWd~~~~ 428 (713)
+++||+|+.|+||+..+++ .+..+.+|...|++++|+|.. ..+| ++||+||||.....
T Consensus 455 iaSGSED~kvyIWhr~sgk-ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGK-LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCc-eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999987766 566777999999999999987 4444 49999999987544
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=288.98 Aligned_cols=286 Identities=20% Similarity=0.422 Sum_probs=251.9
Q ss_pred CCCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCC--ceEE--EE------e----ccCCCEEEEEEccCCCEEEEEe
Q 005123 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF--NFEM--IL------Q----AHDHAIRSMVWSHNDNWMVSGD 205 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~--~~~~--~l------~----~h~~~V~sl~~spdg~~L~sgs 205 (713)
..|+..|.+++|+|-.. .|++++.|-..++|++... .... .+ . ..+..|++++|+.+|++||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999876 8999999999999997641 1111 11 1 1246799999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
.||.++||+.. +..+.++..|++.|.+|.|+.+|++|++++.|+++.+||..+++....+..|...-.+|.|-. ...|
T Consensus 255 ~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F 332 (524)
T KOG0273|consen 255 EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEF 332 (524)
T ss_pred cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceE
Confidence 99999999864 566777889999999999999999999999999999999999999999988888778899975 4568
Q ss_pred EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
++++.|+.|+|+.+...+.+.++.+|.+.|.++.|++.+.+|++++.|++++||..........+..|...|..+.|+|+
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C--------CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 366 H--------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 366 ~--------~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+ +..|++++.|++|++||+..+... ..+..|...|.+|+|++++.++|+ .|+.|.||+.....
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 3 457999999999999999877754 445679999999999999999987 89999999885443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=286.94 Aligned_cols=247 Identities=26% Similarity=0.497 Sum_probs=235.7
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...|++|.+.|.+|+|+..|++||+++.|-.+++||..+ .++++.+.+|+..|.+++|-|.|++|+++++|.+|+.|++
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC 222 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence 347899999999999999999999999998899999887 6778889999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC--------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-------------- 281 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-------------- 281 (713)
.++.++.++.+|.+.|..+..+.||.++++|+.|.+|++|-+.++++...++.|+-.|.|++|.|.
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 282 -KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 282 -g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
+.++++++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++.+|++++|||+++.++.+++..|..-|+++
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 2489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEc
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.|+. +..++++|+-|-++++|..
T Consensus 383 Dfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 383 DFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCC-CCceEEeccccceeeeeec
Confidence 9998 6779999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=301.05 Aligned_cols=342 Identities=23% Similarity=0.387 Sum_probs=275.5
Q ss_pred eeccchhceeEEEEEeccCCCceeeccCcc-cccc-Cccc-----eeeeCCCCCce----eeeEEEEeeCCCCCceEEEE
Q 005123 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPA-AAID-MLPT-----VAYTDNPSTSF----AAKFVHTSLNKNRCSINRVL 151 (713)
Q Consensus 83 ~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~-~~~~-~~~~-----v~~~~~~~~~~----~~~~~~~~l~~H~~~V~~v~ 151 (713)
.|+-+.......+.|+..+.+....+.... ..++ .+.. +..-......+ ..-.+.+.+.|..+.|..++
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 355566667788899877655333332221 0011 1111 00111111111 12234456788899999999
Q ss_pred Ec-cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc----eeeeecc
Q 005123 152 WT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKSA 226 (713)
Q Consensus 152 ~s-pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~----~~~~~~~ 226 (713)
|- ++.++||+++..+.+++|++.+..+. .+.+|+..|.++....+|.+|++|+.|.++++|.++.+. ++....+
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 75 57799999999999999998887666 889999999999966678899999999999999885442 3445578
Q ss_pred CCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeE-----E----EEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 227 HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE-----R----SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 227 ~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~-----~----~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
|...|.+++++..+ .+|+++|.|++|++|++...+.. . ....|...|+||+++|+.++|++|+.|.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 99999999997655 67999999999999999762221 1 22469999999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
|++...+...++.+|+..|.|+.|++....+++++.|++|+||.+.+..++++|.+|+..|..+.|-. ++..|++++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCC
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNR 427 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~ 427 (713)
|.|+||+++++. +...+..|++.||+++.+++...++ +.|+.|.+|.-..
T Consensus 569 GliKlWnikt~e-C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNE-CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchh-hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999997766 4566778999999999999987555 5999999996433
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=308.26 Aligned_cols=212 Identities=20% Similarity=0.419 Sum_probs=204.8
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
.....+++.+|.++|..+.|+|+.++|+++++|++|++|.+.+..++..+++|...|.++.|+|.|-++|+++.|++.++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
|..+.....+.+.+|.+.|.|+.|+|+..|+++||.|.+||+||+.++..++.|.+|.+.|.+|+|+|+|++|++|+.|+
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
.|.|||+.+++.+..+.+|.+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999999999998753
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=295.01 Aligned_cols=290 Identities=22% Similarity=0.390 Sum_probs=253.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECC-CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~d-g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.-...+|..++|+..|++||.|+.. |.+.||+..+...+...++|...++++++++||.+|++|++||.|+|||..
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 3444556789999999999999998865 899999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceEEEEEcCCCCEEEEEeCCCc-E
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHPTKSLLVSGGKDSL-V 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~Dg~-I 294 (713)
++-+..++..|...|+.+.|+..++.+++++.||+|+.||+.+.+..+++.... ....||+.++.|.++++|+.|.. |
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 999999999999999999999999999999999999999999999988887543 45779999999999999988864 9
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
++|++.+|+.+-.+.+|.++|.+++|++++..|++++.|++|++||+-... .+.++. +...+++++|+| +++.|+++
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVa 538 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVA 538 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEE
Confidence 999999999999999999999999999999999999999999999997553 344444 778899999999 89999999
Q ss_pred ECCCcEEEEEcCCCCceEEE-------------------ecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 374 SLDGSIFHWLVGHETPQVEI-------------------HNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~-------------------~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+.||.|.+||++.....-.+ ........+.|+++.||..+.+ ..+.|+||++...-
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99999999998654322111 1112357899999999966643 88999999985443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=295.13 Aligned_cols=290 Identities=22% Similarity=0.390 Sum_probs=259.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+++..+...|.||.|+|...+++++-.+|.|.|||.++...++.+...+-.|++..|-...+++++|++|..|+||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~ 295 (713)
.+.+..+..|.+.|++|+.+|..-+++++|+|-+|++||.+.. .+..++.+|...|.+|+|+| |.+.+++++.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999764 67889999999999999999 678999999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
||.+.+..+..++++|...|+|++|-+ |.-+|++|++|.+|+|||..+..++.++.+|...|..+.|+| .-.+|++|
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisg 245 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISG 245 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEe
Confidence 999999999999999999999999987 446999999999999999999999999999999999999999 78899999
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEEecCCCC
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iWd~~~~~ 429 (713)
++||+|+||+..+-+.. ..+.-.-+.||||+-......+ .+.|....+..+.+..
T Consensus 246 sEDGTvriWhs~Ty~lE-~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgree 301 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLE-KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREE 301 (794)
T ss_pred cCCccEEEecCcceehh-hhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCC
Confidence 99999999998665433 3333346789999987765444 4455555555554433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=280.75 Aligned_cols=252 Identities=27% Similarity=0.486 Sum_probs=236.2
Q ss_pred CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEE
Q 005123 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 176 ~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iw 255 (713)
.++.+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.++.+..++.+|...|..++++....|++++++|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 005123 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~ 335 (713)
|++..+.++.+.+|.+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.++.+.+-.-.+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
|++||++.++...++..|...|.+++.+| ....||+++.| .|+-|++..+..+.. +.+|+..|++++.+.|+.++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSG 377 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCceEEEc
Confidence 99999999999999999999999999999 78899999988 899999987765555 7789999999999999998877
Q ss_pred -eCCcEEEEecCCCCC
Q 005123 416 -NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~ 430 (713)
+.|.+.+||....-.
T Consensus 378 ~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHN 393 (460)
T ss_pred CCceEEEEEecCcCcc
Confidence 778999999866544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=297.77 Aligned_cols=290 Identities=18% Similarity=0.372 Sum_probs=254.3
Q ss_pred eeeEEEEeeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 132 AAKFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 132 ~~~~~~~~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
..+.....+.+|+..|+++.|.+ .+.+|++++.|+.|+||++.. +++++++.+|...|.+++|+.+|..+++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 34555678999999999999999 789999999999999999776 8899999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
|++||+++|.++..+. ....++|+.|.+++ +.|++|+.|+.|+.||+++++.+..+..|.+.|..|.|-+++++++++
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999988874 45678999999999 889999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eeEEEeecCC--CCeEEEEE
Q 005123 289 GKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM---KELESFRGHR--KDVTALAW 362 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~---~~l~~~~~h~--~~V~sl~f 362 (713)
++|++|+||+.+....+..+. .+.....||..+|+++++++-+.|+.|.||.+... ...+.|++|. +.-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999998876655432 23445778999999999999999999999997642 2345677775 45678999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeCCcEEEEe
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSNDHTTKFWC 424 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~Dg~v~iWd 424 (713)
|| ++++|++|+.||.+.+||.++.+ ++..+.+|+..+..+.|+|.. .+.|+.||.|++|+
T Consensus 441 Sp-DG~~l~SGdsdG~v~~wdwkt~k-l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SP-DGRTLCSGDSDGKVNFWDWKTTK-LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cC-CCCeEEeecCCccEEEeechhhh-hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99 89999999999999999997655 566677899999999999865 33355999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=291.29 Aligned_cols=247 Identities=27% Similarity=0.473 Sum_probs=227.3
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
+.+..|.+.|+++.|+.++.++++|+.+|.|++|+..-.. ++.+..| ...|++++|++++..++++++||+|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 3467899999999999999999999999999999976443 4445544 5999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+....+.+|.-.|.+++|+|...+|++++.|..|++||.+++.++.++..|...|..+.|++++++|+++++|..+++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEe-ecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
||+++.+.+.++++|+..|+++.|+| ...+|.+|+.||.|..|.+...+.+..+ .+|+..|++++|+| -+.+|++|+
T Consensus 291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgs 369 (464)
T KOG0284|consen 291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGS 369 (464)
T ss_pred EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecC
Confidence 99999999999999999999999999 6778889999999999999866666555 47999999999999 799999999
Q ss_pred CCCcEEEEEcCC
Q 005123 375 LDGSIFHWLVGH 386 (713)
Q Consensus 375 ~DG~I~Iwd~~~ 386 (713)
.|.++++|.-..
T Consensus 370 nd~t~rfw~r~r 381 (464)
T KOG0284|consen 370 NDRTVRFWTRNR 381 (464)
T ss_pred CCcceeeeccCC
Confidence 999999997643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=281.93 Aligned_cols=238 Identities=25% Similarity=0.462 Sum_probs=216.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..|.||.++|.|+.|. .+.|++|++|.+|+|||.++++.+.++..|..+|..+.|+ +.++++++.|.+|.|||+..
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 3578999999999995 5699999999999999999999999999999999999996 57999999999999999886
Q ss_pred Cc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 ~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.. +...+.+|...|+.+.| +.++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+.|.+|
T Consensus 307 ps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntI 382 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 382 (499)
T ss_pred chHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceE
Confidence 54 44556789999999999 56799999999999999999999999999999999999987 8999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------eEEEeecCCCCeEEEEEeCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---------~l~~~~~h~~~V~sl~fsp~ 365 (713)
++||+..|++++.+++|..-|.||.| |.+.|++|+.||+|+|||+.++. ++..+..|.+.|..+.|
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--- 457 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--- 457 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---
Confidence 99999999999999999999999999 67889999999999999998653 34556678999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+...|++++.|.+|.|||+.++.
T Consensus 458 D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 458 DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cceEEEeccCCCeEEEEEcCCCC
Confidence 56789999999999999996654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=291.39 Aligned_cols=290 Identities=22% Similarity=0.356 Sum_probs=259.4
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.-.-++.+|+..|+++++|.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|...|.+.|||
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEE
Confidence 33457889999999999999987777766 458999999999999998764 899999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-----CeeE--------EEEccCCCceEEEEEcCC
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEE--------RSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-----~~~~--------~~l~~h~~~V~sl~~spd 281 (713)
+.+...+.++.+|.+.|++++.++|+..+++++.|.+|++||+.- +... +++ ...+.|.|++++||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCC
Confidence 999999999999999999999999999999999999999999731 1111 112 24578999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~ 361 (713)
+++|+++--|++|+||-+++-+....+.+|.-+|.|+.+|+|++.++||+.|+.|+||-++-|.+-+.|-+|++.|.++.
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
|.| ...++++++.|+.|+-||-.+-. .+..+.+|...|+|++.+++|.+++| .|.+||+|.....-.
T Consensus 600 F~P-~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKDGKVKQWDGEKFE-EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred Ecc-cceeEEEecCcceEEeechhhhh-hheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 999 88999999999999999975544 56667789999999999999977765 899999998766433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=270.71 Aligned_cols=280 Identities=24% Similarity=0.416 Sum_probs=244.3
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN---WMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~---~L~sgs~DG~I~vwdl~~~ 218 (713)
-|.+.|.+|... +++|++|++||.++|||.+ ++..+.+.+|.+.|.+++|.-.+. .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488899999888 7899999999999999975 678899999999999999865443 5999999999999998876
Q ss_pred cee----eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------------------------CeeEEEEccC
Q 005123 219 NVK----ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------------------------CQEERSLTGH 269 (713)
Q Consensus 219 ~~~----~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------------------------~~~~~~l~~h 269 (713)
+.. ....+|+..|.+++...++..+++++.|.+|+||+..+ ...+..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 22348999999999999999999999999999999321 1234567789
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---e
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---E 346 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---~ 346 (713)
...|.+|.|+. ...+++++.|.+|+.||+.++..+.++.. ...++|+++++..++|++|+.|..|++||-|++. .
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999997 67899999999999999999999888774 5669999999999999999999999999998753 3
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
...|.+|...|.++.|+|.+...|++++.|+++++||+++....+..+.+|.+.|.++.|+..+.++. +.|++|+|+.-
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 57889999999999999988999999999999999999998877777778999999999999876664 49999999965
Q ss_pred C
Q 005123 426 N 426 (713)
Q Consensus 426 ~ 426 (713)
.
T Consensus 418 ~ 418 (423)
T KOG0313|consen 418 S 418 (423)
T ss_pred c
Confidence 3
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=276.13 Aligned_cols=286 Identities=22% Similarity=0.350 Sum_probs=254.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--------eccCCCEEEEEEccCCCEEEEEeCC
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--------QAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--------~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
.+..-.+.++-+.|..|||||++|++|+.||.|.|||..++++.+.+ .-++.+|.|++|+.|...|++|+.|
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 33344467778999999999999999999999999999998876543 3478899999999999999999999
Q ss_pred CcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 208 GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
|.|+||.++++.+++.+. .|...|+|+.|+.|+..+++++.|.+|+|.-+.++++++.+++|.+.|+...|+.||..++
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 999999999999988886 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecC---CCCeEEE
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH---RKDVTAL 360 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h---~~~V~sl 360 (713)
+++.||+|++|+.++.+++.+++. .+..|+++..-| +-..+++|...++|+|.++. +..+++|..- .+...++
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 999999999999999999988864 455688887776 56789999999999999987 7888887532 3557777
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
+.+| .+.++.+.++|+.++.|.+.+++ +...+..|+..|..++-+|...++|+ .||.+++|.
T Consensus 444 ~lSp-kGewiYcigED~vlYCF~~~sG~-LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSP-KGEWIYCIGEDGVLYCFSVLSGK-LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecC-CCcEEEEEccCcEEEEEEeecCc-eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 8899 89999999999999999997776 44556679999999999999999987 999999994
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=295.04 Aligned_cols=290 Identities=25% Similarity=0.425 Sum_probs=261.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+...+..|..++|+|..-+++++-.+|.|.+||..-+.++..+..|++.|+.|+|+++..++++|++|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+++.++.+|-+.|+.+.|+..--+|+++|+|-+|+||+..+.+++..+++|...|.|..|+|....++++|-|.+|+|||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc---------------------------e--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--eE
Q 005123 299 AKSGR---------------------------E--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--EL 347 (713)
Q Consensus 299 l~t~~---------------------------~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--~l 347 (713)
+..-+ . ...+++|+..|+.++|+|.-.+|++|++|+.|++|.....+ .+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 85211 1 23457899999999999999999999999999999987544 46
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
.+.++|...|+++.|+| ..++|++.|+|++|+|||+.+.+.+..+.. ..+..|.|+.+|...++|. .|+-+.||.++
T Consensus 244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 77889999999999999 899999999999999999977765555543 4578999999999988865 89999999887
Q ss_pred CCCC
Q 005123 427 RPGD 430 (713)
Q Consensus 427 ~~~~ 430 (713)
+...
T Consensus 322 RErp 325 (1202)
T KOG0292|consen 322 RERP 325 (1202)
T ss_pred ccCc
Confidence 6544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-30 Score=264.44 Aligned_cols=244 Identities=28% Similarity=0.497 Sum_probs=226.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+..|...|.++.|++++++|++++.||.|++||+.+.+.+..+..|...|.+++|+++++++++++.|+.|++||+++.
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence 45678889999999999999999999999999999998888889999999999999999888888888999999999988
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+....+..|...|.+++|++++.++++++.|+.|++||+++.+.+..+..|...|.+++|+++++.|++++.|+.|++||
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 88888888889999999999998888888899999999998888888888888999999999999999999999999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
+++++.+..+..+...+.+++|++++.++++++.|+.|++||+++++.+..+..|...|.+++|++ ++.+|++++.||.
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 284 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCe
Confidence 999988888878888999999999988888888899999999999999999999999999999999 6889999999999
Q ss_pred EEEEE
Q 005123 379 IFHWL 383 (713)
Q Consensus 379 I~Iwd 383 (713)
|++|+
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 99996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=260.28 Aligned_cols=285 Identities=21% Similarity=0.379 Sum_probs=258.1
Q ss_pred eeCCCCCceEEEEEcc---CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTP---TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp---dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.-.+|..+|..++||+ +|-+|++++.|+.-.+-+.+++..+-++.+|.++|.+.++..+...-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4568999999999986 8889999999999999999999999999999999999999988888889999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
-++..+..+ .|+.-|.+++|+.|.++|++++.+..+||||+++.+ ....+.+|.+.|..+.|....+.|+++++|++|
T Consensus 89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 999888876 688899999999999999999999999999997754 467788999999999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++||.++++.+.++. .+..|+++.++.||++|.++ ..+.|++||.++...++.++ -...|.+..++| +..++++|+
T Consensus 168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGg 243 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGG 243 (334)
T ss_pred EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccC-CCceEEecC
Confidence 999999999999987 67889999999999976665 45679999999999988887 456789999999 679999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
+|..++.||..++..+.....+|-++|.|+.|+|||.+.++ .||+||||.....
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 99999999999998777767889999999999999988876 9999999987543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-31 Score=292.97 Aligned_cols=249 Identities=27% Similarity=0.493 Sum_probs=228.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeC-CCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~-~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+...+.+|...|++++|++|+++|++++.|++|+|||+ ..+..++++.+|...|++++|++++++|++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 34456899999999999999999999999999999999 55688999999999999999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCc--eEEEEEcCCCCEEEEEeC
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWD--VKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~--V~sl~~spdg~~L~sgs~ 290 (713)
+++++++..+..|...|++++|++++++|++++.|+.|+|||+.++. +...+..+... ++++.|++++++|++++.
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999988 45666666655 999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCe---EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-CCCeEEEEEeCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMV---LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHPFH 366 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I---~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-~~~V~sl~fsp~~ 366 (713)
|+.|++||+++++.+..+..|...+ .+...+.++.++++|+.|+.|++||+.++..+..+.+| ...|..++|++ .
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~ 433 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-T 433 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-C
Confidence 9999999999999999998887753 34455778999999999999999999999999999999 88999999999 8
Q ss_pred CCEEEEEE--CCCcEEEEEcC
Q 005123 367 EEYFVSGS--LDGSIFHWLVG 385 (713)
Q Consensus 367 ~~~lasgs--~DG~I~Iwd~~ 385 (713)
..++++++ .|+.|++|..+
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCeeeecCcCCCceEEEecCC
Confidence 89999988 68899999753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=253.04 Aligned_cols=289 Identities=19% Similarity=0.292 Sum_probs=253.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~ 216 (713)
.+....+.|+++.|+.+|.+|++++.|..|+|||..+++.++++..++..|..++|....+.++.++. |.+|++.++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 34456789999999999999999999999999999999999999999999999999888888877766 8899999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+++.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+... .-..++|+|+|-++|++.....|+|
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEE
Confidence 99999999999999999999999999999999999999999977776665433 3346789999999999998889999
Q ss_pred EECCCC--ceEEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe---EEEEEeCCCCC
Q 005123 297 WDAKSG--RELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPFHEE 368 (713)
Q Consensus 297 wDl~t~--~~~~~~~---~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V---~sl~fsp~~~~ 368 (713)
||+|+- ....++. ......+.|.||+||++|+.++..+.+++.|.-+|..+.++..+...- ...+|+| ++.
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~ 245 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSK 245 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCc
Confidence 999974 2333333 346778999999999999999999999999999999999988776432 6788999 899
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+|++|+.||+|.+|+++++..+......+.+.+.++.|+|....+++.+..+.+|-.+..+.
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccccc
Confidence 99999999999999999888777766658899999999999999999999999998765443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=252.37 Aligned_cols=287 Identities=17% Similarity=0.290 Sum_probs=245.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.|.+|..+|+-|.|+.+|++|++|+.|.++.||-..+++.+-++.+|.++|.|++.+.+.++|++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcC-------CCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~-------~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
+.+..++ ....|..+.|+.++++++.+.++ +.|.++|++ ..+....+..+.+.++.+.|.+.+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998874 57789999999999998887653 679999997 3455777778889999999999999999
Q ss_pred EEeCCCcEEEEECCCCceE-EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 287 SGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
+|.+||.|.+||+++++.+ ...+.|...|+.+.+++|..++++++.|.+-++||.++.+.++++. ...+|++.+++|.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPL 242 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccc
Confidence 9999999999999998554 4557789999999999999999999999999999999999999988 6788999999995
Q ss_pred CCCEEEEEECCCc-EEEEEcCCC-----------CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 366 HEEYFVSGSLDGS-IFHWLVGHE-----------TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 366 ~~~~lasgs~DG~-I~Iwd~~~~-----------~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.+.+++.|+.+-. |.--+.+.+ .+.+....+|-++|++|+|+|+|...+| .||.|||.-++.
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 4444544444321 221111222 1223445679999999999999988887 999999986643
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=252.87 Aligned_cols=278 Identities=23% Similarity=0.411 Sum_probs=235.6
Q ss_pred EEEEEccC-CCEEEEEE-------CCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 005123 148 NRVLWTPT-GRRLITGS-------QSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 148 ~~v~~spd-g~~Latgs-------~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~ 216 (713)
.++.|||- .++||++. ..|++.|.++...+-+..+. .-++.+..++|+++. +.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778883 34454442 36889999986544444433 246789999999875 677889999999999965
Q ss_pred CC-ceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCc
Q 005123 217 MN-NVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSL 293 (713)
Q Consensus 217 ~~-~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~ 293 (713)
.. +.+..++.|+..|.++.|+.. +..+++++.|++|++||......+.++++|...|....|+| ..+++++++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 43 567788999999999999874 45578889999999999999999999999999999999999 6789999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
++|||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++||+++.+ .+.++.+|.-.|..++|||....+|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999997544445888999999999998 77889999999999999999765 57888999999999999998889999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEEE--eCCcEEEEec
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCS--NDHTTKFWCR 425 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~laS--~Dg~v~iWd~ 425 (713)
+++.|-+++|||.......++....|+..|..+.|+.-. ..+|+ .|+.++||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999988888888888899999999999744 56665 9999999973
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=286.98 Aligned_cols=248 Identities=24% Similarity=0.374 Sum_probs=225.7
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~v 212 (713)
..+.+|++.|.+++...+|.+|++|+.|.++++|.+++ ..++....+|+..|.+|+++..+ .+|++++.|++|++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 36789999999999777889999999999999997633 33455678999999999998765 68889999999999
Q ss_pred EEcCCCc-----eee----eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 213 WQNNMNN-----VKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 213 wdl~~~~-----~~~----~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
|++...+ ... ....|...|++++++++.++||+||.|++.+||+++......++.+|...|.||.|++..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 9987622 111 2357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.++++|.|++|+||.+.+..++++|.+|...|..+.|-.+++.|++++.||.|+||++++.+++.++..|.+.|++++.+
T Consensus 519 ~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+ ....++||+.||.|.+|.-.+
T Consensus 599 ~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 599 P-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred C-ccceeEecCCCeEEEEeecCc
Confidence 9 677999999999999996544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=257.66 Aligned_cols=293 Identities=21% Similarity=0.386 Sum_probs=248.8
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC------------------CceEEEEeccCCCEEEEEE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMVW 194 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t------------------~~~~~~l~~h~~~V~sl~~ 194 (713)
.+.....+..|+..+++.+|++||.++|||+.|..|+|.|++. .-.++++..|.+.|+++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3445567889999999999999999999999999999999761 1356778899999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE---ccC
Q 005123 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGH 269 (713)
Q Consensus 195 spdg~~L~sgs~DG~I~vwdl~~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l---~~h 269 (713)
+|....|++++.|++|++||+......+.+ ......|.+|+|+|.|.+|++|.+..++++||+++.++...- ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999998765433332 234568999999999999999999999999999998876554 358
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h-~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
.+.|++|.+++.+++.+++++||.|+|||--+++++.++. .| ...|.+..|..+++||++.+.|..|++|.+.+++.+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8999999999999999999999999999999999998885 34 356999999999999999999999999999999999
Q ss_pred EEeecCCC-----CeEEEEEeCCCCCEEEEEEC-CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEEEEeCCc
Q 005123 348 ESFRGHRK-----DVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLCSNDHT 419 (713)
Q Consensus 348 ~~~~~h~~-----~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~laS~Dg~ 419 (713)
.++.+-.. --+...|+. .+++++.-.+ .+.++-||.++..+...+..+|++.+..+.-+|.+ ++.|+.|..
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 98876421 134456776 5666555443 56899999999988888888999999999999988 566889999
Q ss_pred EEEEecC
Q 005123 420 TKFWCRN 426 (713)
Q Consensus 420 v~iWd~~ 426 (713)
+|+|...
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999753
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=248.02 Aligned_cols=272 Identities=17% Similarity=0.337 Sum_probs=244.3
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE--EEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM--ILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~--~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwd 214 (713)
+.+.+|...|.+|+|+.+|.+|++|+.|+++.||+++..+... ...+|.+.|..++|++. .+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678899999999999999999999999999999988775544 34689999999999885 47889999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++.++....+....+.| .+.|+|++.++++++.|..|.+.|.++.+...... ....+..++|+-++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999988876655554 57899999999999999999999998877665554 55678899999888888888878999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.|...-+-+.+..+++|.....||.|+|+|+|||+|+.|..+.+||+...-+++.|..++-+|..|.||. ++++||++|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
+|..|-|=++.++..+.++. ++++...++|+|...+||
T Consensus 251 EDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred ccceEEeEecccCCeEEEee--ccCCceeEEecCCCceee
Confidence 99999999999998877765 588999999999998886
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=285.91 Aligned_cols=281 Identities=26% Similarity=0.390 Sum_probs=251.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+...|.|..|. .+++++++.|.+|++||..++..+.. +.+|.+.|.++++..-+++|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367788999998 66899999999999999999998888 999999999999987789999999999999999999999
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
...+.+|.+.|.++.. ...++++|+.|.+|++||+.++..+..+.+|...|+++.++ +.++++|+.|++|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 9999999999999987 45678889999999999999999999999999999999998 8899999999999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
++++++++.+|...|.++.+... +++++|+.|++|++||+++. +++.++.+|..-|..+.+ .+++|++++.|++|
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTI 435 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccE
Confidence 99999999999999999988654 89999999999999999999 999999999999988876 56899999999999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCcc
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~~ 432 (713)
++||..++.....+...|...|+++++.....+.++.|+++++||+.......
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 99999877755554433678999999984434445599999999986655443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=246.15 Aligned_cols=239 Identities=23% Similarity=0.446 Sum_probs=208.8
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+|+..|++++|+|.|++||+++.|.++.||.-.. ++++.++.+|+..|.|++|+.+|++||++++|+.|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 37999999999999999999999999999998654 5678899999999999999999999999999999999998754
Q ss_pred ---ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 219 ---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 219 ---~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
++...+..|...|..+.|+|...+|++++.|++|++|+-. +.++..++.+|...|.+++|++.|..|++++.|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 4677789999999999999999999999999999999876 3467889999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------eeE-EEeecCCCCeEEEEEeCC
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KEL-ESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------~~l-~~~~~h~~~V~sl~fsp~ 365 (713)
+|+||-..+.- -..|...+..+.|. ...|++++.|+.|+||..... +.+ ..-..|...|++++|+|.
T Consensus 218 tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 218 TVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred ceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 99999866321 12367889999997 457999999999999976642 111 233568889999999996
Q ss_pred CCCEEEEEECCCcEEEEEcC
Q 005123 366 HEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~ 385 (713)
..++|+++++||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 68999999999999999874
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=290.71 Aligned_cols=289 Identities=23% Similarity=0.411 Sum_probs=250.2
Q ss_pred CCCCCceEEEEEccCCCEEEEEE--CCCcEEEEeCCC------------CceEEEEeccCCCEEEEEEccCCCEEEEEeC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGS--QSGEFTLWNGQS------------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs--~dg~V~Iwd~~t------------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
..+...|.+|+.++|+..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 33456799999999999999999 899999998432 2334566789999999999999999999999
Q ss_pred CCcEEEEEcCC------------------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc
Q 005123 207 GGAIKYWQNNM------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 207 DG~I~vwdl~~------------------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
|+.|.||+... .+.+..+.+|...|.+++|++++.+|++++.|++|.|||..+.+.+.++++
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 135667789999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC------CCCeEEEEEcCCCCEEEEEEC----CCeEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTASK----DQIIKL 338 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h------~~~I~si~fspdg~~Latgs~----Dg~I~I 338 (713)
|...|..+.|+|-|++|++-+.|++|+||++.+....+.+..+ ...+..+.|||||.+|++... ..++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 9999999999999999999999999999998887777666543 345789999999999997642 347999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCC----C--------CC----EEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPF----H--------EE----YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~----~--------~~----~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
.+-.+++.-..|-+|.+.+.+++|+|. . .+ .+|+|+.|++|.||........+.+.......|.
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 999999988999999999999999882 1 11 6889999999999999888877777777788999
Q ss_pred EEEEcCCCc--EEEEeCCcEEEEecCCCC
Q 005123 403 DLAWHPIGY--LLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 403 ~l~~spdg~--~laS~Dg~v~iWd~~~~~ 429 (713)
+++|++||. ++||.||+|.+..++..+
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 999999994 447899999999986543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=268.32 Aligned_cols=282 Identities=21% Similarity=0.380 Sum_probs=249.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..+.|+++.|..+++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4577899999999999999999999999999999977665 67778888899999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+......++.+|.+.|+++.|......+++++.|.+|++||+.+..+.+++. ..+.+.+|+.+ ...+++|..|++|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999999888889999999999999999988877765 44567777776 56789999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----CCCeEEEEEeCCCCCEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----~~~V~sl~fsp~~~~~la 371 (713)
+||+++..++.....+. .|+++..+.++..|++++.|.++.++|+++.+....+... ...++.+.||| ++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceee
Confidence 99999999998887554 8999999999999999999999999999999888777542 24589999999 899999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCC-CeEEEEEcCCCcEEE--EeCCcEEEEe
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLC--SNDHTTKFWC 424 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~la--S~Dg~v~iWd 424 (713)
+||.||.|+||++.+++....+...+.. .|++++|++.|..+. +.++.+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999888866666555555 799999999986664 4889999993
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=249.48 Aligned_cols=244 Identities=22% Similarity=0.363 Sum_probs=221.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~ 217 (713)
.+++|++.|..+.|..|++.|++++.|.+|+.||.++++.++.++.|.+.|+++.-+.-|. ++.+++.|++++|||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 4569999999999999999999999999999999999999999999999999999665554 555889999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+.++++ ..+..++++.|..++..+++|+-|+.|++||+++.+....+.+|.+.|+.+..+++|.++++-+.|.+|++|
T Consensus 165 k~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw 243 (338)
T KOG0265|consen 165 KEAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW 243 (338)
T ss_pred cchhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence 8887765 346789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC----CceEEEEccCC----CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 298 DAKS----GRELCSFHGHK----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 298 Dl~t----~~~~~~~~~h~----~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|++- .+++..+.++. .....++|+|+++++.+|+.|+.+++||..+...+..+.+|.+.|.+++|+| ...+
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~i 322 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPI 322 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcE
Confidence 9984 34577776543 3456778999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEECCCcEEEEEc
Q 005123 370 FVSGSLDGSIFHWLV 384 (713)
Q Consensus 370 lasgs~DG~I~Iwd~ 384 (713)
|.+++.|.+|++=++
T Consensus 323 ils~~sdk~i~lgei 337 (338)
T KOG0265|consen 323 ILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeccCceeEeecc
Confidence 999999999987543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=268.37 Aligned_cols=246 Identities=16% Similarity=0.347 Sum_probs=220.5
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl 215 (713)
.+++.+|+..|.+++|+.+|..+++++.|+.|++||+++++++..+.. ...++|+.|.||+ +.+++|+.|+.|+.||+
T Consensus 251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 457889999999999999999999999999999999999999988874 6678999999999 88999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++++++..+..|-+.|..+.|-+++++++++++|++|+||+.+....+..+. .+....-||..+|+++++++-+.|+.|
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI 409 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence 9999999999999999999999999999999999999999998876655433 234567899999999999999999999
Q ss_pred EEEECCCCc---eEEEEccCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 295 KLWDAKSGR---ELCSFHGHK--NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 295 ~IwDl~t~~---~~~~~~~h~--~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
.||.+...- ..+.+++|. +.-..+.|||||++|++|+.||.+.+||.++.+.+..++.|+..+..+.|+|.....
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSK 489 (503)
T ss_pred EEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcce
Confidence 999875422 233455654 456778999999999999999999999999999999999999999999999988889
Q ss_pred EEEEECCCcEEEEE
Q 005123 370 FVSGSLDGSIFHWL 383 (713)
Q Consensus 370 lasgs~DG~I~Iwd 383 (713)
+|+++.||.|++||
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=251.73 Aligned_cols=247 Identities=19% Similarity=0.281 Sum_probs=217.4
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+...+.+|+++|+|+.||.||.+||||+.+|.|+||+..++.....+...-..|.=+.|+|.+..|+.|+.||.|-+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34568899999999999999999999999999999999999988888766778889999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc---------------------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------------------------- 268 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--------------------------- 268 (713)
.+....+.+.+|...+++=.|.++|++++++..||+|++||..++..+.++..
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 99888889999999999999999999999999999999999988876655431
Q ss_pred ------------------------CCCc---eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEc
Q 005123 269 ------------------------HGWD---VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321 (713)
Q Consensus 269 ------------------------h~~~---V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fs 321 (713)
+... |.++.|+..=.+.|+|+.||+|.|||+...+....+. |...|+.+.|-
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~ 336 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL 336 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence 0111 2223333344578899999999999999877666555 88889999998
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
. ..+|++++.||.|++||.|+|.++.++.+|...|.++++++ +.++++|+|.|++.+||++.
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 7 68999999999999999999999999999999999999999 89999999999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=266.19 Aligned_cols=242 Identities=22% Similarity=0.340 Sum_probs=222.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
++.-..-+|++..|-...+++++|+.|..|+||+..+++.++.+..|.+.|+||+.+|...+++++++|-+|++||.+.+
T Consensus 50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 34445668889999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -ceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcE
Q 005123 219 -NVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLV 294 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I 294 (713)
.+..++.+|...|.+++|+| |.+.+++++.|++|+||.+.+.....++.+|...|+||++.+. .-+|++|++|.+|
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 67888999999999999998 5588999999999999999999999999999999999999884 4599999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+|||..+..|+.++++|...|+.++|+|.-.+|++|++||+++||...+.+...++.---..|++|+-.+ +.+.++.|.
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~ 288 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGF 288 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEec
Confidence 9999999999999999999999999999999999999999999999999888888877778899999888 677788888
Q ss_pred CCCcEEE
Q 005123 375 LDGSIFH 381 (713)
Q Consensus 375 ~DG~I~I 381 (713)
++|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 8776643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=270.80 Aligned_cols=281 Identities=17% Similarity=0.221 Sum_probs=218.0
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE-------------EEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-------------MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~-------------~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~ 211 (713)
.|+....+.|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|++ ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3445555556555666666665666654333221 24678999999999999 889999999999999
Q ss_pred EEEcCCCc-------eeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 212 YWQNNMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 212 vwdl~~~~-------~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
|||+.++. .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99997652 456678899999999999975 6899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEccCCCC-eEEEEEcCCCCEEEEEE----CCCeEEEEECCCCee-EEEeecCC-CC
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LESFRGHR-KD 356 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~-I~si~fspdg~~Latgs----~Dg~I~IwDl~t~~~-l~~~~~h~-~~ 356 (713)
+|++++.|++|+|||+++++.+..+..|... +..+.|.+++..|++++ .|+.|+|||+++... +..+..+. ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999888888764 45678998887777654 478999999987653 33333333 44
Q ss_pred eEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 357 VTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
+....|++ ++++|++++ .|+.|++||+.++.........+...+..++|.+...+=+..-...|+|.+..
T Consensus 262 ~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 262 LFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALTY 332 (493)
T ss_pred eEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEecC
Confidence 55667888 677777776 59999999998776544444445667889999987544344555567777643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=271.44 Aligned_cols=246 Identities=26% Similarity=0.461 Sum_probs=222.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+..|.++|+.|+|++++.++++|+.|-.|+||+.++.+++.++.+|-+.|+.+.|++.--+|+++++|-+|+||++.+.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-----------------------------eeEEEEccC
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----------------------------QEERSLTGH 269 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-----------------------------~~~~~l~~h 269 (713)
+++..+.+|...|.|..|++.+..++++|.|-+|||||+..- .....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 999999999999999999999999999999999999998321 123456789
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
...|+.++|+|.-.+|++|++|..|++|.....+ .+-+..+|.+.|+++-|+|..++|++.++|++|+|||+...+.+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 9999999999999999999999999999987644 35567889999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.+|+...+..+.++-+| ..+++++|- |+-+.||.++.
T Consensus 286 ~tfrrendRFW~laahP-~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHP-ELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred eeeeccCCeEEEEEecC-Ccceeeeec-CCceEEEEEcc
Confidence 99998888999999999 777777665 44555666643
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=258.43 Aligned_cols=250 Identities=18% Similarity=0.364 Sum_probs=218.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+..++.+|..+|..+.||||.++|++|+.|..+.+||+.++.+...+.. +...+.+++|.|||..+++|+.|+.|..||
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 4568899999999999999999999999999999999999988877653 468899999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++.+....-.......|.+++.+.||+++++.+.|..|++++.++......+. ....|++++++.|++++++.-.+..|
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred CCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCee
Confidence 98665332222233579999999999999999999999999998765554443 56789999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCC--eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNM--VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~--I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
.+||++..+.++++.+|+.. |..-+|-- +..++++|++|+.|+||+..+++.+.++.+|...|++++|+|.+...+|
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh
Confidence 99999998889888888654 44445644 5689999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEEcCC
Q 005123 372 SGSLDGSIFHWLVGH 386 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~ 386 (713)
++++||+|+||....
T Consensus 500 SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCeEEEecCCc
Confidence 999999999998754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-29 Score=268.14 Aligned_cols=277 Identities=22% Similarity=0.375 Sum_probs=239.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
..+-++|+ ..+.||+|.. ..|++|+..+++.......++..|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 179 Y~nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hhhHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 34556788 4446666654 479999999998777777668999999999999999999999999999999999888888
Q ss_pred c-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 226 A-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 226 ~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
. |...|-+++|. +..+.+|+.|+.|.++|++..+.... +.+|...|..++|++|+++|++|+.|+.|.|||....+
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 99999999996 77899999999999999988766555 88899999999999999999999999999999998888
Q ss_pred eEEEEccCCCCeEEEEEcC-CCCEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcE
Q 005123 304 ELCSFHGHKNMVLCVKWNQ-NGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSI 379 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fsp-dg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I 379 (713)
.+..+..|.+.|..++|+| ...+||+|+ .|++|++||+.+++.+..+. ....|++|.|++...+++.+.+ .++.|
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 8999999999999999999 677888764 79999999999999988876 5678999999995445555443 46789
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.||+..+.+ ....+.+|...|..++++||+..+++ .|.+++||++-..
T Consensus 414 ~lw~~ps~~-~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 414 TLWKYPSMK-LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEeccccc-eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999997744 56667789999999999999977765 9999999998554
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=226.19 Aligned_cols=287 Identities=21% Similarity=0.386 Sum_probs=236.8
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC------C---------ceEEEEeccCCCEEEEEEccCCCEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------F---------NFEMILQAHDHAIRSMVWSHNDNWM 201 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t------~---------~~~~~l~~h~~~V~sl~~spdg~~L 201 (713)
...+......|++++|+|.|.+.++|+...+++|..... . ...+.-+.|.+.|.|.+|+++|.+|
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 334455667899999999999999999999998874221 1 1123345689999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCc-----eeeeeccCCCCeeEEEEecC----CCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCC
Q 005123 202 VSGDDGGAIKYWQNNMNN-----VKANKSAHKESVRDLSFCRT----DLKFCSCS-DDTTVKVWDFARCQEERSLTGHGW 271 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~-----~~~~~~~~~~~V~~l~fs~d----g~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~ 271 (713)
++|+.|.+|++..++... ....+.-|.+.|.+++|..+ +..|++++ .|..|++-|..+++....+.+|.+
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 999999999998665432 23345678999999999754 34566554 477888889999999999999999
Q ss_pred ceEEE-EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 272 DVKSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 272 ~V~sl-~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
-|.++ .|+ +-++++|+.|.+|++||++-..+++++.. ..+.|.+++..|.|++|++|-.|....+||++.
T Consensus 185 hilalyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 185 HILALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred cEEEEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 98876 454 88999999999999999999888887642 235799999999999999999999999999999
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC---CceEEEecccCCCeEEEEEcCCCcEEE--EeCC
Q 005123 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDH 418 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg 418 (713)
++.+..|..|...|.++.|+| +..++++++.|..|++-|+... ...+.+...|.+.+..+.|++..+-+. |.|.
T Consensus 263 ~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 999999999999999999999 8999999999999999998533 233445667899999999999885443 3999
Q ss_pred cEEEEecC
Q 005123 419 TTKFWCRN 426 (713)
Q Consensus 419 ~v~iWd~~ 426 (713)
++.+|.++
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=275.59 Aligned_cols=267 Identities=25% Similarity=0.365 Sum_probs=237.8
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..++...+.+|.+.|.++++..-+++|++|+.|.+++|||+.++.+..++.+|.+.|.++.. ...++++|+.|.+|+|
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKV 315 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEE
Confidence 44555669999999999999988899999999999999999999999999999999999987 4567888999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
|+++++..+..+.+|...|+++.++ +.++++++.|++|+|||+.+++++..+.+|...|.++.+... ..+++|+.|+
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999999999998899999999996 889999999999999999999999999999999999988855 8999999999
Q ss_pred cEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCCCCCEE
Q 005123 293 LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 293 ~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~~~~~l 370 (713)
+|++||+++. +++.++.+|...+.++.+ .+++|++++.|++|++||..++++++++.+ |...|+++++. ...+
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~i 467 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEI 467 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceE
Confidence 9999999999 999999999998877766 678999999999999999999999999998 67889998874 5789
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
++++.||++++||+++.......+.........+++...
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP 506 (537)
T ss_pred EEEecCCeeEEEecccCchhhhhhhcccccccccccCCC
Confidence 999999999999999887666554433344444444433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=258.07 Aligned_cols=282 Identities=22% Similarity=0.307 Sum_probs=235.6
Q ss_pred CCCCceEEEEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
+..+.|++++|+|..-+ +|+.+ .-.|.||+..+....+.+......|.+++|..||++|++|+..|.|+|||+.+...
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 44568999999996543 33333 34699999999888888888899999999999999999999999999999888778
Q ss_pred eeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwD 298 (713)
+..+.+|...|..+.|++.+ ..|++|++|+.+++||+.+......+.+|++.|.|.+|++. +.++++|+.||+|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 88899999999999999865 55778899999999999998887789999999999999995 55899999999999999
Q ss_pred CCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 299 AKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 299 l~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
+++. ..+.++. |...|.++.+-+.|..|++++. ..|+|||+.+|. .+..+..|...|+|+++.. ++..|++++-|
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD 259 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLD 259 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccc
Confidence 9987 5666665 8999999999999999998875 469999999654 4555556999999999998 78999999999
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-eCCcEEEEecCCCC
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~Dg~v~iWd~~~~~ 429 (713)
+.|+|||+.+-+ .+..+ ...++|.+|+.++++..++ + .||.+.+-+.....
T Consensus 260 ~~VKVfd~t~~K-vv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 260 RHVKVFDTTNYK-VVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred cceEEEEccceE-EEEee-ecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 999999975444 33333 2478999999999885554 4 88888777444333
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=258.25 Aligned_cols=285 Identities=21% Similarity=0.340 Sum_probs=243.1
Q ss_pred EeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..|.+|++.|.|++=+|.. ..+++|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4568999999999999987 8899999999999999999999999999999999999975 788899999999999877
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVK 295 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~ 295 (713)
.. .+.++ ..+..+..|.-+..++.+++|+.+ |.|||......+..+.-....|.++.|+|.. ..|++|..|+.|.
T Consensus 138 ~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 138 GP-PLHTI-LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred CC-cceee-eccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 64 33333 345667788888788889998874 9999999888999998888899999999954 4677777999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
|||++++..+.++. ....-+.|+|+|.+-.|+++++|..++.||++..+ .+..+.+|.+.|.+++||| .+.-|++||
T Consensus 214 LyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Efvsgs 291 (433)
T KOG0268|consen 214 LYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGS 291 (433)
T ss_pred EEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchhcccc
Confidence 99999999887765 34567889999988888899999999999999754 5788899999999999999 789999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.|.+|+||.++.....-......-..|.|+.|+-|..++.| +|+.|++|.-+..+.
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999997765443333333467999999999988765 999999998765443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=244.27 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=251.3
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+.+.+|++.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 45678899999999999988889999999999999999999999999999999999999999999999999999999961
Q ss_pred ------CC--------C--------------------------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEE
Q 005123 216 ------NM--------N--------------------------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 216 ------~~--------~--------------------------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iw 255 (713)
.. . ..+..+.+|...|.+..|...++.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 0 0123356788889999999999999999999999999
Q ss_pred EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
|+++++.+..+.+|....+.++-+|..+++++++.|.+.++||.+.. ..+..|.+|...|+++.|..|. .+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence 99999999999999999999999999999999999999999999853 4567899999999999998765 589999999
Q ss_pred eEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc---eEEEecccCCCeEEEEEcCCC
Q 005123 335 IIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 335 ~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg 410 (713)
+|+|||+++.+. +.+++ .++.++.++.+. +..+|+.--++..|++||++.... ......+|...|+|++|..+.
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999998764 55555 678899999997 777888888888999999954331 122446799999999999765
Q ss_pred ----cEEEEeCCcEEEEecCCCC
Q 005123 411 ----YLLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 411 ----~~laS~Dg~v~iWd~~~~~ 429 (713)
.+.|+.|..+.-|+++.+.
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 5557799999999997654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=284.67 Aligned_cols=261 Identities=19% Similarity=0.290 Sum_probs=220.7
Q ss_pred CCcEEEEeCCCCceEEEE-----eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--------eeeeeccCCCCe
Q 005123 165 SGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESV 231 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l-----~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--------~~~~~~~~~~~V 231 (713)
+|.+++|+..+.+....+ ..|...|++++|++++++|++|+.|+.|+|||++... ....+ .+...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 677888988876654443 3488999999999999999999999999999975421 11222 235678
Q ss_pred eEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 232 RDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 232 ~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+++|++ ++.+|++++.|++|++||+.+++.+..+.+|...|++++|++ ++.+|++|+.|++|+|||+++++.+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 478999999999999999999999999999999999999996 78899999999999999999999888887
Q ss_pred cCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 310 GHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 310 ~h~~~I~si~fs-pdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
. ...|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 616 ~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 4 4679999995 479999999999999999998766 467788999999999997 4678999999999999999743
Q ss_pred -----CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 388 -----TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 388 -----~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
...+..+.+|...+.+++|++++.++++ .|+.|+||+.....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 2345567789999999999999987765 89999999976543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=271.98 Aligned_cols=294 Identities=17% Similarity=0.258 Sum_probs=219.2
Q ss_pred ceeeeEEEEeeC-CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEE-------------EEc
Q 005123 130 SFAAKFVHTSLN-KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM-------------VWS 195 (713)
Q Consensus 130 ~~~~~~~~~~l~-~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl-------------~~s 195 (713)
.+........+. .|++.|+|+.||+||+|||+|+.|+.|+||.+...+... .+...-.++ .-+
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~ 328 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSS 328 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCccccc
Confidence 344555666777 999999999999999999999999999999976533311 111111111 111
Q ss_pred c---CCC--EEEEEeCCCcEEEEEcC----CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 196 H---NDN--WMVSGDDGGAIKYWQNN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 196 p---dg~--~L~sgs~DG~I~vwdl~----~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
. .++ ..-.+.....+ +.+.. ..+.+..+.+|...|.+|+|+. +.+|++++-|.+||+|++.+.+++..|
T Consensus 329 ~~~~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F 406 (712)
T KOG0283|consen 329 EEKISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF 406 (712)
T ss_pred cccccccccccccccCCccc-cCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE
Confidence 1 001 11122222222 22211 2355667889999999999995 458999999999999999999999998
Q ss_pred ccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 267 TGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 267 ~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
. |.+.|+||+|+| |.++|++|+-|++|+||++...+.+.- .....-|++++|.|||++.++|+.+|.+++|+++..+
T Consensus 407 ~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 407 S-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred e-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 7 999999999999 889999999999999999987665544 4455889999999999999999999999999999877
Q ss_pred eEEEee--cC------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE-
Q 005123 346 ELESFR--GH------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 346 ~l~~~~--~h------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS- 415 (713)
....+. .| ...|+.+.|.+.+...|++.+.|..|+|||.++...+.++...+. ..-....|+.||.+|++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 654432 11 237999999986777788889999999999976654444433332 33456788899977754
Q ss_pred -eCCcEEEEecCCCCC
Q 005123 416 -NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~ 430 (713)
+|..|+||+++....
T Consensus 565 seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSFNS 580 (712)
T ss_pred ecCceEEEEeCCCCcc
Confidence 999999999865543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=243.03 Aligned_cols=246 Identities=22% Similarity=0.368 Sum_probs=224.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
-++.+|++.|++..++.+..+.|+++.|-+-+|||.-++..+..+. |..-|.+++|+.|.++|++|+.+..++|||++.
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 4678999999999999999999999999999999999998888776 888999999999999999999999999999987
Q ss_pred Cc-eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 218 NN-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 218 ~~-~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
.+ ....+.+|.+.|..+.|+..++.|+++++|++||+||.++++.+.++. ....|+++.++.+|++|.++. .+.|.+
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~F 209 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKF 209 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEE
Confidence 54 456678999999999999999999999999999999999999999887 667899999999998776654 578999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe-ecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
||.++...++.++ -...|.+.+++|+...+++|++|..++.||..+++.+..+ ++|-+.|.|+.|+| ++.+.++||+
T Consensus 210 wdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSE 287 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSE 287 (334)
T ss_pred eccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCC
Confidence 9999998888876 5567999999999999999999999999999999999986 89999999999999 8999999999
Q ss_pred CCcEEEEEcCCCC
Q 005123 376 DGSIFHWLVGHET 388 (713)
Q Consensus 376 DG~I~Iwd~~~~~ 388 (713)
||+|+||.+.-.+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999885443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=233.40 Aligned_cols=249 Identities=21% Similarity=0.335 Sum_probs=217.3
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
....+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t--~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~ 335 (713)
++++.++.+.+|...|+.|.|+.+...+++|+.|.+|++||.++ .+.+..+......|.+|..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999986 45778888888899999984 668999999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE--EEEEcCCCcEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW--DLAWHPIGYLL 413 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~--~l~~spdg~~l 413 (713)
++.||++.++....+- ..+|++++|++ +++.+++++.|++|++.|-.+++ ++....+|.+.-. +++++.....+
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGk-lL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGK-LLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecC-CCCEEEEeeccceeeecccchhH-HHHHhcccccceeeeeeeecccceeE
Confidence 9999999998765554 45799999999 89999999999999999987776 4445556765433 34555555444
Q ss_pred E--EeCCcEEEEecCCCCCcc
Q 005123 414 C--SNDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 414 a--S~Dg~v~iWd~~~~~~~~ 432 (713)
+ |+||.|.+||+.......
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EeccCCceEEEEEeccceeee
Confidence 3 499999999996655443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=247.35 Aligned_cols=281 Identities=21% Similarity=0.355 Sum_probs=249.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...|.++...+..+.++||+.|..+.++|..+...+..+.+|...|+.+.|+++...+++++.|..|+||..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 35688899988888999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
...|.+.|+.+..++.+.||+++++|++..+.|++++..+..... ..-.+++.+|+|||.+|.+|..|+.|+|||+++
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 889999999999999999999999999999999999988776654 334689999999999999999999999999999
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
...+..|.+|.+.|..|+|+.+|-||+++++|+.|++||+|..+...++...+ ..|.++.|.. .+.+|+.++.|=.|+
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEE
Confidence 99999999999999999999999999999999999999999988887776433 4699999998 899999998887777
Q ss_pred EEEcCCC-CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 381 HWLVGHE-TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 381 Iwd~~~~-~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
+++-.+. ...+.....|.+..+++.|..+..++++ .|..++|+.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7774332 3344455567788999999999988875 8888888865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=249.92 Aligned_cols=275 Identities=21% Similarity=0.359 Sum_probs=238.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE----E-------------E-eccCCCEEEEEEccCCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM----I-------------L-QAHDHAIRSMVWSHNDN 199 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~----~-------------l-~~h~~~V~sl~~spdg~ 199 (713)
..+..|.-+|.||++++|++++++++.|++|.-|++.+++... . - +.|.+.|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4677899999999999999999999999999999987766331 1 0 26788899999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEc
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s 279 (713)
+|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++....+.++.+|.+.|.+|...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999888899999999999999999988899999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-C-----
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-H----- 353 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h----- 353 (713)
..++.+.+|+.|+++++|++.. +....+.++.+.+-|++|-. ...|++|+.||.|.+|++.+.+.+.+... |
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE 373 (479)
T ss_pred cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence 8888888888999999999953 34445777888999999974 56799999999999999999888876642 2
Q ss_pred ------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCc-EEEE
Q 005123 354 ------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGY-LLCS 415 (713)
Q Consensus 354 ------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~-~laS 415 (713)
..+|++|+..+ +.+++++|+.+|.|++|.+..+...+.++.. -.+.|++|+|+.+|. ++++
T Consensus 374 ~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 23899999999 8999999999999999999888554443322 467899999999997 4454
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=264.54 Aligned_cols=263 Identities=15% Similarity=0.204 Sum_probs=205.5
Q ss_pred EECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCc--------eeeeeccCCCCee
Q 005123 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESVR 232 (713)
Q Consensus 162 gs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~--------~~~~~~~~~~~V~ 232 (713)
|+.++.|+||+......+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998888888899999999999999997 7899999999999999997642 2335678999999
Q ss_pred EEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC
Q 005123 233 DLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311 (713)
Q Consensus 233 ~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h 311 (713)
+++|++++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998876 5788999999999999988777775 5678999999999999999999999999999999999999988
Q ss_pred CCCeEE-----EEEcCCCCEEEEEECCC----eEEEEECCC-CeeEEEeecCCC-CeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 312 KNMVLC-----VKWNQNGNWVLTASKDQ----IIKLYDIRA-MKELESFRGHRK-DVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 312 ~~~I~s-----i~fspdg~~Latgs~Dg----~I~IwDl~t-~~~l~~~~~h~~-~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
.+.+.+ ..|++++++|++++.|+ .|+|||+++ .+.+..+..+.. .+....|.++++.+|++|+.|++|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876433 33567889999888764 799999995 455555432221 2222344454788999999999999
Q ss_pred EEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 381 Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
+|++..+.........+...+.+++|.|+..+=+..-...|+|.+
T Consensus 289 ~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl 333 (568)
T PTZ00420 289 YYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDVYKCEIGRVYKN 333 (568)
T ss_pred EEEccCCcEEeecccccCCCccceEEccccccCchhhhHhHHhhh
Confidence 999976532111122255778899999976433334444455554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=251.39 Aligned_cols=282 Identities=17% Similarity=0.294 Sum_probs=241.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---ceEEEEec--cCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
.....|..-|.++.+|...++++||+. |.|+|||+..- ..+..+.. -+..|+++.+++||+.|++|++-.+|.|
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 345579999999999999999999985 67999997643 22333332 3567999999999999999999999999
Q ss_pred EEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||+.... +...+....-.+.+|+.++|.+..++|+.||.|.|||+.+...++.|.+|.+.+.||.++.||..|.+|+-
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 9998654 34444444567888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
|++|+.||+++++.+.... ..+.|.++.++|++.||++|-+++.+.|.... +.....+..|++.|.++.|.. .++++
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwf 648 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWF 648 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCcee
Confidence 9999999999998876654 66789999999999999999999999998876 444566777999999999999 89999
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
++.+.|..+..|..--+..++.... .+.|.++.++-|.++|++ .|....||.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999988777666554 678999999999988876 7778888865
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=243.77 Aligned_cols=244 Identities=25% Similarity=0.425 Sum_probs=211.4
Q ss_pred EeeCCCCCceEEEEEccCCC---EEEEEECCCcEEEEeCCCCce----EEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 138 TSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~---~Latgs~dg~V~Iwd~~t~~~----~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..+.+|.+.|.+++|.-... .|++++.|.++++|..+.++. +....+|+..|.+|+...++..+++|+.|.+|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 46779999999998876544 499999999999998776543 34445999999999999999999999999999
Q ss_pred EEEEcCC-------------------------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 211 KYWQNNM-------------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 211 ~vwdl~~-------------------------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
+||+.++ ...+..+.+|.+.|.++.|+. ...+++++.|.+|++||++++..+.+
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~ 296 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST 296 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee
Confidence 9998321 113445678999999999997 77899999999999999999998888
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl 341 (713)
+. ....++||+.++..++|++|+.|..|++||.+++. ....+.+|.+.|.++.|+|. ...|++++.|+++++||+
T Consensus 297 ~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 297 LT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 87 45679999999999999999999999999999754 34678899999999999995 456779999999999999
Q ss_pred CCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 342 RAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 342 ~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
|+.+ .+..+.+|.+.|.++.|+. +.+|++|+.|.+|+|+.-.
T Consensus 376 RS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEeccc
Confidence 9887 8999999999999999984 7899999999999999753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=238.13 Aligned_cols=242 Identities=23% Similarity=0.419 Sum_probs=213.0
Q ss_pred CCCceEEEEEccCC-CEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc
Q 005123 143 NRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 143 H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~ 219 (713)
-.+.+..|+|+++. +.+++++.||+++|||+.. .+.+..++.|+..|.++.|+... ..+++++.|++|++|+.+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45679999999964 6788999999999999543 45678889999999999998854 567788999999999999999
Q ss_pred eeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005123 220 VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~Iw 297 (713)
.+.++.+|...|...+|++ ..+.+++++.|+++++||++.......+..|...|.|+.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999998 458899999999999999987555555888999999999998 66789999999999999
Q ss_pred ECCCCc-eEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGR-ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~-~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
|+++-+ .+..+.+|.-.|..++|||. ..+|++++.|-+++|||.... ..+.+...|..-|..+.|+..+..++|+++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 999854 57788999999999999994 578899999999999998744 456677789999999999999999999999
Q ss_pred CCCcEEEEEc
Q 005123 375 LDGSIFHWLV 384 (713)
Q Consensus 375 ~DG~I~Iwd~ 384 (713)
.|..++||+-
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999983
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=258.15 Aligned_cols=283 Identities=22% Similarity=0.340 Sum_probs=243.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE--EEEeccCCCEEE-EEEcc-CCCEEEEEeCCCcEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MILQAHDHAIRS-MVWSH-NDNWMVSGDDGGAIK 211 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~--~~l~~h~~~V~s-l~~sp-dg~~L~sgs~DG~I~ 211 (713)
+...+.+|+..|..+++..+. .+++++.||+++||+-.....+ ..+.+|.+.|.+ +++.+ ++-.|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 456789999999999887555 7999999999999997655443 456678888877 88875 445699999999999
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
+|.........++++|+..|++++...++. ++++|.|.++++|... ++...+.+|...|.+++..+++ .+++|+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999999887777 9999999999999764 4556689999999999999987 89999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
.+|++|.- ++.+++|.+|.+.|..+++-+++ .|++++.||.|++||+ +++++.++.+|..-|++++... ++..|+
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv 235 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV 235 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence 99999975 78899999999999999998664 5889999999999999 6899999999999999999766 788999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCc
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~ 431 (713)
++++|++++||+.. .+...+......||++.+-.+|.++++ .||.||||..+.....
T Consensus 236 s~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccC
Confidence 99999999999976 445555545668999999988877765 9999999998755543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=235.30 Aligned_cols=244 Identities=22% Similarity=0.358 Sum_probs=214.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~--~L~sgs~DG~I~vwdl~ 216 (713)
.+..|.++|+||+.+ +.++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 456799999999995 89999999999999999999999999999999999999998765 89999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
...++..++.|...|+.|+++|.+++.++.+.|+.++.||+.+++.-..+. .....+.|.|++.|.+++.+..+ .|-|
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEE
Confidence 999999999999999999999999999999999999999999887766554 23344559999999999988874 5999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC-CCCCEEEEEEC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP-FHEEYFVSGSL 375 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp-~~~~~lasgs~ 375 (713)
|.+.+.+....+. ....+.|+.|- ++.+|++|.+|+.|++||.++..++..|.+|...|.++.+-. ....+|+++|.
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 9998877666554 33567888876 667899999999999999999999999999999999998532 25679999999
Q ss_pred CCcEEEEEcCCCC
Q 005123 376 DGSIFHWLVGHET 388 (713)
Q Consensus 376 DG~I~Iwd~~~~~ 388 (713)
||.|+|||++...
T Consensus 272 DG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 272 DGFIKVWDIDMET 284 (362)
T ss_pred CceEEEEEccccc
Confidence 9999999997764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=234.49 Aligned_cols=294 Identities=16% Similarity=0.265 Sum_probs=232.0
Q ss_pred CCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE--EE--EeccCCCEEEEEEccCCCEEEE
Q 005123 128 STSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MI--LQAHDHAIRSMVWSHNDNWMVS 203 (713)
Q Consensus 128 ~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~--~~--l~~h~~~V~sl~~spdg~~L~s 203 (713)
...+...+....|++|++.|++++|+.||++|||++.|+.|+||++.+.... +. ....-+.-+.+.|++|.+.+++
T Consensus 70 q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 70 QPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred CCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 3445566666789999999999999999999999999999999998875321 11 1112235678999999887665
Q ss_pred E-eCCCcEEEEEcCCC---ce---------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 204 G-DDGGAIKYWQNNMN---NV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 204 g-s~DG~I~vwdl~~~---~~---------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
. -...++++|.+... .. ...-+.|...|.++-...++.+|++++.|.+|.+||++ ++.+..+....
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 4 45567999975422 11 11123456677778888889999999999999999998 88888888777
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECC---CC-----ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---SG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~---t~-----~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
..-...+++|+|++|++++..-.|++|.+- .| +.+..+++|.+.|..++||++.+.+++.+.||+++|||++
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 788889999999999999998999999863 22 2456788999999999999999999999999999999986
Q ss_pred CC-------eeEEEe----ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 343 AM-------KELESF----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 343 t~-------~~l~~~----~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
-. +.+++. ....+.-..++.+| ++..|+.+. ...|++|..++++..-.+...|...|.+|+|+++|+
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK 386 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence 32 122222 12234456899999 777776654 458999999888877788888999999999999999
Q ss_pred EEEE-eCCcEEEEe
Q 005123 412 LLCS-NDHTTKFWC 424 (713)
Q Consensus 412 ~laS-~Dg~v~iWd 424 (713)
++++ .|..++++.
T Consensus 387 ~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 387 YIATCGDRYVRVIR 400 (420)
T ss_pred EEeeecceeeeeec
Confidence 9998 999999985
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=257.25 Aligned_cols=240 Identities=24% Similarity=0.468 Sum_probs=220.5
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
++.|+++.|+++|++|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.|+.|.++|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 88999999999999999999999999999999999999998 99999999997 7889999999999999999876554
Q ss_pred e-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEe--CCCcEEEEE
Q 005123 223 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG--KDSLVKLWD 298 (713)
Q Consensus 223 ~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs--~Dg~I~IwD 298 (713)
. +.+|...|+.++|++|+.+||+++.|+.|.|||....+.+..+..|...|..++|+| ...+||+|+ .|++|++||
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 4 788999999999999999999999999999999988888999999999999999999 567888864 699999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEE--EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Lat--gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
+.+++.+..+. ..+.|++|.|++..+-|++ |..+..|.||+..+.+.+..+.+|...|..++++| ++..|++|+.|
T Consensus 375 ~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~D 452 (484)
T KOG0305|consen 375 TNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAAD 452 (484)
T ss_pred cCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEeccc
Confidence 99999988876 5678999999998876765 45677899999999999999999999999999999 79999999999
Q ss_pred CcEEEEEcCCC
Q 005123 377 GSIFHWLVGHE 387 (713)
Q Consensus 377 G~I~Iwd~~~~ 387 (713)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=247.25 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=224.7
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce----EEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF----EMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~----~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~ 211 (713)
...+.+|...|+++++.+.|.+|++|+.|-.|++||+..... .+.+ ......|+++.|++.++.|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 346889999999999999999999999999999999775332 2222 23456799999999999999988889999
Q ss_pred EEEcCCCceeee------------eccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee-EEEEc-----cCCCc
Q 005123 212 YWQNNMNNVKAN------------KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWD 272 (713)
Q Consensus 212 vwdl~~~~~~~~------------~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~-~~~l~-----~h~~~ 272 (713)
|+|-+....... .++|...++|.+|+|+. ..|++|+.||++||||+++.+. +..++ +..-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999765544332 25788899999999976 5689999999999999976543 22222 23456
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-e
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E 346 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~---~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~ 346 (713)
+++++|++|+++||+|+.||.|.+||..+... ...-.+|.. .|+||+||.||++|++-+.|+++++||++..+ +
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 89999999999999999999999999865321 223345666 89999999999999999999999999999765 3
Q ss_pred EEEeecC--CCCeEEEEEeCCCCCEEEEEEC------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE-Ee
Q 005123 347 LESFRGH--RKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC-SN 416 (713)
Q Consensus 347 l~~~~~h--~~~V~sl~fsp~~~~~lasgs~------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la-S~ 416 (713)
+.++.+- ...-+.++||| +..+|++|+. .|++++||..+-..+.++.. ....|..+.|+|.- .+++ +.
T Consensus 400 L~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred hhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeecC
Confidence 4444432 23567899999 7889998864 56899999877665555543 47789999999975 3444 49
Q ss_pred CCcEEEEe
Q 005123 417 DHTTKFWC 424 (713)
Q Consensus 417 Dg~v~iWd 424 (713)
||+++||-
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 99999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=248.62 Aligned_cols=243 Identities=27% Similarity=0.414 Sum_probs=215.5
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~ 216 (713)
+++..-++.|.+++|-.||++||+|+..|.|+|||.++...++.+.+|...|..+.|++.++ .|++|++|+.+++||+.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 34556788999999999999999999999999999888778888999999999999999765 56688888999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+..+...+.+|++.|.|.+|++-. ..+++|+.||+|++||++.. ..+.++. |...|.++.+.+.|..|++++. ..|
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 998877889999999999999865 57899999999999999887 5566665 9999999999999999998875 679
Q ss_pred EEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 295 KLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 295 ~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
+|||+.+|. .+..+..|...|+|+++..++..|++++-|+.|++||+.+.+.+..+. ..+.|.+++.++ ++..++.|
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEe
Confidence 999999654 455555599999999999999999999999999999999999998887 678999999999 78889999
Q ss_pred ECCCcEEEEEc
Q 005123 374 SLDGSIFHWLV 384 (713)
Q Consensus 374 s~DG~I~Iwd~ 384 (713)
-.||.+.+-+.
T Consensus 298 msnGlv~~rr~ 308 (487)
T KOG0310|consen 298 MSNGLVSIRRR 308 (487)
T ss_pred cccceeeeehh
Confidence 99999888754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=259.17 Aligned_cols=277 Identities=23% Similarity=0.396 Sum_probs=238.3
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEeCCCCc------eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--c
Q 005123 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--N 219 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~------~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~--~ 219 (713)
++..+. .+++|+||+.||.|++|+..... ....+..|.+.|+.++...+++.|++++.|-+|++|+.... -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 333443 56789999999999999965432 35678889999999999999999999999999999998877 5
Q ss_pred eeeeeccCCCCeeEEEE-ecCCCEEEEEECCCeEEEEEcCCCee--EE--------EEc-cCCCceEEEEEcCCCCEEEE
Q 005123 220 VKANKSAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQE--ER--------SLT-GHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~f-s~dg~~Las~s~Dg~I~iwDl~~~~~--~~--------~l~-~h~~~V~sl~~spdg~~L~s 287 (713)
+..++..|.+.|.||++ ..+...+|+|+.|+.|.+||++++.. +. .+. ++...|.+++.++.+..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 67778899999999999 77888999999999999999987632 21 222 67789999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~ 367 (713)
|+.++.|++||.++++.+.++.+|...|.++..+.||+.++++++||+|++||+...+++.++..|...|+++..++ +-
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 78
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc--CCCcEEEEeCCcEEEEecCC
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH--PIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~laS~Dg~v~iWd~~~ 427 (713)
..+++|+.||.|..-|+++......+. ..+..|..+..+ .+..++++.|+.|+-|....
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 899999999999999998864443333 235567777766 45567888999999997643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=254.63 Aligned_cols=242 Identities=28% Similarity=0.403 Sum_probs=224.3
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-----Cc
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-----NN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-----~~ 219 (713)
+-+.|..|.|.++++++|..+|.+.|||+.+...+.++..|++.|.+++.++|++.+++|+.|.+|++||... +.
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999998642 11
Q ss_pred eee-------eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 220 VKA-------NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 220 ~~~-------~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
..+ ..-...+.|.|+++|||+++|+++-.|.+|+||-+++.+....+.+|.-+|.|+.+++|++++++|+.|.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 111 1123467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
+|+||-++-|.|-+.+.+|...|.++.|-|+...+++++.|+.|+-||-...+.+..+.+|...|++++.++ ++.++++
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs 651 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVS 651 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEEcCCC
Q 005123 373 GSLDGSIFHWLVGHE 387 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~ 387 (713)
+|.|.+|++|.....
T Consensus 652 ~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 652 SSHDKSIRLWERTDE 666 (888)
T ss_pred ccCCceeEeeeccCc
Confidence 999999999987543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=229.56 Aligned_cols=268 Identities=20% Similarity=0.273 Sum_probs=219.4
Q ss_pred CCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCC-ce-EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 142 KNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-NF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 142 ~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~-~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.-.+.|.+|+||| ...+|++++.|++||+|+++.. .. -+....|.+.|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 5566668999999999998873 32 2445678999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCC--EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~--~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
... .+..|...|..+.|-+... .|++||.|++|+.||.+....+.++. ..+.|.++..- ..+++++..+..|.+
T Consensus 105 Q~~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVS-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred Cee-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 554 5578999999999987665 79999999999999999988888876 44567777665 568899999999999
Q ss_pred EECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eeEEEeecCCC---------CeEEEEEe
Q 005123 297 WDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRK---------DVTALAWH 363 (713)
Q Consensus 297 wDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--~~l~~~~~h~~---------~V~sl~fs 363 (713)
|+++++....+. ...+-.+.||+...|....+.|+-+|.+.|..++.. +.-.+|+.|.. .|.+|+|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 999875433221 123456899999888888899999999999999876 55567777763 47889999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
| .-..|+|++.||++.+||.+...++. ....|...|++.+|+.+|.+++-
T Consensus 261 P-~hgtlvTaGsDGtf~FWDkdar~kLk-~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 261 P-VHGTLVTAGSDGTFSFWDKDARTKLK-TSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred c-ccceEEEecCCceEEEecchhhhhhh-ccCcCCCccceeEecCCCCEEEE
Confidence 9 66789999999999999986655443 33458899999999999988763
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=253.18 Aligned_cols=241 Identities=18% Similarity=0.297 Sum_probs=189.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeccCCCCeeEEEEec-CCCEEEEEECCCeEE
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVK 253 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~-------------~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~ 253 (713)
.|+....+.|+..+++++.+.....|+...+..+ ..+.+|.+.|++++|++ ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444444445555566655555556654333211 23568999999999999 888999999999999
Q ss_pred EEEcCCC-------eeEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCC
Q 005123 254 VWDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 254 iwDl~~~-------~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~ 325 (713)
|||+.+. +.+..+.+|...|.+|+|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 9999764 2466788999999999999975 6999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEeecCCCC-eEEEEEeCCCCCEEEEEE----CCCcEEEEEcCCCCceEEEeccc-CC
Q 005123 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVSGS----LDGSIFHWLVGHETPQVEIHNVH-DN 399 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~-V~sl~fsp~~~~~lasgs----~DG~I~Iwd~~~~~~~~~~~~~h-~~ 399 (713)
+|++++.|++|+|||+++++.+.++..|... +..+.|.+ +...|++++ .|+.|++||+++..........+ ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 9999999999999999999999999888764 45778888 455565543 47899999998766555544333 34
Q ss_pred CeEEEEEcCCCcEE--EE-eCCcEEEEecCCCC
Q 005123 400 TVWDLAWHPIGYLL--CS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 400 ~V~~l~~spdg~~l--aS-~Dg~v~iWd~~~~~ 429 (713)
.+....|++++.++ ++ .|+.|++|++....
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 56667889998655 34 59999999997644
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=223.72 Aligned_cols=264 Identities=21% Similarity=0.309 Sum_probs=222.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
++.|++|.|++.++.|++++.||++++||.....+...+. |..++.+++|.. ...+++|+.||.|+++|+++++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 5789999999999999999999999999998875555444 899999999984 6789999999999999999987655
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
+-.|...|.||.++.....+++|++|++|++||.+....+..+. ....|.++... ++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 45799999999999999999999999999999998755555554 44589998887 7899999999999999999866
Q ss_pred eEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eeEEEeecCCC---------CeEEEEEeCCCCC
Q 005123 304 ELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRGHRK---------DVTALAWHPFHEE 368 (713)
Q Consensus 304 ~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----~~l~~~~~h~~---------~V~sl~fsp~~~~ 368 (713)
..... ...+-.+.||++-|++.=+++++-||.|.+=.++.. +....|+.|.. +|.+|+|+| --.
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccc
Confidence 54422 234567899999998888999999999998777765 45567777753 589999999 577
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
.||||+.||.|.+||+...+.+..+.. .+..|.+++|+.||..||.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAI 291 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEE
Confidence 899999999999999988776666554 3677999999999988875
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=236.16 Aligned_cols=242 Identities=19% Similarity=0.309 Sum_probs=222.2
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
+--+.+.|.|++||.|...||+|+.||.|+||.+.++.+++.+. .|...|+|+.|+.|+..+++++.|-+++|--+.++
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 44578899999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--CCCceEEEEEcC-CCCEEEEEeCCCcEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHP-TKSLLVSGGKDSLVK 295 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~~sp-dg~~L~sgs~Dg~I~ 295 (713)
++++.+++|.+.|+...|+.||.++++++.||+|+||+..+.+++.+++. ....|+++...| +-..+++|...++|+
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999888764 456788888887 446888999999999
Q ss_pred EEECCCCceEEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~~---h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|.++. |..++++.. ..+...+.++||.|.|+++.++|+.++.|.+.+++.-+++..|...|..++-+| ..++||+
T Consensus 419 imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 419 IMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred EEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhh
Confidence 99986 777777743 345567788999999999999999999999999999999999999999999999 8999999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
-++||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999994
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=224.44 Aligned_cols=247 Identities=14% Similarity=0.232 Sum_probs=211.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-----CCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-----GGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-----DG~I~v 212 (713)
-++.+|++.|+|++.+.+.++|++|+.|.+++|||+++++.+..++. ...|..+.|+.+|++++.+.+ .+.|.+
T Consensus 46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 46889999999999999999999999999999999999999998874 788999999999999887754 377999
Q ss_pred EEcC-------CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCE
Q 005123 213 WQNN-------MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 213 wdl~-------~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~ 284 (713)
+|++ ..+....+..+.+.++.+.|.+-+++|++|.+||.|.+||+++++. +.....|...|+++.+++|..+
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence 9987 3444666677889999999999999999999999999999999754 5555779999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe--------------EEEEECCCCeeEEEe
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI--------------IKLYDIRAMKELESF 350 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~--------------I~IwDl~t~~~l~~~ 350 (713)
+++++.|.+-++||.++.+.++++. ...+|++.+++|..++++.|+.... .++|++-..+++..+
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred EEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 9999999999999999999998887 5778999999997777776653221 223333334556778
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
++|-++|++++|+| ++...++|++||.|++..++..
T Consensus 284 kGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 284 KGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccccCcceeEECC-CCcccccCCCCceEEEEEeccc
Confidence 89999999999999 8999999999999999877544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=222.70 Aligned_cols=266 Identities=19% Similarity=0.287 Sum_probs=220.2
Q ss_pred EEEEEECCCcEEEEeCCCC------------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 158 RLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|++|++...|.=+++.-. ..+..+..|.+.|++++. ++.++++|+.|-+|+|||+........+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3677777766666654321 124456789999999999 58999999999999999999999888899
Q ss_pred cCCCCeeEEEEecCCC--EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 226 AHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~--~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
.|.+.|+++.|...-. .|++|++||.|.+||....+.+..+++|...|+.|+++|.+++.++.+.|+.+++||+-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999988765 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.-..+. ....-+.|.|++.|.+++++..++ |-||.+.+.+....+.. ...+.++.|. ++..|++|.+|+.|.+||
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKD 235 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEec
Confidence 665554 233345599999999999888764 99999988776655543 3567788875 588999999999999999
Q ss_pred cCCCCceEEEecccCCCeEEEEEc--CCCcEEE--EeCCcEEEEecCCCCCc
Q 005123 384 VGHETPQVEIHNVHDNTVWDLAWH--PIGYLLC--SNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~la--S~Dg~v~iWd~~~~~~~ 431 (713)
.++. .....+.+|..+|.++.+- +++.+|+ |.||.|+|||++.....
T Consensus 236 ~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 236 TDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9774 4566677899999999854 4555664 59999999999876443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=258.26 Aligned_cols=249 Identities=22% Similarity=0.350 Sum_probs=219.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC------------------CceEEEEeccCCCEEEEEEccCCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMVWSHNDN 199 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t------------------~~~~~~l~~h~~~V~sl~~spdg~ 199 (713)
.....|.+.|+|+.|++||++||+|+.|+.|.||+... .+.+.++.+|+..|.+++|+|++.
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 35678999999999999999999999999999998662 246778899999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC------Cce
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG------WDV 273 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~------~~V 273 (713)
+|++++.|++|.|||..+.+.+..+++|...|..+.|.|-|++||+-++|++|+||++.+....+.+.++. ..+
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999988877777776543 357
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCceEEEEccCCCCeEEEEEcCC-----CC------------EEEEEEC
Q 005123 274 KSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GN------------WVLTASK 332 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd-----g~------------~Latgs~ 332 (713)
..+.|+|||.+|++... -.++.|.+-.+.+.-..+.+|.+.+.+++|+|. .+ .+|+|+.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 89999999999998743 245889998888888899999999999999972 12 5779999
Q ss_pred CCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 333 DQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|++|.||.....+.+..+. .....|.+++|++ ++..|+++|.||+|.++.++.+
T Consensus 303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence 9999999998877765543 3567899999999 8999999999999999998654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=237.83 Aligned_cols=244 Identities=25% Similarity=0.465 Sum_probs=204.9
Q ss_pred eccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc----------eeeeeccCCCCeeEEEEecCC-CEEEEEECCC
Q 005123 183 QAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNN----------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDT 250 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~----------~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg 250 (713)
..|.+.|+.+.+-|.. +++++.+..+.|.|||..... ....+.+|...-.+|+|+... -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4589999999998876 456677888999999976432 122567888878889998854 5689999999
Q ss_pred eEEEEEcCCCe-------eEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceEEEEccCCCCeEEEEE
Q 005123 251 TVKVWDFARCQ-------EERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKW 320 (713)
Q Consensus 251 ~I~iwDl~~~~-------~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~--t~~~~~~~~~h~~~I~si~f 320 (713)
+|++||+.... ....+.+|...|..++|++ +..+|++++.|+.+.|||+| +.+......+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999996432 2456788999999999999 56689999999999999999 55666777889999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC----------
Q 005123 321 NQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---------- 388 (713)
Q Consensus 321 sp-dg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---------- 388 (713)
+| ++..||+|+.|++|++||+|+.+ ++.++.+|...|..|.|+|....+||+++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 67788899999999999999864 5789999999999999999889999999999999999995432
Q ss_pred ---ceEEEecccCCCeEEEEEcCCCcE-EEE--eCCcEEEEecC
Q 005123 389 ---PQVEIHNVHDNTVWDLAWHPIGYL-LCS--NDHTTKFWCRN 426 (713)
Q Consensus 389 ---~~~~~~~~h~~~V~~l~~spdg~~-laS--~Dg~v~iWd~~ 426 (713)
.++.+..+|...|.++.|+|+.-+ +|| +|+.+.||+..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234677889999999999999844 455 99999999875
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=235.62 Aligned_cols=252 Identities=23% Similarity=0.452 Sum_probs=211.6
Q ss_pred eEEEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCc----------eEEEEeccCCCEEEEEEccCC-CEE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFN----------FEMILQAHDHAIRSMVWSHND-NWM 201 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~----------~~~~l~~h~~~V~sl~~spdg-~~L 201 (713)
++.....-.|.+.|+.+.+-|.. ..||+.+..+.|+|||..+.. ...++.+|.+.-.+++|+... -+|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 44444556799999999999976 556677888999999966432 223788999888899999865 478
Q ss_pred EEEeCCCcEEEEEcCCCc-------eeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcC--CCeeEEEEccCCC
Q 005123 202 VSGDDGGAIKYWQNNMNN-------VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGW 271 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~-------~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~--~~~~~~~l~~h~~ 271 (713)
++++.|+.|++||+.... ....+.+|...|.+++|++ +..+|+++++|+.+.|||++ +.+......+|..
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 899999999999987543 3456788999999999998 45678999999999999999 5566677788999
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC----
Q 005123 272 DVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM---- 344 (713)
Q Consensus 272 ~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~---- 344 (713)
.|+|++|+| ++.+||+|+.|++|++||+|+ .+++.++.+|...|.+|.|||+ ...||+++.|+.+.|||+...
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999999999 667889999999999999998 4578889999999999999995 577889999999999999642
Q ss_pred ----------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 345 ----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 345 ----------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+.+..-.+|...|..+.|+|.....|++.++|+.+.||...
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466678999999999999878889999999999999974
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=243.29 Aligned_cols=324 Identities=19% Similarity=0.238 Sum_probs=244.5
Q ss_pred ccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEEEC
Q 005123 85 TSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQ 164 (713)
Q Consensus 85 ~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~ 164 (713)
.+.+.....+-+|++....+........++...++.+...+ .+-|...--|+ |.+ .++||++
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--------------~nv~~~~~acl---p~~-cF~TCSs 400 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--------------CNVHSPTAACL---PRG-CFTTCSS 400 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--------------ccccCcccccC---Ccc-ceeEecC
Confidence 34455667889998765554433333333334444332211 01122221221 222 4899999
Q ss_pred CCcEEEEeCCCCceEEE-------------------------------------EeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 165 SGEFTLWNGQSFNFEMI-------------------------------------LQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~-------------------------------------l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
|++|+|||++.+....+ .......|++|+.+|++.+|++|+.-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 99999999775211000 01123468999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCC-
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTK- 282 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg- 282 (713)
|.|+||++...+....+..|+..|.||.|+. ..++|++++.|+.|.|||+... ..+.++.+|...|++|.|.-.|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 9999999999999999999999999999986 3477999999999999999654 5577889999999999998876
Q ss_pred -CEEEEEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---C
Q 005123 283 -SLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---H 353 (713)
Q Consensus 283 -~~L~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h 353 (713)
..+++++.|..|.+--.+.......+. ..+..+..++..|+.+++++++.|+.|+|||+.+++.++.|++ |
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence 678899998877544333211122222 1245689999999999999999999999999999999999975 5
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCCC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRP 428 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~~ 428 (713)
++....+...| .+.||++.+.|.+|.|+|+.+++.... ..+|...|+.+.|.+|.+.|. +.|++|.||.+...
T Consensus 641 eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~-m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 641 EGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQ-MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhh-hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 67788999999 899999999999999999988775544 458999999999999986654 59999999998653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=230.50 Aligned_cols=248 Identities=17% Similarity=0.281 Sum_probs=223.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
..|+++...+..+.+++|+.|..+.++|..++..+..+.+|...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888887789999999999999999999999999999999999999999999999999999999999887788888
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
..|...|+.+..++.|+||++++.|+++.+.|+++++.+..... ..-.+++++|+|||.+|.+|+.|+.|+|||+++.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998877654 3346899999999999999999999999999999
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
..+..|.+|.+.|.+|+|+. ++.+||++++|+.|++||+++......+.......|.+++|+..|.+++.....|+||-
T Consensus 380 ~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 99999999999999999998 89999999999999999998877665555544557999999999999988788888887
Q ss_pred cCCCCCccccc
Q 005123 425 RNRPGDTARDK 435 (713)
Q Consensus 425 ~~~~~~~~~~~ 435 (713)
..+.....+..
T Consensus 459 ~~k~~k~W~~~ 469 (506)
T KOG0289|consen 459 CKKKTKSWTEI 469 (506)
T ss_pred Eecccccceee
Confidence 76555544443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=235.46 Aligned_cols=241 Identities=19% Similarity=0.318 Sum_probs=214.1
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+|.+..+.|++++|..+++++++++.|+.+++|++.......++.+|.+.|+++.|......+++|+.|.+|++||+.
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence 34677888899999999999999999999999999999999999999999999999999877779999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
...+.+++ ...+.+.+|+.+ ...++++..|++|++||+++.........+. .|+++..+.++..|++++.|.++.+
T Consensus 292 k~~C~kt~-l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 292 KAYCSKTV-LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred hhheeccc-cccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceee
Confidence 87777665 345566777765 5678899999999999999998888887655 9999999999999999999999999
Q ss_pred EECCCCceEEEEccC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC--eEEEEEeCCCCCEE
Q 005123 297 WDAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEYF 370 (713)
Q Consensus 297 wDl~t~~~~~~~~~h----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~--V~sl~fsp~~~~~l 370 (713)
+|+++.+....+... ....+.+.|||++.|+++|+.||.|+||++.++++...+...... |++++|++ .+..+
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~L 446 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGL 446 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchh
Confidence 999998877776532 234788999999999999999999999999999998888766554 99999999 89999
Q ss_pred EEEECCCcEEEE
Q 005123 371 VSGSLDGSIFHW 382 (713)
Q Consensus 371 asgs~DG~I~Iw 382 (713)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=245.63 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=252.7
Q ss_pred eccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEeeCCCCCceEEEEEccCCCEEEEEE
Q 005123 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGS 163 (713)
Q Consensus 84 ~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs 163 (713)
|.-+-.|++.||+|+...-..... .. ...++..|.+.|+.++...+++.|++++
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s---------------------~~-----~~asme~HsDWVNDiiL~~~~~tlIS~S 92 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPS---------------------TP-----YIASMEHHSDWVNDIILCGNGKTLISAS 92 (735)
T ss_pred eEEecCCCceEEEeccccccCCcc---------------------cc-----hhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence 555667889999997653210000 00 1224678999999999999999999999
Q ss_pred CCCcEEEEeCCCC--ceEEEEeccCCCEEEEEE-ccCCCEEEEEeCCCcEEEEEcCCCc--eee--------ee-ccCCC
Q 005123 164 QSGEFTLWNGQSF--NFEMILQAHDHAIRSMVW-SHNDNWMVSGDDGGAIKYWQNNMNN--VKA--------NK-SAHKE 229 (713)
Q Consensus 164 ~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~-spdg~~L~sgs~DG~I~vwdl~~~~--~~~--------~~-~~~~~ 229 (713)
.|-+|++|+.... -+..++..|++.|.|+++ ..+..++|+|+-|+.|.|||++++. .+. .+ .++..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 9999999998877 567788999999999999 7788899999999999999999762 221 12 26788
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 230 SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.|.+++.++.+..|++|+.++.|++||.++++.+..+++|...|.++..+.||+.+++++.||+|++||+...+++.++.
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.|...|+++..+++-.+|++|+.||.|+.=|+++......+...+..|..+..+. +.+-+-+++.|+.|+-|...-...
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~-~~~~~WvtTtds~I~rW~~~~~~~ 331 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE-HDNSVWVTTTDSSIKRWKLEPDIA 331 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc-ccCCceeeeccccceecCCccccc
Confidence 9999999999999999999999999999999998544444444567788888776 344457778899999996632110
Q ss_pred eE------EEecc-----------c------CCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 390 QV------EIHNV-----------H------DNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 390 ~~------~~~~~-----------h------~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
+. ..... + ...|...+...|.+.+.+ .+|.+.+||+-+.
T Consensus 332 l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 332 LSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred cccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 00 00000 0 113344445566677776 7799999998543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=244.56 Aligned_cols=265 Identities=19% Similarity=0.380 Sum_probs=228.4
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC-ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
-.|+...+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++. ++++|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368889999999999999999999999999997665 444444447778888776 56699999999999999999888
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
.-..+....-.+++++|+-+|+++|.|++|-.|++.++.+...++.+++|...|.+|.|+|++++||+.+.||+|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcc--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCE
Q 005123 300 KSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (713)
Q Consensus 300 ~t~~~~~~~~~--------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~ 369 (713)
.++.+..++.+ ....+..++|+|++..|++.+.|+.|++|+..+++....++. +...++.+.|+| ++.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcE
Confidence 99887766542 134467789999988888889999999999999998877754 345599999999 8999
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 413 (713)
||+++.||.|.|||+++-.. ......|++++|.++...+
T Consensus 247 iAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCee
Confidence 99999999999999977221 2235689999999988544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=242.64 Aligned_cols=223 Identities=20% Similarity=0.340 Sum_probs=178.4
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCe--------eEEEEccCCCceE
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ--------EERSLTGHGWDVK 274 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~--------~~~~l~~h~~~V~ 274 (713)
|+.++.|++|+......+..+.+|...|.+++|+++ +.+|++|+.|++|+|||+.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998887778888999999999999996 7899999999999999997532 2346778999999
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 275 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 275 sl~~spdg~~-L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
+|+|+|++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5788999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEE-----EEeCCCCCEEEEEECCC----cEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEE-E-eCCcE
Q 005123 354 RKDVTAL-----AWHPFHEEYFVSGSLDG----SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLC-S-NDHTT 420 (713)
Q Consensus 354 ~~~V~sl-----~fsp~~~~~lasgs~DG----~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~la-S-~Dg~v 420 (713)
.+.+.+. .|++ ++.+|++++.|+ .|+|||++.....+..... +.+.+.......++.+++ + .|++|
T Consensus 209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 8765433 3446 677888877764 7999999865444443322 223333333344565553 3 89999
Q ss_pred EEEecCCC
Q 005123 421 KFWCRNRP 428 (713)
Q Consensus 421 ~iWd~~~~ 428 (713)
++|++...
T Consensus 288 r~~e~~~~ 295 (568)
T PTZ00420 288 RYYQHSLG 295 (568)
T ss_pred EEEEccCC
Confidence 99999653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=212.20 Aligned_cols=234 Identities=16% Similarity=0.332 Sum_probs=212.8
Q ss_pred eeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
...+|.+.|-.++|++. .+.|++++.|.+|++||...+++...+....+.| .++|+|+|+++++++.|..|.+.|.++
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDART 137 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecc
Confidence 45689999999999985 5789999999999999999999998887655555 689999999999999999999999998
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+..... .....+..++|+.+++.++.....|+|.|.....-+.+..+++|.....||+|+|+|++||+|+.|..+.+|
T Consensus 138 ~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 138 YKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred cceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 8776654 455678889999888888888888999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
|+..--+++.+..++-.|..|+||.||++||++++|..|-|=++.+|..+..+. +.+....++|+| ...+||-+++|
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 999999999999999999999999999999999999999999999999999988 788899999999 78888877765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-24 Score=201.06 Aligned_cols=252 Identities=24% Similarity=0.393 Sum_probs=211.0
Q ss_pred eeeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--c---eEEEEeccCCCEEEEEEccC----CCEEE
Q 005123 132 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--N---FEMILQAHDHAIRSMVWSHN----DNWMV 202 (713)
Q Consensus 132 ~~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~---~~~~l~~h~~~V~sl~~spd----g~~L~ 202 (713)
....+.+..+.|+++|.|++|+++|.+|++|+.|.+|++.-.+.. + ...++.-|++.|..++|..+ +.+|+
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 344556677889999999999999999999999999998754432 2 23567789999999999654 35666
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------CCCceE
Q 005123 203 SGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVK 274 (713)
Q Consensus 203 sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~ 274 (713)
+++ .|..|++-|...+.-...+.+|.+.|.++ ++-++-.|++++.|.+|++||++-..++.++.. ..+.|.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 554 45667777888888888899999999876 334788999999999999999998877777642 235799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eeEEEe
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESF 350 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----~~l~~~ 350 (713)
++++.|.|++|++|-.|....+||++.++.+..+..|...|.|+.|||...|+++++.|..|++-|+... -.+...
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998631 123455
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..|+..+..+.|++ .+--|++.+.|.++.+|.+.
T Consensus 316 ~ehkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 67999999999999 67778899999999999763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=220.98 Aligned_cols=271 Identities=10% Similarity=0.114 Sum_probs=206.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
++.+++++.|+.|++||+.+++.+..+..+. .+.+++|+++++.+ ++++.++.|++||+.+++....+..+ ..+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 3578899999999999999998888887654 46789999999877 46678899999999998877665543 345788
Q ss_pred EEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEccCC
Q 005123 235 SFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 235 ~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-~I~IwDl~t~~~~~~~~~h~ 312 (713)
+|+++++.++++ +.|+.|++||+.+.+.+..+. ....+.+++|+++++++++++.++ .+.+||.++++.+..+. ..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 999999877655 568999999999887776665 234578899999999999988775 46778998887765543 23
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCC-------CCeEEEEEeCCCCCE-EEEEECCCcEEEEE
Q 005123 313 NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHEEY-FVSGSLDGSIFHWL 383 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~-------~~V~sl~fsp~~~~~-lasgs~DG~I~Iwd 383 (713)
..+.+++|++++++|++++ .++.|++||+++++.+..+..+. .....++|++ ++++ +++.+.++.|.+||
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEE
Confidence 4567899999999886554 68999999999988777664321 1235688999 5555 45556677899999
Q ss_pred cCCCCceEEEecccCCCeEEEEEcCCCcEEEE---eCCcEEEEecCCCCCccc
Q 005123 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS---NDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS---~Dg~v~iWd~~~~~~~~~ 433 (713)
+++.+....+ .+...+++++|++++.+|++ .++.|+|||++......+
T Consensus 236 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 236 AKTYEVLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CCCCcEEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9765533322 23457999999999977653 589999999976544333
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=248.38 Aligned_cols=279 Identities=20% Similarity=0.373 Sum_probs=223.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEec---cCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQA---HDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~---h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~ 216 (713)
..+++|+.+++-..|+.++.. .++||.+... ++...+.. ....+..|+|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 446677777888888888755 5777765432 12222211 122355677864 45899999999999999998
Q ss_pred C---CceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCC
Q 005123 217 M---NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKD 291 (713)
Q Consensus 217 ~---~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~D 291 (713)
. .+.+..+..|...|++++|+... .+|++|+.||+|++||++..+...++.+....|++|.|+| .+..|+++.+.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 56667788999999999999865 6789999999999999999999999988889999999999 67899999999
Q ss_pred CcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCC
Q 005123 292 SLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 292 g~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|.|.+||+|.. ++...+.+|.+.|.|+.|+|++.+||+|+.|+.|+|||..+.+.. .++. ....|.+|+|-|....
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccc
Confidence 99999999974 567788899999999999999999999999999999999865443 3332 4578999999997777
Q ss_pred EEEEEEC--CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeCCcEEEEec
Q 005123 369 YFVSGSL--DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSNDHTTKFWCR 425 (713)
Q Consensus 369 ~lasgs~--DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~Dg~v~iWd~ 425 (713)
.|++++. |-.|+|||++........+..|...++.++|.... .+.|+.|++|..-.+
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 8888765 77899999999998889999999999999998722 222446666554433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=242.12 Aligned_cols=247 Identities=21% Similarity=0.383 Sum_probs=215.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC---CCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd---g~~L~sgs~DG~I~vwdl 215 (713)
++-+-+..|+|++.+|||++||+|..-|+|+|||+.+.+....+..|+..|.|+.|+.. .++|+++++|..|.|||+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 34456778999999999999999999999999999999999999999999999999863 478999999999999998
Q ss_pred CCC-ceeeeeccCCCCeeEEEEecCC--CEEEEEECCCeEEEEEcCCCeeEEEEcc-----CCCceEEEEEcCCCCEEEE
Q 005123 216 NMN-NVKANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 216 ~~~-~~~~~~~~~~~~V~~l~fs~dg--~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----h~~~V~sl~~spdg~~L~s 287 (713)
..+ .++.++.+|...|+++.|..++ ..+++|+.|+.|.+--..+......+.. ....+.++++.|..+++++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 755 5677888999999999998877 7789999998776543322111122221 2356889999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~---h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
++.|.+|+|||+.+++.++.|++ |++....+...|.|.||++.+.|++|.++|..+++++....+|...|+.+.|.+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 99999999999999999999975 566788899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCC
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+.+.|++.+.||.|.||.+..
T Consensus 694 -DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 -DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -cchhheeecCCceEEEEECch
Confidence 889999999999999999854
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=233.19 Aligned_cols=284 Identities=20% Similarity=0.310 Sum_probs=230.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCE--EEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW--MVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~--L~sgs~DG~I~vwd 214 (713)
...+++|++.|+||...+.|.+|++|+.||+|+||.+.++.+++.+.. .+.|.||+|+|.++. ||++- +..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cCceEEeC
Confidence 345789999999999999999999999999999999999999998874 679999999997753 33333 23343333
Q ss_pred cCCC-------------------------------------ceeeeeccCCCCeeEEEEecCCCEEEEEECC---CeEEE
Q 005123 215 NNMN-------------------------------------NVKANKSAHKESVRDLSFCRTDLKFCSCSDD---TTVKV 254 (713)
Q Consensus 215 l~~~-------------------------------------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D---g~I~i 254 (713)
..-+ .-++....|...|+.+.|+..|.||++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1111 0122334577889999999999999987654 57999
Q ss_pred EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
.++.......-|....+.|.++.|+|...+|++++. ..|+|||+...+.++++.....+|.++++++.|..|++++.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 999887766667667788999999999999998886 6799999999888888887888999999999999999999999
Q ss_pred eEEEEECCC-CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC--------CceEEEecccCCC----e
Q 005123 335 IIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--------TPQVEIHNVHDNT----V 401 (713)
Q Consensus 335 ~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~--------~~~~~~~~~h~~~----V 401 (713)
.+..||+.- .+..++++.|...|++++|++ .-.+|++|+.||++.||.-.-. -..++.+.+|... |
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence 999999974 456788899999999999999 7889999999999999854211 1224556677654 9
Q ss_pred EEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 402 WDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 402 ~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
.++.|+|..-+|.+ .|++|++|.
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EeecccCCCceEEecCCCceEEeeC
Confidence 99999999977654 999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=206.74 Aligned_cols=255 Identities=16% Similarity=0.241 Sum_probs=212.2
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKV 254 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~i 254 (713)
+..+.+......|+++.|+.+|.+|++++.|.+|+|||..+++...++..++..|..++|....+.++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 444556666789999999999999999999999999999999999999999999999999888888877776 889999
Q ss_pred EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
.++.+.+.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+..... ..++|.|+|-++|++....
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCC
Confidence 99999999999999999999999999999999999999999999998888776654333 4478999999999999888
Q ss_pred eEEEEECCCCe--eEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC---CeEEEEE
Q 005123 335 IIKLYDIRAMK--ELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN---TVWDLAW 406 (713)
Q Consensus 335 ~I~IwDl~t~~--~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~---~V~~l~~ 406 (713)
.|+|||+|+.. ...+|. ......+.|.||+ ++++|+.++..+.+++.|.-++... ..+..+.. .-.+.+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~-~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVK-STFSGYPNAGNLPLSATF 240 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEe-eeEeeccCCCCcceeEEE
Confidence 99999999752 333443 3356789999999 8899999999999999998777633 33333332 2257789
Q ss_pred cCCCcEEEE--eCCcEEEEecCCCCCccccc
Q 005123 407 HPIGYLLCS--NDHTTKFWCRNRPGDTARDK 435 (713)
Q Consensus 407 spdg~~laS--~Dg~v~iWd~~~~~~~~~~~ 435 (713)
+||+.++.+ +||+|.+|+++......+..
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 999976643 88999999997766655443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=210.37 Aligned_cols=249 Identities=21% Similarity=0.350 Sum_probs=208.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---ceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~vw 213 (713)
.-..|++.|..+...--|++||||++|++|+|+..... +++.++.+|.+.|..++|.. -|++|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999989999999999999999997753 56889999999999999987 78999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCC---eeEEEEccCCCceEEEEEcCC---C-
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPT---K- 282 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~~~V~sl~~spd---g- 282 (713)
.-+.+. .......|...|++++|.+. |-.|++++.||+|.|.++++. ...+....|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 988774 33445679999999999885 467899999999999998654 234556789999999999985 4
Q ss_pred ----------CEEEEEeCCCcEEEEECCCC--ceEEEEccCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECCCCe-
Q 005123 283 ----------SLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQN----GNWVLTASKDQIIKLYDIRAMK- 345 (713)
Q Consensus 283 ----------~~L~sgs~Dg~I~IwDl~t~--~~~~~~~~h~~~I~si~fspd----g~~Latgs~Dg~I~IwDl~t~~- 345 (713)
+.|++|+.|+.|+||+..++ +..+++.+|.+.|+.++|.|. ..+||+++.||+|.||..+...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 57999999999999998875 344568899999999999995 3679999999999999876321
Q ss_pred --eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 --ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 --~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
....++.....+..+.||. .+++|++++.|+.|.+|.-+...
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred cccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCC
Confidence 1223344567899999999 89999999999999999865443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=223.39 Aligned_cols=255 Identities=22% Similarity=0.324 Sum_probs=221.7
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----ee-------------e-ccCCCCeeEEEEecCC
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK----AN-------------K-SAHKESVRDLSFCRTD 240 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~----~~-------------~-~~~~~~V~~l~fs~dg 240 (713)
...+..|...|.++++++|++++++++.|++|.-|++.+++.. .. - +.|...|.++++++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4566789999999999999999999999999999998877532 11 0 2677889999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEE
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~f 320 (713)
++|++++.|..|.|||.++.+.+..+.+|.+.|.+++|-..-..|++++.|..|++|+++....+.++.+|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988888999999999999999998889999999999999998
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC--
Q 005123 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-- 398 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-- 398 (713)
..-++.+-+|+.|+++++|++. .+....|.++.+.+-|++|- ++..|++||+||.|.+|++-+.+.+.....+|.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 8888888888899999999995 44455688899999999997 578899999999999999988877766655553
Q ss_pred ---------CCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCcccccc
Q 005123 399 ---------NTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTARDKF 436 (713)
Q Consensus 399 ---------~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~~~~~ 436 (713)
..|++|+..+...++|+ .+|+||+|.++..-......+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee
Confidence 27899999999988886 899999999977655444333
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=243.54 Aligned_cols=250 Identities=24% Similarity=0.492 Sum_probs=224.0
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
+++....+-.++|||.. .+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|...|.+|.|+
T Consensus 6 ~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 44555556677888865 345688888898887778999999999999999988877777789999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
.+..+|++|+.+|+|++||++..+.++++.+|...+.+|.|+|-+.+++.++.|+.+++||++...+...+.+|...|.+
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
+.|+|+|+|++.+++|.+++|||+..++.+.+|..|...|.++.|++ .+.++++|+.|++|++||+++-.. +......
T Consensus 160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~-I~s~~~~ 237 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEV-ISSGKPE 237 (825)
T ss_pred EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEE-eeccCCc
Confidence 99999999999999999999999999999999999999999999999 889999999999999999975443 3333334
Q ss_pred CCCeEEEEEcCCCcEEEE
Q 005123 398 DNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS 415 (713)
...|.+++|++++..+.+
T Consensus 238 ~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 238 TDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred cCCceeeeecCCceeeec
Confidence 678999999999987765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=215.26 Aligned_cols=263 Identities=21% Similarity=0.358 Sum_probs=227.6
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
.|++.-.+++++ ..+++.+.+|.+.|..++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 355555555432 34567788999999999988777888899999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcC------C----------------------------------CeeEEEEccCCCceEEEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFA------R----------------------------------CQEERSLTGHGWDVKSVD 277 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~------~----------------------------------~~~~~~l~~h~~~V~sl~ 277 (713)
+.+.++++++.|++..||... . ...+..+++|...|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 999999999999999999620 0 012345678899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeecCCCC
Q 005123 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD 356 (713)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~ 356 (713)
|...++.+++++.|.+..+||+++++.+..+.+|+...+.++-+|..+++++.+.|-+.++||++. -..+..|.+|...
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999984 3457889999999
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
|+++.|.- +..+++|++|.+|+|||+++-...+..+. .++.++.++++..+.+|+- ++..|++||++...
T Consensus 360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 99999986 56799999999999999987766665554 3678999999999989987 78899999997544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-25 Score=216.56 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=206.7
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC------------C------ceeeeeccCCCCeeEEEEecCC
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM------------N------NVKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~------------~------~~~~~~~~~~~~V~~l~fs~dg 240 (713)
...+..|+..+++.+|++||.++++|+.|..|+|+|++. + -+++++..|.+.|+++.|+|.+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345778999999999999999999999999999999761 1 2567788899999999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE---ccCCCCe
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMV 315 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~---~~h~~~I 315 (713)
..|++++.|++|++||+.+-...+.++ .....|.+|+|+|.|.+|++|.+..++++||+++.++...- ..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999997644333222 24568999999999999999999999999999998876654 3588899
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+++.+|+.+++.++++.||.|+|||--+.+++.++. .|. ..|++..|.. ++++|++.+.|..|++|.+.++..+...
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEE
Confidence 999999999999999999999999999999998885 455 5799999998 8999999999999999999988876665
Q ss_pred ecccC----CCeEEEEEcCCCcEEEE---eCCcEEEEecCCCCC
Q 005123 394 HNVHD----NTVWDLAWHPIGYLLCS---NDHTTKFWCRNRPGD 430 (713)
Q Consensus 394 ~~~h~----~~V~~l~~spdg~~laS---~Dg~v~iWd~~~~~~ 430 (713)
..+.. .--+...|+....++.. ..+.+.-||-.....
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 54311 12234456666655554 556777887654443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=210.38 Aligned_cols=250 Identities=21% Similarity=0.385 Sum_probs=207.2
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC---ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEE
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwD 256 (713)
-..|++.|.++...-.|++|++++.|++|+|+.++.+ +.+.++.+|.+.|..++|.. -|.+||+|+.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3568888988888888999999999999999998865 46788899999999999986 899999999999999999
Q ss_pred cCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCeEEEEEcCC---C--
Q 005123 257 FARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQN---G-- 324 (713)
Q Consensus 257 l~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I~si~fspd---g-- 324 (713)
-++++ .......|...|++|+|.|. |-.|++++.||+|.|++.++. ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 87763 24456679999999999984 568999999999999988764 223445678899999999985 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCCe--eEEEeecCCCCeEEEEEeCCC---CCEEEEEECCCcEEEEEcCCCCce
Q 005123 325 ---------NWVLTASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 325 ---------~~Latgs~Dg~I~IwDl~t~~--~l~~~~~h~~~V~sl~fsp~~---~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
+.|++|+.|..|+||+..+++ .-+++.+|.+.|+.++|.|.. ..+||+++.||+|.||..+.+...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 669999999999999998753 335589999999999999943 358999999999999988744332
Q ss_pred --EEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 391 --VEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 391 --~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
..++......++.+.|+..|.+|+. .|+.|.+|.-+..++-
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 2344445678999999999988864 9999999987666543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=225.09 Aligned_cols=280 Identities=19% Similarity=0.317 Sum_probs=231.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC-ceEEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
--..|+|+||+.+.+.||++-.||.|.||++... -+...+.++ ++.|.+++|+ ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 3468999999999999999999999999998764 344556655 5679999999 677888888999999999999999
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE--EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~--~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+..+....+.|++++.++.++.++++++||.+..+++..++.. +.+...++.|.+|+|++++..|+.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 9999999999999999999999999999998888888776654 34455678999999999999999999999999999
Q ss_pred CCCCceEEEEc--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 299 AKSGRELCSFH--------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 299 l~t~~~~~~~~--------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
+.++..+.... ....-|+++.|-.+ ..|++|.+.|+|.+||...+..+..+..|.+.|.+++... +++.+
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~v 260 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRV 260 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeE
Confidence 99988776321 12334777777755 4699999999999999999999999999999999999998 78999
Q ss_pred EEEECCCcEEEEEcCCCCc---eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 371 VSGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
++++.|+.|..|....... .......|...|.+++..++-.+.++.|.++.|-..
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSS 318 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccc
Confidence 9999999999998866644 233445677888888888773222336666665443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=230.84 Aligned_cols=237 Identities=17% Similarity=0.316 Sum_probs=207.2
Q ss_pred eeCCCCCceEE-EEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINR-VLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~-v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+.+|.+-|.+ ++|-+ ++-+|++|+.|.+|.+|.........++.+|+..|.|++...++. |++|+.|.+++||...
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG 130 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence 35567777777 88875 455699999999999999999999999999999999999887777 9999999999999654
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
++...+.+|...|+++++.+++ .+++|+.|.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++|+.||.|++
T Consensus 131 --~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 131 --ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRL 204 (745)
T ss_pred --hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEE
Confidence 4455588999999999999887 8999999999999975 67889999999999999999764 5889999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+ +++++.+..+|.+.|.+++...++..|+++++|++++||+.. ++...+......|+++.+-. +++ |++|++|
T Consensus 205 w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg~SD 279 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVGGSD 279 (745)
T ss_pred Eec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEeccC
Confidence 999 689999999999999999988888899999999999999987 77777776667899998876 444 7888899
Q ss_pred CcEEEEEcCCC
Q 005123 377 GSIFHWLVGHE 387 (713)
Q Consensus 377 G~I~Iwd~~~~ 387 (713)
|.|+||..+..
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999988643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=211.44 Aligned_cols=281 Identities=15% Similarity=0.295 Sum_probs=218.4
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
-.|+.|++.|.+||+|+.||.|.|||..|...-+.+.+|-..|++++||+||+.|++++.|..|++||+..+.....+ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999977765 4
Q ss_pred CCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccC----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 227 HKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
..+.|+.+.|++.... ++++--+..-.+.++...+....-... .....+..|++.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 6889999999985533 333333444455555442221111111 11223446889999999999999999999999
Q ss_pred CceEEEEccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE---------EEee--cCCCCeEEEEEeCCCCCE
Q 005123 302 GRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---------ESFR--GHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 302 ~~~~~~~~~h~-~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l---------~~~~--~h~~~V~sl~fsp~~~~~ 369 (713)
.+++..++... ..|..|.|+..|++|++-+.|+.||.|+++..... +.+. ..+..-.+++|+. ++.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccE
Confidence 99998887655 78999999999999999999999999998732111 1111 0122345788888 6666
Q ss_pred EEEEEC-CCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 370 FVSGSL-DGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 370 lasgs~-DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
+++++. ...++||....+. +++++.+.+ ....++.|++-.-+++| ..|.|+||.......
T Consensus 264 v~a~s~~aHaLYIWE~~~Gs-LVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGS-LVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred EEeccccceeEEEEecCCcc-eeeeecCCchhheeecccccceeeeeeccCCceEEEEeecccc
Confidence 666553 5579999987776 455555555 67889999999999998 899999999765544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=227.33 Aligned_cols=366 Identities=19% Similarity=0.330 Sum_probs=265.1
Q ss_pred CCCCCCCCcchhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccc--eeeeCCCCCceeeeE
Q 005123 58 NPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT--VAYTDNPSTSFAAKF 135 (713)
Q Consensus 58 ~~~~~~~~~~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~ 135 (713)
-..+++|.|.++.-.++.... ..-+..+...+..||+|++.-.+... ....+.....+.. +....+.. . -...
T Consensus 184 v~el~GH~DWIrsl~f~~~~~--~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~e~~~t~~~~~~~f~~l~~i-~-~~is 258 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGG--DDLLLASSSQDRYIRIWRIVLGDDED-SNEREDSLTTLSNLPVFMILEEI-Q-YRIS 258 (764)
T ss_pred EEEeeccchhhhhhhhhccCC--CcEEEEecCCceEEEEEEEEecCCcc-ccccccccccccCCceeeeeeeE-E-EEEe
Confidence 345788999988877766554 22234455577889999865433111 0000001111110 00000000 0 0111
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEE-----eccCCCEEEEEEccCCCEEEEEeCCC
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l-----~~h~~~V~sl~~spdg~~L~sgs~DG 208 (713)
++.-+.||.+.|.++.|++++..|++++.|.++.||.-.+. --+... .+........-|+++++.+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 22445699999999999999999999999999999975543 222222 23345578899999999999999999
Q ss_pred cEEEEEcCCC---ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC----eeEEEEccCCCceEEEEEcCC
Q 005123 209 AIKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----QEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 209 ~I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~----~~~~~l~~h~~~V~sl~~spd 281 (713)
-.++|..... .....+.+|.+.|++++|.+.|.+|++.+.|-+-|+|---.. ..+..-..|...++|+++-..
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983332 234455789999999999999999999999999999864311 223333458889999999986
Q ss_pred CCEEEEEeCCCcEEEEECCC-------------------------------------------Cce--------------
Q 005123 282 KSLLVSGGKDSLVKLWDAKS-------------------------------------------GRE-------------- 304 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t-------------------------------------------~~~-------------- 304 (713)
...+++|.++..+|+|+.-. |..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 67788888888899987520 000
Q ss_pred -------------------EEEEccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 305 -------------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 305 -------------------~~~~~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
+.++.+|...|.+++.++++++||+++... .|+||+..+...+..+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 112235677899999999999999988644 69999999999999999999999999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCce---EEEecccCCCeEEEEEcCCCcEE--EEeCCcEEEEecCCCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~~~~ 429 (713)
+||+ ++++|++.|.|.++.+|........ ......|+.-|+++.|+|++.++ ||.|.+|+||......
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 9999 8999999999999999998543322 23467799999999999999755 4599999999987663
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=244.36 Aligned_cols=236 Identities=22% Similarity=0.406 Sum_probs=221.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
+..|...|.|+..-..++.+++|+.|..+-||.+.....+..+.+|+..|.||.|+.+..+|++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 34578888899887788999999999999999999888888899999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
.++++.+|...+..+.|+|-+.+++.++.|+.+++||++...+...+.+|...|.++.|+|+|++++++++|.+++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
..|+.+..|+.|...+.++.|++..-+++.|+.|++|++||+++.+.+...+.....|.+++|++ ++..+++|..+
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 99999999999999999999999999999999999999999999999988888888999999999 77777777655
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=225.11 Aligned_cols=241 Identities=20% Similarity=0.311 Sum_probs=207.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-------
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN------- 216 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~------- 216 (713)
-+.|.|++-+++|.+|+.|+..|.|++|.+.+++++..+..|-..|+|+.|+-|+.+|++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 217 --MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 217 --~~~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+-+....+..|.-.|+++..... ..+|++++.|.+|++||+..+..+.++. ....+.+++++|.++.+++|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 23466778899999999998765 4679999999999999999998888876 667899999999999999999999
Q ss_pred cEEEEECCCC----------------ceEEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 293 LVKLWDAKSG----------------RELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 293 ~I~IwDl~t~----------------~~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.|.+.++.+. ..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9999887532 23455677877 99999999999999999999999999999999999888778
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+.|+.+.+.+.....+..-...-.+-+|++.
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHhh
Confidence 8999999977544444444444456666653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=224.24 Aligned_cols=241 Identities=17% Similarity=0.287 Sum_probs=196.8
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE------------EeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI------------LQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~------------l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
....|+++.|++.|+.|++.+.....+|+|-...+.... .++|...++|.+|+|+. ..+++++.||+
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 455799999999999999999999999999776655433 35788899999999976 57889999999
Q ss_pred EEEEEcCCCcee-eee-----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---EEEEccCCC--ceEEEEE
Q 005123 210 IKYWQNNMNNVK-ANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGW--DVKSVDW 278 (713)
Q Consensus 210 I~vwdl~~~~~~-~~~-----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~--~V~sl~~ 278 (713)
++|||++..+.. ..+ .+..-.++.++|++|++.||+|+.||.|.+||..+... ...-.+|.. .|+||+|
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 999999865422 111 12344689999999999999999999999999754322 233456766 8999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc-eEEEEccC--CCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeeEEE
Q 005123 279 HPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFHGH--KNMVLCVKWNQNGNWVLTASK------DQIIKLYDIRAMKELES 349 (713)
Q Consensus 279 spdg~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h--~~~I~si~fspdg~~Latgs~------Dg~I~IwDl~t~~~l~~ 349 (713)
+.||++|++-+.|+++++||++..+ ++....+. ...-+.++|||+.++|++|+. .+++.+||..+.+.+..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 9999999999999999999999854 44444332 334678899999999999863 56899999999999999
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+...+..|..+.|+| .-+.|++++.||+++||--
T Consensus 453 i~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 453 IDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecCCCceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 988889999999999 7788888899999998854
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=223.22 Aligned_cols=286 Identities=19% Similarity=0.320 Sum_probs=236.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCE-EEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~-L~sgs~DG~I~vwd 214 (713)
+..++.++.+.|+++.=+|-=+.+|+|..+|+|.|+|++..+.+.+++...+.|++++|.-||+. |++|+..|.+.+||
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 44567889999999999999999999999999999999999999999866799999999999975 55667779999999
Q ss_pred cCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-----------------E-------------
Q 005123 215 NNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-----------------E------------- 263 (713)
Q Consensus 215 l~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-----------------~------------- 263 (713)
++..+.+..+. .|.+.|..+.|.+....+++++.|+.+++|-.+++.- +
T Consensus 274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 99888766654 6778888888888888888888887777663321000 0
Q ss_pred ---------------------------------------------EEE--------------------------------
Q 005123 264 ---------------------------------------------RSL-------------------------------- 266 (713)
Q Consensus 264 ---------------------------------------------~~l-------------------------------- 266 (713)
..+
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 000
Q ss_pred -----------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE---ccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 267 -----------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 267 -----------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~---~~h~~~I~si~fspdg~~Latgs~ 332 (713)
+.....+++++.+..|++.+.|+..|.|.+|++.+|....++ ..|+..|+.++...-++.+++++.
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence 001134788899999999999999999999999999888888 479999999999888889999999
Q ss_pred CCeEEEEECCCCe-----------------------------------------eEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 333 DQIIKLYDIRAMK-----------------------------------------ELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 333 Dg~I~IwDl~t~~-----------------------------------------~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+|.+++||.++.. .++.|.+|...|++++||+ ++++|+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWli 592 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLI 592 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEE
Confidence 9999999976543 1234568999999999999 899999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eC-CcEEEEe
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND-HTTKFWC 424 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~D-g~v~iWd 424 (713)
+++.|++|++||+-+...+-.+.. +..++++.|+|+|.+||+ .| .-|.+|.
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999988876555543 678999999999999987 44 8899996
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=225.80 Aligned_cols=237 Identities=19% Similarity=0.310 Sum_probs=209.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
.+-|+++.+.+||+.|++|++-.+|.|||+..-.. ...+....-...+++.++|.+..++++.||.|.|||+.+..++
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 45689999999999999999999999999876443 3344444556788999999999999999999999999999999
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
+.+.+|.+.+.||.++.||..|.+|+.|++||.||++++..+.... ..+.|.++..+|.+.+|++|-+++.+.|.....
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999999999999999999999999999999999887665543 557899999999999999999999999988764
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
.....+..|.+.|.++.|+..|+|+++.+.|+.+..|..--+..+...+ ..+.|+++.+|- ++++|+||+.|....|
T Consensus 624 -p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 624 -PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATV 700 (705)
T ss_pred -ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEE
Confidence 4455667799999999999999999999999999999998888887766 457899999998 8999999999999888
Q ss_pred EEc
Q 005123 382 WLV 384 (713)
Q Consensus 382 wd~ 384 (713)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=217.50 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=231.4
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+.|+||.|+|....|++|+.|+.++||.+.. ...+..+......|.+++|.++|. .+++++....++.||+.+.++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999997654 456667777788999999999998 889999999999999998875
Q ss_pred eeee--ccC-CCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 221 KANK--SAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 221 ~~~~--~~~-~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.... .++ ...+..+.+++++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.|++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 4432 222 3467888999999999999999999999999998888887 66789999999999999999999999999
Q ss_pred ECCCCceEEEEccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 298 DAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~-~I~si~fspdg~~Latgs~Dg~I~IwDl~t------~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
|++...+++++....+ .-++++.|.++.|||+|+..|.|.|||.++ -+.+..+..-...|+++.|++ +..+|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhh
Confidence 9999999998874322 346778889999999999999999999764 355677777778899999999 78888
Q ss_pred EEEEC--CCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 371 VSGSL--DGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 371 asgs~--DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
|.+|. +..+++-.+.+......+. ...-+.|+|++|+|.+-++|- .+|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 87775 5578888775443211111 223467999999998877764 89999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-23 Score=225.83 Aligned_cols=281 Identities=22% Similarity=0.329 Sum_probs=231.4
Q ss_pred eEEEEEccCC--CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 147 INRVLWTPTG--RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 147 V~~v~~spdg--~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
|+++. +|.. +.|+.|+.+|.+.|||+.+++.+.++..+.+.|+++.=+|-=+.+++|..+|+|.|++++.++.+.++
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 66664 4443 67999999999999999999999999999999999999998899999999999999999999999998
Q ss_pred ccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 005123 225 SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS- 301 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t- 301 (713)
+...+.|++++|.-||+. +++++..|.+.+||++..+.+..+. .|.+.|..+.|.+....+++++.|+.+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 776799999999999976 5566667999999999888776665 6878888888888888888888888877662221
Q ss_pred -C--ceEEE-------------E---------------------------------------------------------
Q 005123 302 -G--RELCS-------------F--------------------------------------------------------- 308 (713)
Q Consensus 302 -~--~~~~~-------------~--------------------------------------------------------- 308 (713)
| +.++. +
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 1 00000 0
Q ss_pred -c-------------------------------------c------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 309 -H-------------------------------------G------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 309 -~-------------------------------------~------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
. . ....+++++.+.+|++.+.|+..|.|.+|++.+|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 0 0134788999999999999999999999999999
Q ss_pred eeEEEe---ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc--------------------------------
Q 005123 345 KELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-------------------------------- 389 (713)
Q Consensus 345 ~~l~~~---~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~-------------------------------- 389 (713)
-....| ..|+..|++++... -++.+++++.+|.+++||+++...
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 888888 58999999999987 678899999999999999965431
Q ss_pred --------eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 390 --------QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 --------~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+++.+.+|.+.|++++||+||++|++ .|++||+||+-...
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 11123468999999999999988865 89999999986544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-22 Score=207.33 Aligned_cols=280 Identities=18% Similarity=0.344 Sum_probs=225.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE---ecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL---QAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l---~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.+..++.|..+.|+|.+..|++.+..+.+++|+.+++.+.++. ..+ ++.|.|++|.++|+ +++|+.+|.|.||+.
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK 274 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence 3345567889999998877777777889999999988776543 222 36799999998876 568999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-----------eE---------------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------EE--------------------- 263 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-----------~~--------------------- 263 (713)
.+.+..+....|.+.|.+|+...+|.+|- |+.|+.|..||-.-.+ .+
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 98888877779999999999999998665 9999999999831100 00
Q ss_pred --------EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 005123 264 --------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 264 --------~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~ 335 (713)
....+|.+....++.+++.+.+++++.|+.++||+ ..+.+.+.. ....+.|+.|+|.| .||+|+..|.
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce
Confidence 01124677788999999999999999999999999 344444333 46778999999999 9999999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCCCcEEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~la 414 (713)
..+.|.++...+..-. ....+++++|++ ++.+||.|+.|+.|+||.++.+....... ..+...|+.|.|+.|+.++.
T Consensus 430 w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 430 WFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred EEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 9999999855554444 488999999999 89999999999999999997766555544 33457999999999999997
Q ss_pred E--eCCcEEEEecCC
Q 005123 415 S--NDHTTKFWCRNR 427 (713)
Q Consensus 415 S--~Dg~v~iWd~~~ 427 (713)
+ .|-.|.+|.-+.
T Consensus 508 ~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 508 SNSGDYEILYWKPSE 522 (626)
T ss_pred eccCceEEEEEcccc
Confidence 6 899999995443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=223.75 Aligned_cols=275 Identities=22% Similarity=0.394 Sum_probs=215.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceE------EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--eccC
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFE------MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--KSAH 227 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~------~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~--~~~~ 227 (713)
...|+.+.+||.|.++|....... +....|..+|..+.|.+....|++++.|.++++||+++.+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 347889999999999998765443 45668999999999999777899999999999999999988776 7899
Q ss_pred CCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee---------------------------EEEEccCCCceEE---E
Q 005123 228 KESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE---------------------------ERSLTGHGWDVKS---V 276 (713)
Q Consensus 228 ~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~---------------------------~~~l~~h~~~V~s---l 276 (713)
...|.+++|.+++ ..|++|+.||.|.|||++.... +..-..+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9999999999966 5688999999999999853220 1111223444555 5
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCCceEEEE--------ccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 277 DWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSF--------HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 277 ~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~~--------~~h---~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
.+..|...||+++. |+.|+|||+++....... ..+ ...++++.....|.+|++.+.|+.|++||+.+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 56668889999888 999999999975543222 122 235778888888899999999999999999864
Q ss_pred e--eEEEeecCCCC--eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeC
Q 005123 345 K--ELESFRGHRKD--VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSND 417 (713)
Q Consensus 345 ~--~l~~~~~h~~~--V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~D 417 (713)
. .+..+.++... -..-..++ ++.+|++|+.|...+||.+.+......++.+|.-.|++++|.+.. .+.|++|
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred CcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 4 34444444321 12234567 789999999999999999999888888899999999999998754 5557899
Q ss_pred CcEEEEecCCCCCc
Q 005123 418 HTTKFWCRNRPGDT 431 (713)
Q Consensus 418 g~v~iWd~~~~~~~ 431 (713)
..++||++....+.
T Consensus 383 ~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 383 FRVKIWRLSNGLEE 396 (720)
T ss_pred cceEEEeccCchhh
Confidence 99999999665443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=206.80 Aligned_cols=256 Identities=12% Similarity=0.113 Sum_probs=195.3
Q ss_pred ceEEEEEccCCCEE-EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeee
Q 005123 146 SINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 146 ~V~~v~~spdg~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~~~~ 223 (713)
.+.+++|+++++.+ ++++.++.|++||..+++....+..+. .+..++|+++++.|+++ +.|+.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 36789999999977 466778999999999988877776543 35788999999987655 5689999999998877665
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCC-eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKS 301 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg-~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwDl~t 301 (713)
+.. ...+.+++|+++++++++++.++ .+.+||.++.+.+..+. ....+.+++|++++++|+++ ..++.|++||+++
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 542 34578899999999999988765 56778998877665543 33456789999999988655 4589999999999
Q ss_pred CceEEEEccCC-------CCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 302 GRELCSFHGHK-------NMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 302 ~~~~~~~~~h~-------~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
++.+..+..+. .....++|++++++++++ +.++.|.+||+++++.+..+. +...+.+++|++ ++.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEE
Confidence 88776654221 123568899999986554 456789999999888776554 455789999999 66777665
Q ss_pred -ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 374 -SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 374 -s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
+.++.|+|||+++...+..+.. ....+.|++++
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 5689999999988765555532 45668888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=214.63 Aligned_cols=262 Identities=19% Similarity=0.241 Sum_probs=216.4
Q ss_pred CcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 166 GEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.++.+||+.++.....+++.. ..-.++..- ++++++++. ....|.+|.+.............+.|.+++-+++|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 459999999999988888652 222222222 346666664 34578999987766555445567889999999999999
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceEEEEccCCCC
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---------SGRELCSFHGHKNM 314 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~---------t~~~~~~~~~h~~~ 314 (713)
+.++..|.|++|.+.++..+..+.+|-..|+|+.|+-|+.+|++|+.||.|.+|++. +-+.++.|..|.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999763 34567888999999
Q ss_pred eEEEEEcCC--CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC----
Q 005123 315 VLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---- 388 (713)
Q Consensus 315 I~si~fspd--g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---- 388 (713)
|+++..... ..+|++++.|.+|++||+..+..+.++. ....+.+++.+| .++.+++|+.+|.|.+.++....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccc
Confidence 999988764 4689999999999999999999888876 678899999999 89999999999999998874322
Q ss_pred -----------ceEEEecccCC--CeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 389 -----------PQVEIHNVHDN--TVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 389 -----------~~~~~~~~h~~--~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
..+..+.+|.+ .|+||+++-||.+|+| .||.|.|||+....-
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 23445567877 9999999999988876 899999999865543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=235.40 Aligned_cols=243 Identities=26% Similarity=0.509 Sum_probs=205.1
Q ss_pred ceEEEEEcc-CCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 005123 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 146 ~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+..|+|+. +.++|||++.+|.|.+||+.. .+.+..+..|+..|++++|+... ++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466778875 468999999999999999987 55667789999999999998865 6788999999999999999998
Q ss_pred eeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
..++....+.|++++|++ .+.+|+++.+.|.|.+||++.. +....+.+|.+.|.|+.|+|+..+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888889999999999998 5688999999999999999864 45677889999999999999999999999999999999
Q ss_pred CCCCce--EEEEccCCCCeEEEEEcCCCCE-EEEEE--CCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 299 AKSGRE--LCSFHGHKNMVLCVKWNQNGNW-VLTAS--KDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 299 l~t~~~--~~~~~~h~~~I~si~fspdg~~-Latgs--~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
..+.+. +.++. ....|.+|+|-|+..+ |++++ .|-.|+|||++.-. ...+|..|+..++.++|...+...|.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986553 33333 4678999999997554 55555 47789999998543 457889999999999998766778999
Q ss_pred EECCCcEEEEEcCCCCc
Q 005123 373 GSLDGSIFHWLVGHETP 389 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~ 389 (713)
++.||+|..-.+++...
T Consensus 328 ~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNATT 344 (839)
T ss_pred ecCccHHHHhhhhcccC
Confidence 99999987766655443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=201.45 Aligned_cols=244 Identities=18% Similarity=0.399 Sum_probs=195.6
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~vw 213 (713)
-.+|++-|+|+.|..-|+++|+|+.|++|+|||..+ ..+....+.|++.|..|.|.+ -|..+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357999999999999999999999999999999543 456677889999999999975 47999999999999999
Q ss_pred EcCC---------CceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCee------EEEEc-------cC
Q 005123 214 QNNM---------NNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQE------ERSLT-------GH 269 (713)
Q Consensus 214 dl~~---------~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~------~~~l~-------~h 269 (713)
.-.. -....++......|++++|.+ -|-.|++++.||+||||+.-+--. ..++. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 123455667788999999998 467899999999999998743221 22222 35
Q ss_pred CCceEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----ceEEEEccCCCCeEEEEEcCC----CCEEEEEECC
Q 005123 270 GWDVKSVDWHPT---KSLLVSGGKD-----SLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN----GNWVLTASKD 333 (713)
Q Consensus 270 ~~~V~sl~~spd---g~~L~sgs~D-----g~I~IwDl~t~----~~~~~~~~h~~~I~si~fspd----g~~Latgs~D 333 (713)
.....||.|++. ..+|++|+.+ +.++||..... ..+.++.+|...|+.|+|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 567889999973 3578888765 47889966542 345567789999999999995 3568899999
Q ss_pred CeEEEEECCCC--------------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 334 QIIKLYDIRAM--------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 334 g~I~IwDl~t~--------------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
| |+||.++.. +.+..+..|.+.|..+.|+- .+..|++.+.||.|++|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 9 999998731 23556788999999999998 89999999999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=228.29 Aligned_cols=203 Identities=13% Similarity=0.328 Sum_probs=175.3
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.+|.+.|..|.||.++ +|++++.|.+|+||++...+++++|. |.+.|+||+|+| |.+|+++|+-||.|+||++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 4588999999999999766 89999999999999999999998887 999999999999 67899999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--------cCCCceEEEEEcC-CCCEEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--------GHGWDVKSVDWHP-TKSLLVS 287 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--------~h~~~V~sl~~sp-dg~~L~s 287 (713)
..+++.-. ...+-|++++|+|||++.++|+.+|.+++|++...+...... .....|+.+.|.+ +...|++
T Consensus 441 d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 88877654 455899999999999999999999999999998876654332 1123799999997 4446888
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.+.|..|+|||.++.+.+.+|++..+ .-....|+.||++|+++++|..|+||++..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 89999999999999888988886543 345678999999999999999999999854
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=198.80 Aligned_cols=286 Identities=19% Similarity=0.299 Sum_probs=220.9
Q ss_pred CCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCce----------EEE-----EeccCCCEEEEEEccC-CCEEEE
Q 005123 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNF----------EMI-----LQAHDHAIRSMVWSHN-DNWMVS 203 (713)
Q Consensus 141 ~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~----------~~~-----l~~h~~~V~sl~~spd-g~~L~s 203 (713)
..|.+.|+++.+.+ .|+++++|+.||.|.|||++.... +.. -.+|+..|.++.|-|- ...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35899999999988 589999999999999999876430 111 1357788999999884 457778
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
++.|.+++|||.++......++ ..+.|.+-++++- ..+||+|..|-.|++-|+.++.....+.+|...|.+|.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988777663 5677888888774 35688888899999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCC-ceEEEE--------------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 281 TKS-LLVSGGKDSLVKLWDAKSG-RELCSF--------------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 281 dg~-~L~sgs~Dg~I~IwDl~t~-~~~~~~--------------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
... .|++|+.||.|++||++.. .+...+ ..|.+.|..++|+.|+.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 766 5788999999999999864 333333 246678999999999999999999999999999877
Q ss_pred eeEE-Ee--ecCCCC----eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE--EE
Q 005123 345 KELE-SF--RGHRKD----VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CS 415 (713)
Q Consensus 345 ~~l~-~~--~~h~~~----V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l--aS 415 (713)
+... .+ ..|... +. +. +- +...++.--.++.+.++++-++. .+..+..|-..|.|.++.++-... ..
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs-~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGS-FVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cccccccccccccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCce-EEEeeecccceeeEEeecCchhhhhccc
Confidence 6422 11 112211 11 22 22 44556666667899999986655 566677788889999999887443 34
Q ss_pred eCCcEEEEecCCCCCc
Q 005123 416 NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 416 ~Dg~v~iWd~~~~~~~ 431 (713)
.|+.|..|........
T Consensus 355 ~d~ni~~w~p~l~~pt 370 (397)
T KOG4283|consen 355 MNGNIYMWSPALKSPT 370 (397)
T ss_pred cCCccccccccccCCc
Confidence 8999999987444333
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=200.13 Aligned_cols=244 Identities=19% Similarity=0.419 Sum_probs=193.8
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEE
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iw 255 (713)
..+|.+-|+++.|...|+.+++|+.|.+|+|||.+.. .+....+.|.+.|..+.|.. -|..+|+|+.|++|.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3568889999999999999999999999999996543 45666788999999999965 57899999999999999
Q ss_pred EcC---------CCeeEEEEccCCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCC------ceEEEEc-------cC
Q 005123 256 DFA---------RCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSG------RELCSFH-------GH 311 (713)
Q Consensus 256 Dl~---------~~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~------~~~~~~~-------~h 311 (713)
.-. ......++......|++|+|.| -|-.|++++.||.|+||+.-.- .....+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 751 1223455667788999999998 4678999999999999976542 2222232 35
Q ss_pred CCCeEEEEEcCC---CCEEEEEECC-----CeEEEEECCC----CeeEEEeecCCCCeEEEEEeCCCC---CEEEEEECC
Q 005123 312 KNMVLCVKWNQN---GNWVLTASKD-----QIIKLYDIRA----MKELESFRGHRKDVTALAWHPFHE---EYFVSGSLD 376 (713)
Q Consensus 312 ~~~I~si~fspd---g~~Latgs~D-----g~I~IwDl~t----~~~l~~~~~h~~~V~sl~fsp~~~---~~lasgs~D 376 (713)
.....|+.|++. ..+||+|+.+ +.++||.... ...+.++.+|...|++|+|.|.-+ .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 667889999974 5678888866 4788887653 334667789999999999999544 479999999
Q ss_pred CcEEEEEcCCCC-------------------ceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 377 GSIFHWLVGHET-------------------PQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 377 G~I~Iwd~~~~~-------------------~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
| |+||.++... ..+..+..|.+.|+.+.|+-.|.+|+| .||+||+|..+
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 9999996311 123345679999999999999999987 99999999754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=212.07 Aligned_cols=243 Identities=21% Similarity=0.378 Sum_probs=209.2
Q ss_pred eEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 005123 178 FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD 256 (713)
++..+.+|.+.|.|++=+|+. ..+++|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455678899999999999987 7899999999999999999999999999999999999976 6789999999999999
Q ss_pred cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCe
Q 005123 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQI 335 (713)
Q Consensus 257 l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~ 335 (713)
++- ..+.++. ....+..|+-+..++.+++|+. .|.|||......+..+.-....|.++.|+|.. ..|++|.+|+.
T Consensus 136 ~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 865 3555554 3456777877777788888875 59999999888898888778889999999965 55667779999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE--
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-- 413 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-- 413 (713)
|.|||+++...+..+. -+..-+.|+|+| ....|+++++|..++.||++.-...+.+..+|.+.|.+++|+|.|.-+
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999998887765 344568899999 888999999999999999999888889999999999999999999444
Q ss_pred EEeCCcEEEEecCCC
Q 005123 414 CSNDHTTKFWCRNRP 428 (713)
Q Consensus 414 aS~Dg~v~iWd~~~~ 428 (713)
+|.|.+|+||..+..
T Consensus 290 gsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccceEEEeecCCC
Confidence 459999999987654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=219.90 Aligned_cols=242 Identities=19% Similarity=0.353 Sum_probs=206.5
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 005123 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
..|....+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++. ++.+|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368888999999999999999999999999987766 444444447777877776 55699999999999999998887
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
.-..+....-.+++++|+-+|+++|.|++|-.|++.++.+......+++|++.|.++.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 76666667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeecC--------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcE
Q 005123 342 RAMKELESFRGH--------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYL 412 (713)
Q Consensus 342 ~t~~~l~~~~~h--------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 412 (713)
.++.+..++.+- ...++.++|+| ++..|+..+.|+.|++|+.........+...+. ..+.++.|+|+|.+
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 988876655431 34577899999 555666677788999999987776666655543 44999999999999
Q ss_pred EEE--eCCcEEEEecCC
Q 005123 413 LCS--NDHTTKFWCRNR 427 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~ 427 (713)
||+ .||.|.|||.+.
T Consensus 247 iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDT 263 (933)
T ss_pred EeeeccCCcEEEEeccc
Confidence 976 899999999985
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-21 Score=199.62 Aligned_cols=233 Identities=18% Similarity=0.377 Sum_probs=192.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV--- 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~--- 220 (713)
+.-|.|++|.++|+ ++||.++|.|.||+..+.+..+....|++.|.+++...+|.+|- |+.|..|..||-+-.+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccc
Confidence 46799999999997 88999999999999998888888889999999999998887665 99999999998321100
Q ss_pred -------------------------------------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE
Q 005123 221 -------------------------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 221 -------------------------------------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~ 263 (713)
.....+|.+....++.+++.+.+++|+.|+.|++|+ +.+.+
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 001135667788889999999999999999999999 44444
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.+.. ....+.|+.|+|.| .|++|+..|...+.|.++...+..-.. +..+++++|+++|.+||+|+.|+.|+||.+..
T Consensus 402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 4433 45789999999999 999999999999999998655554444 88999999999999999999999999999864
Q ss_pred C-eeEEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 344 M-KELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 344 ~-~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
. ...... +.+...|+.+.||. ++++|.+-+.|-.|..|.-
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEcc
Confidence 3 333222 33458899999999 8999999999999999943
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=195.79 Aligned_cols=233 Identities=17% Similarity=0.288 Sum_probs=192.5
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~--~L~sgs~DG~I~vwdl~ 216 (713)
....|.++|.+++|+.||..+++|+.|+.+++||+.++ ....+..|++.|.++.|-+... .|++|+.|++|+.||.+
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 34569999999999999999999999999999999998 5667788999999999987665 89999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
....+.++. ..+.|.++.. ....++++..++.|.+|++++...+... ......++||++..|.+..+.|+-+|.+
T Consensus 146 ~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 146 SSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred CCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 888877763 4566666655 3457888899999999999765433221 1234568999999998888999999999
Q ss_pred EEEECCCC--ceEEEEccCCC---------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 295 KLWDAKSG--RELCSFHGHKN---------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 295 ~IwDl~t~--~~~~~~~~h~~---------~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.|..++.+ +.-.+|+.|.. .|++|+|+|.-..|+|++.||++.+||-.....+++...|...|++++|+
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 99998876 44445555542 47889999998899999999999999999888899989999999999999
Q ss_pred CCCCCEEE-EEECC
Q 005123 364 PFHEEYFV-SGSLD 376 (713)
Q Consensus 364 p~~~~~la-sgs~D 376 (713)
. ++.++| +.+.|
T Consensus 303 ~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 303 R-NGSIFAYALGYD 315 (347)
T ss_pred C-CCCEEEEEeecc
Confidence 8 666655 44444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=205.32 Aligned_cols=286 Identities=19% Similarity=0.257 Sum_probs=221.1
Q ss_pred EEeeCCCCCceEEEEEccCC--CEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 137 HTSLNKNRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg--~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
....+-+...|++++|+|.. +++|+|...|.|-+||+.+ ...+..+..|...|.+|.|+|.+ ..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34566788999999999975 5788899999999999852 23456678899999999999965 68899999999
Q ss_pred EEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCC-CCEE
Q 005123 210 IKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPT-KSLL 285 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spd-g~~L 285 (713)
|++-|++.......+.. ....+.++.|+.+...++.+..-|...+||+++... ...+..|...|++|+++|- ..+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999988754433333 556678888998888888888888999999987654 5566778889999999994 4589
Q ss_pred EEEeCCCcEEEEECCCCc--e--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCeeEEEeecCC---
Q 005123 286 VSGGKDSLVKLWDAKSGR--E--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR----AMKELESFRGHR--- 354 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~--~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~----t~~~l~~~~~h~--- 354 (713)
++++.|++++|||++.-. . +.....|...|.++.|||++-.|+|.+.|..|+|||.. ....+.++. |.
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t 417 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT 417 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcc
Confidence 999999999999998632 2 23345699999999999987779999999999999984 333344443 32
Q ss_pred -C--CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCc-EEEE--eCCcEEEEe
Q 005123 355 -K--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGY-LLCS--NDHTTKFWC 424 (713)
Q Consensus 355 -~--~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~-~laS--~Dg~v~iWd 424 (713)
. .....+|.| +..+|++|-.-..|-|+|-+.+..+.++.......|.++ .|+|-+. ++++ ..|.|.||.
T Consensus 418 ~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 418 GRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 2 245668999 899999999999999999866654455444334455554 7999887 5554 556666664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=209.73 Aligned_cols=263 Identities=17% Similarity=0.297 Sum_probs=215.2
Q ss_pred eEEEEEccCCCEEEEE--ECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 147 INRVLWTPTGRRLITG--SQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 147 V~~v~~spdg~~Latg--s~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
|.++.|+.... |+++ +.|..|++|.-.. ++....-+.....-.||+......++++|+..++|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 88999988775 4444 4578889996332 22222222222344455555556899999999999999999888899
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-CCceEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-~~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~ 300 (713)
.++.|...|+++.++..+.+||+++..|.|.|..+.++.....|... ...|.-+.|++..+ +|.+++++|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999999999999999999998887777644 44567899999665 56778999999999998
Q ss_pred CCceEEE-EccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 301 SGRELCS-FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 301 t~~~~~~-~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
....+.. .+.|......|+|+| +..+|++.+.|..|.+||++..+....+. ...+.++++|++ ++.+|++|+..|.
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGE 273 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCce
Confidence 7666554 367899999999999 56778899999999999999776666554 567889999999 8999999999999
Q ss_pred EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 379 I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
|..||++..+..+.+..+|...|++|+|-+.-.+
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tv 307 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTV 307 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeeccee
Confidence 9999999999999999999999999999887633
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=200.54 Aligned_cols=242 Identities=25% Similarity=0.475 Sum_probs=191.4
Q ss_pred EeeCCCCCceEEEEEccCCC--EEEEEECCCcEEEEeCCC----------------CceEEEEeccCCCEEEEEEccCC-
Q 005123 138 TSLNKNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQS----------------FNFEMILQAHDHAIRSMVWSHND- 198 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~--~Latgs~dg~V~Iwd~~t----------------~~~~~~l~~h~~~V~sl~~spdg- 198 (713)
...-.|.+.|+.+..++-++ +.++-+..|.|+|||+.. .+.+.++.+|...=..|+||+-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34456778888888777653 445556789999999532 34567788899999999999943
Q ss_pred CEEEEEeCCCcEEEEEcCCCcee---eeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee--EEEEccCCCc
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE--ERSLTGHGWD 272 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~---~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~--~~~l~~h~~~ 272 (713)
..|++|..-+.|++|...++.-. .-+.+|+..|.+|+||+.. ..|++|+.||+|+|||++.+.. ....+.|.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 35888988899999998876532 2345699999999999965 6789999999999999988722 2333789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCee--
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE-- 346 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t---~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~-- 346 (713)
|+.|+|+.+..+|++|+.||+++|||+|+ ++.+..|+.|+..|++|.|+| +...|++++.|..|.|||+.....
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999999888999999999999999986 567889999999999999999 456788899999999999863211
Q ss_pred ------E--------EEeecC--CCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 347 ------L--------ESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 347 ------l--------~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
. ..+-.| ...|..+.|++....+|++.+.||.-
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 0 011123 35688999999888999999999743
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=193.21 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=204.7
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--e--eccCCCCeeEEEEecCCCEEEEE-ECCCeEEEE
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--N--KSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVW 255 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~--~--~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iw 255 (713)
.+++|.+.|++++|+.||++|++++.|++|+||++++..... . .....+.-+.+.|++|.+.++.. -...+|++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 578999999999999999999999999999999988642211 0 11122366889999998766554 455689999
Q ss_pred EcCCCee---EE---------EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCC
Q 005123 256 DFARCQE---ER---------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323 (713)
Q Consensus 256 Dl~~~~~---~~---------~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd 323 (713)
.+.+.+. .. .-+.|...|.++-....+++|++++.|.+|.|||++ |+.+..+......-+..+.||+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 8743211 10 112355667777777788999999999999999999 8999998888888888999999
Q ss_pred CCEEEEEECCCeEEEEECC---CC-----eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc------
Q 005123 324 GNWVLTASKDQIIKLYDIR---AM-----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------ 389 (713)
Q Consensus 324 g~~Latgs~Dg~I~IwDl~---t~-----~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~------ 389 (713)
|++|++++-.-.|+||.+- .| +.+..+++|.+.|+.++|++ +.+.+++.|.||+++|||++-...
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999999998899999863 22 34677899999999999999 889999999999999999853211
Q ss_pred eE----EEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCccccccccCCcccccccceEeeecCCCCCCCCCC
Q 005123 390 QV----EIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEG 464 (713)
Q Consensus 390 ~~----~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (713)
.+ ..+....+.-..|+.+|++.+||. ....+++|..++... ..... ...+..+..+...+++.++....
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~-~~~~e-----~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD-YPELE-----DIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc-chhHH-----HhhcCceeeEEecCCCcEEeeec
Confidence 11 111122334458999999988875 788899998766332 21111 12234445556666666665555
Q ss_pred CCCCC
Q 005123 465 PTTPG 469 (713)
Q Consensus 465 ~~rag 469 (713)
.+.+.
T Consensus 393 dr~vr 397 (420)
T KOG2096|consen 393 DRYVR 397 (420)
T ss_pred ceeee
Confidence 44443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=213.59 Aligned_cols=250 Identities=16% Similarity=0.289 Sum_probs=195.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE--EeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~--l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwd 214 (713)
+....|.+.|..++|.+....|++++.|.++++||+++.+++.. +.+|...|.++||.+++ ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 34557999999999999778899999999999999999988776 89999999999999976 5778999999999999
Q ss_pred cCCCce---------------------------eeeeccCCCCeeE---EEEecCCCEEEEEEC-CCeEEEEEcCCCeeE
Q 005123 215 NNMNNV---------------------------KANKSAHKESVRD---LSFCRTDLKFCSCSD-DTTVKVWDFARCQEE 263 (713)
Q Consensus 215 l~~~~~---------------------------~~~~~~~~~~V~~---l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~ 263 (713)
++.... +.....+...|.+ +.+..|+..||+++. |+.|+|||+++....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 764320 0111233444555 556678899999988 999999999876543
Q ss_pred EEE--------ccC---CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccCCC--CeEEEEEcCCCCEEE
Q 005123 264 RSL--------TGH---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVL 328 (713)
Q Consensus 264 ~~l--------~~h---~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~--~I~si~fspdg~~La 328 (713)
... ..+ ...+.++..+..|.+|++.+.|+.|++||+.+.. .+..+.++.. .-..-..++|+.+|+
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 221 112 3457888888889999999999999999998643 2333333221 122334688999999
Q ss_pred EEECCCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 329 TASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+|+.|...++|.+.+.+. ...+.+|...|++++|.+..-.-++++++|-+++||++..+
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999987653 56678899999999999977777899999999999999554
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-19 Score=194.84 Aligned_cols=289 Identities=26% Similarity=0.504 Sum_probs=238.0
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-eEEEEeccC-CCEEEEEE-ccCCC-EEEEEeC-CCcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHD-HAIRSMVW-SHNDN-WMVSGDD-GGAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-~~~~l~~h~-~~V~sl~~-spdg~-~L~sgs~-DG~I~vw 213 (713)
.+..|...|.++.|..++..++.++.|+.+.+|+..... ....+..+. ..+..+.+ +.++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999999999999999999999998886 666666644 37777777 77777 5555444 8999999
Q ss_pred EcCC-CceeeeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEeC
Q 005123 214 QNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGK 290 (713)
Q Consensus 214 dl~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~ 290 (713)
+... ......+..|...|.+++|++++..+++++. |+.+++|++.....+..+..|...|.+++|++++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7777888899999999999999998888885 99999999998888888888999999999999887 5555589
Q ss_pred CCcEEEEECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|+.|++||...+..+. .+..|...+ ...|++++.++++++.|+.+++||++.... +..+..|...|.++.|++ ++.
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCC
Confidence 9999999999888777 677777775 448999998999999999999999987665 455567889999999999 677
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCC-CcEEEE--eCCcEEEEecCCCC
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPI-GYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spd-g~~laS--~Dg~v~iWd~~~~~ 429 (713)
.+++++.|+.+.+||+.......... ..|...|..+.|.++ ..++.+ .|+.+++|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77779989899999887666444443 467778999999433 233333 77899999987766
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=194.86 Aligned_cols=216 Identities=23% Similarity=0.380 Sum_probs=178.6
Q ss_pred eccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCee----------EE-----EEccCCCceEEEEEcC-CCCEEE
Q 005123 224 KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQE----------ER-----SLTGHGWDVKSVDWHP-TKSLLV 286 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~----------~~-----~l~~h~~~V~sl~~sp-dg~~L~ 286 (713)
...|.+.|+++.+.+ .++++++|+.||.|.+||+++... +. .-.+|...|.++.|.| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 356889999999876 678999999999999999965331 01 1135778899999999 667899
Q ss_pred EEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
+++.|.++++||.++.+....|+ ..+.|.+-++|| ..-+||+|..|-.|++.|+.+|...+++.+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988888887 567788888888 34578889999999999999999999999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCceEEE--------------ecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEI--------------HNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNR 427 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~--------------~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~ 427 (713)
|..+.+|++|+.||.|++||++.....+.. ..+|.+.|+.++|+.++.+++ +.|..+++|+...
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 987888999999999999999765333332 335778999999999997665 5999999999988
Q ss_pred CCCccccccccCC
Q 005123 428 PGDTARDKFNMGQ 440 (713)
Q Consensus 428 ~~~~~~~~~~~~~ 440 (713)
.....+..-++..
T Consensus 278 G~ntl~~~g~~~~ 290 (397)
T KOG4283|consen 278 GRNTLREFGPIIH 290 (397)
T ss_pred Ccccccccccccc
Confidence 8777765444333
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=200.38 Aligned_cols=283 Identities=22% Similarity=0.266 Sum_probs=227.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
+....|.+++|+ ++.+|++.+.+|+|.-||+.+++.+..+....+.|.+++.++.++.+++|++||.+.+++...+++.
T Consensus 67 ~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 67 PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence 345689999999 5667999999999999999999999999999999999999999999999999998888888777654
Q ss_pred e--eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-------c-CCCceEEEEEcCCCCEEEEEeCC
Q 005123 222 A--NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-------G-HGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 222 ~--~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-------~-h~~~V~sl~~spdg~~L~sgs~D 291 (713)
. .+...++.|.+++|++++..|++|+.||.|++||+.++..+...+ . ...-|++|.|..+ ..|++|...
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~ 224 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSA 224 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCC
Confidence 3 334456899999999999999999999999999999887766322 1 2334778888755 479999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----EEEeecCCCCeEEEEEeCCCC
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~----l~~~~~h~~~V~sl~fsp~~~ 367 (713)
|+|.+||...+..+..+..|.+.|.+++.+.++++|++++.|+.|..|...+.+. ......|...|.+++...
T Consensus 225 G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~--- 301 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE--- 301 (691)
T ss_pred ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---
Confidence 9999999999999999999999999999999999999999999999998876533 233456788888888765
Q ss_pred CEEEEEECCCcEEEEEcCC------------------------------------------C--------CceEEEeccc
Q 005123 368 EYFVSGSLDGSIFHWLVGH------------------------------------------E--------TPQVEIHNVH 397 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~------------------------------------------~--------~~~~~~~~~h 397 (713)
..|++|+.|..+.+-..+. . ..+..+....
T Consensus 302 ~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 302 NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred ceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC
Confidence 3777787777766644322 0 0011122222
Q ss_pred CCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 398 DNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
...|.+.+.+|+|.++|- .-..++||.++...
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVSRTKIYRLQPDP 414 (691)
T ss_pred ccceeeeccCCCCCEEEEeeccceEEEEeccCc
Confidence 356889999999999974 77888888887654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-22 Score=210.52 Aligned_cols=121 Identities=11% Similarity=0.203 Sum_probs=103.0
Q ss_pred eeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCce------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 005123 139 SLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~ 211 (713)
.|.+|.+.|+.+.|++- ..+||||+.|..|+||.+..+-. ...+...+-.|.|+.|++..+-|+..+..|+++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 46789999999999995 45788999999999999874321 122333455688999999877777777789999
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~ 259 (713)
|||+.+.+.+..+.+|.+.|.+..|+.||++|++++.|+.|+|||-+.
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999999999999999999999999999999999999999999753
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=189.23 Aligned_cols=239 Identities=19% Similarity=0.349 Sum_probs=192.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
+..|++|.|++.++.|++++.||++++||+........+ .|...+.+++|.. ...+++++.||.|+.+|++++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 678999999999999999999999999999988665554 6889999999985 6789999999999999999876554
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
+-.|...|.||..++....+++|+.|++|++||.+....+..+. ....|.++.. .++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 44599999999999988899999999999999999855555555 3447888877 57789999999999999999877
Q ss_pred eEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC---ceEEEecccC---------CCeEEEEEcCCCc
Q 005123 346 ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVHD---------NTVWDLAWHPIGY 411 (713)
Q Consensus 346 ~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---~~~~~~~~h~---------~~V~~l~~spdg~ 411 (713)
.....+ ..+-.+.+|++.| ++.-++++|-||.|.+=.++... ...-.+..|. -+|++|+|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 654332 2345689999999 77888999999999887775541 1112223343 2799999999987
Q ss_pred EEEE--eCCcEEEEecCCCCCc
Q 005123 412 LLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 412 ~laS--~Dg~v~iWd~~~~~~~ 431 (713)
.+++ .||.|.+||+...+..
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred eEEecCCCceEEEccCcchhhh
Confidence 7766 9999999998665543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=188.53 Aligned_cols=275 Identities=18% Similarity=0.339 Sum_probs=214.0
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------------ceEEEEe-ccCCCEEEEEEc-------cCCCEEE
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQ-AHDHAIRSMVWS-------HNDNWMV 202 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------------~~~~~l~-~h~~~V~sl~~s-------pdg~~L~ 202 (713)
-.+-...+.|+|||..|++-+.|..+.+|++... +...+++ .....|...+|- |+.++++
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 3344567899999999999999999999985321 1111121 124567788885 5678999
Q ss_pred EEeCCCcEEEEEcCCCceeeeecc--CCC---CeeEEEEecCCCEEEEEECCCeEEEEEc-CCCeeE---EEE----ccC
Q 005123 203 SGDDGGAIKYWQNNMNNVKANKSA--HKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDF-ARCQEE---RSL----TGH 269 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~~~~~~~--~~~---~V~~l~fs~dg~~Las~s~Dg~I~iwDl-~~~~~~---~~l----~~h 269 (713)
+.+.+.-|++||.-+++....+.. |.+ ...+|+|++||.+|++|. .++|+|||+ +.+... .++ .+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999999998877654 222 456899999999998875 568999999 333221 111 123
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC-ee
Q 005123 270 GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAM-KE 346 (713)
Q Consensus 270 ~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~-~~ 346 (713)
.+-|.|++|+| +.+.+++++....+-||.-...+.+..+.+|.+.|+.+.|.++|+.|++|+. |..|..||+|.. ..
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 56789999999 5569999999999999998889999999999999999999999999999884 678999999864 45
Q ss_pred EEEeecCCC-CeEEEEE--eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCc
Q 005123 347 LESFRGHRK-DVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHT 419 (713)
Q Consensus 347 l~~~~~h~~-~V~sl~f--sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~ 419 (713)
+..+..|.. .-..|-| .+ .+++|++|+.||.|++||+++-.........++..|+.++++|---++|+..|.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 666666655 3334444 45 688999999999999999988565566677789999999999998888875554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=197.96 Aligned_cols=279 Identities=22% Similarity=0.356 Sum_probs=204.4
Q ss_pred EEEEccCCCEEEEEECCC-----cEEEEeCCCCceEEEEeccC----CCEEEEEEcc-------CCCEEEEEeCCCcEEE
Q 005123 149 RVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHD----HAIRSMVWSH-------NDNWMVSGDDGGAIKY 212 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~~h~----~~V~sl~~sp-------dg~~L~sgs~DG~I~v 212 (713)
.+..-|+.++|+++-.+. .|+||+-.... .+..|. ..-.|++|.. .|+++|+|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 344556666666664432 35666644311 122222 2235777753 3589999999999999
Q ss_pred EEcCCCcee---------------------eeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCC
Q 005123 213 WQNNMNNVK---------------------ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 213 wdl~~~~~~---------------------~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~ 270 (713)
||+.-...+ ....+|+..|.+|+|+.+- +.||+|+.|.+|++||+.++++..++..|.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 997532100 0113577888899998754 678999999999999999999999999999
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eeE
Q 005123 271 WDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KEL 347 (713)
Q Consensus 271 ~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~-~~l 347 (713)
..|.++.|++ ...+|++|+.|++|.++|+|.-......-...+.|-.++|.+. ...+++++.||+|+-+|+|+. +++
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence 9999999999 5679999999999999999953322222225678999999984 566778889999999999975 899
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCCC-cEEE-E-eCCcEEEE
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIG-YLLC-S-NDHTTKFW 423 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg-~~la-S-~Dg~v~iW 423 (713)
.+++.|...|++|+++.....++++++.|+.|++|++.......... .-.-+...|.++.++- .+++ + ..+.++||
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 99999999999999999888999999999999999996554322211 1112446677777776 2333 3 55679999
Q ss_pred ecCCCCC
Q 005123 424 CRNRPGD 430 (713)
Q Consensus 424 d~~~~~~ 430 (713)
|+.....
T Consensus 447 d~~~~~~ 453 (463)
T KOG0270|consen 447 DIFTNSP 453 (463)
T ss_pred ecccChh
Confidence 9855443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=195.91 Aligned_cols=288 Identities=19% Similarity=0.315 Sum_probs=221.4
Q ss_pred CCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCC---------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 143 H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~---------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
...+|..+.|..+.. +|+||+.|..|+||.++.. +....+..|..+|++|.|+++|++|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346799999999876 9999999999999975432 234567789999999999999999999999999999
Q ss_pred EEcC--------C--------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEE
Q 005123 213 WQNN--------M--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (713)
Q Consensus 213 wdl~--------~--------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl 276 (713)
|... + ....+.+.+|.+.|.+++|++++.++++++.|.++++||+..+..+..+..|...|..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 12445567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--------c-----------C----CCCeEEEEEcCCCCEEEEEEC-
Q 005123 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--------G-----------H----KNMVLCVKWNQNGNWVLTASK- 332 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~--------~-----------h----~~~I~si~fspdg~~Latgs~- 332 (713)
+|.|-++++++-+.|...+++++...+.+.... . | ......++|+|||.+|++.+.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999999887777766433322111 0 1 123456889999999987532
Q ss_pred ---C-----CeEEEEECCCC-eeEEEeecCCCCeEEEEEeCC-----------------CCCEEEEEECCCcEEEEEcCC
Q 005123 333 ---D-----QIIKLYDIRAM-KELESFRGHRKDVTALAWHPF-----------------HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 333 ---D-----g~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~-----------------~~~~lasgs~DG~I~Iwd~~~ 386 (713)
. ++.++|+-+.. +.+..+......+..+.|+|. .+-.+|.++.+ .|+|||..+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence 2 23455554432 234444445555566665541 12345555554 899999988
Q ss_pred CCceEEEecccCCCeEEEEEcCCCcEE--EEeCCcEEEEecCCCCCc
Q 005123 387 ETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~~~~~~ 431 (713)
-.....+...|-..|++++|+.||.++ .|.||...+-.++..+..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 888888888899999999999999555 359999998887654443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=194.80 Aligned_cols=241 Identities=21% Similarity=0.386 Sum_probs=187.0
Q ss_pred EeccCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCC----------------CceeeeeccCCCCeeEEEEecCC-CE
Q 005123 182 LQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----------------NNVKANKSAHKESVRDLSFCRTD-LK 242 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg--~~L~sgs~DG~I~vwdl~~----------------~~~~~~~~~~~~~V~~l~fs~dg-~~ 242 (713)
...|.+.|+.+.-++-+ .+.++-+..|.|+||++.. .+.+.++.+|...=..|+||+-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34567777777666654 4555667889999999642 23456677888888999999843 34
Q ss_pred EEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCe
Q 005123 243 FCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMV 315 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I 315 (713)
|++|..-+.|++|...++.- ..-+.+|...|..|+|+|. ...|++|+.|++|+|||+|++ .++. .+.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCce
Confidence 78888888999999877543 2346679999999999994 568999999999999999987 2333 37899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC---CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc---
Q 005123 316 LCVKWNQNGNWVLTASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--- 389 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg~I~IwDl~t---~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~--- 389 (713)
+.|+|+.+..+||+|+.||+++|||+|. ++.+..|+.|...|++|.|+|.+...|++++.|..|.|||+.....
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999985 4568899999999999999998889999999999999999954322
Q ss_pred ------------eEEEeccc--CCCeEEEEEcCCC--cEEEE-eCCcEEEE
Q 005123 390 ------------QVEIHNVH--DNTVWDLAWHPIG--YLLCS-NDHTTKFW 423 (713)
Q Consensus 390 ------------~~~~~~~h--~~~V~~l~~spdg--~~laS-~Dg~v~iW 423 (713)
.-.++-.| ...|..+.|++.- .++.+ .||.-.+.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 01122233 3578899999854 55554 56544443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=225.98 Aligned_cols=280 Identities=21% Similarity=0.400 Sum_probs=215.5
Q ss_pred EEEEEccCCC-EEEEE----------ECCCcEEEEeCCC--Cc----eEEEEeccCCCEEEEEEccCCCE----EEEEeC
Q 005123 148 NRVLWTPTGR-RLITG----------SQSGEFTLWNGQS--FN----FEMILQAHDHAIRSMVWSHNDNW----MVSGDD 206 (713)
Q Consensus 148 ~~v~~spdg~-~Latg----------s~dg~V~Iwd~~t--~~----~~~~l~~h~~~V~sl~~spdg~~----L~sgs~ 206 (713)
..++|++++. +||+| +.+.++.||.+.. .+ .+..+. .....+.++|.+.++. |+.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578888886 45554 2345556664332 22 122222 2456789999998765 888999
Q ss_pred CCcEEEEEcCCC------ceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEE
Q 005123 207 GGAIKYWQNNMN------NVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVD 277 (713)
Q Consensus 207 DG~I~vwdl~~~------~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~ 277 (713)
||.|.+||...- .++..+..|.+.|..|.|++... .||+|++||.|.|||+++-+.-.... ...+.|.+|+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999997652 35566788999999999999765 99999999999999998755444332 2457899999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCceEEEEccCCC--CeEEEEEcCCC-CEEEEEECCC---eEEEEECCCC-eeEEE
Q 005123 278 WHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM-KELES 349 (713)
Q Consensus 278 ~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~--~I~si~fspdg-~~Latgs~Dg---~I~IwDl~t~-~~l~~ 349 (713)
|+.. ...|++++.+|++.|||+|..+.+..+..+.. .+..+.|+|+. ..|++++.|. .|.+||+|.- ..+++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9974 45788899999999999999888877765544 47889999975 4566666554 6999999854 46788
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EE--EEeCCcEEEEecC
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LL--CSNDHTTKFWCRN 426 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l--aS~Dg~v~iWd~~ 426 (713)
+.+|...|.++.|++.|.++|++++.|+.|.+|+.++++.+..+-. ..+.+..+.|++..- ++ ++-||.|.||.+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8999999999999998889999999999999999988775555543 678899999999773 33 4599999999987
Q ss_pred CCC
Q 005123 427 RPG 429 (713)
Q Consensus 427 ~~~ 429 (713)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 655
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=201.51 Aligned_cols=243 Identities=18% Similarity=0.290 Sum_probs=192.4
Q ss_pred EEEEEccC-------CCEEEEEECCCcEEEEeCCCCce---------------------EEEEeccCCCEEEEEEccCC-
Q 005123 148 NRVLWTPT-------GRRLITGSQSGEFTLWNGQSFNF---------------------EMILQAHDHAIRSMVWSHND- 198 (713)
Q Consensus 148 ~~v~~spd-------g~~Latgs~dg~V~Iwd~~t~~~---------------------~~~l~~h~~~V~sl~~spdg- 198 (713)
.|++|... |+++|+|+.|..|.|||+.-... -....+|+.+|.+++|+.+-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666543 68999999999999999642110 01123688889999998764
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEE
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~ 277 (713)
+.||+|+.|.+|++||+.+++...++..|...|.++.|++.. .+|++|+.|++|.+.|++........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 578899999999999999999999999999999999999854 7799999999999999985333222223557899999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCee--EEEeec
Q 005123 278 WHPT-KSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKE--LESFRG 352 (713)
Q Consensus 278 ~spd-g~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~--l~~~~~ 352 (713)
|++. ...+++++.||+|+-+|+|+. +++.+++.|...|.+|+++.. -.+|++++.|+.|++|++..... +..-.-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 9984 457888889999999999984 899999999999999999884 56788999999999999874332 221111
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
.-+...|.++.++...+++.|+..+.++|||+.+...+
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 12346778888877778899999999999999766543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=226.84 Aligned_cols=245 Identities=20% Similarity=0.373 Sum_probs=204.6
Q ss_pred CCceEEEEEccCCCE----EEEEECCCcEEEEeCCCC------ceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEE
Q 005123 144 RCSINRVLWTPTGRR----LITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 212 (713)
Q Consensus 144 ~~~V~~v~~spdg~~----Latgs~dg~V~Iwd~~t~------~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~v 212 (713)
..+.++++|.+.++. ||.|.+||.|.+||.... ..+.++..|++.|..+.|++... +|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 446788999998876 888999999999996552 34566788999999999999765 9999999999999
Q ss_pred EEcCCCceeeee--ccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCC--ceEEEEEcCCCC-EEE
Q 005123 213 WQNNMNNVKANK--SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKSVDWHPTKS-LLV 286 (713)
Q Consensus 213 wdl~~~~~~~~~--~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~--~V~sl~~spdg~-~L~ 286 (713)
||++.-+.-... ....+.|.+|+|+..- ..|++++.+|++.|||++..+.+..+..+.. .+..|+|+|+.. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875544333 2356789999998754 5688889999999999999888877765544 478999999764 566
Q ss_pred EEeCCC---cEEEEECCCC-ceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE
Q 005123 287 SGGKDS---LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (713)
Q Consensus 287 sgs~Dg---~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~ 361 (713)
+++.|. .|.+||+|.- ..++++.+|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+.....++..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666654 4999999864 4567788999999999999955 8899999999999999999999999998889999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|++.+..+|++++.||.|.|+.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999985443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=201.10 Aligned_cols=287 Identities=21% Similarity=0.438 Sum_probs=229.7
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
+.........|+++++.+++-+..|-.++|..+. ......+.+|.+.|++|+|+|.|++|++.+.|-+-+||---..
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 4456789999999999999999999999998333 2345567899999999999999999999999999999854411
Q ss_pred ----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-----------------------------------
Q 005123 219 ----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----------------------------------- 259 (713)
Q Consensus 219 ----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~----------------------------------- 259 (713)
..+..-..|...++|++|-+....|++|.++..+|+|+.-.
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 23333456888999999998777899999999999987410
Q ss_pred --------Ce---------------------------------eEEEEccCCCceEEEEEcCCCCEEEEEeCCC-----c
Q 005123 260 --------CQ---------------------------------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-----L 293 (713)
Q Consensus 260 --------~~---------------------------------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-----~ 293 (713)
+. .+.++.+|...|.+++.+++++++|++++.. .
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 00 0111346888899999999999999998754 4
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----eEEEeecCCCCeEEEEEeCCCCCE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~----~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|+||+..+...+..+..|.-.|+.++||+||++|++.+.|+++.+|...... .....+.|+.-|.++.|+| ++.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccce
Confidence 9999999999999999999999999999999999999999999999875322 1234678999999999999 7889
Q ss_pred EEEEECCCcEEEEEcCCC--CceEE-EecccCCCeEEEEEcCCC----c-EE-EE-eCCcEEEEecCCCC
Q 005123 370 FVSGSLDGSIFHWLVGHE--TPQVE-IHNVHDNTVWDLAWHPIG----Y-LL-CS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~--~~~~~-~~~~h~~~V~~l~~spdg----~-~l-aS-~Dg~v~iWd~~~~~ 429 (713)
|+|+|.|.+|+||..... +...+ ....+...|++++|.+-. . ++ ++ ..|.|.||...+..
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 999999999999998766 32222 333578899999997632 2 33 33 89999999976444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=199.88 Aligned_cols=267 Identities=15% Similarity=0.199 Sum_probs=209.9
Q ss_pred EEECCCcEEEEeCCCCceEEEEeccC--CCEEEEEEccCCCEEE--EEeCCCcEEEEEcCCC--ceeeeeccCCCCeeEE
Q 005123 161 TGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMV--SGDDGGAIKYWQNNMN--NVKANKSAHKESVRDL 234 (713)
Q Consensus 161 tgs~dg~V~Iwd~~t~~~~~~l~~h~--~~V~sl~~spdg~~L~--sgs~DG~I~vwdl~~~--~~~~~~~~~~~~V~~l 234 (713)
+++....++|||....+....+..|+ -.|.+++|..... |+ +.+.|..|++|.-... ++-..-+.....-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 33344479999988776666655443 3489999987654 44 3456788999975433 2222222233344555
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC-CC
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-KN 313 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-~~ 313 (713)
+......++++++..++|+|||++...+.+.+++|.+.|+++.++-...+|++++..|.|.|..+.++.....|... ..
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence 55556689999999999999999988888899999999999999999999999999999999999998887777644 34
Q ss_pred CeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeeEEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE
Q 005123 314 MVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (713)
Q Consensus 314 ~I~si~fspdg~~L-atgs~Dg~I~IwDl~t~~~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~ 391 (713)
.|.-+.|++..++| .+++.+|.|.+||+.....+..+ +.|..+...|+|+|.++.+|++.+.|..|.+||++......
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 56689999976654 57889999999999977776554 57999999999999889999999999999999998666554
Q ss_pred EEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 392 EIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.+.. +.+...++|.++|.+||. ..|.|..||+.....
T Consensus 246 ~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 246 RLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eeee--cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 4443 568999999999988875 789999999876544
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-18 Score=185.74 Aligned_cols=288 Identities=29% Similarity=0.530 Sum_probs=233.2
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 212 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~v 212 (713)
.....+..|...|.+++|+++++++++++. |+.+++|+..+...+..+..|...|.+++|++++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 445678899999999999999998888886 99999999999888999999999999999999988 5555599999999
Q ss_pred EEcCCCceee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~~~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||...+.... .+..|...+ ...|++++.++++++.|+.+++||+..... +..+..|...|.++.|++++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9988777777 577777775 448999998899999999999999986654 4444567899999999998888888999
Q ss_pred CCcEEEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~ 367 (713)
|+.+.+||+++........ .|...+..+.|.+++..++++ ..|+.+.+|++............ ..+..+.++. +
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~- 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D- 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-
Confidence 9889999999887766665 677789999994232566655 68889999999987733333322 2288999998 7
Q ss_pred CEEEE-EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 368 EYFVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 368 ~~las-gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
..++. +..++.+.+|+.............+ ..+..+.++.++..+++ .++.+++|++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 55555 8899999999997766544443322 78999999999988764 899999999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=186.23 Aligned_cols=289 Identities=21% Similarity=0.308 Sum_probs=218.7
Q ss_pred eEEEEeeCCCCCceEEEEEcc-----CCCEEEEEECCCcEEEEeCCCCceEEEEe-----ccCCCEEEEEEccCC----C
Q 005123 134 KFVHTSLNKNRCSINRVLWTP-----TGRRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHND----N 199 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~sp-----dg~~Latgs~dg~V~Iwd~~t~~~~~~l~-----~h~~~V~sl~~spdg----~ 199 (713)
++.......|+..|..++|+. +-..+|+++.+ .|.||+......+..+. .|+.....++|+-|. -
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 344455678999999999985 23456666544 68888866543333322 366778888997653 4
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEE
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKS 275 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~s 275 (713)
+||+++.-|.|+|.|+.+++....+.+|...|+.|.++|+. ++++++|.|.+||+||+++..++..+- +|.+.|.+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 78889999999999999999999999999999999999976 688999999999999999999988874 69999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEE----------------------------EEccCCCCeEEEEEcCCCCEE
Q 005123 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELC----------------------------SFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~----------------------------~~~~h~~~I~si~fspdg~~L 327 (713)
+.|+.++.+|++++.|..|++|++...+... +...|...|.|+.|- |+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 9999999999999999999999998322100 112355666667664 6789
Q ss_pred EEEECCCeEEEEEC-CCC-------------eeEEEeecCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcCCCCceEE
Q 005123 328 LTASKDQIIKLYDI-RAM-------------KELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 328 atgs~Dg~I~IwDl-~t~-------------~~l~~~~~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
++-+.++.|..|.. +-. ..+.++......|+.+.|+-+ -.+.||.|...|.|++||++.......
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 99888999999986 111 123444445556776665431 467899999999999999987665321
Q ss_pred -Ee--cccCCCeEEEEEcCCCcEEE--EeCCcEEEEec
Q 005123 393 -IH--NVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCR 425 (713)
Q Consensus 393 -~~--~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~ 425 (713)
.+ ......|...+|+.|+.+|. .+|++|--||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 11 12346799999999996664 48999988876
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=181.31 Aligned_cols=238 Identities=15% Similarity=0.258 Sum_probs=186.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc
Q 005123 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 189 V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
..|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|...|++++||+||+.|+++|.|..|++||+.++..+..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 269 HGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 269 h~~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
..+.|..+.|+|... .++++-.+..-.+.++...+....-.. .+....+..|.+.|++|++|...|.+.|+|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999999443 333333344455556554322211111 112233446888999999999999999999999
Q ss_pred CeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---EEEecc-------cCCCeEEEEEcCCCcE
Q 005123 344 MKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNV-------HDNTVWDLAWHPIGYL 412 (713)
Q Consensus 344 ~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---~~~~~~-------h~~~V~~l~~spdg~~ 412 (713)
.+++..++... ..|..+.++- .+++|+.-+.|..|+.|+++.-... ...... ....=.+++|+.+|.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 99999988766 7899999998 8999999999999999998521111 111100 1223457889999988
Q ss_pred EEE---eCCcEEEEecCCC
Q 005123 413 LCS---NDHTTKFWCRNRP 428 (713)
Q Consensus 413 laS---~Dg~v~iWd~~~~ 428 (713)
+|. .-..++||..+..
T Consensus 264 v~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccccceeEEEEecCCc
Confidence 864 6788999987543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=191.54 Aligned_cols=245 Identities=15% Similarity=0.306 Sum_probs=203.8
Q ss_pred eeCCCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEE--Eecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMI--LQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~--l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
++.-.+.+|.+++|.++|. .+++++....+++||+.+.+..+. ..++ ...+.....++++++|++.+..|.|.|..
T Consensus 252 S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 252 SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence 3444578999999999998 899999999999999988765433 3333 35678889999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-ceEEEEEcCCCCEEEEEeCCCc
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
..+++.+..++ ..+.|.+++|+.|++.|++++.+|.|++||++...++..+....+ .-++++.+.++.+||+|+..|.
T Consensus 332 akT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 332 AKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 99998887764 477899999999999999999999999999999988888874322 2356777789999999999999
Q ss_pred EEEEECCC------CceEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEEeecC---CCCeEEEEE
Q 005123 294 VKLWDAKS------GRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGH---RKDVTALAW 362 (713)
Q Consensus 294 I~IwDl~t------~~~~~~~~~h~~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~~~~h---~~~V~sl~f 362 (713)
|.|||.++ .+.+..+......|+++.|++|..+||.++. +..+++..+.+......|... -+.|+|++|
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF 490 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe
Confidence 99999764 3456666667788999999999999998774 567999988876665555433 256899999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
|| ++.++|.|..+|.|.+|.+.
T Consensus 491 SP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 491 SP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cC-CCceEEeecCCCceeeEeec
Confidence 99 89999999999999999874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=197.46 Aligned_cols=271 Identities=15% Similarity=0.326 Sum_probs=218.8
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|..++|-|||..|+.+..| .+.|||...+.....+++|++.|.|++|+.||+.+++|+.|..|.||+-.-...++ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 89999999999988887655 69999999999999999999999999999999999999999999999765444433 4
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.|.+.|.|+.|+|-...|++|+.+ ..-+|..+.....+ .+ ....|.+.+|..||.+|+.|-.||+|.|-+-. ++..
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 789999999999999999998865 47788765533221 11 34578999999999999999999999998644 4444
Q ss_pred EEEc---cCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 306 CSFH---GHKNMVLCVKWNQN-----GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 306 ~~~~---~h~~~I~si~fspd-----g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
..+. +.++.|.+|+|+|. ...+++.....++.+|.+. |+.+..-+.-.-.-.++.+.+ ++.+++.|+.|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDK 244 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCC
Confidence 4443 46789999999985 3678899999999999887 666654444455567888888 899999999999
Q ss_pred cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCC
Q 005123 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNR 427 (713)
Q Consensus 378 ~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~ 427 (713)
.+.+|.- .+ ..+......+..||.++..|++..++ ..||+|..|++-.
T Consensus 245 ~L~~fTR-~G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 245 QLSLFTR-DG-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ceEEEee-cC-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9999964 22 23344444678999999999996664 3999999998744
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-21 Score=209.85 Aligned_cols=281 Identities=19% Similarity=0.283 Sum_probs=228.4
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+.|.+|.+.|.|+.|...|.+|++|+.|..|+||..++..+...+.+|++.|+.++.+.+..++++++.|..|++|.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 56889999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE---Ec-cCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS---LT-GHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~---l~-~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+..+..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+.. ++ .....+.++.|...+..+++++.|+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 99999999999999999999854 778899999999871111111 01 13356778888888889999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
-..|...... .+...+.-+.++.| ..+.+++-.+-.+++|++.++..++.+.+|...+..+.++|.+.....+
T Consensus 340 a~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 340 ARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 9888765311 11112222222222 2456677778889999999999999999999999999999988888899
Q ss_pred EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-eCCcEEEEecCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~Dg~v~iWd~~~~~ 429 (713)
++.||.+.|||+-.+........+ ...+.+.+|+.||..++ + .-|.+.|.......
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999999877766666655 46677889999996665 4 55777777654433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=181.71 Aligned_cols=290 Identities=14% Similarity=0.246 Sum_probs=222.3
Q ss_pred eEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------ceEEEEe-ccCCCEEEEEEccCCCEEEEEeC
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQ-AHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
.+..+.+.+|.+.|++|.|+.++++||+|+.|..++||+++.. +.+.... .|.+.|.|++|...+++|++|..
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 3445678899999999999999999999999999999996532 3333333 35689999999998899999999
Q ss_pred CCcEEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCC
Q 005123 207 GGAIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spd 281 (713)
+++|.+-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||++.... ...+........++.|+|.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999999887766532 335899999999999999999999999999976542 2233334567889999994
Q ss_pred -CCEEEEEeCCCcEEEEECCCCce-EEEE---ccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-EEEeec
Q 005123 282 -KSLLVSGGKDSLVKLWDAKSGRE-LCSF---HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRG 352 (713)
Q Consensus 282 -g~~L~sgs~Dg~I~IwDl~t~~~-~~~~---~~h---~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-l~~~~~ 352 (713)
-.+|++.+..+-+.+||.+.... +... .+. ...-.++.|+++|+.|++--....-.+||+.+.++ +..+.
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D- 284 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD- 284 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-
Confidence 56788888888999999986432 2111 111 22235678999999998877777778889886444 23332
Q ss_pred CC-------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC----------------------CceEEEecccCCCeEE
Q 005123 353 HR-------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE----------------------TPQVEIHNVHDNTVWD 403 (713)
Q Consensus 353 h~-------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~----------------------~~~~~~~~~h~~~V~~ 403 (713)
|. ..|.+++|.. ...+++|+.+-.|++|.+... ...+.++.+|...++.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred CCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 22 3467788864 556999999999999988321 1234567889999999
Q ss_pred EEEcCCCcEEEE--eCCcEEEEecC
Q 005123 404 LAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 404 l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
+.|++...+||| ..+.++||.--
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeecCCcceEeccchhhheeccccc
Confidence 999999999987 78999999743
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=188.03 Aligned_cols=257 Identities=20% Similarity=0.286 Sum_probs=196.8
Q ss_pred EeCCCCceEEEEeccCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEecCC-CEE
Q 005123 171 WNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTD-LKF 243 (713)
Q Consensus 171 wd~~t~~~~~~l~~h~~~V~sl~~spdg--~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~dg-~~L 243 (713)
+|+.+......+..+.+.|++++|+|.. +++++|+..|.|-+||+.+. .-+..+..|...|.+|.|++.+ ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4445555566777789999999999965 47889999999999999532 3445567899999999999955 679
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEccCCCCeEEEEE
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKW 320 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~~h~~~I~si~f 320 (713)
++.|.||+|++-|+++......+. .....+.++.|+.+...++.+..=|.+.+||+++.+. ...+.-|+..|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 999999999999998765433333 2455678888988888888888888999999998665 5666778889999999
Q ss_pred cCC-CCEEEEEECCCeEEEEECCCCee----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC----CCCceE
Q 005123 321 NQN-GNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQV 391 (713)
Q Consensus 321 spd-g~~Latgs~Dg~I~IwDl~t~~~----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~----~~~~~~ 391 (713)
+|. ..+||+++.|++++|||++.... +.....|...|.++.|||.+++ |+|.+.|..|+|||.. ......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccc
Confidence 994 56788999999999999986432 2333459999999999996666 9999999999999983 223233
Q ss_pred EEecccCC----CeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 392 EIHNVHDN----TVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 392 ~~~~~h~~----~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.+...+.. ......|.|+..+++. .-..|.|+|-+..
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 33322221 2445689999988876 5667888876443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=179.42 Aligned_cols=241 Identities=14% Similarity=0.239 Sum_probs=193.8
Q ss_pred CCCCceEEEEEccCC----CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPTG----RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg----~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~ 216 (713)
.|......++|+-|. -+||+++.-|.|+|.|+.++++...+.+|..+|+.|.|.|+. ++|++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 378888899998764 478899999999999999999999999999999999999976 688899999999999999
Q ss_pred CCceeeee---ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----E------------------------E
Q 005123 217 MNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----R------------------------S 265 (713)
Q Consensus 217 ~~~~~~~~---~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~----~------------------------~ 265 (713)
+..++..+ .+|.+.|.++.|+.++.+|++|+.|.+|++|++...+.. . +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99988776 569999999999999999999999999999999732110 0 1
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCc-------------eEEEEccCCCCeEEEEEc--CCCCEEEE
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGR-------------ELCSFHGHKNMVLCVKWN--QNGNWVLT 329 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~-t~~-------------~~~~~~~h~~~I~si~fs--pdg~~Lat 329 (713)
-.-|...|.|+.|. |+++++-+.++.|..|..- -.+ .+.++.-....|+-|.|+ +-.+.||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12366677788887 7899999999999999762 111 122333344556666554 45889999
Q ss_pred EECCCeEEEEECCCCeeE--EEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 330 ASKDQIIKLYDIRAMKEL--ESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l--~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
|...|.|++||++..+.. .++. .....|...+|+. ++.+|+..++|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999999999976652 1222 2245789999998 89999999999999999863
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=189.34 Aligned_cols=250 Identities=17% Similarity=0.316 Sum_probs=204.8
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE--EEEEECCCeEEEE
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK--FCSCSDDTTVKVW 255 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~--Las~s~Dg~I~iw 255 (713)
+-..+.+|++.|+||...+.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|++.++. ||++..+ ++.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 345678999999999999999999999999999999999999998864 5679999999997654 4443333 24443
Q ss_pred Ec---------------------------------CCC----eeEEEEccCCCceEEEEEcCCCCEEEEEeCC---CcEE
Q 005123 256 DF---------------------------------ARC----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVK 295 (713)
Q Consensus 256 Dl---------------------------------~~~----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---g~I~ 295 (713)
+. ... .-+.....|...|+.|.|+..|.+|++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32 100 0122333477889999999999999998764 4599
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
|+++...+...-|....+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|.+++.++ ++.-|+.++.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence 9999887777777777888999999999999988875 5799999998888888887888999999999 7888999999
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
|+.++.||+....+..+.+..|...|++++|++.--++|+ .|+++.||--....+.
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 9999999999888888888899999999999999988876 7899999875544444
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=178.33 Aligned_cols=269 Identities=16% Similarity=0.249 Sum_probs=197.5
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeee--ccCC-CCe
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANK--SAHK-ESV 231 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vwdl~~~~~~~~~--~~~~-~~V 231 (713)
+.+|++.++|.|+|||..+++.+..++++...++.++|..+ ...+.+++.||+|++||+++......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999873 578889999999999999987554433 2233 356
Q ss_pred eEEEEecCCCEEEEEEC----CCeEEEEEcCCCee-EEEE-ccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce
Q 005123 232 RDLSFCRTDLKFCSCSD----DTTVKVWDFARCQE-ERSL-TGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~----Dg~I~iwDl~~~~~-~~~l-~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
.+++...++..+++++. |-.|.+||++..+. +..+ ..|.+.|++|.|+| +.++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67776667777887754 67899999988766 4443 56999999999999 567999999999999999976432
Q ss_pred ---EEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCC------------CCeEEEEEeCCCCC
Q 005123 305 ---LCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHR------------KDVTALAWHPFHEE 368 (713)
Q Consensus 305 ---~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~------------~~V~sl~fsp~~~~ 368 (713)
+.....+.+.|.++.|..++ +.|.+-+...+..+|+++.+.+...+.... ..+... .++.+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKD 279 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcc
Confidence 22223477789999999876 458888899999999999877544433211 111111 2233455
Q ss_pred EEEEEEC-CCcEEEEEcCC------CCceEEEecccCCCeEEEEEcCCCcEE--EEeCCcEEEEecC
Q 005123 369 YFVSGSL-DGSIFHWLVGH------ETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRN 426 (713)
Q Consensus 369 ~lasgs~-DG~I~Iwd~~~------~~~~~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~ 426 (713)
+++.++. -+...++-+.. .+....+..+|...|.++.|.-.+.++ ++.||.+.+|...
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 5555444 56666665532 222333444578889999998766555 4499999999863
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=193.80 Aligned_cols=251 Identities=25% Similarity=0.356 Sum_probs=198.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC--------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
.++..|.+.|+.++|.+....|++++.||.|++|++.. .+.+.++.+|.+.|.|+++..++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 37888999999999999999999999999999999832 2456788999999999999999999999999999
Q ss_pred EEEEEcCCC----------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--CCCceEEEE
Q 005123 210 IKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVD 277 (713)
Q Consensus 210 I~vwdl~~~----------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~ 277 (713)
|+.|++... .....+.+|.+.|+.++++.....|++|+.||+|++|+...... .++.. ....-.+++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965421 24456678999999999999999999999999999999866544 33322 223344555
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE
Q 005123 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 349 (713)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~ 349 (713)
+.... ...++....+.-.++|......+..+.. ....+..+.+++...+.+++..|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 2222222233333444444444444432 124577888999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
...|...++++++.+ ++-+|++++.|+.|++|.+......
T Consensus 527 ~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred eeeccceecceeecC-CCceEEeecCCceeehhhccchhee
Confidence 999999999999999 8999999999999999998655433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=165.23 Aligned_cols=267 Identities=15% Similarity=0.251 Sum_probs=197.4
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCC----------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
..|.+-+|+|.+++|++|..+|.|.+..+++ ...+...++|++.|..++|. .++|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3567778999999999999999999998653 12344558999999999997 46777766 59999998
Q ss_pred cCCCcee----eee----c-----cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC
Q 005123 215 NNMNNVK----ANK----S-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 215 l~~~~~~----~~~----~-----~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd 281 (713)
.+..... ... . ..--.|+++.+.|.++.|+.++.|+.++.||+++++..+++++|.+.|.++..-..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6543220 000 0 11236889999988888888889999999999999999999999999999998666
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEccC----------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGH----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h----------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
...+++|++||+++|||+++++++..+... ..+|-+++. +..+|++|+. ..+.+|.+++.++..+|.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 667999999999999999999998877532 235666665 5668887764 569999999999888776
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEE-EEeCCcEEEE
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLL-CSNDHTTKFW 423 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~l-aS~Dg~v~iW 423 (713)
....|..+.| ..+.+++++..+.|.-|.++. . +...........++..|+-.- .+. |+..+.+.|+
T Consensus 245 -ipa~v~~v~F---~~d~vl~~G~g~~v~~~~l~G-v-l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 -IPARVHLVDF---VDDCVLIGGEGNHVQSYTLNG-V-LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -cccceeEeee---ecceEEEeccccceeeeeecc-E-EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4566888888 456788888888999998743 2 222222223345555565433 222 2355566655
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=186.92 Aligned_cols=288 Identities=17% Similarity=0.287 Sum_probs=221.5
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
-..|...++|.++|++++++|++..||.|.||.--. ......+.-|...|.+++|+.+|.+|++|+.+|.+.+|.+
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 345777799999999999999999999999997332 2335567789999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-----------CCCceEEEEEcCCCCE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----------HGWDVKSVDWHPTKSL 284 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----------h~~~V~sl~~spdg~~ 284 (713)
++++ ...+....+.|..+.+++|+++.+....|+.|.+....+.+...++.+ ..+-.+.++++|.-+.
T Consensus 281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 9998 566677889999999999999999999999999998766554444432 2344678899997778
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcc-----C------CCCeEEEEEcCCCCEEEEEE--------CCC--eEEEEECCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHG-----H------KNMVLCVKWNQNGNWVLTAS--------KDQ--IIKLYDIRA 343 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~-----h------~~~I~si~fspdg~~Latgs--------~Dg--~I~IwDl~t 343 (713)
++..+..+.|.+||+-+.+.+..+.. + ...++.++.+..|.+++|.. .|| .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88888999999999988776665531 1 22467777888899999864 232 578886653
Q ss_pred Cee----E-EEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCC---------ceEEEecccCCCeEEEEEcC
Q 005123 344 MKE----L-ESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHET---------PQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 344 ~~~----l-~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~---------~~~~~~~~h~~~V~~l~~sp 408 (713)
... . .....|+..+...++.+.... .+++++.||.++||-+.... .+..+-.-|...+++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 322 2 222457766666665543333 89999999999999883322 12223334788999999999
Q ss_pred CCcEEE-EeCCcEEEEecCCC
Q 005123 409 IGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 409 dg~~la-S~Dg~v~iWd~~~~ 428 (713)
||.+++ +.|++|.|||....
T Consensus 520 dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 520 DGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CCcEEEEecCCEEEEecCCCh
Confidence 998775 59999999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=170.47 Aligned_cols=260 Identities=18% Similarity=0.284 Sum_probs=193.3
Q ss_pred CCcEEEEeCCCCc--e-EEEEeccCCCEEEEEEccCCCE-EEEEeCC-------CcEEEEEcCCCc---------eeeee
Q 005123 165 SGEFTLWNGQSFN--F-EMILQAHDHAIRSMVWSHNDNW-MVSGDDG-------GAIKYWQNNMNN---------VKANK 224 (713)
Q Consensus 165 dg~V~Iwd~~t~~--~-~~~l~~h~~~V~sl~~spdg~~-L~sgs~D-------G~I~vwdl~~~~---------~~~~~ 224 (713)
|+.|.+.+++... + .+.+..|.+.|..|+-+|-... |+++..+ -.+.||.+.... .+..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 4566666544322 2 2345567888999999986654 4444332 246799876432 22222
Q ss_pred c-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEc-----cCCCceEEEEEcC--CCCEEEEEeCCCcEE
Q 005123 225 S-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWDVKSVDWHP--TKSLLVSGGKDSLVK 295 (713)
Q Consensus 225 ~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~-----~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~ 295 (713)
. .+-+.|.|+.|.|++..|++-. |..|.+|++..... ...+. .+....++-+|+| +++.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 2 3456899999999999988876 77899999977655 33332 2455678889998 77777765 479999
Q ss_pred EEECCCCceEEEEc-cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~-~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
.||+|+.++...++ +|...|..+.|+|+.. +|++|+.||.|+|||.|+- ..+.++.+|...|+++.|++..+.+|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988776664 5778899999999765 5678999999999999864 4688999999999999999999999999
Q ss_pred EECCCcEEEEEcCCCC----------------------------ceEEEecccCCCeEEEEEcCCCcEE-EE--eCCcEE
Q 005123 373 GSLDGSIFHWLVGHET----------------------------PQVEIHNVHDNTVWDLAWHPIGYLL-CS--NDHTTK 421 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~----------------------------~~~~~~~~h~~~V~~l~~spdg~~l-aS--~Dg~v~ 421 (713)
++.|..|.+|....-. ..+..+..|++.|++++|+.-.-++ || .||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 9999999999652210 1233556699999999999877544 55 999998
Q ss_pred EEecC
Q 005123 422 FWCRN 426 (713)
Q Consensus 422 iWd~~ 426 (713)
|=++.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 87654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=173.30 Aligned_cols=247 Identities=22% Similarity=0.388 Sum_probs=191.0
Q ss_pred EEeeCCCCCceEEEEEccCCC-EEEEEECC-------CcEEEEeCCC---------CceEEEEe-ccCCCEEEEEEccCC
Q 005123 137 HTSLNKNRCSINRVLWTPTGR-RLITGSQS-------GEFTLWNGQS---------FNFEMILQ-AHDHAIRSMVWSHND 198 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~-~Latgs~d-------g~V~Iwd~~t---------~~~~~~l~-~h~~~V~sl~~spdg 198 (713)
.+.|..|-+.|..++-+|... .|+|+..+ -.+.||.+.. .+++..+. .+-+.|.||.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345667889999999999664 45555432 2367898653 23334443 455689999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCce-eeee-----ccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEE-ccC
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNV-KANK-----SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSL-TGH 269 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~-~~~~-----~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h 269 (713)
+.|++-. |..|.+|+++.... ...+ ..+....++-+|++ +++.+++. .|+++..||+++.++...+ .+|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9998776 78999999987654 2222 12455677888988 66777665 4789999999987766555 468
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC--
Q 005123 270 GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-- 344 (713)
Q Consensus 270 ~~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~-- 344 (713)
...|.++.|+|+.. +|++|++||.|+|||+|.- ..+.++.+|..+|.++.|++. ..+|++++.|..|.+|-..+-
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 88899999999765 7888999999999999874 467889999999999999994 577889999999999954210
Q ss_pred ---------------------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 345 ---------------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 345 ---------------------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..+.++..|.+.|++++||..+.-+||+-+.||++.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12456778999999999999888899999999999987764
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=167.96 Aligned_cols=275 Identities=16% Similarity=0.293 Sum_probs=198.8
Q ss_pred ceEEEEEcc---CCCEEEEEEC----CCcEEEEeC--CCCceEEEE-eccCCCEEEEEEccCCC-----EEEEEeCCCcE
Q 005123 146 SINRVLWTP---TGRRLITGSQ----SGEFTLWNG--QSFNFEMIL-QAHDHAIRSMVWSHNDN-----WMVSGDDGGAI 210 (713)
Q Consensus 146 ~V~~v~~sp---dg~~Latgs~----dg~V~Iwd~--~t~~~~~~l-~~h~~~V~sl~~spdg~-----~L~sgs~DG~I 210 (713)
.+.++.|+. ...+||.|+. .+.|.|..+ ++++.+..- ..|...++.+.|.|+.+ +||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 466677773 2346777764 355666543 334333222 35788999999999863 555554 579
Q ss_pred EEEEcCCCc--ee--ee-----eccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCe---eEEEEccCCCceEEEE
Q 005123 211 KYWQNNMNN--VK--AN-----KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVD 277 (713)
Q Consensus 211 ~vwdl~~~~--~~--~~-----~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~---~~~~l~~h~~~V~sl~ 277 (713)
++|.+...+ .. .. ...+...++++.|+. |-++|.+++-|.++.|||++++. ....+.+|...|..|+
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999987432 11 11 133556899999987 44788899999999999998863 3666788999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceEEEEcc---CCCCeEEEEEcC-CCCEEEEEECC-CeEEEEECCC-CeeEEEe
Q 005123 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQ-NGNWVLTASKD-QIIKLYDIRA-MKELESF 350 (713)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~---h~~~I~si~fsp-dg~~Latgs~D-g~I~IwDl~t-~~~l~~~ 350 (713)
|...+ +.|++++.||.|++||+|..+.-..+.. .......++|+. |-+++|+-..| ..|.|.|+|. ...+..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99854 4899999999999999998664443322 245688899988 56788876554 4799999986 4568899
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc-----eEEEecccCCCeEEEEEcCC-CcEEEE-eCCcEEEE
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----QVEIHNVHDNTVWDLAWHPI-GYLLCS-NDHTTKFW 423 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~-----~~~~~~~h~~~V~~l~~spd-g~~laS-~Dg~v~iW 423 (713)
++|.+.|+.|+|.|.....|+++++|..+.|||+..-.. .+... ...++|+.|.|++. ..+++. .++++.|-
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 999999999999998899999999999999999964332 11112 24678999999954 355543 55555543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=172.07 Aligned_cols=243 Identities=19% Similarity=0.242 Sum_probs=191.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.|+.|.+.|+|+.|-.+++ |.+|...|.|++|++.+......+. .+...|+.+...++ +.|.+-++|..+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 3558999999999998876 9999999999999999988887787 56788998888876 6778888999999998765
Q ss_pred Cceeeee-----------------------------------------------------ccCCCCeeEEEEec-CCC--
Q 005123 218 NNVKANK-----------------------------------------------------SAHKESVRDLSFCR-TDL-- 241 (713)
Q Consensus 218 ~~~~~~~-----------------------------------------------------~~~~~~V~~l~fs~-dg~-- 241 (713)
...+..- ....+.+.+..+.- +++
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 3211100 01112344444322 222
Q ss_pred EEEEEECCCeEEEEEcCCCeeE----------EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ce--EEE
Q 005123 242 KFCSCSDDTTVKVWDFARCQEE----------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RE--LCS 307 (713)
Q Consensus 242 ~Las~s~Dg~I~iwDl~~~~~~----------~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~--~~--~~~ 307 (713)
+|++|.++|.|.+||+.++..+ .....|...|.++.+.+..+.=++|+.+..+..|+++.. .. ..+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 3667888999999999887433 334568899999999987667788888889999988642 21 122
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+...+-.|..+.+-+|++.+|+++.|+.||||..++...+..++-|...|.+++|++ +..++|+++.|++|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 222345688899999999999999999999999999999999999999999999999 7899999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=172.57 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=188.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC--------C--------CceEEEEeccCCCEEEEEEccCCCE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--------S--------FNFEMILQAHDHAIRSMVWSHNDNW 200 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--------t--------~~~~~~l~~h~~~V~sl~~spdg~~ 200 (713)
...|..|...|++|.|+++|++||+|+.+|.|.+|... + ....+.+.+|.+.|..++|++|+.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 45788999999999999999999999999999999755 2 3345677889999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-------------
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------------- 267 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~------------- 267 (713)
+++++.|..+++||+..+.+...+..|...|..++|.+-+.++++-+.|...+++++.....+....
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 9999999999999999999999999999999999999999999999999877777765433222111
Q ss_pred ------cCC----CceEEEEEcCCCCEEEEEeC----CC-----cEEEEECCC-CceEEEEccCCCCeEEEEEcC-----
Q 005123 268 ------GHG----WDVKSVDWHPTKSLLVSGGK----DS-----LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ----- 322 (713)
Q Consensus 268 ------~h~----~~V~sl~~spdg~~L~sgs~----Dg-----~I~IwDl~t-~~~~~~~~~h~~~I~si~fsp----- 322 (713)
.|. .-...++|+|+|.+|++.+. ++ +.++|+-+. .+.+..+......+..+.|++
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 011 12456789999998887642 22 234554332 222333333344444444433
Q ss_pred -------------CCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 323 -------------NGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 323 -------------dg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
-+-.+|+++ ...|+|||..+.+.+.... .|-..|+.++|+. ++.+|+..|.||...+..++..+
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 122344555 4579999999888776554 5788999999998 89999999999998887775544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=175.31 Aligned_cols=245 Identities=20% Similarity=0.269 Sum_probs=190.6
Q ss_pred EEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCe
Q 005123 181 ILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTT 251 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~ 251 (713)
.+.+|++.|..++|+|- +..||+|++|.+|.||++..+ +.+..+.+|...|..+.|++.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999995 567889999999999998654 3466778999999999999965 67899999999
Q ss_pred EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCC-CeEEEEEcCCCCEEEEE
Q 005123 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~-~I~si~fspdg~~Latg 330 (713)
|.+||+.+++.+.++. |.+-|.+++|+.||.+|++++.|.+|+|||.++++.+..-.+|.+ .-..+.|-.+++++-||
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 999999999999999999999999999999999999988776665 34556677788855555
Q ss_pred E---CCCeEEEEECCCCeeE---EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeE
Q 005123 331 S---KDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVW 402 (713)
Q Consensus 331 s---~Dg~I~IwDl~t~~~l---~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~ 402 (713)
. +++.+-|||-.+.+.- .++. ..+.|.---|.++.+-+.++|-.|+.|+.|.+..+...+..+.. ....-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 4 5778999998776542 3333 33456666677744445566677999999999877755555433 234566
Q ss_pred EEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 403 DLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 403 ~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
.+.|-|..-+=++.....|+|.+..
T Consensus 314 G~g~mPKRGl~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 314 GMGFMPKRGLDVSKCEIARFYKLHE 338 (472)
T ss_pred cccccccccccchHHHHHHHHHhhc
Confidence 7778777655555555566665533
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-18 Score=171.95 Aligned_cols=205 Identities=24% Similarity=0.441 Sum_probs=165.7
Q ss_pred eeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC-------eeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCc
Q 005123 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSL 293 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~-------~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~ 293 (713)
.+.+|...|.+++|++ ++..||+||+|.+|.||++-.. +.+..+.+|...|..|.|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4578999999999999 5577999999999999998543 346778899999999999994 568999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC-CeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-~V~sl~fsp~~~~~las 372 (713)
|.|||+.+++.+.++. |...|.+++|+.||.+|++.+.|+.|+|||.++++.+.+-.+|.+ .-..+.|-. ++.++.|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeee
Confidence 9999999999999888 999999999999999999999999999999999999988888875 334455655 5664444
Q ss_pred EE---CCCcEEEEEcCCCCceEEEec-ccCCCeEEEEEcCCC--cEEEE-eCCcEEEEecCCCC
Q 005123 373 GS---LDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIG--YLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs---~DG~I~Iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg--~~laS-~Dg~v~iWd~~~~~ 429 (713)
|- ++..+.+||-.+-...+.+.. ...+.|.---|++|. .+||+ .|+.||.|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 43 367899999866554433322 234556666677777 55677 99999999987665
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-16 Score=171.06 Aligned_cols=266 Identities=11% Similarity=0.107 Sum_probs=180.8
Q ss_pred EEEECCCcEEEEeCCC-Cc--eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC-Ccee--eeeccCCCCee
Q 005123 160 ITGSQSGEFTLWNGQS-FN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM-NNVK--ANKSAHKESVR 232 (713)
Q Consensus 160 atgs~dg~V~Iwd~~t-~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~-~~~~--~~~~~~~~~V~ 232 (713)
++...++.|++||+.+ ++ .+..+. +.+....+++++++++|++++ .++.|.+|+++. +... ... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 3446789999999964 33 334443 346678899999999987764 578899999873 3322 221 2334567
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEE
Q 005123 233 DLSFCRTDLKFCSCSD-DTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELC 306 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~~~ 306 (713)
.++|++++++|++++. ++.|.+||+++.. .+..+. +.....+++++++++++++++ .++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999999888765 8899999996422 222222 234567889999999886555 56899999998643221
Q ss_pred E-----Ec-cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC--C--eeEEEeecC------CCCeEEEEEeCCCCCE
Q 005123 307 S-----FH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA--M--KELESFRGH------RKDVTALAWHPFHEEY 369 (713)
Q Consensus 307 ~-----~~-~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t--~--~~l~~~~~h------~~~V~sl~fsp~~~~~ 369 (713)
. .. ........++|++++++|++++. +++|.+||++. + +.+..+... ......+.++| ++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCE
Confidence 1 11 12344678999999999988876 89999999973 2 334443322 12334688999 6777
Q ss_pred EEEEE-CCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 370 FVSGS-LDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 370 lasgs-~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
|+++. .++.|.+|+++.......+... -......++|++|+.+|. + .+++|.||+++...
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 77664 4789999999665433322211 112456889999996664 3 58999999987544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-16 Score=160.65 Aligned_cols=237 Identities=14% Similarity=0.246 Sum_probs=187.9
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC--CcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--G~I~vwdl~~~~ 219 (713)
+....|+.+.|+.|...|.+|+.|| .++|+.+..............|...-|+ ..++|..+.+ ..++++++..+.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 3455688888999999999999998 7889877755532222223345555564 4566665554 458999988887
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc---CCCceEEEEEcCCCCEEEEEe--CCCcE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HGWDVKSVDWHPTKSLLVSGG--KDSLV 294 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~---h~~~V~sl~~spdg~~L~sgs--~Dg~I 294 (713)
.+..+ .....|.++.++ .++|+++-.+. |+|||+++.+.+.++.. +...+.+++++..+.+|+.-+ ..|.|
T Consensus 80 ~ICe~-~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEI-FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEE-ecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 77765 356788888885 45677776664 99999999998887764 344577777777777888743 36889
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeEEEeecCC--CCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~-I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~~~la 371 (713)
.|||+.+-+.+..+..|++.+.+++|+++|.+||++++.|+ ||||++.+++.+.+|+.-. ..|.+|+|++ +..+|+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLA 234 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEE
Confidence 99999999999999999999999999999999999999996 7999999999999997433 4689999999 789999
Q ss_pred EEECCCcEEEEEcCC
Q 005123 372 SGSLDGSIFHWLVGH 386 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~ 386 (713)
+.|+.++|+||.+++
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 999999999998854
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-17 Score=181.88 Aligned_cols=262 Identities=19% Similarity=0.267 Sum_probs=196.5
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce--e----eeeccCCCCeeEEEEec
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV--K----ANKSAHKESVRDLSFCR 238 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~--~----~~~~~~~~~V~~l~fs~ 238 (713)
+.++||+++....-...-.....|+|++|++.. ++|+.|+.+|.|.+||+..+.. . .....|...|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998874433334457899999999965 6778889999999999987654 2 22246888999999987
Q ss_pred CCCE--EEEEECCCeEEEEEcCCCeeEE------EEc------cCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC--
Q 005123 239 TDLK--FCSCSDDTTVKVWDFARCQEER------SLT------GHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS-- 301 (713)
Q Consensus 239 dg~~--Las~s~Dg~I~iwDl~~~~~~~------~l~------~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t-- 301 (713)
+..- |++++.||.|..|+++.-.... ... .....+++++|.+ +-+.+++|+++|.|..-+...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 6544 9999999999999886432210 001 1234688999988 567899999999988743322
Q ss_pred -Cc-----eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 302 -GR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 302 -~~-----~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.. ....+..|.+.|+++.++|=+..++..+.|.+|+||... ....+..+..+...|++++|||....+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 21 123455688999999999966555555559999999988 67778888888888999999998888999999
Q ss_pred CCCcEEEEEcCCCCc-eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 375 LDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.||.|.|||+..... .+.....+....+.+.|++++.+|+. ..|++.+|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999954332 22233334667778889998988765 779999999853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=165.84 Aligned_cols=232 Identities=16% Similarity=0.293 Sum_probs=184.9
Q ss_pred CCCceEEEEEc-------cCCCEEEEEECCCcEEEEeCCCCceEEEEec--cC---CCEEEEEEccCCCEEEEEeCCCcE
Q 005123 143 NRCSINRVLWT-------PTGRRLITGSQSGEFTLWNGQSFNFEMILQA--HD---HAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 143 H~~~V~~v~~s-------pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~--h~---~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
....|...+|- |+..++|+.+.+.-|++||.-++++...+.. |- .+..+++|++||..|++|. ...|
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI 181 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence 34567777775 5778999999999999999999998877754 32 2456899999999998876 5889
Q ss_pred EEEEc-CCCceee---e----eccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC
Q 005123 211 KYWQN-NMNNVKA---N----KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 211 ~vwdl-~~~~~~~---~----~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd 281 (713)
+|||+ +.+.... + ..+..+-|.+++|+|.. +.+++++...++-|+.-.....+..+.+|.+.|+.+.|.++
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99998 4443211 1 12346678999999965 48999999999999988888899999999999999999999
Q ss_pred CCEEEEEeC-CCcEEEEECCCC-ceEEEEccCCC-CeEEE--EEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeecCCC
Q 005123 282 KSLLVSGGK-DSLVKLWDAKSG-RELCSFHGHKN-MVLCV--KWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRK 355 (713)
Q Consensus 282 g~~L~sgs~-Dg~I~IwDl~t~-~~~~~~~~h~~-~I~si--~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~ 355 (713)
|+.|++|+. |-.|.+||+|.. ..+..+..|.. .-..| ...+++++|++|+.||.|++||+++ ++.+..+..+..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 999999875 778999999974 34555655544 33334 4467899999999999999999998 777888888999
Q ss_pred CeEEEEEeCCCCCEEEEEECC
Q 005123 356 DVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~D 376 (713)
.|+.++++| .--++++++..
T Consensus 342 ~vNgvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNP-IMPILATSSGQ 361 (406)
T ss_pred cccceecCc-ccceeeeccCc
Confidence 999999999 56666666643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=185.14 Aligned_cols=287 Identities=17% Similarity=0.308 Sum_probs=210.7
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc---CCCEEEEEEcc--CCCEEEEEeCCCcEEEEEc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSH--NDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~sp--dg~~L~sgs~DG~I~vwdl 215 (713)
.+....-..+.|++-...++++...-.|+|||.+.++....+..+ ...|+.+++.. |..+|++++.||.|+||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344446778899999999999998889999999998887777654 45688888865 3468899999999999973
Q ss_pred CCC-----ceeeeecc-------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcC-C
Q 005123 216 NMN-----NVKANKSA-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHP-T 281 (713)
Q Consensus 216 ~~~-----~~~~~~~~-------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~sp-d 281 (713)
... +++..... ..+.-.-++|.....+|+++++-..|+|||..+...+..+. +....|+++.-+- .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 221 22222211 11111345676666677777778899999998877766654 3445677776654 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCc---eEEEEccCCCC--eEEEEEcCCCC-EEEEEECCCeEEEEECCCCee--EEEeecC
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNM--VLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKE--LESFRGH 353 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~~~--I~si~fspdg~-~Latgs~Dg~I~IwDl~t~~~--l~~~~~h 353 (713)
|+.|++|..||.|++||.+... .+...+.|... |..+.+.+.|- .|++|+.||.|++||++.... ...+..|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 6899999999999999998643 46667778887 99999988654 499999999999999997422 1222223
Q ss_pred ---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE-----EecccCCCeEEEEEcCCCcEEEE--eCCcEEEE
Q 005123 354 ---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-----IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFW 423 (713)
Q Consensus 354 ---~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~-----~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iW 423 (713)
.+.++++..+. ...+||+|+. +.|+||++........ +.....+.+.|++|+|...++|. .|.+|.||
T Consensus 1301 ~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 23589999998 8899999998 8999999854332111 11123467899999999977753 99999999
Q ss_pred ecCCCC
Q 005123 424 CRNRPG 429 (713)
Q Consensus 424 d~~~~~ 429 (713)
......
T Consensus 1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred ecCCcC
Confidence 876543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=179.64 Aligned_cols=239 Identities=15% Similarity=0.292 Sum_probs=194.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+|++|++.|+|++|+.||+++|+|+.|..|.||+.+-...+ -..|.+.|.|+.|+|-...|++++- ...-+|..+
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~ 122 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPE 122 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcch-hhccccChh
Confidence 3579999999999999999999999999999999985532222 1358999999999999999998875 457789776
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEEEEEcCCC-----CEEEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTK-----SLLVSG 288 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~sl~~spdg-----~~L~sg 288 (713)
...+.+. .....|.+++|..||.+|+.|-.||+|.|-+-. ++....+. +..+.|.+|+|+|.. ..+++.
T Consensus 123 qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 123 QKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 6554432 345678999999999999999999999998753 33333333 467889999999843 578888
Q ss_pred eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
....++.+|.+. |+.+.+-+...-.-.|+.+-++|++++.|+.|+.+.+|-. .|-.+.++...+.+|++++..| ++.
T Consensus 200 DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~P-NsQ 276 (1081)
T KOG1538|consen 200 DWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKP-NSQ 276 (1081)
T ss_pred eccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEcc-CCc
Confidence 888889988876 5555544444556788999999999999999999999974 4777888877889999999999 899
Q ss_pred EEEEEECCCcEEEEEc
Q 005123 369 YFVSGSLDGSIFHWLV 384 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~ 384 (713)
.++.|+.||+|..|++
T Consensus 277 ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEEEEccCeeehhhh
Confidence 9999999999999876
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=160.90 Aligned_cols=239 Identities=16% Similarity=0.323 Sum_probs=182.8
Q ss_pred eCCCCCceEEEEEccCCC-----EEEEEECCCcEEEEeCCCCc--e--EEEE-----eccCCCEEEEEEcc-CCCEEEEE
Q 005123 140 LNKNRCSINRVLWTPTGR-----RLITGSQSGEFTLWNGQSFN--F--EMIL-----QAHDHAIRSMVWSH-NDNWMVSG 204 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~-----~Latgs~dg~V~Iwd~~t~~--~--~~~l-----~~h~~~V~sl~~sp-dg~~L~sg 204 (713)
-..|.-+++.+.|.|+.+ +|||++ ..++||.+...+ . ...+ ..+...+++..|+. |-++|.++
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 357888999999999873 455544 379999876422 1 1111 23456799999987 45788899
Q ss_pred eCCCcEEEEEcCCC---ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccC---CCceEEEE
Q 005123 205 DDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDVKSVD 277 (713)
Q Consensus 205 s~DG~I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h---~~~V~sl~ 277 (713)
+-|-+..|||++++ .+...+..|...|.+|+|...+ ..||+++.||.||+||++..+....+... ......++
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 99999999999986 3567778999999999999865 56899999999999999886654444322 45688899
Q ss_pred EcC-CCCEEEEEeCC-CcEEEEECCC-CceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCee------E
Q 005123 278 WHP-TKSLLVSGGKD-SLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE------L 347 (713)
Q Consensus 278 ~sp-dg~~L~sgs~D-g~I~IwDl~t-~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~------l 347 (713)
|++ |-+++++-..| ..|.|.|+|. ...+.++.+|.+.|+.|+|.| ....|++++.|..+.|||+...-. +
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 998 55677765554 5699999997 456788999999999999999 567899999999999999975322 2
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEE
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iw 382 (713)
..+. -...|..|.|++...++|+.+... ++.|.
T Consensus 330 lay~-a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 330 LAYT-AGGEVNQIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred hhhh-ccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence 2333 567899999998778888877644 44443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=176.18 Aligned_cols=260 Identities=13% Similarity=0.269 Sum_probs=192.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEE-c-------cCCCEEEEEeCCCcEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW-S-------HNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~-s-------pdg~~L~sgs~DG~I~vw 213 (713)
.|...|.|+.|+.+...+.+++.+ .+.+|+..+......+..-+..|....+ - ...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 567778899999888766666544 5555543322222222222222211111 0 123578889999999988
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+ ..+++...+..|.+.|.+-.|++||.-|+++++||.|++|.- ++-...++.-....|.|++|.|+.+.++.+. .+.
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 6 456677777899999999999999999999999999999983 4433344444667899999999887776654 367
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
+.|=.+.-...+..++.|++-|.++.|++..++|++|++|-..+|||.. |..+..-..|+..|++++|+| + ..++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeee
Confidence 8888887777788899999999999999999999999999999999976 777888888999999999999 4 666666
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEE
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTK 421 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~ 421 (713)
|.+ +++ +.....+.|..++|++||..++. ..|.+.
T Consensus 245 S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 245 SYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 543 333 33345688999999999976654 444443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=161.40 Aligned_cols=232 Identities=16% Similarity=0.266 Sum_probs=181.6
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MN 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~ 218 (713)
-..+|+|.+|+.|...+|++..+..|.||.... .+..+++..|+..|++|+|++..+.|++++.|..-+||... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 456899999999999999999999999998655 45678899999999999999999999999999999999983 33
Q ss_pred --ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----EEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 219 --NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 219 --~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~----~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+....+..++..++++.|++.++.|++++.-+.|.||-++....- ..-+.+.+.|++++|++++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 334445678899999999999999999999999999988654321 12234667899999999999999999999
Q ss_pred cEEEEECC-----C-------------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecC
Q 005123 293 LVKLWDAK-----S-------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGH 353 (713)
Q Consensus 293 ~I~IwDl~-----t-------------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h 353 (713)
+++||..- + |..+.++....+.|..+.|+++|+.|+-.+.|..|.+-|..... .+.....-
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99999541 1 12233333456789999999999999999999999999987654 23333333
Q ss_pred CCCeEEEEEeCCCCCEEEEEECC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~D 376 (713)
.-+..++.|-. +..++.++.|
T Consensus 249 ~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeec--CCceeecCCC
Confidence 35566666653 3334444444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-17 Score=179.02 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=168.6
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~ 241 (713)
+..|+|||..... ...+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.... .........++|++|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987655 55677788889999999999999877643 3699999988764332 22233445789999999
Q ss_pred EEEEEE-CCCeEEEE--EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceEEEEccCCCCeE
Q 005123 242 KFCSCS-DDTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNMVL 316 (713)
Q Consensus 242 ~Las~s-~Dg~I~iw--Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~-~~~~~~~~h~~~I~ 316 (713)
.|+.++ .+|.+.|| |+.+++ ...+..+...+.+++|++|++.|+.++ .++...||+++.. .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 57765555 665554 445566667788999999999877665 5678888876432 222333 3333 4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC-CCCceEEEec
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG-HETPQVEIHN 395 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~-~~~~~~~~~~ 395 (713)
++.|++||++|++.+.++ |.+||+.+++.......+ ...++.|+| ++++|+.++.++.+.+|++. ........+.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 678999999999887765 666999988754333222 345788999 78899999999988888763 2233445555
Q ss_pred ccCCCeEEEEEcCC
Q 005123 396 VHDNTVWDLAWHPI 409 (713)
Q Consensus 396 ~h~~~V~~l~~spd 409 (713)
.|.+.+.+.+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 77888999999974
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-18 Score=176.96 Aligned_cols=289 Identities=21% Similarity=0.326 Sum_probs=222.9
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccC--CCEEEEEeCCCcEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spd--g~~L~sgs~DG~I~v 212 (713)
+...|.+|.+.|+.|.|+..|+.|++|+.|..|.+||..+.+....+ .+|...|.-..|.|. ...|++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45679999999999999999999999999999999999887766555 578888888888774 478999999999999
Q ss_pred EEcCCCc-e--eeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc---cCCC---ceEEEEEcCCC
Q 005123 213 WQNNMNN-V--KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGW---DVKSVDWHPTK 282 (713)
Q Consensus 213 wdl~~~~-~--~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~---~V~sl~~spdg 282 (713)
-.+.... + ...+..|.+.|..++.-++. ..|.+++.|+.|.-+|++.......+. .+.. ...+|+.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8765432 2 33446788999999998876 458999999999999998765433332 2223 56788888855
Q ss_pred C-EEEEEeCCCcEEEEECCCCce------EEEEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C---
Q 005123 283 S-LLVSGGKDSLVKLWDAKSGRE------LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--M--- 344 (713)
Q Consensus 283 ~-~L~sgs~Dg~I~IwDl~t~~~------~~~~~------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t--~--- 344 (713)
. .+++++.|-.+++||.+.-.. +.++. .....|++++|+.++.-|+++..|-.|++|.-.. +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4 899999999999999875322 22221 2345699999998887788888888899995332 2
Q ss_pred -------eeE-EEeecCCC--CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 345 -------KEL-ESFRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 345 -------~~l-~~~~~h~~--~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
..+ ..+++|.. .|..+-|---...++++||+-|.|.||+..+.. ++.+..+....|+||.-+|---+||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCCCchhh
Confidence 122 33788864 577777643268899999999999999986655 4455555555899999999998888
Q ss_pred E--eCCcEEEEec
Q 005123 415 S--NDHTTKFWCR 425 (713)
Q Consensus 415 S--~Dg~v~iWd~ 425 (713)
+ -|..||||.-
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 6 8999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-15 Score=163.27 Aligned_cols=239 Identities=9% Similarity=0.130 Sum_probs=164.2
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCC-Cce--EEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCc
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQS-FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t-~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~~~ 219 (713)
+....+++++++++|++++ .++.|.+|++.. ++. +.... .......++|++++++|++++. ++.|.+|++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567889999999988765 478899999863 332 22222 2345778999999999988764 7899999997432
Q ss_pred ----eeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEE-----Ec-cCCCceEEEEEcCCCCEEEEE
Q 005123 220 ----VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-----LT-GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 220 ----~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~-----l~-~h~~~V~sl~~spdg~~L~sg 288 (713)
.+..+ .......+++++++++++++++ .++.|++||+++...+.. .. ........++|++++++|+++
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 12211 2234567788999999886655 569999999976332211 11 123456789999999999888
Q ss_pred eC-CCcEEEEECCC--Cc--eEEEEccC------CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCee----EEEeec
Q 005123 289 GK-DSLVKLWDAKS--GR--ELCSFHGH------KNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKE----LESFRG 352 (713)
Q Consensus 289 s~-Dg~I~IwDl~t--~~--~~~~~~~h------~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~~~----l~~~~~ 352 (713)
+. +++|.+||++. ++ .+.++... ......+.|+|++++|+++.. ++.|.+||+..... +..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 32 23333211 123346889999999998864 68999999864332 222221
Q ss_pred CCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCC
Q 005123 353 HRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHE 387 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~ 387 (713)
......++|++ ++++|+++. .+++|.+|+++..
T Consensus 273 -~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 273 -ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -cccCCceEECC-CCCEEEEEEccCCcEEEEEEcCC
Confidence 23456889999 566666555 5899999998643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=152.06 Aligned_cols=231 Identities=17% Similarity=0.225 Sum_probs=179.3
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCC----------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
.|.+-+|++.+++|++|+.+|.|.++.+++- ..+....+|+..|..++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4556689999999999999999999987531 2344557899999999997 44566665 599999987
Q ss_pred CCCeeE------EEEc-------cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCC
Q 005123 258 ARCQEE------RSLT-------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324 (713)
Q Consensus 258 ~~~~~~------~~l~-------~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg 324 (713)
+..... ..+. ..--.|+++.+.|..+-|+.++.|+.++.||+++|+..+++++|.+.|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 543221 1110 112358999999988777788899999999999999999999999999999985555
Q ss_pred CEEEEEECCCeEEEEECCCCeeEEEeecC----------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 325 NWVLTASKDQIIKLYDIRAMKELESFRGH----------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 325 ~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
..|++|++||++||||+++.+++..+... ..+|-+++. +++++++|+. -.+.+|+++..+....+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 66999999999999999999998877532 235677775 5667777654 489999998776544443
Q ss_pred cccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 395 NVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 395 ~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
. ...|..+.|..|..++++..++|.-|.++.
T Consensus 245 i--pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 245 I--PARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred c--ccceeEeeeecceEEEeccccceeeeeecc
Confidence 2 567889999999888888899999998754
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=177.44 Aligned_cols=251 Identities=20% Similarity=0.303 Sum_probs=189.2
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC--------CceeeeeccCCCCeeEEEEecCCCEEEEEECC
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 249 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~--------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D 249 (713)
...++..|.+.|+.++|.+....|++++.||+|++|++.. -+.+.++.+|.+.|.|+++..++..+++++.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3446677889999999999999999999999999999832 14567789999999999999999999999999
Q ss_pred CeEEEEEcCC----------CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC--CCCeEE
Q 005123 250 TTVKVWDFAR----------CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH--KNMVLC 317 (713)
Q Consensus 250 g~I~iwDl~~----------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h--~~~I~s 317 (713)
|+|+.|++-. ......+.+|.+.|+.++++.....|++++.||+|++|+...... ++|... .+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 9999996531 123456778999999999999999999999999999999876554 334322 223445
Q ss_pred EEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecC-------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 318 VKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGH-------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 318 i~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
+.+-... ...++...-+.--++|......+..+... ...+..+.+++ +..+.+++..|+.|+++|..++..
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceeccccccccc
Confidence 5554332 22333333333344444444444444321 13477888998 779999999999999999987775
Q ss_pred eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 390 QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
.... .+|...|+++++.++|.++.+ .|+.+++|.++.....
T Consensus 524 l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 524 LHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred chhe-eeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 5544 468999999999999988865 9999999998655443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=175.98 Aligned_cols=218 Identities=14% Similarity=0.149 Sum_probs=160.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEE-
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW- 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vw- 213 (713)
.+..|...|.+.+|||||++|++++.+ ..|++||+.+++... +........+++|++||+.|++++ .+|.+.||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 456788899999999999999987754 369999998875432 222233445789999999888764 67876665
Q ss_pred -EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 -QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 -dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
|+.+++.. .+..+...+.+.+|++|++.|+.++ .++...||++... .....+ .+.. .++.|++|+++|++++.
T Consensus 277 ~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 277 MGANGGTPS-QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EECCCCCeE-eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 56555543 4455666788999999999877655 5778888876432 222223 3333 46789999999988887
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeeEEEeecCCCCeEEEEEeC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl--~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
++ |.+||+.+++........ ...+++|+|||++|++++.++.+.+|++ .+++.+..+..|.+.+...+|+|
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 55 666999988755433222 3467889999999999999998888876 35778888888888899999998
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=156.52 Aligned_cols=236 Identities=15% Similarity=0.216 Sum_probs=184.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC--CeEEEEEcCCCeeE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE 263 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D--g~I~iwDl~~~~~~ 263 (713)
...+..+.|..|...|.+|+.|| .++|+.+..............|..+-|+ ..++|..+.+ +.++++++++...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577778998888999999888 5777776655433333334455556665 4455555443 46999999988888
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC---CCCeEEEEEcCCCCEEEEE--ECCCeEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---KNMVLCVKWNQNGNWVLTA--SKDQIIKL 338 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h---~~~I~si~fspdg~~Latg--s~Dg~I~I 338 (713)
..+. ....|.+|.++ .++|+++-++. |+|||+++.+.+.++... ...+.+++++.++.||+.- ...|.|.|
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7776 56789999998 45677776654 999999999998887643 3446666777777799853 35789999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-EEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE-
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS- 415 (713)
||+.+.+.+..+..|++.+-+++|++ ++.+|||+|+.|+ |+||.+.++.++.++..+-. ..|.+|+|++++.+|+.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999999999999999999999999 8999999999997 89999999988888776533 46899999999988864
Q ss_pred -eCCcEEEEecCCCC
Q 005123 416 -NDHTTKFWCRNRPG 429 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~ 429 (713)
+.++|.||.++...
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 88999999997654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=160.37 Aligned_cols=196 Identities=19% Similarity=0.287 Sum_probs=159.8
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-- 309 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-- 309 (713)
..++|+.++..|++++.||++|||+..+...+.....|...|.+++|++|+++|++.+.| ..+|||++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999988888888888899999999999999999999999 89999999997766554
Q ss_pred cCCCCeEEEEEcCCC---CEEE--EEECCCeEEEEECCCCee-----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 310 GHKNMVLCVKWNQNG---NWVL--TASKDQIIKLYDIRAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 310 ~h~~~I~si~fspdg---~~La--tgs~Dg~I~IwDl~t~~~-----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
..+..+..+.|+.|+ .+++ ....-+.|+.||+..++. .+....-...|++++.+. ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 233456778888876 3333 333455677777654332 122222345799999998 89999999999999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
.|++..+-.....+...|...|+.|.|+||.+.+++ .|..+.|..+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999998888777888899999999999999988865 89999999886533
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=171.21 Aligned_cols=257 Identities=18% Similarity=0.286 Sum_probs=184.7
Q ss_pred EccCCCEEEE--EECCCcEEEEeCCCC-ceE----EEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc----
Q 005123 152 WTPTGRRLIT--GSQSGEFTLWNGQSF-NFE----MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN---- 219 (713)
Q Consensus 152 ~spdg~~Lat--gs~dg~V~Iwd~~t~-~~~----~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~---- 219 (713)
|+.+.+++|+ ++..|.|-||++..- ++- -.+ .....|+.+.|.| |...|+++++||.|+||.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4445566664 466789999997752 221 111 1356799999998 66799999999999999987653
Q ss_pred ---eeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 220 ---VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 220 ---~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
....+..|.+.|++|.|++- .+.|++++.|-+|++||+.+.+....+.+|.+.|.+++|+++|+.+++.++||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34556789999999999984 47799999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceE-EEEccC-CCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCe--eEEEeecCC-CCeEEEEEeCCC
Q 005123 296 LWDAKSGREL-CSFHGH-KNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMK--ELESFRGHR-KDVTALAWHPFH 366 (713)
Q Consensus 296 IwDl~t~~~~-~~~~~h-~~~I~si~fspdg~~Latgs~Dg----~I~IwDl~t~~--~l~~~~~h~-~~V~sl~fsp~~ 366 (713)
+|+-++++.. +.-++- ...-..|.|.-||++|++.+.|. .|.+||..+.. .+.+..... -.+.--.+..|.
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 9999876542 222211 12345677888999999877654 68888876533 232221111 112222345556
Q ss_pred CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe--EEEEEcCC
Q 005123 367 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV--WDLAWHPI 409 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V--~~l~~spd 409 (713)
+.+|++|-.|..|++|.+-.+...+.-+..|...+ ..|+|...
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K 870 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQK 870 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecc
Confidence 67888999999999999966655444443333322 23455543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=159.94 Aligned_cols=192 Identities=19% Similarity=0.349 Sum_probs=156.0
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEE--ccCC-CCe
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHK-NMV 315 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~~~~~~~--~~h~-~~I 315 (713)
+.++++..+|+|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||+|+......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4678999999999999999986655443 3343 456
Q ss_pred EEEEEcCCCCEEEEEE----CCCeEEEEECCCCee-EEE-eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 316 LCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 316 ~si~fspdg~~Latgs----~Dg~I~IwDl~t~~~-l~~-~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.|++.+-.++.+++|+ .|-.|.+||+|..+. +.. +..|...|++|.|+|.+.++|++||.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777766788888876 366899999998776 444 4579999999999999999999999999999999976543
Q ss_pred eEEE--ecccCCCeEEEEEcCCC--cEEE-EeCCcEEEEecCCCCCcc
Q 005123 390 QVEI--HNVHDNTVWDLAWHPIG--YLLC-SNDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 390 ~~~~--~~~h~~~V~~l~~spdg--~~la-S~Dg~v~iWd~~~~~~~~ 432 (713)
.-.+ ...|...|.++.|..++ ++.| +.+++..+|+++...+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 2222 22367789999999998 6555 599999999998877544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=154.08 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=182.4
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
...+..|.+.|+++.|-.+++ |++|...|.|++|++.+......+. .+...|+.+...++ ..|.+-+.|..+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 445668999999999987655 8899999999999999998777777 56778888888877 56888889999999998
Q ss_pred CCCeeEEE--------------E---------------------------------------ccCCCceEEEEEcCC-CC
Q 005123 258 ARCQEERS--------------L---------------------------------------TGHGWDVKSVDWHPT-KS 283 (713)
Q Consensus 258 ~~~~~~~~--------------l---------------------------------------~~h~~~V~sl~~spd-g~ 283 (713)
.-...+.. + ....+.+.|..|..+ +.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 54211100 0 011233556554432 22
Q ss_pred --EEEEEeCCCcEEEEECCCCceE----------EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--e--eE
Q 005123 284 --LLVSGGKDSLVKLWDAKSGREL----------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--K--EL 347 (713)
Q Consensus 284 --~L~sgs~Dg~I~IwDl~t~~~~----------~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--~--~l 347 (713)
+|++|.++|.|.+||+.++..+ .....|...|.++.|.+.-+.=++|+.+..+..|++... . .-
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 5678889999999999987443 333468889999999875555567777888999988632 2 12
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEec
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCR 425 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~ 425 (713)
.++....-.|..+.+-+ |++++||++.|++|+||+.++... +.++.-|...|++++|+++..++| |.|..|.+|++
T Consensus 245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22333345578888888 899999999999999999988775 455567999999999999976664 59999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=144.79 Aligned_cols=236 Identities=18% Similarity=0.288 Sum_probs=173.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCC------CcEEEEEcCCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDG------GAIKYWQNNMN 218 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~D------G~I~vwdl~~~ 218 (713)
...+++|+.|...+++|..+| ++||+++-.+.......+.+.+.-+...-..++|+ +|+.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 445599999999999999887 99999887555444433333332222222456666 44333 57999996666
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEEEEccC--CCceEEEEEcCCCCEEEE-EeCCCcE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGH--GWDVKSVDWHPTKSLLVS-GGKDSLV 294 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~~l~~h--~~~V~sl~~spdg~~L~s-gs~Dg~I 294 (713)
+.+.++ .....|.++.+.++ .|++.- +++|+||.+. +-+.++.+... ...+.+++-+.+..+||. |-.-|.|
T Consensus 86 ~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 666655 46788999999755 455544 5689999987 44445554422 233444444444445554 3456899
Q ss_pred EEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCE
Q 005123 295 KLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEY 369 (713)
Q Consensus 295 ~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~-I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~ 369 (713)
.|-|+...+. ...+.+|.+.|.|++++-+|..||+++..|+ |||||..+++.+.+++.- ...|.+++||+ +..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccE
Confidence 9999987655 4778899999999999999999999999996 899999999999998743 35799999999 8999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 005123 370 FVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~ 387 (713)
||++|+.|+|.||.++..
T Consensus 241 LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEcCCCeEEEEEeecC
Confidence 999999999999998653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-15 Score=172.06 Aligned_cols=250 Identities=13% Similarity=0.192 Sum_probs=181.9
Q ss_pred EEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCC-------ceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~-------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
+...|..|+..|..++.+++. .++++|+.||+|+|||+.+. +...++......+.++.....++.+|+++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 345678899999999998876 99999999999999996542 2233444457889999999999999999999
Q ss_pred CcEEEEEcCCCce-------eeeeccC--CCCeeEEEEec-CCC-EEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceE
Q 005123 208 GAIKYWQNNMNNV-------KANKSAH--KESVRDLSFCR-TDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVK 274 (713)
Q Consensus 208 G~I~vwdl~~~~~-------~~~~~~~--~~~V~~l~fs~-dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~ 274 (713)
|.|++.+++..+. ......+ ...|...+|.. +.. .|+.+...+.|..||++.......++ ...+.|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 9999999876321 1111111 22233334433 233 68888889999999998766554443 3457899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcC---CCCEEEEEE--CCCeEEEEECCCCeeEE
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ---NGNWVLTAS--KDQIIKLYDIRAMKELE 348 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fsp---dg~~Latgs--~Dg~I~IwDl~t~~~l~ 348 (713)
+++.++.++++++|+..|.+.+||+|-+..+..+. .+...|..+..++ ...++++++ ..+.|.+|++.++.+-.
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999999999999999888887764 3456777777766 234555444 57789999999987666
Q ss_pred EeecCCC-------------------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 349 SFRGHRK-------------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 349 ~~~~h~~-------------------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++...++ ....+.+.. .+.++++|+.|..|+.||...
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCC
Confidence 5543311 112223333 567899999999999999843
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=164.39 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=158.4
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec--
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-- 225 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-- 225 (713)
.+++|+.+|..|++++.||++|||+..+...+.....|.+.|.++.|++|+++|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888889999999999999999999999999 99999999996655543
Q ss_pred cCCCCeeEEEEecCC---CE--EEEEECCCeEEEEEcCCCee-----EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 226 AHKESVRDLSFCRTD---LK--FCSCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg---~~--Las~s~Dg~I~iwDl~~~~~-----~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
..+.....+.|+.|+ .+ ++.....+.|+.||+..... .+........|.+++++.+|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334456777788777 33 33334456677777643222 122222345799999999999999999999999
Q ss_pred EEECCCCceEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 296 LWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 296 IwDl~t~~~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
|++..+-+.+..+ +.|...|+.+.|+||.+++++.+.|..+.|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988877665 5688999999999999999999999888887765
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=169.53 Aligned_cols=243 Identities=18% Similarity=0.275 Sum_probs=183.5
Q ss_pred CCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCce--EE----EEeccCCCEEEEEEccCCC--EEEEEeCCCcEEEE
Q 005123 143 NRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF--EM----ILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYW 213 (713)
Q Consensus 143 H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~--~~----~l~~h~~~V~sl~~spdg~--~L~sgs~DG~I~vw 213 (713)
-...|+|++|++. ..+||.|+.+|.|.+||+..+.. .. ....|...|+.+.|..+.. -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4578999999995 57788889999999999887655 22 2346889999999977554 49999999999999
Q ss_pred EcCCCceee------eec------cCCCCeeEEEEecCC-CEEEEEECCCeEEEEEc---CCCe-----eEEEEccCCCc
Q 005123 214 QNNMNNVKA------NKS------AHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDF---ARCQ-----EERSLTGHGWD 272 (713)
Q Consensus 214 dl~~~~~~~------~~~------~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl---~~~~-----~~~~l~~h~~~ 272 (713)
+++.-.... ... .....+++++|.+.. ..+++|+++|.|..-+- .... ....+..|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876532210 001 223467889998744 67999999999887332 2221 12345568899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC--eeEE
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--KELE 348 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~--~~l~ 348 (713)
|.++.++|-+..++..+.|-+|+||... ....+..+..+...|++++||+.. ..|+++..||.|.|||+... +.+.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999966555555559999999988 666777777778889999999954 66778888999999999743 3455
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+.+.+....+.+.|++ .+.+|++|...|+|.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 5555556667778887 799999999999999999954
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-17 Score=169.17 Aligned_cols=236 Identities=17% Similarity=0.253 Sum_probs=206.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
+..-..+.++.+|++|+.|+..|.|..+|+.++++...+. ..+.|.++.|..+..+||++- ...++||| ..+..+..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEee
Confidence 4455678999999999999999999999999999888764 467899999998888888775 55799999 45677777
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
++.+ ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 7744 579999999999999999999999999999999999998888899999999988889999999999999999999
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.+..+-+|.+.|.+|++.+ +++++||++.|..|+|||++....+..... ......+++|..|.+.++....|.||.-
T Consensus 285 PLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred hHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCccccccccccceeeecCCeeeeehh
Confidence 9988999999999999999 899999999999999999988775555444 3567889999999999999999999965
Q ss_pred CCC
Q 005123 426 NRP 428 (713)
Q Consensus 426 ~~~ 428 (713)
...
T Consensus 362 ~~~ 364 (545)
T KOG1272|consen 362 ALK 364 (545)
T ss_pred hhc
Confidence 443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=164.75 Aligned_cols=210 Identities=21% Similarity=0.350 Sum_probs=173.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
.+.|+.++.||.+.|.+ +.++..+.+..|.++|.|-.|++||.-|+++++||.|++|.- ++-+..++......|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence 35788899999999987 456778889999999999999999999999999999999973 4544555556778999999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCe
Q 005123 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 315 (713)
Q Consensus 236 fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I 315 (713)
|.++.+.++.|. .+.+.|=.+.-...+...+.|.+-|.+++|++..+++++|++|-..+|||.. |..+..-..|...|
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 999988777664 3467787777777777888999999999999999999999999999999965 67777777899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
++++|+|+ +.+++++.+ +++ .-+...+.|..++||+ ++..+++|+..|.|.+-.
T Consensus 231 TSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcC-CCceeeccccCceEEEee
Confidence 99999999 666666532 333 1122457899999999 899999999999876543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=167.23 Aligned_cols=263 Identities=17% Similarity=0.275 Sum_probs=215.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...-..+.++.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++- ...+.|||-..-++ ..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl-HC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL-HC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE-ee
Confidence 34567889999999999999999999999999998888764 67899999998888887765 57899998654443 33
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
++. ...|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-+|..+|+|.+|...+.+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 333 4578899999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 304 ~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.+.++..|.+.|.+|++.++|+|++|.+.|+.|+|||+++...+.++.. ......+++|. ..+||. +....|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq--kglLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ--KGLLAL-SYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc--ccceee-ecCCeeeeeh
Confidence 9988889999999999999999999999999999999999888877765 45667888874 444444 4445899995
Q ss_pred cCCC--CceEEEeccc--CCCeEEEEEcCCCcEEE
Q 005123 384 VGHE--TPQVEIHNVH--DNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 384 ~~~~--~~~~~~~~~h--~~~V~~l~~spdg~~la 414 (713)
-... .........| .+.|.+|.|.|-..+|+
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLG 395 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLG 395 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeee
Confidence 3222 1111122222 35899999999776665
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=150.62 Aligned_cols=244 Identities=11% Similarity=0.194 Sum_probs=192.0
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc-CC
Q 005123 184 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF-AR 259 (713)
Q Consensus 184 ~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl-~~ 259 (713)
.....|+|.+|+.|...++++..+..|.||...... ...+++.|...|++|+|++..+.|++|+.|..-++|.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999877654 67778899999999999999999999999999999998 33
Q ss_pred C--eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE----EEEccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 260 C--QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 260 ~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~----~~~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
+ +....+..+...+++|.|+|.++.|++|+....|.||-++..+.- ..-+.+.+.|++++|++++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 3 345556668899999999999999999999999999987653321 1224467889999999999999999999
Q ss_pred CeEEEEECC-----C-------------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec
Q 005123 334 QIIKLYDIR-----A-------------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (713)
Q Consensus 334 g~I~IwDl~-----t-------------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~ 395 (713)
+.++||..- + +..+.++....+.|..+.|++ .+..|+-.+.|..|.+-|............
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchh
Confidence 999998642 1 223444545667899999999 899999999999999999866653333333
Q ss_pred ccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 396 VHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 396 ~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
...-+..++.|-.+..+++. .|..=.++..+..
T Consensus 247 ~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 247 TAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEE 280 (361)
T ss_pred hccCCceeeEeecCCceeecCCCCCceEEEeccc
Confidence 33367788888877766654 5544444544443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=166.94 Aligned_cols=212 Identities=21% Similarity=0.367 Sum_probs=164.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccC--CCEEEEEeCCCcEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spd--g~~L~sgs~DG~I~v 212 (713)
+...|.||.+.|+|++|+.||.+|++|+.|-.|.|||.-..+++..+ ++|...|.++.|-|. ++++++|..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34678999999999999999999999999999999998887777666 689999999999884 568889999999999
Q ss_pred EEcCCC----------ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee----------EEEEccCCC
Q 005123 213 WQNNMN----------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE----------ERSLTGHGW 271 (713)
Q Consensus 213 wdl~~~----------~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~----------~~~l~~h~~ 271 (713)
+|+... +....+..|...|..|+..+++ ..+.++++||+|+-+|++.... +..+....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999842 2334456788899999999998 8899999999999999975221 111122234
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------Cc----------eEEEEc-cC--------CC---CeEEEEE
Q 005123 272 DVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS--------GR----------ELCSFH-GH--------KN---MVLCVKW 320 (713)
Q Consensus 272 ~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t--------~~----------~~~~~~-~h--------~~---~I~si~f 320 (713)
...|+.++| +..+|++|+.|-..++||.+. +. ++..+. +| .. .++-++|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 577999998 456899999999999999531 11 222221 11 11 2566789
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 321 NQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
+|+|.-|++.-..-.|+++|+..++..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999988887776778999999876543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=160.24 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=158.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE----EEEeccCCCEEEEEE-----ccCCCEEEEEeCCCcEEEEEcC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVW-----SHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~----~~l~~h~~~V~sl~~-----spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.++...++-.|++|+..-.+ .+++|+...+..+ .........-+|-+| .+++--|++|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 45555566667777765433 6888887642211 111111122233344 3345567888888999998866
Q ss_pred CCceeeee----ccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCC--------------Cee--------------E
Q 005123 217 MNNVKANK----SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR--------------CQE--------------E 263 (713)
Q Consensus 217 ~~~~~~~~----~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~--------------~~~--------------~ 263 (713)
..+..+.+ ...+..|+++.|-+.+ ..++++-.+|.+++||.+. +.. +
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 54332222 1234789999998854 5677788899999997631 111 1
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
..+....+.|+.++|++||++||+.+.||.++|||..+.+.+..++..-+...|++|||||+||++|++|..|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11112345789999999999999999999999999999888887777778899999999999999999999999999999
Q ss_pred CeeEEEeecCCCCeEEEEEeC
Q 005123 344 MKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp 364 (713)
.+.+..-.+|+++|+.|+|.|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999984
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-17 Score=180.42 Aligned_cols=241 Identities=18% Similarity=0.303 Sum_probs=195.0
Q ss_pred eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 178 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
.++.+.+|..+|.|+.|...|.++++|++|..|+||..++..+.....+|...|++++.+.++..+++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE----c-cCCCCeEEEEEcCCCCEEEEEEC
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----H-GHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~----~-~h~~~I~si~fspdg~~Latgs~ 332 (713)
.++..+..+.+|++.|++|+|+|-. +.+.||++++||.+ ...+... + ..+..+.++.|..++..+++++.
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 9999999999999999999999854 77889999999998 1111111 0 12356777888888889999999
Q ss_pred CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 333 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
|+.-..|.+.... .+...+.-+.++.+...+.+++-.+-.+++|++.++. +.....+|...+..|.+++-.-.
T Consensus 337 d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 337 DGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred CcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch-hhhhhcccccceeeeeecCCCcH
Confidence 9998888765321 1222223333333344677788888899999997665 45566789999999999998855
Q ss_pred E---EEeCCcEEEEecCCCCC
Q 005123 413 L---CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 413 l---aS~Dg~v~iWd~~~~~~ 430 (713)
+ ++.||.+.|||+-....
T Consensus 410 i~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred hhhhccCCCceEeeecccCCc
Confidence 5 45999999999854433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=162.20 Aligned_cols=293 Identities=15% Similarity=0.164 Sum_probs=208.8
Q ss_pred eEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
++..+.+..|.+.|++++|+.||.+|++|+..|.+.+|.+++++ ...+..-.+.|..+.+++|+++.++...|+.|.+.
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 44567788999999999999999999999999999999999988 55666678899999999999999999999999999
Q ss_pred EcCCCceeeeecc-----------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-----------CCC
Q 005123 214 QNNMNNVKANKSA-----------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----------HGW 271 (713)
Q Consensus 214 dl~~~~~~~~~~~-----------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----------h~~ 271 (713)
...+.+....+.+ ..+-.+.+++++.-+.++-.+..++|.+||+-+.+.+..+.. +..
T Consensus 320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v 399 (792)
T KOG1963|consen 320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQV 399 (792)
T ss_pred eccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEE
Confidence 8766554443322 233467788888778888899999999999977666554421 123
Q ss_pred ceEEEEEcCCCCEEEEEeC--------CC--cEEEEECCCCce----EEE-EccCCCCeEEEEEcC--CCCEEEEEECCC
Q 005123 272 DVKSVDWHPTKSLLVSGGK--------DS--LVKLWDAKSGRE----LCS-FHGHKNMVLCVKWNQ--NGNWVLTASKDQ 334 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~--------Dg--~I~IwDl~t~~~----~~~-~~~h~~~I~si~fsp--dg~~Latgs~Dg 334 (713)
.++.++.+..|.++++.-. || .+++|-...... ..+ ...|...+...++.. ....+++++.||
T Consensus 400 ~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 400 GITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred eeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 4677777778888887632 33 478886543322 222 235666666666654 233789999999
Q ss_pred eEEEEECCC----------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEE
Q 005123 335 IIKLYDIRA----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 404 (713)
Q Consensus 335 ~I~IwDl~t----------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l 404 (713)
.++||-+.. +.+...-.-|...+++++|+. +|. +++++.|++|.|||..+...+..........+..+
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dGs-lla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~ 557 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DGS-LLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAEL 557 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CCc-EEEEecCCEEEEecCCChhhhhccccccccchHhH
Confidence 999998832 222222224788999999998 565 55566788999999987543333333223334334
Q ss_pred EEc----CCCcEEEEeCCcEEEEecCCCC
Q 005123 405 AWH----PIGYLLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 405 ~~s----pdg~~laS~Dg~v~iWd~~~~~ 429 (713)
.+. .++.++......+.+|++-+..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~l~~WNll~~~ 586 (792)
T KOG1963|consen 558 LFTAQTQNDGALVHATQQRLSVWNLLSMS 586 (792)
T ss_pred hhhcccccccceeeccCceEehHhhhhhh
Confidence 333 3445555578888888875443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-15 Score=167.33 Aligned_cols=240 Identities=18% Similarity=0.254 Sum_probs=178.4
Q ss_pred CceEEEEEccC--CCEEEEEECCCcEEEEeCC-----CCceEEEEec-------cCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 145 CSINRVLWTPT--GRRLITGSQSGEFTLWNGQ-----SFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 145 ~~V~~v~~spd--g~~Latgs~dg~V~Iwd~~-----t~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..|+.+.+-.+ ..+|++|+.||.|+||+-. +.+++....+ ..+.-.-++|.....+|+++++-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 46888888764 4689999999999999722 2233332221 11122346787777778877778999
Q ss_pred EEEEcCCCceeeeec-cCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC---eeEEEEccCCCc--eEEEEEcCCCC
Q 005123 211 KYWQNNMNNVKANKS-AHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWD--VKSVDWHPTKS 283 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~-~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~~~--V~sl~~spdg~ 283 (713)
+|||.+...+...+. +....|++++-+- .|+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 999999887766653 3445677776544 4689999999999999998653 245667778877 99999998665
Q ss_pred -EEEEEeCCCcEEEEECCCCceEE--EEccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----
Q 005123 284 -LLVSGGKDSLVKLWDAKSGRELC--SFHGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---- 353 (713)
Q Consensus 284 -~L~sgs~Dg~I~IwDl~t~~~~~--~~~~h---~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h---- 353 (713)
.|++|+.||.|++||++...... ++..| .+..+++..+.+...||+|+. +.|+|||+. |+.+..++.+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 49999999999999999742222 22222 235999999999999999998 999999987 5555554433
Q ss_pred ---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 354 ---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 354 ---~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
...+.+++|+| ..-++|+|+.|.+|.||...+.
T Consensus 1348 ~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 24689999999 7889999999999999987543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=150.09 Aligned_cols=286 Identities=11% Similarity=0.130 Sum_probs=186.1
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeec
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~ 225 (713)
-..++|++||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.|.|+|.++.+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 3457899999999999999999999999999999988644 567899999999998775 67999999999998887764
Q ss_pred cC-------CCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEE-EEccCCCceEEEEEcCCCCEEEEE-eCCCcEE
Q 005123 226 AH-------KESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 295 (713)
Q Consensus 226 ~~-------~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~-~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~ 295 (713)
.. ...+..|..++....++.+-. .+.|.+.|..+.+.+. .............|++++++++++ ..++.|.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 32 346788888888886666655 4889888987654332 222345567889999999987665 4567899
Q ss_pred EEECCCCceEEEEcc----CCCCeEEE-------EEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 296 LWDAKSGRELCSFHG----HKNMVLCV-------KWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 296 IwDl~t~~~~~~~~~----h~~~I~si-------~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++|.++++.+..+.. |...+..+ .|.. .+...++.-....+.+||..+++.+.++...... ..++.
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 999999887766532 22222221 2322 2333333333346778999999999999977666 88889
Q ss_pred eCCCCCEEEEE----ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EE---eCCcEEEEecCCCCCcccc
Q 005123 363 HPFHEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CS---NDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 363 sp~~~~~lasg----s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS---~Dg~v~iWd~~~~~~~~~~ 434 (713)
+| ++.++.+. ..++.|.++|.++.+....+.......+..+.|++||..+ .| .++.|.|||....+...+.
T Consensus 277 hP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 277 HP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99 67777766 5568999999987754444433333459999999999644 33 3447999998666555443
Q ss_pred c
Q 005123 435 K 435 (713)
Q Consensus 435 ~ 435 (713)
.
T Consensus 356 ~ 356 (369)
T PF02239_consen 356 P 356 (369)
T ss_dssp E
T ss_pred E
Confidence 3
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=153.37 Aligned_cols=287 Identities=15% Similarity=0.244 Sum_probs=206.7
Q ss_pred CCCCceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
+|...-+.|..++||+||+ +|.+.-.|++||+....+...-......|.-.-++.|-..++.-..|.+|.+-..-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4566778899999999865 777888999999987665544333344565555665656666666677776643221111
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
... ....-.+++++.-..-|++++....|+-++++.+..+..+......+++|..++...+|++|+.||.|.+||.+
T Consensus 129 ~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 12233456665544445566666689999999999999888888999999999999999999999999999999
Q ss_pred CCceEEEEccC-----------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCC-
Q 005123 301 SGRELCSFHGH-----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE- 367 (713)
Q Consensus 301 t~~~~~~~~~h-----------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~- 367 (713)
+...+.++... ...|+++.|+.+|-.+++|+.+|.|.|||+++.+.+..-. +..-.|..+.|.+.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 87766665421 1249999999999999999999999999999988775443 2235789999976433
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE-EeCCcEEEEecCCCCCcccc
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC-SNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la-S~Dg~v~iWd~~~~~~~~~~ 434 (713)
..|++ .+...++|||-.+++....+.. ...++++++-+++ .++. -.+..+..|-+..-+...+.
T Consensus 286 ~~v~S-~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 286 NKVVS-MDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred ceEEe-cchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 34444 4456899999988876655543 4559999998876 3333 37778888877776665543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=165.62 Aligned_cols=257 Identities=18% Similarity=0.266 Sum_probs=186.5
Q ss_pred CCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEE
Q 005123 175 SFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSC 246 (713)
Q Consensus 175 t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~ 246 (713)
+|..+..+..|+..|..++.+.+. .++++|+.||+|++||+..- +...++......+.++..+..++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 366788888899999999988766 89999999999999997632 2333444467789999999999999999
Q ss_pred ECCCeEEEEEcCCCe-------eEEEEcc--CCCceEEEEEcC-CCC-EEEEEeCCCcEEEEECCCCceEEEEc--cCCC
Q 005123 247 SDDTTVKVWDFARCQ-------EERSLTG--HGWDVKSVDWHP-TKS-LLVSGGKDSLVKLWDAKSGRELCSFH--GHKN 313 (713)
Q Consensus 247 s~Dg~I~iwDl~~~~-------~~~~l~~--h~~~V~sl~~sp-dg~-~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~ 313 (713)
+.||.|++.+++..+ ..+.... ....|..-++.. +.. .|+.+...+.|..||+++.....+++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 999999999987521 1111111 222233334433 233 78888899999999999876655443 3467
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCCCC--CEEEEEE--CCCcEEEEEcCCCC
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE--EYFVSGS--LDGSIFHWLVGHET 388 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~~~--~~lasgs--~DG~I~Iwd~~~~~ 388 (713)
.|++++.++.++|+++|+..|.+.+||+|-...+..+. .+...|..+..++... ...++++ ..+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 89999999999999999999999999999888887765 2446788888777544 5555544 46789999998886
Q ss_pred ceEEEecccC-------------------CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCc
Q 005123 389 PQVEIHNVHD-------------------NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 389 ~~~~~~~~h~-------------------~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~ 431 (713)
....+..... ..+.+..-..++.++.+ .|..||.||...+...
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 6555543311 12333333455555554 9999999998776654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=154.49 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=163.9
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|.+||....+. +.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ......+..++|++|++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3689999876554 344556778999999999999886542 35799999988764432 233444567899999998
Q ss_pred EEEE-ECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCeE
Q 005123 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 Las~-s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+.. +.++ .|++||+++++... +..+...+....|+||++.|+.++.+ + .|+++|+.+++.. .+......+.
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8865 4444 59999998876544 44445577899999999988877764 3 4555577766543 3333444567
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc---EEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS---IFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~---I~Iwd~~~~~~~ 390 (713)
+.+|++||++|+..+.+ ..|++||+.+++... +.. ........|+| ++++|+.++.++. +.+++++ +..
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~-G~~- 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTD-GRF- 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECC-CCC-
Confidence 78999999999876644 358899998876443 322 12345678999 7888888877764 6666763 332
Q ss_pred EEEecccCCCeEEEEEcCC
Q 005123 391 VEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spd 409 (713)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 3334457788999999873
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=146.07 Aligned_cols=272 Identities=11% Similarity=0.278 Sum_probs=192.7
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccC
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 227 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~ 227 (713)
-++||++|++||+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++ ....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999866 788889888766544443 45677889998887766 5577889999999999888888888
Q ss_pred CCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC---------------
Q 005123 228 KESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------- 291 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------------- 291 (713)
...+..++|+|||+.|+ +..-|-+|.||.+.+.+.... .-....+..++|++||++.+.++.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999996655 555688999999988655433 2234456888999998887776541
Q ss_pred ---------------------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-
Q 005123 292 ---------------------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES- 349 (713)
Q Consensus 292 ---------------------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~- 349 (713)
..+.+||.--.-.+..++ ..-.+..++|+|.+++|++|+.|+.+||.+--+.+...+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 224444432111122222 234588899999999999999999998866433221110
Q ss_pred -----------------------------------------------------------ee------cCCCCeEEEEEeC
Q 005123 350 -----------------------------------------------------------FR------GHRKDVTALAWHP 364 (713)
Q Consensus 350 -----------------------------------------------------------~~------~h~~~V~sl~fsp 364 (713)
++ ...-.+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 0112367789999
Q ss_pred CCCCEEEEEECC--CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEEEEeCCcEEEEecCC
Q 005123 365 FHEEYFVSGSLD--GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 365 ~~~~~lasgs~D--G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~laS~Dg~v~iWd~~~ 427 (713)
|..+++|-.+. ..+.+||+...+....+. ....|....|+|.. .++|+....+.+|...-
T Consensus 329 -Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 329 -DSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -CceEEeeecCCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 77888776543 469999997655333333 35689999999987 44566777889997654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-14 Score=157.09 Aligned_cols=220 Identities=11% Similarity=0.136 Sum_probs=159.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEEC---CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~---dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG--~I~v 212 (713)
.+..+...+.+.+|||||+.|+..+. +..|++||+.+++... +....+.+.+++|+|||+.|+.. +.+| .|.+
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 34456678999999999999987653 3579999998876433 33334455678999999988855 4455 4888
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-C--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+++++.... ..+...+....|++|++.|+.++.+ + .|+++|+.+++. ..+......+.+..|++||++|+..+
T Consensus 272 ~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 272 MDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEE
Confidence 99988876544 3444567899999999998877764 3 455557766544 33343444567899999999998876
Q ss_pred CC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 290 KD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI---IKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 290 ~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~---I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.+ ..|.+||+.+++.. .+.. ........|++||++|++++.++. +.++++. ++....+..|.+.+...+|+
T Consensus 350 ~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred ccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccC
Confidence 54 35889999887644 3332 223456889999999999887764 6777874 66667777788889999998
Q ss_pred C
Q 005123 364 P 364 (713)
Q Consensus 364 p 364 (713)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 7
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-14 Score=156.50 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=161.4
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|+|||.... ..+.+..+...+.+.+|++|++.|+..+.+ ..|.+||+.+++.... ........+++|++|++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 36899998644 445566677889999999999999877643 4699999988765433 333445568899999998
Q ss_pred EE-EEECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCceEEEEccCCCCeE
Q 005123 243 FC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSL--VKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 La-s~s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg~--I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+ +.+.++ .|++||+.+++. ..+..+......++|++|++.|++++. ++. |+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 76 445555 599999988764 344445555678999999998887764 444 7777877765433 222334455
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC-C--cEEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-G--SIFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G--~I~Iwd~~~~~~~ 390 (713)
.++||+||++|+..+.++ .|++||+.+++.. .+. +........|++ ++++|+..+.+ + .|++++++. ..
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g--~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDG--RV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCC--Cc
Confidence 789999999998776443 6999999887654 333 223455779999 66666555543 3 477777643 23
Q ss_pred EEEecccCCCeEEEEEcC
Q 005123 391 VEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (713)
...+..+.+.+...+|++
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 344444566778888876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-14 Score=157.50 Aligned_cols=235 Identities=10% Similarity=0.083 Sum_probs=156.3
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|.+||... .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ......+.+.+|++|++.
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 4677888743 4445566678889999999999999876643 3599999998875443 334456678999999998
Q ss_pred EE-EEECCCeEEEEE--cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCCceEEEEccCCCCeE
Q 005123 243 FC-SCSDDTTVKVWD--FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLW--DAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 La-s~s~Dg~I~iwD--l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg~I~Iw--Dl~t~~~~~~~~~h~~~I~ 316 (713)
|+ +.+.++...||. +..+. ...+..+...+.+..|++||+.|+..+. ++...|| |+.+++... +........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 87 456777766665 44443 4455555555678899999998887664 4555555 545544322 222233445
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-CCc--EEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGS--IFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-DG~--I~Iwd~~~~~~~ 390 (713)
..+||+||++|+..+.++ .|++||+.+++...... ........|++ +++.|+.++. .|. +++.++ ....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~--~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSS--DGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECC-CCCEEEEEEecCCCEEEEEEEC--CCCc
Confidence 689999999999877654 69999998876543322 23346789999 5665555554 444 444444 2333
Q ss_pred EEEecccCCCeEEEEEcCC
Q 005123 391 VEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spd 409 (713)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 3444456677888888864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=146.85 Aligned_cols=249 Identities=17% Similarity=0.190 Sum_probs=187.2
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC------ceeeee-ccCCCCeeEEEEecCCCEEEEEECCCeE
Q 005123 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN------NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTV 252 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~------~~~~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I 252 (713)
+.+.+|.+.|.+|.|+.++++|++|+.|..++||+++.. +.+... ..|...|.||+|...+++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 446689999999999999999999999999999997632 333333 3456899999999999999999999999
Q ss_pred EEEEcCCCeeEEEEcc--CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEccCCCCeEEEEEcCC-CCE
Q 005123 253 KVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNW 326 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~~~I~si~fspd-g~~ 326 (713)
...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... .+............+.|+|. -.+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999888877652 23589999999999999999999999999998754 12223345566888999994 577
Q ss_pred EEEEECCCeEEEEECCCCee-EEE------eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC-
Q 005123 327 VLTASKDQIIKLYDIRAMKE-LES------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD- 398 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~-l~~------~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~- 398 (713)
|++.+..+-+-|||++.... +.. +......-.++.|++ +++.|++.-....-.+||+-+....+... .|.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~ 287 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNP 287 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEec-cCCC
Confidence 88899999999999985432 111 111122335778999 77777777666666778886544333222 222
Q ss_pred ------CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 399 ------NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 399 ------~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
..+.+++|..|..++.+ ++-.|.+|.+-+..+
T Consensus 288 ~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred CcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence 35778889888876644 888999999865433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-14 Score=155.54 Aligned_cols=219 Identities=13% Similarity=0.127 Sum_probs=154.4
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl 215 (713)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|++||+.|+ +.+.+|...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 45677889999999999999987643 359999999886543 444456677899999999887 5677887777654
Q ss_pred --CCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEc--CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 216 --NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 216 --~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl--~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
.++. ...+..+...+....|++|++.|+..++ ++...||.+ .+++.. .+..........+|++||++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEc
Confidence 4444 3334445555677899999998886664 455566654 444332 22223334557899999999998776
Q ss_pred CC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 291 Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
++ .|.+||+.+++...... ......++|++||+.|+.++.++ .+.+.|+. ++....+..+.+.+...+|+|
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 54 59999998876543322 23456789999999998877544 46666774 555666666777788888887
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=140.21 Aligned_cols=240 Identities=15% Similarity=0.284 Sum_probs=171.0
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC--
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-- 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~-- 218 (713)
.+..+..++|++.-..+|++..|..|+|||-+. ++...++ .....|+|++|-|.+ +.|++|+. +-|.||..+..
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 456789999999888899999999999999777 4444444 346789999999976 56777776 55899975422
Q ss_pred --ce----------eeeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 219 --NV----------KANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 219 --~~----------~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
.. +....+| ..|+++.|.+|+..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1111223 68999999999999998875 6789999999988776665566789999999999999
Q ss_pred EEEeCCCcEEEEECC-CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------ee---EEE
Q 005123 286 VSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------KE---LES 349 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------------~~---l~~ 349 (713)
++++-|+..++|+.. +....+-.. ..+.|...+|+|+|++|+.++. +.-+||.+... +. +..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 999999999999554 333333333 3458999999999998876543 23344443210 00 011
Q ss_pred e---------ecCCCCeEEEEEeCCCCCEEEEEECCC--------cEEEEEcCCCC
Q 005123 350 F---------RGHRKDVTALAWHPFHEEYFVSGSLDG--------SIFHWLVGHET 388 (713)
Q Consensus 350 ~---------~~h~~~V~sl~fsp~~~~~lasgs~DG--------~I~Iwd~~~~~ 388 (713)
+ +.-.+.+.+++|.| .+.+||+.-..+ .|.+||.+..-
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred chhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 1 01245688999999 788888776544 36677775443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=160.01 Aligned_cols=217 Identities=17% Similarity=0.314 Sum_probs=164.4
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-ccCCCCeeEEEEec--CCCEEEEEECCCeEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVK 253 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~ 253 (713)
....++.+|.+.|+|++|+.||.+|++|++|-.+.|||.-..+.+..+ .+|...|.+++|-| +++.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 356688999999999999999999999999999999998876665544 67999999999988 457789999999999
Q ss_pred EEEcCCC----------eeEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceE----------EEEccCC
Q 005123 254 VWDFARC----------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGREL----------CSFHGHK 312 (713)
Q Consensus 254 iwDl~~~----------~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~----------~~~~~h~ 312 (713)
++|+.+. +....+..|...|..|+..+++ +.+.++++||+|+-||++..... ..+....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999742 2344556788999999999988 89999999999999999863211 1111222
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--------Ce----------eEEEee-cCC-----------CCeEEEE
Q 005123 313 NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA--------MK----------ELESFR-GHR-----------KDVTALA 361 (713)
Q Consensus 313 ~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t--------~~----------~l~~~~-~h~-----------~~V~sl~ 361 (713)
-...|+.++| +..+|++|+.|-..++||.+. ++ ++..|. +|- ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 3567899999 467889999999999999542 11 122221 121 1256788
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
|+|.+..+|++-+.+ .|+++|+..++......
T Consensus 281 fnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ECCCCcEEEEeeCCe-EEEEEeecCCCCceeec
Confidence 999555666666555 89999998776554443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=152.46 Aligned_cols=234 Identities=11% Similarity=0.062 Sum_probs=162.7
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|++||.... ..+.+..+...+.+.+|++||+.|+..+. +..|.+||+.+++... +..+...+.+.+|++|++.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCE
Confidence 37889998554 44567778889999999999999887653 4689999998886543 3455667788999999988
Q ss_pred EE-EEECCCe--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEccCCCCeE
Q 005123 243 FC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 La-s~s~Dg~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+ +.+.++. |++||+++++. ..+..+.....+..|++|++.|+..+. ++ .|++||+.+++.. .+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 76 4455554 78889887654 445556666778999999998888774 33 5888898766543 3333455677
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-C-----CcEEEEEcCCC
Q 005123 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-D-----GSIFHWLVGHE 387 (713)
Q Consensus 317 si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-D-----G~I~Iwd~~~~ 387 (713)
...|++||++|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+| +++.|+..+. . ..|+++|++..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999999887654 3688899865543 3332 233567889999 5666655443 3 25777777544
Q ss_pred CceEEEecccCCCeEEEEEcCC
Q 005123 388 TPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spd 409 (713)
.. ..+. ..+.+...+|++-
T Consensus 415 ~~--~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 415 NE--REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ce--EEcc-CCCCccCcccCCC
Confidence 32 2222 2445677778763
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-14 Score=142.88 Aligned_cols=242 Identities=19% Similarity=0.368 Sum_probs=174.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEccCC--CEEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVSG 204 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~------------~~V~sl~~spdg--~~L~sg 204 (713)
.+-|.+|.|..+|.+||||+.+|.|.+|.-+... ....++.|+ ..|..|.|..++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999644322 233444443 468889998876 467778
Q ss_pred eCCCcEEEEEcCCCceee------------------------------------eeccCCCCeeEEEEecCCCEEEEEEC
Q 005123 205 DDGGAIKYWQNNMNNVKA------------------------------------NKSAHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~------------------------------------~~~~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
..|.+|++|.+....... .-..|..-|++|+++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999865432111 0135777899999999998888775
Q ss_pred CCeEEEEEcCCCee---EEEEcc-----CCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceE----EEE-------
Q 005123 249 DTTVKVWDFARCQE---ERSLTG-----HGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGREL----CSF------- 308 (713)
Q Consensus 249 Dg~I~iwDl~~~~~---~~~l~~-----h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~----~~~------- 308 (713)
|=.|.+|+++-... +..++. ...-|++..|+| ..++|+..+..|+|+|.|++..... +.+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 66899999864322 222332 234588999999 4578888899999999999853221 111
Q ss_pred -----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeeEEEeecCCC------------C---eEEEEEeCCCC
Q 005123 309 -----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRK------------D---VTALAWHPFHE 367 (713)
Q Consensus 309 -----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~------------~---V~sl~fsp~~~ 367 (713)
..--..|..+.|+.+|+|+++-+. -+|+|||+. ..+.+.++..|.. . -..++|+- ++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-ND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-Cc
Confidence 112346889999999999987543 589999994 5566666665532 1 34678887 77
Q ss_pred CEEEEEECCCcEEEEEcCCCC
Q 005123 368 EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+++||+....+++|++..+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 899999999999999965443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=143.92 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=195.5
Q ss_pred CCCceEEEEEccCCC--EEEEEECCCcEEEEeCCCCceEEEE------eccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 143 NRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 143 H~~~V~~v~~spdg~--~Latgs~dg~V~Iwd~~t~~~~~~l------~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
....|+.++|..|++ .|+.++.|..+..++.....+...+ ......|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 456788888887764 3444446777777776665554433 3345666666654 45778888899999999
Q ss_pred cCCCce----eeeeccCCCCeeEEEEecCCCE-EEEEECC--CeEEEEEcCCCeeEEEEccC---------CCceEEEEE
Q 005123 215 NNMNNV----KANKSAHKESVRDLSFCRTDLK-FCSCSDD--TTVKVWDFARCQEERSLTGH---------GWDVKSVDW 278 (713)
Q Consensus 215 l~~~~~----~~~~~~~~~~V~~l~fs~dg~~-Las~s~D--g~I~iwDl~~~~~~~~l~~h---------~~~V~sl~~ 278 (713)
.+.+.. ...+ .....+..+.-++...+ +++|+.. ..+.|||++..+.+..-+.- .-.++++.|
T Consensus 132 ~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 884431 1112 22345555555554444 5558888 88999999988655443321 125778899
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCC
Q 005123 279 HPT--KSLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHR 354 (713)
Q Consensus 279 spd--g~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~ 354 (713)
.+. ...|++++.-+.|++||.+.++ .+..|.-....|+++...+++++|++|...+.+..||++.++.+.. +.+..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 7899999999999999999754 6777877788999999999999999999999999999999998876 88899
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
+.|++|..++ ...+|++++-|..|+|+|+.+...+..++. ...+++|.+.++-
T Consensus 291 Gsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 291 GSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDDV 343 (412)
T ss_pred CCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh--hccccEEEecCCc
Confidence 9999999999 789999999999999999988555444443 4567777776543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=154.28 Aligned_cols=220 Identities=14% Similarity=0.145 Sum_probs=158.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG--~I~v 212 (713)
.+..+...|.+.+|++||+.|++++.+ ..|++||+.+++.. .+....+...+++|++||+.|+ +.+.+| .|.+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 455677789999999999999988743 46999999887654 3344455566889999999776 445555 5999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CCe--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+.+++... +..+.......+|++|+++|+.++. ++. |+++|+.+++... +.........++|++|+++|+..+
T Consensus 277 ~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEE
Confidence 9998887544 3444555678899999999887764 444 7777877665433 322334456789999999998876
Q ss_pred CCC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 290 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 290 ~Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.++ .|.+||+.+++.. .+. +........|++||++|+..+.+ ..|.++|+. +.....+..+.+.+...+|+
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccC
Confidence 543 5999999887654 333 22345678999999998877653 468888886 44555566566777888887
Q ss_pred C
Q 005123 364 P 364 (713)
Q Consensus 364 p 364 (713)
|
T Consensus 432 p 432 (433)
T PRK04922 432 P 432 (433)
T ss_pred C
Confidence 6
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-13 Score=136.82 Aligned_cols=269 Identities=15% Similarity=0.296 Sum_probs=189.2
Q ss_pred CceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~ 222 (713)
+.|.-+.|..|..+++++ ..|+.|.+|++..-+....+......+.+++|||||+.|+ +...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 457778888888777755 6688999999999888888988899999999999996655 66778999999998877654
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECC------------------------------------CeEEEEEcCCCeeEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDD------------------------------------TTVKVWDFARCQEERSL 266 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~D------------------------------------g~I~iwDl~~~~~~~~l 266 (713)
. ...+..+..++|++|+++.+.++.. ..+.|||.--.-.+..+
T Consensus 129 ~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred e-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 3 3345566889999999887766431 23455553211111111
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--------------------------------------
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-------------------------------------- 308 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-------------------------------------- 308 (713)
...-.+..++|+|.+++|++|+.|+.++|.+--+.+...++
T Consensus 208 -e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 -ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred -eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 12356899999999999999999999888654332211100
Q ss_pred ----------------------c------cCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeeEEEeecCCCCeE
Q 005123 309 ----------------------H------GHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 309 ----------------------~------~h~~~I~si~fspdg~~Latgs~D--g~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+ .....+.-++||+|..++++-.++ +.+.|||+++.+....+ .....|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 0 001235678999999988876543 57999999976644333 3567899
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE--EEeCCc
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHT 419 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l--aS~Dg~ 419 (713)
...|+| ....|+.+.....+++|...- ...+... ...-.|.++.|+-+|..+ ++.|..
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg-~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSG-PRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCC-ceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999 666777777777899998744 3233332 234679999999888554 455543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-13 Score=150.60 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=158.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEEC---CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCc--EE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGA--IK 211 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~---dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~--I~ 211 (713)
+.+..|...|.+.+|++||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|++||+.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 346678889999999999999998764 468999999887653 4555667788999999999876 5555555 77
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
+||++++.... +..+.......+|++|++.|+..+. ++ .|++||+..++.. .+......+....|+||++.|+..
T Consensus 274 ~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence 77888776544 4445556778999999999887764 33 6888898765543 343345567788999999999887
Q ss_pred eCC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 289 GKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 289 s~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D------g~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
+.+ ..|.+||+.++.. ..+. ....+..+.|++||++|+..+.+ ..|+++|+..++. ..+. ....+..
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~ 427 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASD 427 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccC
Confidence 654 3588889865543 3333 23357788999999998876543 3688888876544 3444 3445677
Q ss_pred EEEeC
Q 005123 360 LAWHP 364 (713)
Q Consensus 360 l~fsp 364 (713)
.+|+|
T Consensus 428 p~Wsp 432 (435)
T PRK05137 428 PAWSP 432 (435)
T ss_pred cccCC
Confidence 78876
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=149.51 Aligned_cols=216 Identities=15% Similarity=0.253 Sum_probs=152.5
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCc----eeeeeccCCCCeeEEEE-----ecCCCEEEEEECCCeEEEEEcCC
Q 005123 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKSAHKESVRDLSF-----CRTDLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 189 V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~----~~~~~~~~~~~V~~l~f-----s~dg~~Las~s~Dg~I~iwDl~~ 259 (713)
++...++-.|++|+..- ...+.||+.+.+. .+....-.....+|-+| .+++--|+++-..|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44444455566665433 2457777766432 11111111222333333 34555688888899999998765
Q ss_pred CeeEEEEc----cCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------Cce--------------EE
Q 005123 260 CQEERSLT----GHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS--------------GRE--------------LC 306 (713)
Q Consensus 260 ~~~~~~l~----~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t--------------~~~--------------~~ 306 (713)
.+..+.+. -....|+||.|-+ +...++++-.+|.+++||..- +.. +.
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 33222221 1346899999998 455777788899999997631 111 11
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.+....+.|+.++|++||++||+.+.||.+||||..+.+.+..++..-+...|++||| |+++|++|++|.-|.||.+..
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEecc
Confidence 1112245688999999999999999999999999999998888887888999999999 899999999999999999954
Q ss_pred CCceEEEecccCCCeEEEEEc
Q 005123 387 ETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~s 407 (713)
.+++..-.+|...|+.++|+
T Consensus 364 -rRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 364 -RRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -ceEEEeccccccceeeEeec
Confidence 44666667899999999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=131.69 Aligned_cols=235 Identities=12% Similarity=0.164 Sum_probs=169.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC--CeeEEEEecCCCEEEE-EECC------CeEEEEEcC
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--SVRDLSFCRTDLKFCS-CSDD------TTVKVWDFA 258 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~--~V~~l~fs~dg~~Las-~s~D------g~I~iwDl~ 258 (713)
...+++|+.|...++++.++| .+||+.+--+.......+.+ .+..+-| ..++|+. |+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999888766 89998875433222222222 2222222 2344443 3332 479999977
Q ss_pred CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEccC--CCCeEEEEEcCCCCEEEE-EECCC
Q 005123 259 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGH--KNMVLCVKWNQNGNWVLT-ASKDQ 334 (713)
Q Consensus 259 ~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~-t~~~~~~~~~h--~~~I~si~fspdg~~Lat-gs~Dg 334 (713)
..+++.++. ....|.+|.+.++ .|++.- +++|+||... +-+.++.+... ...+.+++-+.+..+||. |..-|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 777777776 6678999999854 566655 4789999887 45555555432 233555544445555664 45678
Q ss_pred eEEEEECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-EEEEEcCCCCceEEEeccc-CCCeEEEEEcCCC
Q 005123 335 IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIG 410 (713)
Q Consensus 335 ~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg 410 (713)
.|.|-|+...+. ...+..|++.|.+++.+- .+.++||+|..|+ |+|||..+++.+.++..+- ...|.+|+|+++.
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 999999986655 477889999999999998 8999999999998 8999999999888877663 3579999999999
Q ss_pred cEEEE--eCCcEEEEecCCCCC
Q 005123 411 YLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 411 ~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.+||. +-|+|.||.+.....
T Consensus 239 s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCCC
Confidence 88863 789999999866543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-13 Score=135.61 Aligned_cols=228 Identities=16% Similarity=0.283 Sum_probs=162.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-- 262 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~-- 262 (713)
+..+..++|++.-..++++..|-.|++||-.+.............|++++|-|.+ +.|++++.. -|.||.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4457788999877788899999999999988754444444566789999999865 557777755 599998642111
Q ss_pred ------------EEEEccCCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 263 ------------ERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 263 ------------~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+....+| ..|+++.|.+||..+++++. |..|.|||.+++..+.......+.++-+.||||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1112233 67999999999999999875 567999999998877665445677999999999999999
Q ss_pred EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE---------EEe------
Q 005123 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV---------EIH------ 394 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~---------~~~------ 394 (713)
++-|+..++|.............-.+.|...+|+|.+..+|++++..-.|+-..+....... .+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999995543332223333445899999999666666666655555443332211110 000
Q ss_pred --cc----cCCCeEEEEEcCCCcEEEE
Q 005123 395 --NV----HDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 395 --~~----h~~~V~~l~~spdg~~laS 415 (713)
.. -.+.+.+++|++.|.++|.
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEE
Confidence 00 1357889999999998876
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-12 Score=142.96 Aligned_cols=233 Identities=13% Similarity=0.116 Sum_probs=155.8
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
..|.++|....+ .+.+..+...+.+.+|++|+++|+.+..+ ..|++||+.+++.... ..+...+.+++|++|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 468888876444 44555667789999999999999877644 4799999998865443 334556777999999988
Q ss_pred EEEE-ECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCeE
Q 005123 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 243 Las~-s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
|+.. +.++ .|++||+.++... .+..+........|++|++.|+.++.. + .|+++|+++++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4343 5899998876543 344444455678999999988776653 3 5888898876643 3443456678
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC---cEEEEEcCCCCce
Q 005123 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG---SIFHWLVGHETPQ 390 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---~I~Iwd~~~~~~~ 390 (713)
.+.|++++++|+.++.++ .|.+||+.++... .+... .......|++ +++.|+..+.++ .+++.+.+ +. .
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~~-g~-~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAP-NGRMILYATTRGGRGVLGLVSTD-GR-F 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECC-CCCEEEEEEeCCCcEEEEEEECC-Cc-e
Confidence 889999999999888776 7999999875543 23222 2345668999 566665555543 34444432 22 2
Q ss_pred EEEecccCCCeEEEEEc
Q 005123 391 VEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~s 407 (713)
...+....+.+..++|+
T Consensus 401 ~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 401 RARLPLGNGDVREPAWS 417 (417)
T ss_pred eeECCCCCCCcCCCCCC
Confidence 23333334556655553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=130.13 Aligned_cols=259 Identities=14% Similarity=0.250 Sum_probs=184.1
Q ss_pred CCcEEEEeCCCCceEE---EEeccCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEEcCCCceeeeeccCC------CCe
Q 005123 165 SGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSH---NDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK------ESV 231 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~---~l~~h~~~V~sl~~sp---dg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~------~~V 231 (713)
.|.+.+|++.+.+... ......+.+..+.|.. ++. .|+.+..+|.|.++..........++... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678999987755433 2223456677788864 445 56677788999999876554444443321 124
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE--EEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceEEE
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKS-GRELCS 307 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~--~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t-~~~~~~ 307 (713)
.++.|+..+..++++..+|.+.+.+........ ..+.|+..+...+|+. +.+++.+|++|+.+..||+|. ++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 577888889999999999999977765554444 7788999999999986 457899999999999999993 344433
Q ss_pred -EccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 308 -FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 308 -~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.+.|...|.+|.-++ ++.+|++|+.|-.|++||.|+ ++.+..-. -.+.|+.+.++|.....|+.++.-.-.+|.+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 456888899998887 678999999999999999995 55555443 34789999999965555555555556777777
Q ss_pred CCCCce----EEEecccCCCeEEEEEcCCCcEEEE---eCCcEE-EEe
Q 005123 385 GHETPQ----VEIHNVHDNTVWDLAWHPIGYLLCS---NDHTTK-FWC 424 (713)
Q Consensus 385 ~~~~~~----~~~~~~h~~~V~~l~~spdg~~laS---~Dg~v~-iWd 424 (713)
+.+... ......|.+-+..-.|.....++++ .|+.++ +|-
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 554433 3455667777777788554445543 777755 774
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-12 Score=141.35 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=155.1
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.|.++|.+..+ ...+..+...+.+.+|++||+.|+..+.+ ..|.+||+.+++.... ......+....|++|++.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 47788877554 34555677789999999999998866543 3688999988865443 3334456678999999988
Q ss_pred EE-EECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CS-CSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as-~s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+. .+.++ .|++||+.+++.. .+..+........|++|++.|+..+. ++ .|+++|+.+++...... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 74 44444 6888899877543 34445556677899999998877664 33 58888888776433222 2233456
Q ss_pred EEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCc--EEEEEcCCCCceE
Q 005123 318 VKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWLVGHETPQV 391 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~--I~Iwd~~~~~~~~ 391 (713)
..|++||++|+..+.++ .|.+||+.+++...... ........|++ +++.|+..+ .++. |++++++.. ..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~--~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGR--VR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--ce
Confidence 78999999998776532 58899998876433222 22223568999 566655544 4443 566666332 22
Q ss_pred EEecccCCCeEEEEEcCC
Q 005123 392 EIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spd 409 (713)
..+..+.+.+...+|++-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 333344566777888763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=134.07 Aligned_cols=219 Identities=15% Similarity=0.219 Sum_probs=167.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCC-EEEEEeCC--CcEEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDN-WMVSGDDG--GAIKYWQ 214 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~-~L~sgs~D--G~I~vwd 214 (713)
....+|..++.. ...|++|..+|.+.+|..+.+. ....+.. ...+..+.-++... ++++|+.. ..++|||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeee
Confidence 344555555554 3368899999999999987432 2222322 24555666665554 45568888 8899999
Q ss_pred cCCCceeeeeccC---------CCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCe-eEEEEccCCCceEEEEEcCCC
Q 005123 215 NNMNNVKANKSAH---------KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 215 l~~~~~~~~~~~~---------~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl~~spdg 282 (713)
++..+.+..-+.. .-.++++.|.+. ...|++++.-+.|++||.+.+. .+..+...+..|+++...+++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 9988555443321 124678889887 7889999999999999998654 467777778899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~ 361 (713)
++|++|..-+.|..||+++++.+.. +.+..+.|++|..++...+|++++-|+.|||+|+.+.+.+.... -...+++|.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il 338 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFIL 338 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEE
Confidence 9999999999999999999998776 88899999999999999999999999999999999866554332 234566666
Q ss_pred EeC
Q 005123 362 WHP 364 (713)
Q Consensus 362 fsp 364 (713)
+.+
T Consensus 339 ~~~ 341 (412)
T KOG3881|consen 339 LRD 341 (412)
T ss_pred ecC
Confidence 654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=139.72 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=181.8
Q ss_pred cCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE
Q 005123 185 HDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~ 263 (713)
+....+.|..++||+||+ +|...-.|+|||+....+..........|.-..++.|-..++.-..|.+|-+..--.....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 566788999999999876 6667789999999887766554333445555555666666777777877766542211111
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
..+ ...-.+++++.-..-|++++....|+-+++..|+.+..+....+.+++|..++...+|++|+.+|.|.+||-++
T Consensus 130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 111 12334566665334455555567799999999999999988889999999999989999999999999999998
Q ss_pred CeeEEEeec------CC-----CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC--C
Q 005123 344 MKELESFRG------HR-----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--G 410 (713)
Q Consensus 344 ~~~l~~~~~------h~-----~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g 410 (713)
...+.++.. |. ..|+++.|+. ++-.+++|+.+|.|.|||++.....+.......-.|..|.|... .
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 766655542 22 2499999997 68899999999999999999998887777667789999999776 4
Q ss_pred cEEEE-eCCcEEEEecCCCCCcc
Q 005123 411 YLLCS-NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 411 ~~laS-~Dg~v~iWd~~~~~~~~ 432 (713)
..++| +...++|||-.......
T Consensus 286 ~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 286 NKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred ceEEecchHHhhhcccccCCcee
Confidence 66666 77889999986655433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=125.79 Aligned_cols=261 Identities=11% Similarity=0.147 Sum_probs=173.8
Q ss_pred CceEEEEEccCCCEEEEEEC----CCcEEEEeCCCC--ce--EEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 005123 145 CSINRVLWTPTGRRLITGSQ----SGEFTLWNGQSF--NF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQN 215 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~----dg~V~Iwd~~t~--~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl 215 (713)
.....+++++++++|+++.+ ++.|..|++... ++ +............+++++++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566889999999999877 468988887653 32 3333334556678999999999998874 899999999
Q ss_pred CCC-ceeeee--c-----------cCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCe--eE--EEEc-cCCCceEE
Q 005123 216 NMN-NVKANK--S-----------AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQ--EE--RSLT-GHGWDVKS 275 (713)
Q Consensus 216 ~~~-~~~~~~--~-----------~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~--~~--~~l~-~h~~~V~s 275 (713)
+.. .+.... . .......++.|++++++++++.. ...|++|++.... .. ..+. .....-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 874 332221 1 12345778999999999888754 4589999997654 21 2222 34567889
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECC--CCce--EEEEcc------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 005123 276 VDWHPTKSLLVSGGK-DSLVKLWDAK--SGRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 343 (713)
Q Consensus 276 l~~spdg~~L~sgs~-Dg~I~IwDl~--t~~~--~~~~~~------h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t 343 (713)
++|+++++++++..+ +++|.+|++. +++. +..+.. .......|++++||++|+++. .++.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999998876654 6779999888 4432 222221 122578899999999998876 466899999942
Q ss_pred --C--eeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEec--ccCCCeEEEEE
Q 005123 344 --M--KELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAW 406 (713)
Q Consensus 344 --~--~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~ 406 (713)
+ +.+..+.......+.+++++ ++++|+++. .++.|.+|+++.....+.... ..-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 34455554456689999999 566666555 677899998864443333322 23456667766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=133.25 Aligned_cols=271 Identities=12% Similarity=0.202 Sum_probs=173.4
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-----eCC-----CcEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-----DDG-----GAIKYW 213 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-----s~D-----G~I~vw 213 (713)
...++..+++++|+++|.+. +..|+|++..+...+.+... ..+.++.|+|.+++|.+- ..+ -.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477888999998777766 55899999888764444333 388999999999998762 122 347799
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEE------------------
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS------------------ 275 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~s------------------ 275 (713)
+++++.....+......-+++.|+.|+.+.+-- ..+.|.+||+.+.+.+... -|...|+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEccC
Confidence 999854444443333333577787776543322 2345777776543221111 12223333
Q ss_pred ----------------------------------EEEcCCCC-EEEEEe--CC---------CcEEEEECCCCceEEEEc
Q 005123 276 ----------------------------------VDWHPTKS-LLVSGG--KD---------SLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 276 ----------------------------------l~~spdg~-~L~sgs--~D---------g~I~IwDl~t~~~~~~~~ 309 (713)
+.|+.-+. +|+.++ -| .+++++++....++..+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 34444333 222211 12 235555555323333332
Q ss_pred cCCCCeEEEEEcCCCCEEEE--EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEc
Q 005123 310 GHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLV 384 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Lat--gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~ 384 (713)
..+.|.++.|+++++-|++ |..-.++.|||++ ++.+..|. .+.-.++-|+| .+++|+.++.+ |.|.|||+
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEec
Confidence 4788999999999987764 5577789999998 66666553 56668899999 88988888764 78999999
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCcEE--EE------eCCcEEEEecCC
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLL--CS------NDHTTKFWCRNR 427 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l--aS------~Dg~v~iWd~~~ 427 (713)
.+.+ .+....+ ..-+-+.|+|||.++ |+ .|+.++||++..
T Consensus 344 ~n~K-~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 344 PNRK-LIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cchh-hcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 8744 3333332 334567999999665 33 799999999854
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=138.92 Aligned_cols=235 Identities=14% Similarity=0.077 Sum_probs=152.0
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.|.++|....+. +.+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++.... ..........+|++|++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778665443 455666778999999999998886643 33 588889888765332 2233445578999999987
Q ss_pred EE-EECCCe--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CS-CSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as-~s~Dg~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+. .+.++. |++||+.+++. ..+..+...+...+|++|++.|+..+. ++ .|+++|+++++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 75 455664 88889887654 344445556778999999998877664 33 4777788877654332 22233456
Q ss_pred EEEcCCCCEEEEEECC-C--eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc--EEEEEcCCCCceEE
Q 005123 318 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVE 392 (713)
Q Consensus 318 i~fspdg~~Latgs~D-g--~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~--I~Iwd~~~~~~~~~ 392 (713)
.+|++||++|+..+.+ + .|.++|+.+++... +... .......|++++..++++...++. |++++.+ +. ...
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~-~~~ 430 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GR-FKA 430 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC-ceE
Confidence 7999999999876653 3 46678888776432 2222 122345799944444444545554 5666653 32 334
Q ss_pred EecccCCCeEEEEEcCC
Q 005123 393 IHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 393 ~~~~h~~~V~~l~~spd 409 (713)
.+..+.+.+...+|+|-
T Consensus 431 ~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 431 RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ECcCCCCCcCCCccCCC
Confidence 44445567788888863
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-11 Score=131.23 Aligned_cols=270 Identities=11% Similarity=0.087 Sum_probs=173.6
Q ss_pred CEE-EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 157 RRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 157 ~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
+++ ++-..++.|.|.|..+.+.+.++......-..++|++|++++++++.||.|.++|+.+.+.+.++.. .....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 344 4455689999999999999999987554445678999999999999999999999999999888765 44578899
Q ss_pred EecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEcc-------CCCceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceEE
Q 005123 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGRELC 306 (713)
Q Consensus 236 fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~t~~~~~ 306 (713)
+++||+++++++ .++.|.++|.++.+.++.+.. ....+..|..++....+++.-.| +.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988765 689999999999988887753 23467888888888866665554 788888987755432
Q ss_pred -EEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeec----CCCCeEEEE-------EeCC-CCCEEEE
Q 005123 307 -SFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG----HRKDVTALA-------WHPF-HEEYFVS 372 (713)
Q Consensus 307 -~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl~-------fsp~-~~~~las 372 (713)
+............|+++++|++++ ..+..|-++|.++++.+..+.. |...+..+- |... .+...++
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 233345667889999999998765 4667899999999888766542 223333221 2110 1222222
Q ss_pred EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE------eCCcEEEEecCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS------NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS------~Dg~v~iWd~~~~~ 429 (713)
.-....+.+||..+.+.+..+. ..... .-+..+|++.++.. .++.|.|+|.+..+
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred cccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 2223356667776555444443 33444 77889999977753 45899999987663
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-10 Score=124.13 Aligned_cols=272 Identities=11% Similarity=0.136 Sum_probs=178.3
Q ss_pred EEEEECC----CcEEEEeC--CCCceEEEE-eccCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCC--c--eeee
Q 005123 159 LITGSQS----GEFTLWNG--QSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD----GGAIKYWQNNMN--N--VKAN 223 (713)
Q Consensus 159 Latgs~d----g~V~Iwd~--~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~----DG~I~vwdl~~~--~--~~~~ 223 (713)
+++|+.+ +.|++|++ +++++...- .........+++++++++|+++.+ ++.|..|++... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5566665 67888877 444443222 123456678899999999998877 478999988764 2 2333
Q ss_pred eccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCC-CeeEEE---Ec----------cCCCceEEEEEcCCCCEEEEE
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFAR-CQEERS---LT----------GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~-~~~~~~---l~----------~h~~~V~sl~~spdg~~L~sg 288 (713)
..........+++++++++|+++.. +|+|.++++.. +..... +. .......++.|+|++++|++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3334556678999999999998874 89999999976 333222 11 123457899999999988887
Q ss_pred eC-CCcEEEEECCCCc--eE--EEE-ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCe--eEEEeecC----
Q 005123 289 GK-DSLVKLWDAKSGR--EL--CSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR--AMK--ELESFRGH---- 353 (713)
Q Consensus 289 s~-Dg~I~IwDl~t~~--~~--~~~-~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~--t~~--~l~~~~~h---- 353 (713)
.. ...|++|+++... .. ..+ ......-..++|+++++++++.. .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 54 3469999987654 21 122 23455678999999999887665 56789999988 443 23333211
Q ss_pred --CCCeEEEEEeCCCCCEE-EEEECCCcEEEEEcCCCCceEE---EecccCCCeEEEEEcCCCcEEEE---eCCcEEEEe
Q 005123 354 --RKDVTALAWHPFHEEYF-VSGSLDGSIFHWLVGHETPQVE---IHNVHDNTVWDLAWHPIGYLLCS---NDHTTKFWC 424 (713)
Q Consensus 354 --~~~V~sl~fsp~~~~~l-asgs~DG~I~Iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~~laS---~Dg~v~iWd 424 (713)
......|++++ ++++| ++...++.|.+|+++.....+. ........-+.+++++++.+|.. .++.|.+|+
T Consensus 242 ~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578999999 55555 4555677899999954322222 22222345889999999977643 788999999
Q ss_pred cCCCCCc
Q 005123 425 RNRPGDT 431 (713)
Q Consensus 425 ~~~~~~~ 431 (713)
++.....
T Consensus 321 ~d~~tG~ 327 (345)
T PF10282_consen 321 IDPDTGK 327 (345)
T ss_dssp EETTTTE
T ss_pred EeCCCCc
Confidence 9754433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-12 Score=138.64 Aligned_cols=273 Identities=14% Similarity=0.219 Sum_probs=196.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---------------ceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
......|++|+.+..+||+|+.||.++|..+.+. ....++.+|+..|..+.|+.+...|-+++.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567899999999999999999999999976542 1234678999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE-EEEccCCCceEEEEEcCCCCE
Q 005123 208 GAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~-~~l~~h~~~V~sl~~spdg~~ 284 (713)
|.|.||-+-.+.-.... ...++.|.+++|+.||..|+....||.|.|=.++....- +.++ ..-...+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHH
Confidence 99999988776533222 345677999999999999999999999988776544321 1122 223457899999999
Q ss_pred EEEEeCCCcEEEEECCCCc-------e-EE---EEccCCCCeEEEEEc--------CCCCEEEEEECCCeEEEEECCCCe
Q 005123 285 LVSGGKDSLVKLWDAKSGR-------E-LC---SFHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~-------~-~~---~~~~h~~~I~si~fs--------pdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
++.+-.+|.+.+||....- + +. .+......|..+.|. ||.-.|+++..+|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 9999999999999975321 1 11 112223346677775 367789999999998887655443
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCC---------cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDG---------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---------~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS- 415 (713)
.-..+. ..-.|..+.|++ ++.+|++++.|. .|.+|.- -...+..+......|++++|-..|..++-
T Consensus 251 ~Pvv~d-tgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 251 EPVVVD-TGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CCeEEe-cccEeecceecC-CCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 333333 336788999999 899999888753 3444432 22344455556778999999887755543
Q ss_pred eCCcEE
Q 005123 416 NDHTTK 421 (713)
Q Consensus 416 ~Dg~v~ 421 (713)
.|+.|.
T Consensus 327 vdsfiy 332 (1189)
T KOG2041|consen 327 VDSFIY 332 (1189)
T ss_pred ecceEE
Confidence 444433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-12 Score=133.02 Aligned_cols=276 Identities=14% Similarity=0.186 Sum_probs=189.3
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--------------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-------------- 208 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG-------------- 208 (713)
..-++..++|||.|++|++....+ |.+|+...+..+..+. ...|..+.|+|++++|.+-++..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 556789999999999999887765 9999988776544443 46799999999999999865443
Q ss_pred -cEEEEEcCCCceeeeeccCC---------------------------------------------CCeeEEEEecCC--
Q 005123 209 -AIKYWQNNMNNVKANKSAHK---------------------------------------------ESVRDLSFCRTD-- 240 (713)
Q Consensus 209 -~I~vwdl~~~~~~~~~~~~~---------------------------------------------~~V~~l~fs~dg-- 240 (713)
.+.|||+.++.++..+.... ..|...+|++.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 49999998887665543222 234444555532
Q ss_pred CEEEE-----EECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCce
Q 005123 241 LKFCS-----CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-----------KDSLVKLWDAKSGRE 304 (713)
Q Consensus 241 ~~Las-----~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-----------~Dg~I~IwDl~t~~~ 304 (713)
..||. ...++.++||.+..+..+....-....-..+.|...|++|++-. .+.+++|+++....
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~- 266 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS- 266 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-
Confidence 22222 23355667777665555444333333445678888888766532 13568888887433
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC---CcE
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSI 379 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latg--s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D---G~I 379 (713)
+.......+.|...+|+|+++.+++. ..+..+.++|++.. ....+ ....-..+.|+| .+++++.++.| |.|
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF~nl~gni 342 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGFDNLQGNI 342 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEEEEecCCccccce
Confidence 33333568899999999988877754 47889999999954 33333 344456788999 78888887765 679
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE----E----eCCcEEEEecCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC----S----NDHTTKFWCRNRP 428 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la----S----~Dg~v~iWd~~~~ 428 (713)
.|||......++..+.+ ....-+.|++|+.++- | .|+.|+||++...
T Consensus 343 ~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 343 EIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 99998776666644443 2344568999996653 1 7899999998544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=127.29 Aligned_cols=155 Identities=17% Similarity=0.368 Sum_probs=113.9
Q ss_pred EEEEEccCCCEEEEEeC----------CCcEEEEEcCCCc-eeeeec-cCCCCeeEEEEecCCCEEEEEE--CCCeEEEE
Q 005123 190 RSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNN-VKANKS-AHKESVRDLSFCRTDLKFCSCS--DDTTVKVW 255 (713)
Q Consensus 190 ~sl~~spdg~~L~sgs~----------DG~I~vwdl~~~~-~~~~~~-~~~~~V~~l~fs~dg~~Las~s--~Dg~I~iw 255 (713)
..+.|+++|++|++-.. -+...||.++..+ ....+. ...+.|.+++|+|+++.|+++. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987774332 1345566553322 222222 2345699999999999976654 56799999
Q ss_pred EcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
|++ .+.+..+. ...++.|.|+|+|++|++++.+ |.|.+||+++.+.+.+++ | ..++.++|+|||++|++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55555553 4678899999999999998754 569999999888887765 3 34789999999999998874
Q ss_pred ------CCeEEEEECCCCeeEEEe
Q 005123 333 ------DQIIKLYDIRAMKELESF 350 (713)
Q Consensus 333 ------Dg~I~IwDl~t~~~l~~~ 350 (713)
|..++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6789999985 6666544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=150.51 Aligned_cols=267 Identities=16% Similarity=0.222 Sum_probs=187.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe------cc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------AH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~------~h--~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+++..+-. ++|++|. .-.|.+||+.++..+..+. .| ++.+. -.+.+++++..-+.+.+-+...
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchhh
Confidence 444444443 5666554 3469999998876654432 23 01110 0234455555444443322211
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc----eEEEEEcCCCCEEEEEeCCCc
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----VKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~----V~sl~~spdg~~L~sgs~Dg~ 293 (713)
. .+....+.|....+..+++.++..+.++.+.+||.........+...+.. ..-+-++.+.-++++|+.-+.
T Consensus 81 ~----~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 Q----IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred h----hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1 11223345555666668888999999999999999877666555432221 222334556668999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|.+|+....+.-..+.+|.+.|.++.|+.||+++++.++|+++++|++.+.+.+. ..-+|...|..++|++ + .|++
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEE
Confidence 9999988544444688999999999999999999999999999999999988776 5667999999999987 4 9999
Q ss_pred EECCCcEEEEEcCCCCceEEEecccC-CCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
++.|.+.++|+.+.. ..+.+..|. ..|+.++...+..++.+ .|+.+++|++...+
T Consensus 234 ~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999976433 333555554 57999999998866654 99999999986543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-12 Score=139.66 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=153.0
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG--~I~v 212 (713)
.+..+...+...+|+|||++|+..+.+ ..|++||+.+++... +....+.+.+.+|++||+.|+ +.+.+| .|.+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 355677789999999999999877644 369999998876543 333445566789999999887 444555 5888
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C--CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D--TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D--g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+++++... +..+........|++|++.|+..+. + ..|+++|+.+++..... ..........|++++++|+..+
T Consensus 272 ~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEE
Confidence 8998876544 3445555677899999998877664 3 36888888777643322 2223345678999999998877
Q ss_pred CCC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 290 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 290 ~Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
.++ .|.+||+.+++... +.. ........|++||++|+..+.+ ..|+++++. +.....+..+.+.+...+|+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred ccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence 543 48889998876533 322 2233457899999999877654 357777875 44444555556677788887
Q ss_pred C
Q 005123 364 P 364 (713)
Q Consensus 364 p 364 (713)
+
T Consensus 427 ~ 427 (430)
T PRK00178 427 P 427 (430)
T ss_pred C
Confidence 6
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-12 Score=139.58 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=152.7
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEE-EeCCC--cEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGG--AIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~DG--~I~v 212 (713)
.+..+...+.+.+|++||++|+.++.+ ..|++||+.+++... +..+...+.+++|++|++.|+. .+.++ .|.+
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 345566779999999999999987754 479999998876543 3445666778999999997764 44444 5888
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-C--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
||+.++..... ..+........|++|+++|+.++.. + .|++||+.+++.. .+..+...+..+.|++++++|+.++
T Consensus 263 ~d~~~~~~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 263 MDLDGKQLTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCEEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEE
Confidence 89887765433 3344445677899999988776653 3 6888888776543 3444556678899999999999988
Q ss_pred CCC---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 290 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 290 ~Dg---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.++ .|.+||+.++... .+.. .......+|++|+++|+..+.++ .+++.+.. ++....+......+..++|
T Consensus 341 ~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 876 7999999875543 3322 22345678999999998877654 45565644 4445555544455555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-12 Score=125.08 Aligned_cols=155 Identities=19% Similarity=0.336 Sum_probs=112.8
Q ss_pred EEEEEccCCCEEEEEEC----------CCcEEEEeCCC-CceEEEEec-cCCCEEEEEEccCCCEEEEE--eCCCcEEEE
Q 005123 148 NRVLWTPTGRRLITGSQ----------SGEFTLWNGQS-FNFEMILQA-HDHAIRSMVWSHNDNWMVSG--DDGGAIKYW 213 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~----------dg~V~Iwd~~t-~~~~~~l~~-h~~~V~sl~~spdg~~L~sg--s~DG~I~vw 213 (713)
..+.|+++|++|++-.. -+...||.++. ......+.. ..+.|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45779999988775433 13344554422 223334433 34579999999999987654 456899999
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
|++ .+.+..+ ....++.|.|+|+|++|++++. .|.|.+||+++.+.+.... | ..++.++|+|||++|++++.
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 4444444 3567889999999999999875 3679999999888877665 3 35789999999999999874
Q ss_pred ------CCcEEEEECCCCceEEEE
Q 005123 291 ------DSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 291 ------Dg~I~IwDl~t~~~~~~~ 308 (713)
|+.++||+.. |+.+.+.
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6666543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-11 Score=134.38 Aligned_cols=238 Identities=14% Similarity=0.126 Sum_probs=151.7
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE---EEEeCCC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCC
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM---VSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L---~sgs~DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg 240 (713)
..|.+.|....+. +.+......+.+-+|+|||+.+ ++...+| .|.+.++.+++.... ..........+|++||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 3677788766544 3455556667788999999752 3455544 477778877764433 3344555678999999
Q ss_pred CEEEEEEC-CC----eEEEEEcCCC---eeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CceEEEE
Q 005123 241 LKFCSCSD-DT----TVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLW--DAKS-GRELCSF 308 (713)
Q Consensus 241 ~~Las~s~-Dg----~I~iwDl~~~---~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~Iw--Dl~t-~~~~~~~ 308 (713)
+.|+..+. +| .+.+||+..+ +...............+|+|||+.|+..+ .++...|| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99887653 22 3444776642 22223322233456789999999888766 45654444 5542 3334445
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE-EEEC--CCcEEEE
Q 005123 309 HGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSL--DGSIFHW 382 (713)
Q Consensus 309 ~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la-sgs~--DG~I~Iw 382 (713)
......+....|||||++|+..+.+ ..|++||+.+++...... ....+....|++ +++.|+ ++.. +..|++|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 4455567889999999999877643 369999999887644332 344677899999 566555 4443 3468888
Q ss_pred EcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 383 LVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
|+..+.. ..+. ...+.+...+|++.
T Consensus 401 dl~~g~~-~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKT-RKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCE-EEee-cCCCcccCceecCC
Confidence 8865542 2232 23456777888864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=138.10 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=148.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEE-EeCCCc--EEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGA--IKYW 213 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~DG~--I~vw 213 (713)
+..+...+.+.+|+|||++|+..+.+ ..|++||+.+++... +..........+|++||+.|+. .+.+|. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 34455677899999999999876543 258899998876533 3333344557899999998874 566665 7777
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
|+++++... +..+...+...+|++|++.|+..+. ++ .|+++|+.+++.... ..........+|++|+++|+..+.
T Consensus 292 dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEe
Confidence 888776544 3344556678899999998877654 33 577778877654432 222333456799999998888765
Q ss_pred C-C--cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 291 D-S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 291 D-g--~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D-g--~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
+ + .|.++|+.+++... +... .......|++||+.|+..+.+ + .|+++|++ ++....+..+.+.+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 46667888776433 3222 223356899999998876543 3 47778874 666666766667788888887
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=131.92 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=157.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeecc---CCCCeeEEEEe--------------------cCCCEEEEEECCCeEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFC--------------------RTDLKFCSCSDDTTVK 253 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~---~~~~V~~l~fs--------------------~dg~~Las~s~Dg~I~ 253 (713)
...++|....||.++|||...++....+.. ..+..++..|. .+-..|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 457899999999999999998877665532 23445555552 2334577888899999
Q ss_pred EEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE
Q 005123 254 VWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 254 iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs 331 (713)
+|++..++....+. .|.+.|+++.++.+-..|.+++.|..+..|+..+.+.++.++.....+.++++++|++.|++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999998887775 5889999999999889999999999999999999999999999999999999999999999886
Q ss_pred CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC-----CCCEEEEEECCCcEEEEEcCC
Q 005123 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF-----HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 332 ~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~-----~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+.|++||+++.+.+..|.+|.+.|+++.|.-. +..+|.+...+..|.+|-++.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 57999999999999999999999999999773 244555666677788897754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-11 Score=134.06 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=147.2
Q ss_pred eCCCCCceEEEEEccCCCEEE---EEECC--CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CC----c
Q 005123 140 LNKNRCSINRVLWTPTGRRLI---TGSQS--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG----A 209 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~La---tgs~d--g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG----~ 209 (713)
|......+.+-+|+|||+.++ +...+ ..|++.++.+++.. .+....+.....+|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 444556677889999997532 34334 35888898877644 33334556667899999998886553 23 3
Q ss_pred EEEEEcCCC---ceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEE--EcCC-CeeEEEEccCCCceEEEEEcCCC
Q 005123 210 IKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVW--DFAR-CQEERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 210 I~vwdl~~~---~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iw--Dl~~-~~~~~~l~~h~~~V~sl~~spdg 282 (713)
+.+|++..+ +...........+...+|++||+.|+..+ .+|...|| ++.. +.....+......+.+..|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444676653 32333222233456789999999887765 45654455 4432 23344455455677889999999
Q ss_pred CEEEEEeCC---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeeEEEeecCCCC
Q 005123 283 SLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 283 ~~L~sgs~D---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
++|+..+.+ ..|.+||+.+++...... ....+....|++||++|+..+. +..|++||+.+++...... ....
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCc
Confidence 998877653 369999999887654333 3446778999999998886543 3468999998776544443 4455
Q ss_pred eEEEEEeC
Q 005123 357 VTALAWHP 364 (713)
Q Consensus 357 V~sl~fsp 364 (713)
+...+|+|
T Consensus 417 ~~~p~Ws~ 424 (428)
T PRK01029 417 KRFPSWGA 424 (428)
T ss_pred ccCceecC
Confidence 67788887
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=127.94 Aligned_cols=240 Identities=15% Similarity=0.347 Sum_probs=170.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----eeeeeccC------------CCCeeEEEEecCCC--EEEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTDL--KFCSC 246 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----~~~~~~~~------------~~~V~~l~fs~dg~--~Las~ 246 (713)
.+-|.+|.|..+|++|++|+.+|.|.++.-+... ....+..| .+.|+.+.|..+++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999644322 22222222 35688899988664 57788
Q ss_pred ECCCeEEEEEcCCCeeEE-----------------------------------E-EccCCCceEEEEEcCCCCEEEEEeC
Q 005123 247 SDDTTVKVWDFARCQEER-----------------------------------S-LTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 247 s~Dg~I~iwDl~~~~~~~-----------------------------------~-l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+.|.+|++|.+....... . -.+|..-|++|+++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999874321110 0 024777799999999999888775
Q ss_pred CCcEEEEECCCCc-e--EEEEccC-----CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeE----EEe-------
Q 005123 291 DSLVKLWDAKSGR-E--LCSFHGH-----KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL----ESF------- 350 (713)
Q Consensus 291 Dg~I~IwDl~t~~-~--~~~~~~h-----~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l----~~~------- 350 (713)
|=.|.+|+++--. . +..++.+ ..-|++..|+| ..++|+..++.|+|+|.|+|..... +.|
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999986422 2 2222322 24588999999 4678889999999999999843221 111
Q ss_pred -----ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC------------CCe---EEEEEcCCC
Q 005123 351 -----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD------------NTV---WDLAWHPIG 410 (713)
Q Consensus 351 -----~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~------------~~V---~~l~~spdg 410 (713)
..--..|..+.|+. +++++++-+.- +|++||++.....+.....|. +.| ..++|+.++
T Consensus 264 ~rsffseiIsSISDvKFs~-sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSH-SGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEcc-CCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11224688999998 88999887654 899999987777666665554 222 468899998
Q ss_pred cEEEE--eCCcEEEEecCCC
Q 005123 411 YLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 411 ~~laS--~Dg~v~iWd~~~~ 428 (713)
.++.+ ..+.+++|+..+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 66654 8899999995443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-11 Score=129.15 Aligned_cols=254 Identities=13% Similarity=0.058 Sum_probs=170.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEE-EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe--
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS-MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV-- 231 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~s-l~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V-- 231 (713)
++..+++++.++.|+.+|..+++.+-...... .+.+ ... .++.+++++.+|.|..||.++++.+.........+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 46788889999999999999998876655332 2222 222 35677778889999999999998877654433211
Q ss_pred ---eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC----c------e-EEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 232 ---RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW----D------V-KSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 232 ---~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~----~------V-~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+..+ .+..++.++.++.|..+|.++++.+........ . + .+..+ .+..+++++.++.++.|
T Consensus 181 ~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 181 RGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred cCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEE
Confidence 11122 234677888899999999999877654321100 0 1 11112 25678888889999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~D 376 (713)
|.++++.+..... ........ ++..|++++.||.|..+|..+++.+....... ..+.+... .+..|++++.+
T Consensus 257 d~~tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCC
Confidence 9999988776552 11222222 56788888899999999999998887663222 22233333 34678889999
Q ss_pred CcEEEEEcCCCCceEEEecccCC-CeEEEEEcCCCcEEEEeCCcEEEE
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSNDHTTKFW 423 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~laS~Dg~v~iW 423 (713)
|.|++||.++++...+.. .+.. ...+.++..+..++++.||.|..|
T Consensus 330 G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLK-TDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEE-cCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 999999998876554443 3333 344455666777778899999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=128.57 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=173.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
++.|++++.++.|+.+|..+++.+-.............. ++..+++++.+|.|..+|.++++++....... .+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 668889999999999999999887666544432223333 56788888999999999999998877654332 222211
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 236 fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-----~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
.. .+..++.++.++.|+.||.++++.+..+......+ .+..+. +..++++..++.|..+|.++++.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 34567778889999999999998877765432211 111222 34778888899999999999987755431
Q ss_pred CCC----C------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 311 HKN----M------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 311 h~~----~------I-~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
... . + .+..+ .+..+++++.++.++.||.++++.+...... ....... .+..|++++.||.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeE
Confidence 100 0 0 11112 3567888889999999999999887766521 1222332 34567777899999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCccc
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~~~ 433 (713)
+.+|..+++.+.+........+.+.....+..++.+.||.|.+||.+..+...+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 999998776544332211222333334444344456899999998766544433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=130.05 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=157.7
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceEEEEec---cCCCEEEEEEc------c--------------CCCEEEEEeCCCcE
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWS------H--------------NDNWMVSGDDGGAI 210 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~---h~~~V~sl~~s------p--------------dg~~L~sgs~DG~I 210 (713)
+-..++|....||.++|||..+.+....+.. -++..++..|. + |...|+.|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3457899999999999999998877666542 23444555552 1 33567888899999
Q ss_pred EEEEcCCCceeeeec--cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 211 KYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~--~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+...+..++...+....+.++++++|++.|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887775 688999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCC-----CCEEEEE-ECCCeEEEEECCC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GNWVLTA-SKDQIIKLYDIRA 343 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspd-----g~~Latg-s~Dg~I~IwDl~t 343 (713)
+ +.|++||+++++.+.+|.+|.+.|+++.|-.+ |++|+++ ..+..|.+|-++.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 78999999999999999999999999999876 6777654 4556677776654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=143.89 Aligned_cols=196 Identities=16% Similarity=0.168 Sum_probs=160.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC----eeEEEEecCCCEEEEEECCCeEEEEEcCCCee
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES----VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~----V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~ 262 (713)
+.|....+..+.+.++.++.+..+.+||...+.+...+...... ..-+.++.+.-++++++.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44445666667889999999999999999887766655332221 22233456777899999999999999874333
Q ss_pred EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 263 ~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
-..+.+|++.|.++.|+-||.++++.|+|.++++|++++.+... ..-+|...|..++|.++ +|++++.|-++++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 34688999999999999999999999999999999999988766 56679999999999988 8999999999999976
Q ss_pred CCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 342 RAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 342 ~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+ ++.+.+++.|. +.|..++... +.-.++|++.|+.+++||+..
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 6 66677888886 5699999988 788999999999999999843
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=125.12 Aligned_cols=246 Identities=16% Similarity=0.287 Sum_probs=183.8
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEe-CCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd-~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
...++||.+.|++...-+...-+++.+.|.+++||- .+.++.-..+. .-...++++.+..+...|++|-++|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 456789999999999999888899999999999995 33343333332 2357899999999999999999999998886
Q ss_pred cC----CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 215 NN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 215 l~----~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+. .....+....|...|..+.|+.....+++++.|..+.---.+.+..+..+. .....+++.+.-. +..+|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEeccc
Confidence 54 334556667899999999999999999999998766544444443332221 0111112222111 4555666
Q ss_pred CCcEEEEEC--CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCC
Q 005123 291 DSLVKLWDA--KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 291 Dg~I~IwDl--~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~ 367 (713)
.|.|.+..+ ..-..+.++.+|.+.+++++|.+....|++|.+|..|.+||+--.+- ..++.+|...|..+.... .-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence 666655543 34567888999999999999999999999999999999999975443 466778999999888776 67
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 005123 368 EYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~ 386 (713)
..+++++.||.|.+|+.+.
T Consensus 253 ~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccCCCeEEEEeccc
Confidence 8899999999999999853
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=134.35 Aligned_cols=253 Identities=19% Similarity=0.248 Sum_probs=183.8
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-ccCCCCeeEEEEec--CCCEEEEEECCCeEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVK 253 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~ 253 (713)
.+...|..|.+.|..|.|...|..|++++.|..|.+||+.....+..+ .+|...|....|.| +...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345678889999999999999999999999999999999888765544 56888887777876 446799999999999
Q ss_pred EEEcCC-Cee--EEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEE---ccCCC---CeEEEEEcCC
Q 005123 254 VWDFAR-CQE--ERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKN---MVLCVKWNQN 323 (713)
Q Consensus 254 iwDl~~-~~~--~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~---~~h~~---~I~si~fspd 323 (713)
+=.+.. +.. ...+..|.+.|..++..|+ -+.|.+++.|+.+.-+|++.+....++ +.+.. ....|+..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 987643 222 3455678999999999985 457899999999999999986643333 22223 4678888885
Q ss_pred C-CEEEEEECCCeEEEEECCCCee------EEEeec------CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc-
Q 005123 324 G-NWVLTASKDQIIKLYDIRAMKE------LESFRG------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP- 389 (713)
Q Consensus 324 g-~~Latgs~Dg~I~IwDl~t~~~------l~~~~~------h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~- 389 (713)
. ..+++++.|-.++|||.+.... +..|.. ....|++++|+.+.+.+|++ -.|-.|++|.-..+..
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceEEeccccccCC
Confidence 4 5889999999999999875322 233322 22469999999745555555 4566888885533221
Q ss_pred -----------eEEEecccCC--CeEEEEEc-CCCcEEEE--eCCcEEEEecCCCCC
Q 005123 390 -----------QVEIHNVHDN--TVWDLAWH-PIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 390 -----------~~~~~~~h~~--~V~~l~~s-pdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
...++++|.+ .|..+.|- |...+++| +-|.|.||+.+....
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 1223566653 57777765 55566655 779999999765443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=117.03 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=166.7
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC----------CCcEEEEEcCCCceeeeeccC-------C
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNNVKANKSAH-------K 228 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~----------DG~I~vwdl~~~~~~~~~~~~-------~ 228 (713)
+.|.|.|..+.+.+..+......- .+ +++|++.|+++.. +..|.|||+.+.+.+..+..- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999988887654443 34 9999998887655 789999999999988877542 2
Q ss_pred CCeeEEEEecCCCEEEEEE-C-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceE
Q 005123 229 ESVRDLSFCRTDLKFCSCS-D-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GREL 305 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s-~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-~~~~ 305 (713)
..-..+++++||++|++.. + +..|.++|+.+++.+..+..-. ...-+..+.+..+ +-+.||......+.+ ++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 2345789999999999776 3 6899999999999988876422 2222223222222 223445544433322 2211
Q ss_pred -EE---EccCCCCe-EEEEEcC-CCCEEEEEECCCeEEEEECCC-----CeeEEEeec-------CCCCeEEEEEeCCCC
Q 005123 306 -CS---FHGHKNMV-LCVKWNQ-NGNWVLTASKDQIIKLYDIRA-----MKELESFRG-------HRKDVTALAWHPFHE 367 (713)
Q Consensus 306 -~~---~~~h~~~I-~si~fsp-dg~~Latgs~Dg~I~IwDl~t-----~~~l~~~~~-------h~~~V~sl~fsp~~~ 367 (713)
.. +...+..+ ..-.|++ +|+++++..+ |+|.+.|+.. .+.+..+.. ....+.-++++++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 1114455 8888877776 9999999643 222322211 112344599999555
Q ss_pred CEEEEEE---------CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEEE---eCCcEEEEecCCCCCc
Q 005123 368 EYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS---NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 368 ~~lasgs---------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS---~Dg~v~iWd~~~~~~~ 431 (713)
++++... ..+.|.++|..+.+....+.. ...++.|++++|+. +|.. .++.|.|+|....+..
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 5554331 124799999988877666665 45799999999998 5543 5788999997555443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-10 Score=122.99 Aligned_cols=277 Identities=18% Similarity=0.333 Sum_probs=194.5
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-----------CCCcEEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-----------DGGAIKYWQ 214 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-----------~DG~I~vwd 214 (713)
.=+-+.|||.|.+|+|-..-| |.+|-.++...++.+. .-.|.-+.|||+.+||++-+ ....|+|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 456789999999999998877 8999988776666654 34688999999999999854 225799999
Q ss_pred cCCCceeeeeccCCC--C-eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 215 NNMNNVKANKSAHKE--S-VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 215 l~~~~~~~~~~~~~~--~-V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
+.+|.+.+.+....+ . -.-+.||.|++++|.-..| +|.||+..+...+..-...-..|....|+|.+++||.=+..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 999998887765322 2 2356899999999887764 79999987644433323344678999999999888865432
Q ss_pred -----CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-------C---CeEEEEECCCCeeEEEeecCCCC
Q 005123 292 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-------D---QIIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 292 -----g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-------D---g~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
..+.|-.+-+++.+++.+.++-.-..+.|-.+|.+|++--. . ..+.|+.++....-...-.-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 34778888888888777666655566788889999886321 1 13556666544332222234567
Q ss_pred eEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCCceEEE-ecccCCCeEEEEEcCCCcEEE-----EeCCcEEEEecCC
Q 005123 357 VTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLC-----SNDHTTKFWCRNR 427 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~la-----S~Dg~v~iWd~~~ 427 (713)
|...+|-| .++.+++.+. ..+|.+|.+++......+ ........+.|.|+|.|.+++ |..|.+.++|.+.
T Consensus 448 vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 448 VIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 89999999 5555554433 346889988743222221 112235678899999997664 2689999999875
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-09 Score=131.10 Aligned_cols=284 Identities=13% Similarity=0.198 Sum_probs=195.1
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEE----eCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iw----d~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~- 216 (713)
...+.|.++.|-.|...|+++..+|.|.++ |..+.. +.....-+..|.+++||||+..|+..+.+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544433 33344457899999999999999999988888775311
Q ss_pred ---------C-------------Cceeeeecc------------------------CCCCeeEEEEecCCCEEEEEEC--
Q 005123 217 ---------M-------------NNVKANKSA------------------------HKESVRDLSFCRTDLKFCSCSD-- 248 (713)
Q Consensus 217 ---------~-------------~~~~~~~~~------------------------~~~~V~~l~fs~dg~~Las~s~-- 248 (713)
. |+....+.+ ....-..|+|-.||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 000000000 2234567889999999998875
Q ss_pred ----CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEc----cCCCCeEE
Q 005123 249 ----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSFH----GHKNMVLC 317 (713)
Q Consensus 249 ----Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~~~~~~~----~h~~~I~s 317 (713)
-+.||||+-+ ++...+...-.+--.+++|-|.|++||+.-. .-.|.+|. ++|-....|. .....|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 2579999954 5544443333344568899999999998765 34477776 4454444443 34567999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCe--eEEEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEc----CCC---
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV----GHE--- 387 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~--~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~----~~~--- 387 (713)
+.|+.|+..||+...|. |.+|-..+.. ...++... ...+..+.|++.+...|...+.+|.+.++++ ...
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 9999988754 23344322 2345569999977778888888777765544 211
Q ss_pred ----CceEEEec-----------------------ccCCCeEEEEEcCCCcEE--EEeCCcEEEEecCCCC
Q 005123 388 ----TPQVEIHN-----------------------VHDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 388 ----~~~~~~~~-----------------------~h~~~V~~l~~spdg~~l--aS~Dg~v~iWd~~~~~ 429 (713)
...+.+.. .-...|.+++|++++..+ ...|+.|.+|..+...
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 01111111 124679999999998433 4599999999976544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=115.56 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=169.2
Q ss_pred CCCceEEEEEcc---CCC-EEEEEECCCcEEEEeCCCCceEEEEeccC------CCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 143 NRCSINRVLWTP---TGR-RLITGSQSGEFTLWNGQSFNFEMILQAHD------HAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 143 H~~~V~~v~~sp---dg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~------~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..+.+..+.|.- +|. .|+-+..+|.|.+|..........+.+-+ ....++.|+..+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 344566666653 444 56677788999999766544433333221 12457889998999999999999997
Q ss_pred EEcCCCceee--eeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCC-CeeEEE-EccCCCceEEEEEcC-CCCEEE
Q 005123 213 WQNNMNNVKA--NKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR-CQEERS-LTGHGWDVKSVDWHP-TKSLLV 286 (713)
Q Consensus 213 wdl~~~~~~~--~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~-~~~~~~-l~~h~~~V~sl~~sp-dg~~L~ 286 (713)
-+.....+.. +.+.|.-.++..+|+... +.+++|++|+.+..||++. ++.+.. .+.|...|.+|.-++ ...+|+
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 6666555444 778899999999998644 6789999999999999983 333332 456888999999887 577999
Q ss_pred EEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC--e---eEEEeecCCCCeEE
Q 005123 287 SGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--K---ELESFRGHRKDVTA 359 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~--~---~l~~~~~h~~~V~s 359 (713)
+|+.|-.|++||.|+ ++.+..-. ..+.|+.++++|.- ..|+.++.-+-.+|.+.... + .+..++.|.+-+..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG 306 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYG 306 (339)
T ss_pred EeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeec
Confidence 999999999999996 55555443 45789999999842 23334444444777776543 2 34555677777777
Q ss_pred EEEeCCCCCEEEEEEC-CCcEE-EEEcCC
Q 005123 360 LAWHPFHEEYFVSGSL-DGSIF-HWLVGH 386 (713)
Q Consensus 360 l~fsp~~~~~lasgs~-DG~I~-Iwd~~~ 386 (713)
-.|.. ...+|+|++. |+.|+ +|-.-+
T Consensus 307 ~DWd~-~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 307 GDWDS-KDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccccc-ccceeeeeeccccceeeeeeecc
Confidence 77855 4567888663 55544 665433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=147.14 Aligned_cols=203 Identities=19% Similarity=0.332 Sum_probs=166.8
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
....++.+-..|.++.=+|..-+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.
T Consensus 2200 ~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2200 ASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 344566777889999999999999999999999999988877776664 3358899999999999999999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEE---CCCeEEEEEcCCCe-eEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+. .+.....+.|+....++.|.. ..+++++ +++.+.+||..... .-..-+.|...++++++.|...+|++|++
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 87 555566678899999999865 5666653 57899999974321 11222789999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
+|.|++||++..+.++.+.. +. ...+|++++..|.|+||++.....++++.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999998887776663 44 56789999999999999999877666664
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-10 Score=118.57 Aligned_cols=276 Identities=14% Similarity=0.260 Sum_probs=193.1
Q ss_pred ceEEEEEccCCCEEEEEEC-----------CCcEEEEeCCCCceEEEEeccC--CCE-EEEEEccCCCEEEEEeCCCcEE
Q 005123 146 SINRVLWTPTGRRLITGSQ-----------SGEFTLWNGQSFNFEMILQAHD--HAI-RSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~-----------dg~V~Iwd~~t~~~~~~l~~h~--~~V-~sl~~spdg~~L~sgs~DG~I~ 211 (713)
.|.-+.|||+.++|+|-+. ...|+|||+.+|.+.+.+.... ..+ --+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4889999999999998753 2569999999999888877632 223 24689999999986655 6799
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
||+..+..++......-..|..+.|+|.++.||.-+.. .++.+-.+-+.+.+++.+.+.-.-..+.|-.+|++|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 99887766555545556789999999999988865432 3577778877777777665554555677777888877
Q ss_pred EEe----------CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC-C---eeEEE
Q 005123 287 SGG----------KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRA-M---KELES 349 (713)
Q Consensus 287 sgs----------~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t-~---~~l~~ 349 (713)
+-- .-.++.|+.++..............|...+|-|.|+.+++-+. ..++.+|.+++ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 532 1234667777665443333335677899999999988886543 34788888873 2 22333
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEE---CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--------eCC
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--------NDH 418 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs---~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--------~Dg 418 (713)
+. ....+.+.|+| .+++++.+. ..|.+.++|+........-...| ...+.+.|+|.|+++++ .|.
T Consensus 490 ~d--k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 490 LD--KKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred hc--ccccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 33 25578899999 777776654 46889999986522222222222 45678999999988853 567
Q ss_pred cEEEEecC
Q 005123 419 TTKFWCRN 426 (713)
Q Consensus 419 ~v~iWd~~ 426 (713)
-.+||++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 77888763
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=118.67 Aligned_cols=251 Identities=15% Similarity=0.282 Sum_probs=189.6
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeee-ccCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~~~~~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
.+...+++|.+.|++...-+...-+++.+.|.+++||--. .++....+ ......++++.+..+...|+++-++|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 3456778888999998888888999999999999999533 34333322 234568899999999999999999999998
Q ss_pred EEcC----CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE
Q 005123 255 WDFA----RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 255 wDl~----~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latg 330 (713)
+.+. +....+....|...|..+.|+-...++++.+.|..+.---.+++..+..+. .....+++.+.-. +.++|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEec
Confidence 8663 444556667799999999999989999999999877655555555443222 1111122222111 55666
Q ss_pred ECCCeEEEEEC--CCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 331 SKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 331 s~Dg~I~IwDl--~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
...|.|.+..+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+.-.........+|.+.|..+....
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 66776666554 34567888999999999999999 8899999999999999999877777778888999999988877
Q ss_pred CCcEEE--EeCCcEEEEecCCCCCc
Q 005123 409 IGYLLC--SNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 409 dg~~la--S~Dg~v~iWd~~~~~~~ 431 (713)
.-..+. ..|+.|.+|+.+.....
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeec
Confidence 665553 49999999999866543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=124.58 Aligned_cols=247 Identities=13% Similarity=0.222 Sum_probs=179.5
Q ss_pred eeEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--eccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 133 ~~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
......+|.+|+.+|..+.|+.+...|-|...+|.|.||-+-++...... ...++.|.+++|..||..|+..-.||.|
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 34456889999999999999999999999999999999987776543322 3346779999999999999999999999
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-------eeEEE----EccCCCceEEEEEc
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-------QEERS----LTGHGWDVKSVDWH 279 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-------~~~~~----l~~h~~~V~sl~~s 279 (713)
.|=.++.+++... .....-...+.|++|.+.++.+-.+|.+.++|.... .+... +......|..+.|.
T Consensus 140 IVGsvdGNRIwgK-eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGK-ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEEeeccceecch-hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 9988776554322 222334457889999999888888999999997432 11111 12223347777775
Q ss_pred --------CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---------eEEEEECC
Q 005123 280 --------PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------IIKLYDIR 342 (713)
Q Consensus 280 --------pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---------~I~IwDl~ 342 (713)
||.-.|+++..+|.+.|-.-.+......+. ..-.|..+.|+++|..|++++.|. .|.+|.-
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp- 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP- 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-
Confidence 366789999999999887655544333333 336789999999999999987543 4555554
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
-|+.+.+++.....|++++|-. .+-.++. ..|+.|++=++
T Consensus 297 ~G~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanI 336 (1189)
T KOG2041|consen 297 YGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANI 336 (1189)
T ss_pred chhheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEee
Confidence 3788888998899999999965 3333333 33555555444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-08 Score=104.15 Aligned_cols=267 Identities=12% Similarity=0.147 Sum_probs=181.7
Q ss_pred CCcEEEEeCCCCc--e-EEEEeccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCC--Cceee--eeccCCCCeeEE
Q 005123 165 SGEFTLWNGQSFN--F-EMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNM--NNVKA--NKSAHKESVRDL 234 (713)
Q Consensus 165 dg~V~Iwd~~t~~--~-~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G~I~vwdl~~--~~~~~--~~~~~~~~V~~l 234 (713)
+.-|++|++.+.. + ...+-.+.+.++-|+|+++.++|+++..+ |.|..|.++. +++.. ........-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987422 1 12233457788999999999999988654 7788877765 43322 222233444889
Q ss_pred EEecCCCEEEEEEC-CCeEEEEEcCC-CeeEE--EEccCCCc----------eEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005123 235 SFCRTDLKFCSCSD-DTTVKVWDFAR-CQEER--SLTGHGWD----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 299 (713)
Q Consensus 235 ~fs~dg~~Las~s~-Dg~I~iwDl~~-~~~~~--~l~~h~~~----------V~sl~~spdg~~L~sgs~-Dg~I~IwDl 299 (713)
++++++++++++.. .|.|.++-+.. +.... .+..|.+. +.+..++|++++|++.+. --+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888765 57899998855 32211 12234444 888999999999988864 235999999
Q ss_pred CCCceEEEEc---cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eeEEEeec---------CCCCeEEEEEeCC
Q 005123 300 KSGRELCSFH---GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM-KELESFRG---------HRKDVTALAWHPF 365 (713)
Q Consensus 300 ~t~~~~~~~~---~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~-~~l~~~~~---------h~~~V~sl~fsp~ 365 (713)
..++...... .....-..|.|+|++++.++.+ -+++|.+|+.+.. ..+..+.. -..+..+|..++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 9776533211 2345678899999999988665 5889999998863 22333221 124577888999
Q ss_pred CCCEEEEEEC-CCcEEEEEcCCCCceEEEec---ccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCCCcc
Q 005123 366 HEEYFVSGSL-DGSIFHWLVGHETPQVEIHN---VHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 366 ~~~~lasgs~-DG~I~Iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~~~~ 432 (713)
++++|.++.. ...|.+|.+......+.+.. .+...-.++.+++++.+|. + .+..|.+|.++.....+
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 7787776654 34788998876655444432 2334467899999997664 3 67779999987665544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-08 Score=109.41 Aligned_cols=236 Identities=8% Similarity=0.025 Sum_probs=153.5
Q ss_pred EccCCCEEEEEEC----------CCcEEEEeCCCCceEEEEeccCC-------CEEEEEEccCCCEEEEEe-C-CCcEEE
Q 005123 152 WTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD-D-GGAIKY 212 (713)
Q Consensus 152 ~spdg~~Latgs~----------dg~V~Iwd~~t~~~~~~l~~h~~-------~V~sl~~spdg~~L~sgs-~-DG~I~v 212 (713)
+|+|++.|+++.. +..|.|||..+.+.+..+..-.+ ....+++++||++|++.. . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999887765 78899999999999988875322 334789999999999776 3 689999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-Cee-EE---EEccCCCceE-EEEEcC-CCCEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQE-ER---SLTGHGWDVK-SVDWHP-TKSLL 285 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~~-~~---~l~~h~~~V~-sl~~sp-dg~~L 285 (713)
+|+.+++.+..+..-. ...-+..+ +...+ +-+.||......+.+ ++. .. .+......+. .-.|.+ +++++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999888775422 22222222 22222 223344444433322 111 11 1111000000 003344 78777
Q ss_pred EEEeCCCcEEEEECCCCc-----eEEEEcc-------CCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCC
Q 005123 286 VSGGKDSLVKLWDAKSGR-----ELCSFHG-------HKNMVLCVKWNQNGNWVLTAS----------KDQIIKLYDIRA 343 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~-----~~~~~~~-------h~~~I~si~fspdg~~Latgs----------~Dg~I~IwDl~t 343 (713)
++..+ |+|.+.|+...+ .+..+.. ....+.-++++++++.+++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 999999965432 2222211 122334499999999888853 124799999999
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCC-EEEEEE-CCCcEEEEEcCCCCceEEE
Q 005123 344 MKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs-~DG~I~Iwd~~~~~~~~~~ 393 (713)
++.+..+.. ...+..+++++ +++ +|++.+ .++.|.|+|+.+.+.+..+
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988874 56789999999 455 666555 6788999999887755554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=131.77 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=154.6
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCe
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~ 251 (713)
+..+.+|...|+.++-..+.+.+++++.|++|++|.++.. .+..++..|+..|.++.|..+.++++++ |+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 3457789999999988878899999999999999987642 3667788999999999999988887766 788
Q ss_pred EEEEEcCCCeeEEEEc--cCCCceEEEEEcC--CCCEEE-EEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEc
Q 005123 252 VKVWDFARCQEERSLT--GHGWDVKSVDWHP--TKSLLV-SGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWN 321 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~--~h~~~V~sl~~sp--dg~~L~-sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fs 321 (713)
|.+||--.+..+..+. ...+.+..|...+ +..+++ .++...+|+++|.++++.+..++ +.+..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999976555443221 1122333333333 233344 44778999999999988776664 334668999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE-EEcCCC
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH-WLVGHE 387 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I-wd~~~~ 387 (713)
+.|++++++-.+|+|.+.|.++|+.+..++.-......++- | .+..|+....|.++.| |..-++
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p-sdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999999999999999888766655555553 3 4567777778888888 865433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-08 Score=103.55 Aligned_cols=265 Identities=9% Similarity=0.129 Sum_probs=177.9
Q ss_pred CCCCceEEEEEccCCCEEEEEECC---CcEEEEeCCC--CceEEE--EeccCCCEEEEEEccCCCEEEEEeC-CCcEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQS--FNFEMI--LQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW 213 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t--~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vw 213 (713)
.+.+.++-|+|++++++|.++-.+ |.|..|.++. +++... .......-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455678889999999999988654 6676666553 443322 2222334478999999999998865 4889999
Q ss_pred EcCC-Cceee--eeccCCCC----------eeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEE---ccCCCceEEE
Q 005123 214 QNNM-NNVKA--NKSAHKES----------VRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL---TGHGWDVKSV 276 (713)
Q Consensus 214 dl~~-~~~~~--~~~~~~~~----------V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l---~~h~~~V~sl 276 (713)
-+.. +.+.. .+..|.+. +....+.|++++|++++. ..+|.+|++..++....- ......-+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 32211 12234433 788899999999998865 247999999876543221 1345668899
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCC-ceEEEEc---------cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-
Q 005123 277 DWHPTKSLLVSGGK-DSLVKLWDAKSG-RELCSFH---------GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA- 343 (713)
Q Consensus 277 ~~spdg~~L~sgs~-Dg~I~IwDl~t~-~~~~~~~---------~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t- 343 (713)
.|+|++++..+.++ +++|.+|+.+.. ..+..+. ....+...|.+++||++|+++.. ...|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998777665 889999988763 2222222 12456788999999999998763 34688887764
Q ss_pred -Cee--EEEeecCCCCeEEEEEeCCCCCEEEEEECC-CcEEEEEcCCCCceEEEec--ccCCCeEEEEEc
Q 005123 344 -MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWH 407 (713)
Q Consensus 344 -~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~s 407 (713)
++. +.....+...-+.+.|++ ++++|+++..| ..|.+|.++.....+.... .......||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 322 222233444578899999 67777766654 4699999876665555443 233455566664
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=128.10 Aligned_cols=280 Identities=14% Similarity=0.173 Sum_probs=189.7
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
...+.+|..+|+.++--.+.+.+++++.|.+|++|.++. ..+..+++.|+..|.++.|..+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456889999999999888888999999999999998653 33567788999999999999888887665 688
Q ss_pred EEEEEcCCCceeeeec--cCCCCeeEEEEecC--CCE-EEEEECCCeEEEEEcCCCeeEEEEc-----cCCCceEEEEEc
Q 005123 210 IKYWQNNMNNVKANKS--AHKESVRDLSFCRT--DLK-FCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWH 279 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~--~~~~~V~~l~fs~d--g~~-Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~s 279 (713)
|.+||---++.+.... ...+.+..+...++ ... ++.|+...+|+++|.+.++-...++ +....+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999976665544221 12233333433332 233 4445778999999999887665554 234568999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE-EECCCCeeEEEeecCCCCeE
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL-YDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I-wDl~t~~~l~~~~~h~~~V~ 358 (713)
+.|++++++-.+|+|.+.|.++|+.+..+.........++ .|....|+....|.++.| |...++......+.......
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 9999999999999999999999999887765554444444 245567777778888888 87766655444443222222
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---EEE--ecccCCCeEEEEEcCCC-cEEEE-eCCcEEE
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEI--HNVHDNTVWDLAWHPIG-YLLCS-NDHTTKF 422 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---~~~--~~~h~~~V~~l~~spdg-~~laS-~Dg~v~i 422 (713)
.+. .-+--|+++.....+.||.-...... +.. .....+..++++..|-+ .++++ ..|.|++
T Consensus 965 flq---svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 FLQ---SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhh---ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 221 12445666666667777743211100 111 11234567777777654 44444 6666665
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=108.19 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=136.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeccCCCCeeE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-AIKYWQNNMNNVKANKSAHKESVRD 233 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG-~I~vwdl~~~~~~~~~~~~~~~V~~ 233 (713)
+|++++..+. |...|.+...+-.+. .+|...|.-..+.-+++-++.|..|| .|-|+|.++++.... ...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence 5777777774 456666654433322 34677799889988999999999999 899999998886654 456788999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceEEEEc
Q 005123 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFH 309 (713)
Q Consensus 234 l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~~~~~~~ 309 (713)
+..+++|++++++.....|.+.|++++.....-+...+-|+.++|++++++||.+--+| .|++||+.+++......
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999999999999999999999877666666778899999999999999987665 58999999877655443
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 005123 310 GHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs 331 (713)
..+.-.+-+|.+|+++|..-+
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCCCCcEEEEEe
Confidence 445556778999999987654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=9e-09 Score=125.99 Aligned_cols=239 Identities=14% Similarity=0.150 Sum_probs=161.0
Q ss_pred EEEEEccC-CCEEEEEECCCcEEEEeCCCCceEEEEec-c-------------CCCEEEEEEccCCCEEEEEeC-CCcEE
Q 005123 148 NRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQA-H-------------DHAIRSMVWSHNDNWMVSGDD-GGAIK 211 (713)
Q Consensus 148 ~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h-------------~~~V~sl~~spdg~~L~sgs~-DG~I~ 211 (713)
..++++.+ ++++++-+.++.|++||... +.+..+.. . -..-..|++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 55566666788899999764 44433332 1 113478899988887776654 46799
Q ss_pred EEEcCCCceeeeecc---------C-------CCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccC-----
Q 005123 212 YWQNNMNNVKANKSA---------H-------KESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGH----- 269 (713)
Q Consensus 212 vwdl~~~~~~~~~~~---------~-------~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h----- 269 (713)
++|+.++.+...... . -..-.+++|++ ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 999877654322110 0 11235799998 4556667777899999998776543 22111
Q ss_pred ----------CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEcc-------------C--------CCCeEE
Q 005123 270 ----------GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG-------------H--------KNMVLC 317 (713)
Q Consensus 270 ----------~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~-------------h--------~~~I~s 317 (713)
......|+|+++++.| ++-+.++.|++||++++.......+ . ......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1235679999998854 4555678999999987653221100 0 112458
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-------------cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-------------~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++|+++|+++++-+.++.|++||..++....... ..-.....|++++ +++++++-+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 8999999988888899999999998776543321 1112567899998 6788899899999999999
Q ss_pred CCCCc
Q 005123 385 GHETP 389 (713)
Q Consensus 385 ~~~~~ 389 (713)
++...
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 77653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-11 Score=129.27 Aligned_cols=283 Identities=20% Similarity=0.350 Sum_probs=195.8
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCC--
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM-- 217 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg--~~L~sgs~DG~I~vwdl~~-- 217 (713)
...+.++.++|.|+-+|+++.-| ++|.|+..--.......| .-.|-.+.|++.. .+-++....-.-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788999999999999999877 666676543222222222 2346677887754 4555555556677888753
Q ss_pred -CceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 -NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 -~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
..+...+.+|...|+++.|.+.. ..+++++.|-.|..||+++-.. +..+..-......|+|+-..-.+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 34556678899999999999865 5789999999999999987543 44444455677889998755556666667889
Q ss_pred EEEECCCCc-eEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeE-EEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGR-ELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~-~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l-~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
++||++.+. .+..+++|...|+.++|+. ....+.+++.|++|++||....... ......+..|..-.+.|.++.+++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999998754 6778888999999999976 3456888999999999998754322 112223445666666664443333
Q ss_pred EEE----------CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC----------cEE--EEeCCcEEEEecCC
Q 005123 372 SGS----------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG----------YLL--CSNDHTTKFWCRNR 427 (713)
Q Consensus 372 sgs----------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg----------~~l--aS~Dg~v~iWd~~~ 427 (713)
--. .+.....|++.+....+..+.+|++.|..+.|-..+ ..| -|.|.++|+|-++.
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 211 222334466656666777888999999888875422 233 35999999998754
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=120.99 Aligned_cols=241 Identities=15% Similarity=0.172 Sum_probs=184.4
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC------------CEEEEEeCCCcEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND------------NWMVSGDDGGAIKY 212 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg------------~~L~sgs~DG~I~v 212 (713)
..-.+++|++.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|.|.|.. -+|++++..|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346788999888 6777665 479999999999999999999999999998731 25778888899999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEec---CC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVS 287 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~---dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~s 287 (713)
||......+..+..+.+.|.+++|-+ +. ..|++-....+|.+|+..+|+...+.........|+.++| |.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 99999999888999999999999965 23 4567777788999999999999888876667778899999 6677777
Q ss_pred EeCCCcEEEEECCC-------CceEEEEccCCC------------C-------------eEEEEEcCCCCEEEEEECCCe
Q 005123 288 GGKDSLVKLWDAKS-------GRELCSFHGHKN------------M-------------VLCVKWNQNGNWVLTASKDQI 335 (713)
Q Consensus 288 gs~Dg~I~IwDl~t-------~~~~~~~~~h~~------------~-------------I~si~fspdg~~Latgs~Dg~ 335 (713)
-+..|.|.+.+.-. ++.......|.. . ...++|+|.-+.++.....+.
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77778877776532 233332222211 0 122467886666666667788
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcCCC
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+.|+|++-..++..+....+.+..+.|-|+ ..+.|++.-.||.+.||-.+..
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 999999988888877766776777777774 3457889999999999987553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=114.13 Aligned_cols=239 Identities=20% Similarity=0.363 Sum_probs=165.8
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEccCC--CEEEE
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 203 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~------------~~V~sl~~spdg--~~L~s 203 (713)
..+.|++|.|...|.+|++|...|.|.+|.-+... ....+++|+ ..|..|.|..++ +.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999754422 223345543 457888998765 46777
Q ss_pred EeCCCcEEEEEcCCCceee-------------------------------------------eeccCCCCeeEEEEecCC
Q 005123 204 GDDGGAIKYWQNNMNNVKA-------------------------------------------NKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~-------------------------------------------~~~~~~~~V~~l~fs~dg 240 (713)
.+.|.+|++|.+....+.. .-..|...|++++|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999865431100 003455668889999888
Q ss_pred CEEEEEECCCeEEEEEcCCCe---eEEEEccC-----CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce------E
Q 005123 241 LKFCSCSDDTTVKVWDFARCQ---EERSLTGH-----GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRE------L 305 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~---~~~~l~~h-----~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~------~ 305 (713)
..++++ +|-.|.+|+++... .+..++.| ..-|++..|+|. .+.+...+..|.|++-|+|.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877776 46689999986432 23333333 245889999994 45777788889999999984321 1
Q ss_pred E----------EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCC------------CCe---EE
Q 005123 306 C----------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHR------------KDV---TA 359 (713)
Q Consensus 306 ~----------~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~------------~~V---~s 359 (713)
. -+.+....|..+.|+++|++|++-+. -+|+|||++..+ ++.++.-|. ..| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 0 11223456888999999999887653 579999998643 556654442 122 35
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+.||- +...+++|+.....-|+-+
T Consensus 343 isfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecC-Ccccccccccccceeeecc
Confidence 67887 6778888988888888764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-09 Score=116.92 Aligned_cols=288 Identities=13% Similarity=0.163 Sum_probs=192.7
Q ss_pred EeeCCCCCceEEEEEccCC------------CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC---C-CEE
Q 005123 138 TSLNKNRCSINRVLWTPTG------------RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---D-NWM 201 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg------------~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd---g-~~L 201 (713)
.++..|...|+.|.|.|.. -+||++...|.|.|||......+..+..|.+.|..++|-+. . ..|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 3567789999999998732 25677778899999999999888899999999999999663 3 456
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEc-----------------------
Q 005123 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDF----------------------- 257 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl----------------------- 257 (713)
++-....+|.+|+..+|+...+.........|+.+.| |.+.++.-+..|.|.+-+.
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 6667778999999999988877766666666677666 3344444444444444332
Q ss_pred ---------------------------------------------------CCCeeEEEEccCCCceEEEEEcCCC--CE
Q 005123 258 ---------------------------------------------------ARCQEERSLTGHGWDVKSVDWHPTK--SL 284 (713)
Q Consensus 258 ---------------------------------------------------~~~~~~~~l~~h~~~V~sl~~spdg--~~ 284 (713)
+-..++..+.-..+.+.-+.|-|+. ..
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 1111111111122334445565644 47
Q ss_pred EEEEeCCCcEEEEECCC----------------Cce---EEEEcc-----------------------------------
Q 005123 285 LVSGGKDSLVKLWDAKS----------------GRE---LCSFHG----------------------------------- 310 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t----------------~~~---~~~~~~----------------------------------- 310 (713)
|++...||.+.||-.+. ++. ++..+.
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 88888999999986543 111 110000
Q ss_pred CCC----------------------CeEEEEEcCCC---------------------------------CEEEEEECCCe
Q 005123 311 HKN----------------------MVLCVKWNQNG---------------------------------NWVLTASKDQI 335 (713)
Q Consensus 311 h~~----------------------~I~si~fspdg---------------------------------~~Latgs~Dg~ 335 (713)
|.. ...-+.+|.|| .++|+|+..|+
T Consensus 369 ~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 369 HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred CcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 000 00001112222 24778999999
Q ss_pred EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC----------CCcEEEEEcCCCCceEE--EecccCCCeEE
Q 005123 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVE--IHNVHDNTVWD 403 (713)
Q Consensus 336 I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~----------DG~I~Iwd~~~~~~~~~--~~~~h~~~V~~ 403 (713)
|.++|+.++..-..|..|...|.++.|-- ...|++.+. -+.+.|-|++++..... .....+.+|..
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999999999999999999999974 444554433 23577788887754322 23345678999
Q ss_pred EEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 404 LAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 404 l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
|..+..+.+++- .|..+.+||+..
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhcc
Confidence 999999988875 999999999843
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-09 Score=105.14 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=156.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceE-EEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFE-MILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVR 232 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~-~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~ 232 (713)
...+||.|+..|.+.+|...+.+.. .....|...|+-+.-.-| ...+..++.|.++++.+++.+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3458999999999999998865543 333445544433221112 23466778888888888776554433322224488
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCee--EE-EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--
Q 005123 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQE--ER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-- 307 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~--~~-~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~-- 307 (713)
++++++|++++++.++...|..|.+.+... ++ ......+.-.+.+|+.....+|+++.||++.|||++.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 999999999999999999999999865322 22 2233445567889999999999999999999999997543322
Q ss_pred ---EccCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeeEEEeec-------CCC-CeEEEEEeCCCCCEEEEEE
Q 005123 308 ---FHGHKNMVLCVKWNQNG--NWVLTASKDQIIKLYDIRAMKELESFRG-------HRK-DVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 308 ---~~~h~~~I~si~fspdg--~~Latgs~Dg~I~IwDl~t~~~l~~~~~-------h~~-~V~sl~fsp~~~~~lasgs 374 (713)
-..|++.+..+.|++-| .+|+..-.-+.+.|.|+++++....+.. |.. .|....|+. ++.-+.+.+
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~ 321 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKN 321 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC-CCccccccc
Confidence 23488999999999754 4566666667899999999876654432 222 377777776 344444444
Q ss_pred CCCcEEEEEcCC
Q 005123 375 LDGSIFHWLVGH 386 (713)
Q Consensus 375 ~DG~I~Iwd~~~ 386 (713)
++ .+.-|++.+
T Consensus 322 e~-~~ae~ni~s 332 (344)
T KOG4532|consen 322 EL-QGAEYNILS 332 (344)
T ss_pred ch-hhheeeccc
Confidence 33 455565543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-09 Score=115.59 Aligned_cols=250 Identities=17% Similarity=0.253 Sum_probs=168.7
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC--CEEEE-----EeCCCcEEEEEcCCCce
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVS-----GDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg--~~L~s-----gs~DG~I~vwdl~~~~~ 220 (713)
++..|+.|..+.|- -..+.|.+|++.+.+.+ .-..|...|+.+.+|+.. ..+|+ .+.-+.|+||.......
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 58889988764442 23457999998875433 234468889999999874 33443 34457899998763221
Q ss_pred ---eeeeccCCCCeeEEEEecCCCE-EEE--EECC---------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 221 ---KANKSAHKESVRDLSFCRTDLK-FCS--CSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 221 ---~~~~~~~~~~V~~l~fs~dg~~-Las--~s~D---------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
+....-....-..+.|+.-+.- |+. ...| .++++.++...++...+. ..+.|.++.|+++++-+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence 1111122333445677766643 222 2223 368888887444444443 57899999999999765
Q ss_pred EE--EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 286 VS--GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 286 ~s--gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
++ |-.-.++.|||++ ++.+..+ -.+.-+++-|+|.|++|+.++- .|.|-|||+.+.+++..+.... .+-+
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~ 360 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVF 360 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEE
Confidence 55 4556789999988 5666555 3566788999999999997764 4789999999988888887544 4667
Q ss_pred EEeCCCCCEEEEEEC------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 361 AWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 361 ~fsp~~~~~lasgs~------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
.|+| ++.+|+|++. |+.++||+. ++..+.... .....+.+.|-|-
T Consensus 361 eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~--f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 361 EWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM--FKSELLQVEWRPF 411 (566)
T ss_pred EEcC-CCcEEEEEeccccEEecCCeEEEEe-cCceeehhh--hhHhHhheeeeec
Confidence 8999 7888887765 788999998 343322221 1225788888754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-08 Score=120.74 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=181.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCC---------------C--------CceEEEEec---------------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ---------------S--------FNFEMILQA--------------- 184 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~---------------t--------~~~~~~l~~--------------- 184 (713)
-.+.|.|++||||+..|+..+.+++|.+.+.. . |+....|.+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 45689999999999999999999998876411 0 111111111
Q ss_pred ---------cCCCEEEEEEccCCCEEEEEeC---C---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-
Q 005123 185 ---------HDHAIRSMVWSHNDNWMVSGDD---G---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD- 248 (713)
Q Consensus 185 ---------h~~~V~sl~~spdg~~L~sgs~---D---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~- 248 (713)
.++.-..|+|--||.++|+.+. + ..|+||+-+ +.+..+-....+--.+++|.|.|++||+.-.
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 2334567899999999998764 2 578999865 5554444444444567899999999998765
Q ss_pred --CCeEEEEEcCCCeeEEEEc----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEcc-CCCCeEEEE
Q 005123 249 --DTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--CSFHG-HKNMVLCVK 319 (713)
Q Consensus 249 --Dg~I~iwDl~~~~~~~~l~----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~--~~~~~-h~~~I~si~ 319 (713)
...|.+|.- +|.....|. .....|..+.|+.|+..|++...|. |.+|-..+..-. ..+.. ....+..+.
T Consensus 278 ~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 345777763 333333332 3456899999999999999988665 999998875422 22221 233355599
Q ss_pred EcCC-CCEEEEEECCCeEEEEECC----CC--------eeEEEee-----------------------cCCCCeEEEEEe
Q 005123 320 WNQN-GNWVLTASKDQIIKLYDIR----AM--------KELESFR-----------------------GHRKDVTALAWH 363 (713)
Q Consensus 320 fspd-g~~Latgs~Dg~I~IwDl~----t~--------~~l~~~~-----------------------~h~~~V~sl~fs 363 (713)
|++. ...|.+.+.++.+.++++. .+ ..+..+. .....|.+++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 9984 4557777776766655432 11 0111111 134679999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCce--------EEE---------ecccCCCeEEEEEcCCCcEEEE--e---CCcEE
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHETPQ--------VEI---------HNVHDNTVWDLAWHPIGYLLCS--N---DHTTK 421 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~~~--------~~~---------~~~h~~~V~~l~~spdg~~laS--~---Dg~v~ 421 (713)
+ +...+++-..||.|.+|........ ..+ .......+..++|..+..+++. . ...+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9 5666899999999999985433211 001 0112345788889888865543 3 25777
Q ss_pred EEecCCC
Q 005123 422 FWCRNRP 428 (713)
Q Consensus 422 iWd~~~~ 428 (713)
++++...
T Consensus 515 ~~~~~~~ 521 (928)
T PF04762_consen 515 LVDIDDS 521 (928)
T ss_pred EEEeccC
Confidence 7777433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-09 Score=114.73 Aligned_cols=260 Identities=15% Similarity=0.057 Sum_probs=166.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe---
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V--- 231 (713)
++..|++++.+|.|+.+|.++++.+-+.........+... .+..+++++.++.|..+|.++++.+.........+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3567888889999999999999887666543322222222 24567778889999999999999887664321111
Q ss_pred --eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-------ceEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 005123 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWHP--TKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 232 --~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-------~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~ 300 (713)
.+-.. .+..++.++.++.|..+|..+++.+........ ....+..+| .+..+++++.++.+..+|.+
T Consensus 197 ~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 197 GESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11111 234577788899999999998877654431110 011111122 25567778889999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
+++.+.+... .....+.. ++..|++++.++.|..+|.++++.+....... ....+... .+..|+.++.||.|
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEE
Confidence 9988765542 11222222 46678888899999999999998876543221 12223333 24567888999999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
+++|..+++.+.+.............+..+..++++.||.|..+++
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 9999988765544432222222233444555666779999888764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-08 Score=111.80 Aligned_cols=210 Identities=5% Similarity=-0.064 Sum_probs=133.5
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCE-EEEEeC---CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~-L~sgs~---DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~ 241 (713)
..|.+-|....+ .+.+.... .+...+|++|++. ++..+. +..|.++|+.+++..... ...+.+....|++|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 355565554443 33333333 7778999999985 554433 356888899888765543 3455666788999998
Q ss_pred EEEEEE-C--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCe
Q 005123 242 KFCSCS-D--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMV 315 (713)
Q Consensus 242 ~Las~s-~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I 315 (713)
.|+... . +..|.++|+.+++. ..+..+........|+|||+.|+..+.. + .|+++|+.+++..+.... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 776543 2 34688889877754 3444344334567899999988877643 2 588889988776443321 111
Q ss_pred EEEEEcCCCCEEEEEECC---------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-CCc--EEEEE
Q 005123 316 LCVKWNQNGNWVLTASKD---------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGS--IFHWL 383 (713)
Q Consensus 316 ~si~fspdg~~Latgs~D---------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-DG~--I~Iwd 383 (713)
...|||||++|+..+.. ..|.+.|+.+++.. .+... .......|+| +++.|+..+. .+. |.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECC-CCCEEEEEEccCCcEEEEEEe
Confidence 24899999999876643 36888899877643 33322 2234688999 5665554443 333 55555
Q ss_pred cC
Q 005123 384 VG 385 (713)
Q Consensus 384 ~~ 385 (713)
++
T Consensus 399 l~ 400 (419)
T PRK04043 399 LN 400 (419)
T ss_pred cC
Confidence 53
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-08 Score=101.34 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=148.9
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc-
Q 005123 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA- 226 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~- 226 (713)
+++|.+ ++.++++-...+.|+.||..+++... +.... ...+++...+..|+++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 678998 66666666678999999998876543 33222 67777773345666666544 55559888865544433
Q ss_pred ----CCCCeeEEEEecCCCEEEEEECC--------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE-EEeCCCc
Q 005123 227 ----HKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSL 293 (713)
Q Consensus 227 ----~~~~V~~l~fs~dg~~Las~s~D--------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~Dg~ 293 (713)
.....+++++.++|++.++.... |.|..++.. ++...... .....+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34578999999999987776654 567778876 44433333 455688999999998776 4566778
Q ss_pred EEEEECCCCce-------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe-CC
Q 005123 294 VKLWDAKSGRE-------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PF 365 (713)
Q Consensus 294 I~IwDl~t~~~-------~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs-p~ 365 (713)
|..||+..... +..+....+....+++..+|+++++....+.|.++|.+ ++.+..+......+++++|. ++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 99998863221 11222223347889999999988888889999999988 88888888776789999995 42
Q ss_pred CCCEEEEE
Q 005123 366 HEEYFVSG 373 (713)
Q Consensus 366 ~~~~lasg 373 (713)
...+++|.
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 34455554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=138.77 Aligned_cols=196 Identities=19% Similarity=0.301 Sum_probs=158.1
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 005123 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
+.+-..|.++.-+|..-+.++|+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3345678888888888999999999999999988876555443 344889999999999999999999999999987 45
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs---~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~ 337 (713)
.....+.|.....++.|-. ..+++++ .++.+.+||..-. ..-..-..|...++++++.|.-.+|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 6667778888888888874 5666654 4778999997532 21122267999999999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE
Q 005123 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 338 IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
|||++..+.++.+.. ++ ...+|++++..|.|+||++........
T Consensus 2362 l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhc
Confidence 999998777777664 33 478999999999999999976644333
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=112.96 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=129.6
Q ss_pred ceEEEEEccCCCE-EEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCC--CcEEEEEcCCC
Q 005123 146 SINRVLWTPTGRR-LITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDG--GAIKYWQNNMN 218 (713)
Q Consensus 146 ~V~~v~~spdg~~-Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~D--G~I~vwdl~~~ 218 (713)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+.+..|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 6654443 569999998876655443 55667778999999877643 334 46777788777
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECC-C--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC----
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---- 291 (713)
+... +..+........|++||+.|+..++. + .|.++|+.+++..+.... ... ...|+|||+.|+..+..
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence 6544 33333334566899999988777643 2 688889887766443322 111 35899999988887654
Q ss_pred -----CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCC
Q 005123 292 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRA 343 (713)
Q Consensus 292 -----g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t 343 (713)
..|.+.|+.+++.. .+... .......|+|||+.|+..+.++ .|.++++..
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 26888899887643 33322 2344689999999888766432 466777764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-09 Score=102.12 Aligned_cols=231 Identities=11% Similarity=0.070 Sum_probs=152.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeee-ccCCCCeeEEE-EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLS-FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK 274 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~-~~~~~~V~~l~-fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~ 274 (713)
+..+|+.|+..|...+|...+++....+ ..+...|+-+. .+.....+..++.|.++++.+++-......+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4578999999999999999877644333 22333332221 111234577888999999998865443333322223488
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-ce-EE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE---
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSG-RE-LC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--- 348 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~-~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--- 348 (713)
++++++|++++++.++...|..|.+... +. ++ ........-.+.+|+.....+|+++.||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988653 22 23 223344556788999999999999999999999999754432
Q ss_pred --EeecCCCCeEEEEEeCCCC-CEEEEEECCCcEEEEEcCCCCceEEEec------ccC-CCeEEEEEcCCCcEE-EEeC
Q 005123 349 --SFRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHN------VHD-NTVWDLAWHPIGYLL-CSND 417 (713)
Q Consensus 349 --~~~~h~~~V~sl~fsp~~~-~~lasgs~DG~I~Iwd~~~~~~~~~~~~------~h~-~~V~~l~~spdg~~l-aS~D 417 (713)
+-..|.+.+..+.|++.+. ++|+..-.-+.+.+.|+++......+.. .|. ..|..-.|+.++.-+ ++..
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 2235889999999997332 3555555567899999988765443332 122 236666666655322 2333
Q ss_pred CcEEEEecCC
Q 005123 418 HTTKFWCRNR 427 (713)
Q Consensus 418 g~v~iWd~~~ 427 (713)
-.+.=|+++.
T Consensus 323 ~~~ae~ni~s 332 (344)
T KOG4532|consen 323 LQGAEYNILS 332 (344)
T ss_pred hhhheeeccc
Confidence 3444455433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-08 Score=112.61 Aligned_cols=264 Identities=7% Similarity=-0.024 Sum_probs=165.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC----------CE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----------~V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+-+|.++++.+-....... .+ ..+.. ++..+++++.+|.|..+|.++++.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55788888888999999988887655543220 00 01122 3567788888999999999999987766
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-----EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-----~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
...........+ .+..+++++.++.|..+|.++++.+..+......+ .+-.. .+..+++++.++.|..+|.
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 543322112222 24567778889999999999999887765321111 11111 2346777888999999999
Q ss_pred CCCceEEEEccCCC-------CeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 300 KSGRELCSFHGHKN-------MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 300 ~t~~~~~~~~~h~~-------~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
.+++.+.+...... ....+..+| .+..|++++.++.+..+|..+++.+...... ....+.. .+..|
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~---~~~~v 297 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV---DGGRI 297 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE---ECCEE
Confidence 99987665431110 011111122 3556777888999999999999887655421 1222332 35567
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+.++.+|.|..+|..+++..............+..+..+..++++.||.|.+.|.+..+.
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 777889999999998776543322111122233334334345556899999888765443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-08 Score=118.72 Aligned_cols=237 Identities=11% Similarity=0.089 Sum_probs=155.4
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeecc-C-------------CCCeeEEEEecCCCEEEEEEC-CCeEE
Q 005123 190 RSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA-H-------------KESVRDLSFCRTDLKFCSCSD-DTTVK 253 (713)
Q Consensus 190 ~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~~~~~~~~-~-------------~~~V~~l~fs~dg~~Las~s~-Dg~I~ 253 (713)
..++++.+ ++++++-..++.|++||..... +..+.. . -..-..|+++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788765 4556666677889999976543 332221 0 123578899988887666654 56899
Q ss_pred EEEcCCCeeEEEEccC-----------------CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEccC----
Q 005123 254 VWDFARCQEERSLTGH-----------------GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---- 311 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h-----------------~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h---- 311 (713)
++|+.++.. .++.+. ...-..|+|++ ++.++++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999877643 333210 12346799999 5556666677889999999876543 22111
Q ss_pred -----------CCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeeEEEee-------------cC--------CCCeE
Q 005123 312 -----------KNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKELESFR-------------GH--------RKDVT 358 (713)
Q Consensus 312 -----------~~~I~si~fspdg~~La-tgs~Dg~I~IwDl~t~~~l~~~~-------------~h--------~~~V~ 358 (713)
-...+.|+|++++++|+ +-+.++.|++||++++....... .. -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12346799999998555 45567899999998765321110 00 11246
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec------------ccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------------VHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~------------~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
.+++++ +++++++-+.+++|++||..+.......-. +.-.....|+++++|.++++ .+++|++||
T Consensus 808 Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 888998 678888889999999999876543211111 11235778999999977765 789999999
Q ss_pred cCCCCC
Q 005123 425 RNRPGD 430 (713)
Q Consensus 425 ~~~~~~ 430 (713)
++....
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 976543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-08 Score=101.63 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=144.1
Q ss_pred CCcEEEEeCCCCceEEEEeccC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE
Q 005123 165 SGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~--~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~ 242 (713)
+|.|..||..+++.+-...... ....+. ...+++++++++.++.|..||..+++.+..+.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6889999999999887776421 222221 223577888888999999999999998877765 22222212 224566
Q ss_pred EEEEECCCeEEEEEcCCCeeEEEE-ccCC---CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCC----
Q 005123 243 FCSCSDDTTVKVWDFARCQEERSL-TGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---- 314 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~~~~l-~~h~---~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~---- 314 (713)
+++++.++.|+.+|..+++.+... .... .........-+++.++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999998874 3221 11122222223788899988999999999999998877653322
Q ss_pred ------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 315 ------VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 315 ------I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+..-.+..++ .+++++.++.+..+|+.+++.+.... ...+..+ ... .+..|++++.++.|.+||+++++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 1122222244 77777777754444999999775333 2233332 223 56677777799999999998876
Q ss_pred ce
Q 005123 389 PQ 390 (713)
Q Consensus 389 ~~ 390 (713)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=105.82 Aligned_cols=148 Identities=10% Similarity=0.059 Sum_probs=122.5
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCC-cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSG-EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg-~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+|+..|.-..+.-+++-++.|..|| .|-|||..+++.. .+...-+.|.++..++||++++++.....|.+.|+++++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36888899999999999999999999 8999999887654 455567889999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCC----eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg----~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
....-+...+-|+.+.|++++++||-+--+| .|+++|+..++...... ....-.+-+|.+|+++|..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 8877777888999999999999999876655 69999998876654433 3344456788888887766543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-09 Score=106.44 Aligned_cols=240 Identities=15% Similarity=0.324 Sum_probs=162.4
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----eeeeeccC------------CCCeeEEEEecCC--CEEEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCSC 246 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----~~~~~~~~------------~~~V~~l~fs~dg--~~Las~ 246 (713)
...|++|.|...|.+|++|...|.|.+|.-+... ....+..| .+.|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999754332 11112222 3468889998765 457788
Q ss_pred ECCCeEEEEEcCCCee-------------------------------------E-----EEE-ccCCCceEEEEEcCCCC
Q 005123 247 SDDTTVKVWDFARCQE-------------------------------------E-----RSL-TGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 247 s~Dg~I~iwDl~~~~~-------------------------------------~-----~~l-~~h~~~V~sl~~spdg~ 283 (713)
+.|.+|++|.+..... + +.+ ..|..-|++|+|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998743210 0 001 24666788999999888
Q ss_pred EEEEEeCCCcEEEEECCCCc---eEEEEccCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCee------EE
Q 005123 284 LLVSGGKDSLVKLWDAKSGR---ELCSFHGHK-----NMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKE------LE 348 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~---~~~~~~~h~-----~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~------l~ 348 (713)
.++++. |=.|.+|++.--. .+..++.|+ .-|++..|+|. .+.+...++.|.|++.|+|.... +.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 887764 6789999886432 222333333 35889999994 56677888999999999983211 11
Q ss_pred ----------EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC------------CCe---EE
Q 005123 349 ----------SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD------------NTV---WD 403 (713)
Q Consensus 349 ----------~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~------------~~V---~~ 403 (713)
-|..-.+.|..+.|++ ++++|++-+.- +|+|||++..+..+.....|. +.| ..
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1122345688999998 88888887665 899999988877666553332 233 34
Q ss_pred EEEcCCCcEE--EEeCCcEEEEecCCC
Q 005123 404 LAWHPIGYLL--CSNDHTTKFWCRNRP 428 (713)
Q Consensus 404 l~~spdg~~l--aS~Dg~v~iWd~~~~ 428 (713)
+.|+.|...+ +|..+..-||-.+..
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred EEecCCcccccccccccceeeeccccC
Confidence 6777766433 335666666654433
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-10 Score=121.48 Aligned_cols=240 Identities=19% Similarity=0.304 Sum_probs=174.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeee-ccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCC--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANK-SAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFAR-- 259 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~-~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~-- 259 (713)
.+.+.++.++|.|+-++++++-|. .+.|++.. ....-+ ....-.|-++.|++. ..+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 567788899999999999988774 45565543 221111 112234667777764 34555555566778999843
Q ss_pred -CeeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005123 260 -CQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 260 -~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I 336 (713)
......+.+|...|+.+.|++. -..+++++.|..+..||+++-. .+..+.......+.|+|+-..-.+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3456677889999999999985 4589999999999999999854 556666666778889998855556666777889
Q ss_pred EEEECCCC-eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 337 KLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 337 ~IwDl~t~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+|||++.+ ..+..+++|...|..++|.......+.+++.|++|++||.++.....+.....+..|+.-.+.|-|.-.+.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999865 56788999999999999988677789999999999999997766554444445677888888886644332
Q ss_pred ----eCCcEEEEecC
Q 005123 416 ----NDHTTKFWCRN 426 (713)
Q Consensus 416 ----~Dg~v~iWd~~ 426 (713)
.++.+-+++.+
T Consensus 263 mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCE 277 (1081)
T ss_pred ccccCCeeeeecccc
Confidence 45555555543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-10 Score=127.58 Aligned_cols=216 Identities=16% Similarity=0.291 Sum_probs=161.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl 215 (713)
+++..|....+|++|+-+.++|++|+..|.|++|++.++.......+|.++|+.|.=+.||..+++.+.-. ...+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999887665433 4679987
Q ss_pred CC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-c---cCCCceEEEEEcCCCCEEEEEeC
Q 005123 216 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-T---GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 216 ~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~---~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
.+ +.....+ ....++.|+.....-+.|+....+.|||+.++..+.++ . +....-++..|+|+.++++ .
T Consensus 1175 ~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred ccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence 64 2233332 34457788766544455555567999999998776552 2 2223347889999888776 3
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
|| .+||++..+.++.|......+ .-.|+|+|+-++.-+ .|||+++.+.++....-+ -+.+.|+. .++++
T Consensus 1248 dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNs-tG~Vm 1316 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNS-TGDVM 1316 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEecc-Cccch
Confidence 44 489999988888877555333 346999999888865 499999988877654332 25666776 44444
Q ss_pred E
Q 005123 371 V 371 (713)
Q Consensus 371 a 371 (713)
.
T Consensus 1317 Y 1317 (1516)
T KOG1832|consen 1317 Y 1317 (1516)
T ss_pred h
Confidence 3
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-09 Score=109.44 Aligned_cols=161 Identities=17% Similarity=0.216 Sum_probs=114.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMN 218 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs---~DG~I~vwdl~~~ 218 (713)
.+..+..++++++||++..+....++++.... +..... -...-+++.|..+...+.++. +...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556677788888888888776666654432 222222 223334455555555555544 4445556655554
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
... .+-+|-+.+++++|++|+++|+++..|..|+|-.+.....+.. .-+|...|..+++.+ +..|++++.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 433 3458999999999999999999999999999988765444443 356999999999985 4568999999999999
Q ss_pred ECCCCceEEEEc
Q 005123 298 DAKSGRELCSFH 309 (713)
Q Consensus 298 Dl~t~~~~~~~~ 309 (713)
|+++++.+.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999987664
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-07 Score=95.36 Aligned_cols=215 Identities=12% Similarity=0.003 Sum_probs=139.6
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCeeEEE--EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~--fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
.+|.|..||..+++.+....... .+.... ...++.++++++.++.|..||..+++.+..+............ ++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETT
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--ccc
Confidence 36899999999998887764421 122222 3336777888899999999999999988777642221111222 356
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-ccCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC---
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSF-HGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--- 356 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~-~~h~---~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~--- 356 (713)
.+++++.|+.|+.+|.++|+.+.+. .... ..........+++.++++..++.|..+|+++++.+..+......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778899999999999998884 3221 11222233334788999999999999999999998888764422
Q ss_pred -------e-EEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecCC
Q 005123 357 -------V-TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 357 -------V-~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~~ 427 (713)
+ ..+.+. ++ .++.++.++.+..+|+.++....... ...+..+....++.+++ +.|+.|.+||++.
T Consensus 158 ~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 223332 33 67777777764444998887443222 33344433344444444 4699999999866
Q ss_pred CC
Q 005123 428 PG 429 (713)
Q Consensus 428 ~~ 429 (713)
.+
T Consensus 232 G~ 233 (238)
T PF13360_consen 232 GK 233 (238)
T ss_dssp TE
T ss_pred CC
Confidence 54
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-09 Score=108.41 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=116.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeeeccCCCCeeEEEEecCCCEEEEEECCC---eEEEEEcCCCe
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQ 261 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~---~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg---~I~iwDl~~~~ 261 (713)
.+..+..++++++||++..+..+.++++..... ..........-+++.|..+...+..+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 344556677888888888888877777655432 111122334455666666666665554444 4555554443
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
....+-+|.+-++.|+|++|+++|+++..|..|+|-....--.+..+ -+|+..|..++.-++ ..|++++.|++|++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 33445579999999999999999999999999999877655555544 469999999998754 5689999999999999
Q ss_pred CCCCeeEEEee
Q 005123 341 IRAMKELESFR 351 (713)
Q Consensus 341 l~t~~~l~~~~ 351 (713)
+++++.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999987664
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=103.53 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=120.1
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCce------------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF------------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~------------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
|+.+.++.+- .|+++..++.+..+...++.+ .+.+..|.+.-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555555433 466666666555554333222 222333333333333344567899999999999998
Q ss_pred cCCCce-eeeeccCCCCeeEEEEecCCCEEEEEE-----CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEE
Q 005123 215 NNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVS 287 (713)
Q Consensus 215 l~~~~~-~~~~~~~~~~V~~l~fs~dg~~Las~s-----~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~s 287 (713)
.+.... ...+......-.+.++...++.|.++. .-+..++|+++-.+.+..-......|.+++-+| ....+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 765211 111111111122233333444443321 123466676654433322222334599999998 4567888
Q ss_pred EeCCCcEEEEECCCCce-EEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q 005123 288 GGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~-~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t 343 (713)
|+.||.+-+||.++... +..++.|+..|+.+-|+| ++..|+++++||.+..||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 89999999999998643 334678999999999999 688999999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-07 Score=107.99 Aligned_cols=236 Identities=14% Similarity=0.228 Sum_probs=158.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc----CCC-
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN----NMN- 218 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl----~~~- 218 (713)
.+.|.++.|..+..-|+.+..+|.|.+-|.++.... ....-+..|.+++|++|+..++..+.+.+|.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 368999999999999999999999999998876543 33445788999999999999998888777766431 000
Q ss_pred ------------------ceeeeecc---------------------CCCCeeEEEEecCCCEEEEEE-----CCCeEEE
Q 005123 219 ------------------NVKANKSA---------------------HKESVRDLSFCRTDLKFCSCS-----DDTTVKV 254 (713)
Q Consensus 219 ------------------~~~~~~~~---------------------~~~~V~~l~fs~dg~~Las~s-----~Dg~I~i 254 (713)
+....+.+ ..+.=+.|+|--||.++++.. ..++|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00011110 111223589999999998842 2379999
Q ss_pred EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceEE----EEccCCCCeEEEEEcCCCCEE
Q 005123 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRELC----SFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs---~Dg~I~IwDl~t~~~~~----~~~~h~~~I~si~fspdg~~L 327 (713)
||-+ +..-..-....+--.+++|-|.|.++++-. .|+.|.+|.-+ |-... .+......|..++|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCce
Confidence 9976 332222222334456899999999888753 35679898744 33222 222233448999999999999
Q ss_pred EE---EECCCeEEEEECCCCe--eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 328 LT---ASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 328 at---gs~Dg~I~IwDl~t~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++ ......|++|-+.+.. ....+....... +.|+|.....|..-..+|.+.++|+
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 87 4455569999988743 233333333323 8899866666666667777777665
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.1e-09 Score=108.24 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=170.9
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---CceEEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNM 217 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~ 217 (713)
-|++.|+.+..+ ..+++++++.||.++.|.-.. -+.++.+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777777655 456899999999999997443 3455666788889999999999999999777 99999999987
Q ss_pred Cceeeeecc--CCCCeeEEEEecCCC-EE-EEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 218 NNVKANKSA--HKESVRDLSFCRTDL-KF-CSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 218 ~~~~~~~~~--~~~~V~~l~fs~dg~-~L-as~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
-..+.-++. ....+..+.-..|.. .| ++.-.++.|.|+|-.... ......-|...|.++.+++.++.+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 665433222 222222221111111 22 333457899999965432 333445588999999999999999999999
Q ss_pred CcEEEEECCC------CceEE---------EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec----
Q 005123 292 SLVKLWDAKS------GRELC---------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---- 352 (713)
Q Consensus 292 g~I~IwDl~t------~~~~~---------~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---- 352 (713)
|.|..|.... .+... .+...+...+++.|++++..+.+-+.|..|+++++++++.+..+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998762 11111 1223456789999999999999999999999999999876554421
Q ss_pred ----------------------------CCC-CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 353 ----------------------------HRK-DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 353 ----------------------------h~~-~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|.. .-+.+.|.. .+++|+-++-- -|+|.++.++.
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTIL-GIKVINLDTNT 308 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeecce-eEEEEEeecCe
Confidence 111 134566766 67788777655 47777776654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-07 Score=91.80 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=158.6
Q ss_pred eEEEEEcc-CCCEEEEEECCCc-EEEEeCCCCceEEEEeccCCCE--EEEEEccCCCEEEEEeC-----CCcEEEEEcC-
Q 005123 147 INRVLWTP-TGRRLITGSQSGE-FTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDD-----GGAIKYWQNN- 216 (713)
Q Consensus 147 V~~v~~sp-dg~~Latgs~dg~-V~Iwd~~t~~~~~~l~~h~~~V--~sl~~spdg~~L~sgs~-----DG~I~vwdl~- 216 (713)
...++.+| +...++.+-.-|+ +.+||..+++....+....+.- -.-+||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 4566677777665 6789999999888776544332 24689999999998743 4899999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEEC------------------CCeEEEEEcCCCeeEEE--E--ccCCCceE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------------------DTTVKVWDFARCQEERS--L--TGHGWDVK 274 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~------------------Dg~I~iwDl~~~~~~~~--l--~~h~~~V~ 274 (713)
+-..+.++..+.-.-..+.+.+|++.|+++.. +-+|.+.|..+++.+.. + ..|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 56777777777777788899999988887632 23466677788887666 3 33777899
Q ss_pred EEEEcCCCCEEEEEeCCCc-------EEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005123 275 SVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLY 339 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~-------I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs-~Dg~I~Iw 339 (713)
.+++..+|..++..-..+. |.+++.. +.+..+. .....|-+|+++.++.++++.+ .-+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999876655544332 4444433 2232222 3457899999999998887655 67789999
Q ss_pred ECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 340 DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 340 Dl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
|..+++.+..... ..+..++... ++ ++++. ..|.+
T Consensus 245 d~~tg~~~~~~~l--~D~cGva~~~-~~-f~~ss-G~G~~ 279 (305)
T PF07433_consen 245 DAATGRLLGSVPL--PDACGVAPTD-DG-FLVSS-GQGQL 279 (305)
T ss_pred ECCCCCEeecccc--CceeeeeecC-Cc-eEEeC-CCccE
Confidence 9999998876653 3456776655 33 44444 44554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-06 Score=89.53 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=138.4
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-
Q 005123 191 SMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (713)
Q Consensus 191 sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~- 268 (713)
+++|.+ ++.++++-...+.|..|+..++...... ... ...+++...+..|+++..++ +.++|..+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 678887 5556666667899999999888664422 212 77788874345666666554 56669988865544432
Q ss_pred ----CCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEE-EEECCCe
Q 005123 269 ----HGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQI 335 (713)
Q Consensus 269 ----h~~~V~sl~~spdg~~L~sgs~D--------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~La-tgs~Dg~ 335 (713)
.....+.++++++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34678899999999977766543 557777877 44433333 355678999999999776 4556788
Q ss_pred EEEEECCCCe----eEEEe---ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 336 IKLYDIRAMK----ELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 336 I~IwDl~t~~----~l~~~---~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
|..||+.... ....+ ....+..-.+++.. +++++++....+.|.++|.+ ++. +..+......+++++|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKL-LREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCE-EEEEE-SSSSEEEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccE-EEEEcCCCCCEEEEEEE
Confidence 9999985321 11222 22223478899998 78888888889999999986 443 34333335689999995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=116.97 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=143.7
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEE
Q 005123 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318 (713)
Q Consensus 239 dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si 318 (713)
+...++.|+.-..+..+|+++.+..+........|+-+..+ ++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 45667778778889999999988877766555556666654 8899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE---cCC
Q 005123 319 KWNQNGNWVLTASK---------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL---VGH 386 (713)
Q Consensus 319 ~fspdg~~Latgs~---------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd---~~~ 386 (713)
.. .|++|++++. |..|+|||+|+.+.+.-+.-+.++ .-+.|+|.-...+++++..|.+.+-| +.+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 66 6888988764 567999999998887766655554 67788887778899999999999999 433
Q ss_pred CCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
..............+..+++++++..+|- .+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 32223333334456999999999988875 889999997
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-07 Score=99.66 Aligned_cols=251 Identities=14% Similarity=0.195 Sum_probs=168.9
Q ss_pred EEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC
Q 005123 169 TLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 169 ~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
.+|+..+......+....-.+..++|||.|.+|++.... -|.+|.-.....+..+ ....|..+.|++++++|.+-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ecCCceecccCcccceeeeecc
Confidence 456655555555555567789999999999999987764 4899988777654443 3467899999999999998754
Q ss_pred C---------------CeEEEEEcCCCeeEEEEccCCCc--eE-EEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEc
Q 005123 249 D---------------TTVKVWDFARCQEERSLTGHGWD--VK-SVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFH 309 (713)
Q Consensus 249 D---------------g~I~iwDl~~~~~~~~l~~h~~~--V~-sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~ 309 (713)
. +.+.+||+.++..+..+...... .. -+.|+-+.++++-.. ...|+|+++ +... ...+.
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~ 169 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFK 169 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchh
Confidence 3 35999999999998888765544 44 678888887766553 356999997 3321 11122
Q ss_pred cC-CCCeEEEEEcCC--CCEEEE-----EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE----E---
Q 005123 310 GH-KNMVLCVKWNQN--GNWVLT-----ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG----S--- 374 (713)
Q Consensus 310 ~h-~~~I~si~fspd--g~~Lat-----gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg----s--- 374 (713)
.. ...|...+|+|. +..||+ ...++.++||.+...+.+.+-......=..+.|.. .+++|++- .
T Consensus 170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksn 248 (561)
T COG5354 170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSN 248 (561)
T ss_pred hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecc
Confidence 11 256788889885 334443 45677899999987666554443444446788888 45544321 1
Q ss_pred ----CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC--cEEEE--eCCcEEEEecCC
Q 005123 375 ----LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 375 ----~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~laS--~Dg~v~iWd~~~ 427 (713)
.+.+++|+++......+.. .-.+.|.+++|.|++ +.+++ .+-.+.++++..
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 1346888888644433333 457899999998876 33333 566677776643
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-06 Score=85.28 Aligned_cols=264 Identities=10% Similarity=0.045 Sum_probs=145.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
-|++++.|+.+|.+++.+.++++....+...+.--.......++.+|..++.|++.+..|..+...+.+.+.......+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 57789999999999999999997776665433222233445688999999999999999999988877765544444444
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEE--EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKS--VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~s--l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
++.+-...|+.+...|.|.--..+... .+.... ....|.+ ++. +..+..++-||.+.-+| .+|+.+..+.
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~- 215 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA- 215 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-
Confidence 455533445555556665555544431 111111 1122221 111 34456666777777777 5566666544
Q ss_pred CCCCeEE-EEEc-CCCCEEEEEECCC--------eEEEEECCCCeeEEEeecCCCCeEEEEEeC---CCCCEEEEEECCC
Q 005123 311 HKNMVLC-VKWN-QNGNWVLTASKDQ--------IIKLYDIRAMKELESFRGHRKDVTALAWHP---FHEEYFVSGSLDG 377 (713)
Q Consensus 311 h~~~I~s-i~fs-pdg~~Latgs~Dg--------~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp---~~~~~lasgs~DG 377 (713)
..+.|.. -+-+ |....|..+..+- .-.+|...++...+.+...+ ...+++. ...++|..++.||
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCC
Confidence 2232211 1111 2223333333322 34456666554433332111 1122221 1256788899999
Q ss_pred cEEEEEcCCCCceEEEecccCCCeEEEEEcC---------CCcEEE-EeCCcEEEEecCC
Q 005123 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHP---------IGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 378 ~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp---------dg~~la-S~Dg~v~iWd~~~ 427 (713)
++.|..++..-..+....+.-..+..+..+. +++++. ..|..|+.||++.
T Consensus 293 kv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 293 KVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred cEEEEEecccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 9998866433211111111112233332221 455554 4999999999864
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-06 Score=85.47 Aligned_cols=227 Identities=14% Similarity=0.197 Sum_probs=133.2
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHD---HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~---~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
++.+.||++||+.- |..|.|-..++. ..+......+ -.=+.++||+|+.+||.+...|+|+++|+...++...-
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56778898777665 556777654431 2223333222 23578999999999999999999999998764433211
Q ss_pred ------ccCCCCeeEEEEecCC------CEEEEEECCCeEEEEEcCC-----CeeEEEEc--c-CCCceEEEEEcCCCCE
Q 005123 225 ------SAHKESVRDLSFCRTD------LKFCSCSDDTTVKVWDFAR-----CQEERSLT--G-HGWDVKSVDWHPTKSL 284 (713)
Q Consensus 225 ------~~~~~~V~~l~fs~dg------~~Las~s~Dg~I~iwDl~~-----~~~~~~l~--~-h~~~V~sl~~spdg~~ 284 (713)
......|..+.|.... ..|++-..+|.++-|-+.. .+....+. . +...|.++.+++..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 1123567777775432 2466677788877776532 22223332 2 3568999999999898
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEE--EEEECCC------eEEEEECCCCeeEEEeecCCCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV--LTASKDQ------IIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~L--atgs~Dg------~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
|++|+.... +++. .++....+++-.+-.+.-+. ++...|+ +..+|.+-+.+...........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 888775432 0000 00111222222221111111 1111121 1233333332222222234578
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|..+..|| ++.+||+...+|.|.+|++-.-.
T Consensus 232 i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 232 IFKMSLSP-DGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEECC-CCCEEEEEEcCCeEEEEecCcch
Confidence 99999999 89999999999999999996544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.1e-07 Score=96.41 Aligned_cols=259 Identities=14% Similarity=0.223 Sum_probs=152.2
Q ss_pred ccCCCEEEEEE---------CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 153 TPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 153 spdg~~Latgs---------~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
|+|+++++... ..+.+.|||+++++....... ...+....|||+|+.|+... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777777642 346799999999765543333 67788999999999999876 57899998877754433
Q ss_pred eccC-----------------CCCeeEEEEecCCCEEEEEECC-C-----------------------------------
Q 005123 224 KSAH-----------------KESVRDLSFCRTDLKFCSCSDD-T----------------------------------- 250 (713)
Q Consensus 224 ~~~~-----------------~~~V~~l~fs~dg~~Las~s~D-g----------------------------------- 250 (713)
.... -+.-..+.||+|+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1223568899999998865332 1
Q ss_pred eEEEEEcCCCeeEE-E-E---ccCCCceEEEEEcCCCCEEEEEe--CCC---cEEEEECCCCceEEEEc-cCCCCe---E
Q 005123 251 TVKVWDFARCQEER-S-L---TGHGWDVKSVDWHPTKSLLVSGG--KDS---LVKLWDAKSGRELCSFH-GHKNMV---L 316 (713)
Q Consensus 251 ~I~iwDl~~~~~~~-~-l---~~h~~~V~sl~~spdg~~L~sgs--~Dg---~I~IwDl~t~~~~~~~~-~h~~~I---~ 316 (713)
.+.|+|+.+++... . . ......+..+.|.++++.|++.- .+. .|.++|..++++...+. ....+| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 14445555544321 1 1 12345688999999888444433 322 37777888766543332 223333 3
Q ss_pred EEEEc-CCCC-EEEEEECCCe--EEEEECCCCeeEEEeecCCCCeEE-EEEeCCCCCEEEEEECCC--cEEEEEcCCC-C
Q 005123 317 CVKWN-QNGN-WVLTASKDQI--IKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG--SIFHWLVGHE-T 388 (713)
Q Consensus 317 si~fs-pdg~-~Latgs~Dg~--I~IwDl~t~~~l~~~~~h~~~V~s-l~fsp~~~~~lasgs~DG--~I~Iwd~~~~-~ 388 (713)
.+.|. +++. +|.....||. |.++|...+. ...+....-.|+. +.|+.+++.+++++..+. .-.||.++.. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 55554 5554 4455556774 6666766555 3344444556744 677775566666776633 4455555444 4
Q ss_pred ceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 389 PQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
...+.+.........+.|++++.+++
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEE
Confidence 44555544443336999999997764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-09 Score=120.02 Aligned_cols=196 Identities=14% Similarity=0.213 Sum_probs=148.0
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--eEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKV 254 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--~I~i 254 (713)
+..+.+..|+...+|++|+-+.++|++|+..|.|++|++.+|........|...|+.+.-+.||..+++.+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999998877665543 4678
Q ss_pred EEcCC-CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-c---cCCCCeEEEEEcCCCCEEEE
Q 005123 255 WDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H---GHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 255 wDl~~-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~---~h~~~I~si~fspdg~~Lat 329 (713)
|++.+ +....++. .-.++.|+..-..-+.|+....+.|||+.++..+.++ . +....-+++.|||+.++|+
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99854 33344443 3568888876555566666677999999998876653 2 1223347789999988776
Q ss_pred EECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.|| .+||++..+.++.|......+ .-.|+| ++.-++.-+ .|||+++..
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecc-cccccC-CCceEEeec-----hhhhhHHHH
Confidence 455 589999888888887655333 345899 666666544 378887654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-07 Score=95.99 Aligned_cols=253 Identities=13% Similarity=0.106 Sum_probs=151.9
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEE
Q 005123 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCS 245 (713)
Q Consensus 168 V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las 245 (713)
|++.+..+.+....+..+...|.+++|++..+ +|..++.+..|+|.|+++...+..+..+ ..+++++|..|+ .+|++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55666556666666777888999999999887 6788999999999999999998888776 889999998876 55777
Q ss_pred EECCCeEEEEEcCCCeeE-EEEcc--CCCceEEEEEc------CCCCEEEEEeCCCcEEEEECCC----CceEEEEccCC
Q 005123 246 CSDDTTVKVWDFARCQEE-RSLTG--HGWDVKSVDWH------PTKSLLVSGGKDSLVKLWDAKS----GRELCSFHGHK 312 (713)
Q Consensus 246 ~s~Dg~I~iwDl~~~~~~-~~l~~--h~~~V~sl~~s------pdg~~L~sgs~Dg~I~IwDl~t----~~~~~~~~~h~ 312 (713)
|..+|.|.|||++..+.. ..+.+ ....|..|+.- +.+.+|+..+. .+..|++.- .-++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC-CC
Confidence 888999999999764432 22221 22344444332 23445554443 255665542 11222222 23
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------eEEE-EECCCCeeEEEee-cC-CCC------eEEEEEeCCCCCEE-EEEEC
Q 005123 313 NMVLCVKWNQNGNWVLTASKDQ-------IIKL-YDIRAMKELESFR-GH-RKD------VTALAWHPFHEEYF-VSGSL 375 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs~Dg-------~I~I-wDl~t~~~l~~~~-~h-~~~------V~sl~fsp~~~~~l-asgs~ 375 (713)
+...++.+.+..+.++.....+ .|.. -|.+++..+...+ .+ .+. -..+.-.+ +.++| .++++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~-~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVE-DNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccc-cccEEEEecCC
Confidence 3444555555445555443321 1111 1223343332221 11 110 01111223 33444 45556
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC--CcEEEE-eCCcEEEEecCC
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--GYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~laS-~Dg~v~iWd~~~ 427 (713)
.+.+.+||..+......+.. +..|.+++.... +.+|+. .|..++||..+.
T Consensus 410 tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred cceeEEeccchhheeeeccc--CcceeecceeecCCcchhhheecceEEEEecCC
Confidence 67899999987765554433 477888876543 356665 999999997654
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-07 Score=101.53 Aligned_cols=275 Identities=12% Similarity=0.124 Sum_probs=159.9
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV--- 220 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~--- 220 (713)
..|.--+++..+++|+.|++.|.|++|+-..+.....-. +..+.+..+..+.+..++|.|+..|.|.|+.++....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344555566778999999999999999987765443322 2445566677888888888999999999998775321
Q ss_pred --ee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 221 --KA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 221 --~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+. .-+.|+..|++++|+.|+..+++|...|+|.+-.+.... ....+....+.|.-|+.. ..+|++++. -.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl-~r 190 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL-TR 190 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh-hh
Confidence 11 113467899999999999999999999999998887621 122233345667777766 233443333 23
Q ss_pred EEEEECCCCceEEEEcc-CCC-CeEEEEEcCC----CCEEEEEECCCeEEEEECCC-CeeEEEeec-------------C
Q 005123 294 VKLWDAKSGRELCSFHG-HKN-MVLCVKWNQN----GNWVLTASKDQIIKLYDIRA-MKELESFRG-------------H 353 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~-h~~-~I~si~fspd----g~~Latgs~Dg~I~IwDl~t-~~~l~~~~~-------------h 353 (713)
..+++++..+....=+. .++ .-...+|-+. ..-+++++.-| .|+|..+- |+.+.+..- +
T Consensus 191 ~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~ 269 (726)
T KOG3621|consen 191 CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPI 269 (726)
T ss_pred hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccC
Confidence 44555553321111011 111 1233444442 33444455444 67776542 443333210 0
Q ss_pred CC----------------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeC
Q 005123 354 RK----------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSND 417 (713)
Q Consensus 354 ~~----------------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~D 417 (713)
.+ ....+.+- ++..+++-++-| |+|+|.++... .....-...|.+++.+.+..++...|
T Consensus 270 ~s~esp~~~~~~~~~q~ls~~k~~~l--~~~~vLa~te~G-iyv~d~~~~~v--~l~se~~~DI~dVs~~~neiFvL~~d 344 (726)
T KOG3621|consen 270 RSLESPNQRSLPSGTQHLSLSKSSTL--HSDRVLAWTEVG-IYVFDSNNSQV--YLWSEGGHDILDVSHCGNEIFVLNLD 344 (726)
T ss_pred CCcCCccccCCCCCccccccceeEEe--ecceEEEeecce-EEEEEeccceE--EEeecCCCceeEEeecCceEEEEecC
Confidence 00 01111111 233444444444 88888765442 22222345677777777777777777
Q ss_pred CcEEEEecCCC
Q 005123 418 HTTKFWCRNRP 428 (713)
Q Consensus 418 g~v~iWd~~~~ 428 (713)
+.+++..+...
T Consensus 345 ~~l~~~sv~s~ 355 (726)
T KOG3621|consen 345 RGLKVESVASR 355 (726)
T ss_pred CceeEEEeehh
Confidence 77777665443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-05 Score=84.13 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=161.2
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCc-EEEEEcCCCceeeeeccCCCCe--eEEEEecCCCEEEEEEC-----CCeEEEEEcC
Q 005123 188 AIRSMVWSH-NDNWMVSGDDGGA-IKYWQNNMNNVKANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFA 258 (713)
Q Consensus 188 ~V~sl~~sp-dg~~L~sgs~DG~-I~vwdl~~~~~~~~~~~~~~~V--~~l~fs~dg~~Las~s~-----Dg~I~iwDl~ 258 (713)
....++.+| +...++.+-+-|+ ..+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 4456666766664 6789999998877765443332 24679999999998744 5789999998
Q ss_pred -CCeeEEEEccCCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceEEEEc----cCCCCe
Q 005123 259 -RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMV 315 (713)
Q Consensus 259 -~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~------------------Dg~I~IwDl~t~~~~~~~~----~h~~~I 315 (713)
+.+.+.++..+.-.-..|.+.+|++.|+++.- +-+|.+.|.++|+.+.+.. .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 67778888888877888999999988887632 3347777888998877643 377789
Q ss_pred EEEEEcCCCCEEEEEECCC-------eEEEEECCCCeeEEEee-------cCCCCeEEEEEeCCCCCEE-EEEECCCcEE
Q 005123 316 LCVKWNQNGNWVLTASKDQ-------IIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEEYF-VSGSLDGSIF 380 (713)
Q Consensus 316 ~si~fspdg~~Latgs~Dg-------~I~IwDl~t~~~l~~~~-------~h~~~V~sl~fsp~~~~~l-asgs~DG~I~ 380 (713)
..+++..+|..++..-..+ .|.+++... .+..+. .-...|-+|+++. ++.++ +|+-..+.+.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEE
Confidence 9999999987666554433 244444332 232222 2346799999998 55544 5666677899
Q ss_pred EEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 381 Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
+||..++..+... .-..+..++...+++++.+..|. +|.++....
T Consensus 243 ~~d~~tg~~~~~~---~l~D~cGva~~~~~f~~ssG~G~--~~~~~~~~~ 287 (305)
T PF07433_consen 243 VWDAATGRLLGSV---PLPDACGVAPTDDGFLVSSGQGQ--LIRLSPDGP 287 (305)
T ss_pred EEECCCCCEeecc---ccCceeeeeecCCceEEeCCCcc--EEEccCccc
Confidence 9999777633322 23457888888888554444444 555544333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-07 Score=101.59 Aligned_cols=182 Identities=23% Similarity=0.323 Sum_probs=134.8
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
...++|++++ +++|+.|..+|.|++++....- .+...|... ..+|.++++|+.||+|.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567777775 6899999999999999876543 222233333 55899999999999999999988777766
Q ss_pred EccCCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCC--CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 266 LTGHGWDVKSVDWHPT-----KSLLVSGGKDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 266 l~~h~~~V~sl~~spd-----g~~L~sgs~Dg~I~IwDl~t--~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
+. ....+.+|+++|+ .+.+++|+.-| +.++.-+= .+.-..+....+.|.+++| .|++||-++.+| |+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEE
Confidence 65 5578999999997 56899999888 77775331 1222245567789999999 588999998887 999
Q ss_pred EECCCCeeEEEeecCCCC------eEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 339 YDIRAMKELESFRGHRKD------VTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~------V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
||+.+.+.+..+.-.... -..+.|.+ +..|+.|=.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 999988887766533322 34677875 4556655444 89999887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=99.43 Aligned_cols=207 Identities=12% Similarity=0.169 Sum_probs=143.5
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEEEeCCC-----cEEEEEcCCC---c--
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGG-----AIKYWQNNMN---N-- 219 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~DG-----~I~vwdl~~~---~-- 219 (713)
+|++.+..+|.|+.+|.|.+++-. .+.+..++.+... |..+....+.++|++.+.|+ .|+||+++.- +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467788899999999999998843 4555777777777 54444444447888777664 4899998643 1
Q ss_pred -ee---eeec----cCCCCeeEEEEecCCCEEEEEECCCeEEEEEc--C--CCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 220 -VK---ANKS----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--A--RCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 220 -~~---~~~~----~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl--~--~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+. +.+. .....+.+++++.+-+.+|+|-.||.|..+.- . .+............|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 22 1111 13457889999999999999999999999842 1 22222333345678999999998887444
Q ss_pred EeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEE
Q 005123 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTA 359 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~s 359 (713)
+..-..|.+|.+.... .+..+..|...+.|.++++...-|++++ +..|.+||....+....|. +|+.....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4445679999988433 2455777888899999987555455554 4469999998777777776 66554443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-06 Score=96.38 Aligned_cols=271 Identities=9% Similarity=0.021 Sum_probs=162.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC------EE--EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccC
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA------IR--SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~------V~--sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~ 227 (713)
+..|++++.++.|+-+|..+++.+-.+...... +. .++.. ++..+++++.++.|..+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 446777888899999999998877665443220 10 11111 2267888889999999999999988776543
Q ss_pred CCC-----ee-EEEEecCCCEEEEEE---------CCCeEEEEEcCCCeeEEEEccCCCc--------------------
Q 005123 228 KES-----VR-DLSFCRTDLKFCSCS---------DDTTVKVWDFARCQEERSLTGHGWD-------------------- 272 (713)
Q Consensus 228 ~~~-----V~-~l~fs~dg~~Las~s---------~Dg~I~iwDl~~~~~~~~l~~h~~~-------------------- 272 (713)
... +. ...+. + ..++.++ .++.|..+|.++++.+-.+......
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 12222 2 3444443 3678999999999887766532110
Q ss_pred e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceEEEEccCCCCe------EEEEEc----CC
Q 005123 273 V-KSVDWHPTKSLLVSGGKDS------------------LVKLWDAKSGRELCSFHGHKNMV------LCVKWN----QN 323 (713)
Q Consensus 273 V-~sl~~spdg~~L~sgs~Dg------------------~I~IwDl~t~~~~~~~~~h~~~I------~si~fs----pd 323 (713)
| .+.++++.+.++++++.|+ .|.-+|+++++.+.++......+ ....+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234444567788887665 69999999999988765321111 111111 23
Q ss_pred CC---EEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE-----------------EECCCcEEEEE
Q 005123 324 GN---WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS-----------------GSLDGSIFHWL 383 (713)
Q Consensus 324 g~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las-----------------gs~DG~I~Iwd 383 (713)
+. .+++++.+|.+..+|.++++.+....... ..++.++ +.+++. ...+|.|.-.|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 43 67788899999999999999987765221 1122222 222221 12356787888
Q ss_pred cCCCCceEEEeccc-C------CCe--EEEEEcCCCcEEEEeCCcEEEEecCCCCCcccc
Q 005123 384 VGHETPQVEIHNVH-D------NTV--WDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 384 ~~~~~~~~~~~~~h-~------~~V--~~l~~spdg~~laS~Dg~v~iWd~~~~~~~~~~ 434 (713)
+.+++.+.+..... . ... ..+....+-.++++.|+.|+.+|.+..+...+.
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 87776554443220 0 111 123344443444568999999988666555543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=88.48 Aligned_cols=197 Identities=8% Similarity=0.133 Sum_probs=119.0
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-------cCCCEEEEEEccCC------CEEEEEeCCCcEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHND------NWMVSGDDGGAIKY 212 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-------h~~~V~sl~~spdg------~~L~sgs~DG~I~v 212 (713)
.=+.++||+|+.+||.+...|+|+|||+...++ ..+.. -..+|..+.|.... ..|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 346789999999999999999999999876433 23221 23567777775532 24666677888877
Q ss_pred EEcCCC-----ceeee--e-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-
Q 005123 213 WQNNMN-----NVKAN--K-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS- 283 (713)
Q Consensus 213 wdl~~~-----~~~~~--~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~- 283 (713)
|-+..+ ..... + ......|+++.+++..++|++++.... +++. -++....+++-.+..+.-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 765322 12222 2 224668999999999888887765322 0000 001111222222211111
Q ss_pred -EEEEEeCCC------cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 284 -LLVSGGKDS------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 284 -~L~sgs~Dg------~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
..++...|. +..+|.+-+.+...........|..++.||||++||+...+|.|.+|++-+.+....+..+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 011111111 1233333332222222335678999999999999999999999999999988777666543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-08 Score=95.08 Aligned_cols=147 Identities=20% Similarity=0.328 Sum_probs=102.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-EEEccCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeeEEEeecCC
Q 005123 281 TKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs-----~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.++.++++..||.+.+++.+.-..+ .++........+.++...+++|.++. .-+..++|+++-.+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4677999999999999998762211 11111111112222333445444432 23356777776544433333333
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC---cEEEEeCCcEEEEecCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~laS~Dg~v~iWd~~~ 427 (713)
..|++++-+|.-..++++|+.||.|.+||.+.......++.+|+.+|+.+-|+|.. .++|++||.+--||-+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45999999997778899999999999999999888888889999999999999765 67788999999998763
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-08 Score=100.30 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=119.9
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceEEEEccCCCCeEEE
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCV 318 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-----~~~~~~~~h~~~I~si 318 (713)
++.+.+-.|-+-|++++... .|. ..+.|.++.|.-.+++++.|+.+|.|..+|++.+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 45556777888898876432 333 5678999999988999999999999999999864 2344444 88999998
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCCee---EEEeecCCCCeEEEEE--eCCCCCEEEEEECCCcEEEEEcCCCCceEE
Q 005123 319 KWNQ-NGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRKDVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 319 ~fsp-dg~~Latgs~Dg~I~IwDl~t~~~---l~~~~~h~~~V~sl~f--sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
..-. ++.+|.+.+.+|+|++||++..++ +..+.+|...-.-+-+ ++ .+..|+++++|...+||.++++.....
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeec
Confidence 8766 788999999999999999998777 8888998765444433 34 567888999999999999987764433
Q ss_pred Eec---ccCCCeEEEEEc
Q 005123 393 IHN---VHDNTVWDLAWH 407 (713)
Q Consensus 393 ~~~---~h~~~V~~l~~s 407 (713)
+.. ..+..+.+++|+
T Consensus 384 ipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCCCCccccccccceehh
Confidence 321 123345566654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-06 Score=96.10 Aligned_cols=198 Identities=13% Similarity=0.208 Sum_probs=137.4
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc----CC--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR-- 259 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl----~~-- 259 (713)
+..|.++.|..+.+.|+.+..+|.|.+-|.++...... ......|.+++|++|+..++..+.+.+|.+-+. -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 46899999999999999999999999998877654332 345678999999999999999998888776432 00
Q ss_pred -----------------CeeEEEEccC---------------------CCceEEEEEcCCCCEEEEEe-----CCCcEEE
Q 005123 260 -----------------CQEERSLTGH---------------------GWDVKSVDWHPTKSLLVSGG-----KDSLVKL 296 (713)
Q Consensus 260 -----------------~~~~~~l~~h---------------------~~~V~sl~~spdg~~L~sgs-----~Dg~I~I 296 (713)
++....+.+. .+.=++|+|--||.++++.. ...+|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0111112211 11123599999999998843 2378999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeeEE----EeecCCCCeEEEEEeCCCCCE
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELE----SFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs---~Dg~I~IwDl~t~~~l~----~~~~h~~~V~sl~fsp~~~~~ 369 (713)
||.+ +..-..-....+.-.+++|-|.|.++++-. +|+.|.+|.-+ |-.-. .+......|..++|+. ++.+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC-CCCc
Confidence 9976 544333333445567899999999998753 45678888854 32222 2233334489999998 7888
Q ss_pred EEE---EECCCcEEEEEcCCC
Q 005123 370 FVS---GSLDGSIFHWLVGHE 387 (713)
Q Consensus 370 las---gs~DG~I~Iwd~~~~ 387 (713)
|++ ......|++|-+.+.
T Consensus 304 LAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeeecccccceEEEEEecCe
Confidence 877 444445999988654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-07 Score=104.09 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=143.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
++..++.|+....+..+|+.+.+..+........|+-++. ++++|++|...|+|.+-|.++.+.+.++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4566788888888999999998887777666666766665 67999999999999999999999999999999999988
Q ss_pred EEecCCCEEEEEEC---------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECC---C
Q 005123 235 SFCRTDLKFCSCSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK---S 301 (713)
Q Consensus 235 ~fs~dg~~Las~s~---------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~---t 301 (713)
.. .|+.|++|+. |..|+|||++..+.+.-+.-+.+. .-+.|+|. ...+++++..|.+.+.|.. +
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 77 6889999875 556899999877665554433332 45667773 4578888889999999943 3
Q ss_pred C-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 302 G-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 302 ~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
- ..+.-+......+..+++|++++.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 223344445566999999999999999999999999973
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-07 Score=101.45 Aligned_cols=182 Identities=14% Similarity=0.207 Sum_probs=133.2
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... ..+|.++++|+.||+|.|..+.+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567777776 6789999999999999976432 333344433 55899999999999999999888776665
Q ss_pred eccCCCCeeEEEEecC-----CCEEEEEECCCeEEEEEcC--CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 224 KSAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~d-----g~~Las~s~Dg~I~iwDl~--~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+ .....+.+++++|+ .+.+++|+.-| +.++.-+ ..+....+....+.|.+++|. |+++|-++.+| |+|
T Consensus 109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 4 45778999999997 46789998888 7776532 111122455667899999998 88999988777 999
Q ss_pred EECCCCceEEEEccCCC------CeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKN------MVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~------~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
||+.+++.+..+..... .-..+.|.++. .|+.|-.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 99998887766653322 23457787554 46656544 68888887
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=93.79 Aligned_cols=241 Identities=11% Similarity=0.110 Sum_probs=146.5
Q ss_pred eeCCCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~ 216 (713)
.+.+|..-|..++||+..+ +|..++.+.+|+|.|+++...+..+..+ ..+.+++|.-|. ++|+.|..+|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4667888999999999887 7888999999999999999998888887 889999998876 567788899999999988
Q ss_pred CCce-eeeecc--CCCCeeEEEE------ecCCCEEEEEECCCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCCC
Q 005123 217 MNNV-KANKSA--HKESVRDLSF------CRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 217 ~~~~-~~~~~~--~~~~V~~l~f------s~dg~~Las~s~Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg~ 283 (713)
..+- +..+.+ ....|..|+. ...+.+|+..+.+ +..|++.-.. .+..+ +..+.+.++..++..+
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSN 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeecCccc
Confidence 6532 222211 2233333332 2234444444433 5566653211 11222 1234555666666445
Q ss_pred EEEEEeCC-C------cEEE-EECCCCceEEEEcc-C-CCC------eEEEEEcCCCCEEE-EEECCCeEEEEECCCCee
Q 005123 284 LLVSGGKD-S------LVKL-WDAKSGRELCSFHG-H-KNM------VLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 284 ~L~sgs~D-g------~I~I-wDl~t~~~~~~~~~-h-~~~------I~si~fspdg~~La-tgs~Dg~I~IwDl~t~~~ 346 (713)
.++..... - .|.. -|-++|..+...+. + .+. -..+.-.++.++|+ ++.+.+.+.+||..+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 55444332 1 0111 12233333322211 1 110 11122233455555 555677899999999999
Q ss_pred EEEeecCCCCeEEEEEeCCCC-CEEEEEECCCcEEEEEcC
Q 005123 347 LESFRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~-~~lasgs~DG~I~Iwd~~ 385 (713)
+.++.. +..|.+++....++ .+|++-. |..++||..+
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 988874 47788877655443 4555555 5588888654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-05 Score=91.62 Aligned_cols=229 Identities=10% Similarity=0.080 Sum_probs=145.7
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCC-----EE-EEEEccCCCEEEEEe---------CCCcEEEEEcCCCcee
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IR-SMVWSHNDNWMVSGD---------DGGAIKYWQNNMNNVK 221 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~-----V~-sl~~spdg~~L~sgs---------~DG~I~vwdl~~~~~~ 221 (713)
..+++++.++.|+-+|.++++.+-.+...... |. +..+. +.++++++ .+|.|..+|.++++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888889999999999999988776543321 11 12222 24555553 3678999999999887
Q ss_pred eeeccCCCC--------------------e-eEEEEecCCCEEEEEECCC------------------eEEEEEcCCCee
Q 005123 222 ANKSAHKES--------------------V-RDLSFCRTDLKFCSCSDDT------------------TVKVWDFARCQE 262 (713)
Q Consensus 222 ~~~~~~~~~--------------------V-~~l~fs~dg~~Las~s~Dg------------------~I~iwDl~~~~~ 262 (713)
..+...... | ...++...+..+++++.++ .|.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 765432110 1 1233444566777776554 799999999998
Q ss_pred EEEEccCCCce------EEEEEc----CCCC---EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 263 ERSLTGHGWDV------KSVDWH----PTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 263 ~~~l~~h~~~V------~sl~~s----pdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+-.+......+ ....+. -++. .+++++.+|.|..+|.++|+.+...... ...++.++ +.+++
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 87764221111 001111 1333 6788889999999999999988765421 11223333 33333
Q ss_pred E------------------ECCCeEEEEECCCCeeEEEeecCC--------CCe--EEEEEeCCCCCEEEEEECCCcEEE
Q 005123 330 A------------------SKDQIIKLYDIRAMKELESFRGHR--------KDV--TALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 330 g------------------s~Dg~I~IwDl~t~~~l~~~~~h~--------~~V--~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
+ ..+|.|.-+|+++++.+.+..... ... ..+.. .+.+|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEE
Confidence 2 236789999999999887765431 111 12222 4567888889999999
Q ss_pred EEcCCCCceEEEec
Q 005123 382 WLVGHETPQVEIHN 395 (713)
Q Consensus 382 wd~~~~~~~~~~~~ 395 (713)
+|.++++.+.+...
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99998887666543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=96.81 Aligned_cols=209 Identities=11% Similarity=0.104 Sum_probs=153.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEEec--cCCCEEEEEEccCC---CEEE-EEeCCCcEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHND---NWMV-SGDDGGAIK 211 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~--h~~~V~sl~~spdg---~~L~-sgs~DG~I~ 211 (713)
.+..|...|.+++.+-|+.++.+.+. |..++++|+++...+..++. -.+.+.++. + .| ..|+ +...++.|.
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-s-kGd~~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-S-KGDKISLIAVSLFKSGKIF 125 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEec-C-CCCeeeeEEeecccCCCcE
Confidence 35568888999999999999999777 99999999988766543332 222222221 2 22 1344 334678999
Q ss_pred EEEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC------CeeEEE---------EccCCCceE
Q 005123 212 YWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------CQEERS---------LTGHGWDVK 274 (713)
Q Consensus 212 vwdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~------~~~~~~---------l~~h~~~V~ 274 (713)
|+|-.... .......|...|..+.+++.+..+++....|.|..|..+. .+.... +........
T Consensus 126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred EECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 99865443 3444467899999999999999999999999999998762 111111 122345678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC---------------------------------CCCeEEEEEc
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---------------------------------KNMVLCVKWN 321 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h---------------------------------~~~I~si~fs 321 (713)
++.|++++..+.+-+.|.+|+++++++++.++.+... ...-+.++|.
T Consensus 206 s~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred ceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 9999999999999999999999999999876554311 1124567888
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
..+++|+.++-=| |+|.++.++++++.+
T Consensus 286 es~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 286 ESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred CCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 8999999998776 899999988877665
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=97.54 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=122.4
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-----eeEEEEccCCCceEEE
Q 005123 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSV 276 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-----~~~~~l~~h~~~V~sl 276 (713)
++.+.+-.|-+-|++++..... ..++.|.++.|...+++++.|+.+|.|.++|++.. .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccccc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4455567788888888754432 25778999999998999999999999999999764 3344444 88999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEECCCCce---EEEEccCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 277 DWHP-TKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVK--WNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 277 ~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~---~~~~~~h~~~I~si~--fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
.... ++.+|++.+.+|+|++||++--++ +..+++|-+.-.-+- ..+.+..|++++.|-..+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8877 788999999999999999997666 888888866544433 3456678888999999999999999998887
Q ss_pred ecCC----CCeEEEEEe
Q 005123 351 RGHR----KDVTALAWH 363 (713)
Q Consensus 351 ~~h~----~~V~sl~fs 363 (713)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6432 234555553
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-05 Score=79.49 Aligned_cols=241 Identities=9% Similarity=0.081 Sum_probs=150.1
Q ss_pred EEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccCC-C------EEEEEEccCCCEEEEEeC--CCcE
Q 005123 150 VLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-A------IRSMVWSHNDNWMVSGDD--GGAI 210 (713)
Q Consensus 150 v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~~-~------V~sl~~spdg~~L~sgs~--DG~I 210 (713)
+.+++|++.+++++ .+-.|.+||..+......+..-.+ . ...++++.|++++++... .-+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 56788888888753 245699999999887776543322 1 234578889998887643 4678
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEEEE----ccCCCc-eEEEEEcCCCCE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSL----TGHGWD-VKSVDWHPTKSL 284 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~~l----~~h~~~-V~sl~~spdg~~ 284 (713)
.|.|+..++.+..+..- .+. +.+-.....|.+.|.||++....+. .++...+. ...... +..-.+...+..
T Consensus 121 tVVDl~~~kvv~ei~~P--GC~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTP--GCW-LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTTTEEEEEEEGT--SEE-EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEECCCCceeeeecCC--CEE-EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 99999999887765321 122 2222233568888899999998886 44443222 111122 223344555666
Q ss_pred EEEEeCCCcEEEEECCCCceE--EEEccC------CC----CeEEEEEcCCCCEEEEEEC---CC-------eEEEEECC
Q 005123 285 LVSGGKDSLVKLWDAKSGREL--CSFHGH------KN----MVLCVKWNQNGNWVLTASK---DQ-------IIKLYDIR 342 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~--~~~~~h------~~----~I~si~fspdg~~Latgs~---Dg-------~I~IwDl~ 342 (713)
++..+.+|.|+-.|+...... ..+... .+ .-.-+++++..+.|++.-. ++ .|.+||+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 777888999999998765422 122111 11 1233677776555554322 11 59999999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEe
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~ 394 (713)
+.+.+..+.. ...+.+|..+.++.-+|++.+ .++.|.|||..+++....+.
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9999988874 345779999986666776654 57899999999886555443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-06 Score=93.86 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=138.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC-eeEEEEecCCCEEEEEECCC-----eEEEEEcCCC------
Q 005123 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC------ 260 (713)
Q Consensus 193 ~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~------ 260 (713)
+|++.+..++.|+.+|.|.+++-. -..+..+..+... |..+....+.++|++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 466778899999999998887532 2333556666666 55555555557788877765 4999999643
Q ss_pred eeE--EEEcc-----CCCceEEEEEcCCCCEEEEEeCCCcEEEEE--CCC--CceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 261 QEE--RSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWD--AKS--GRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 261 ~~~--~~l~~-----h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD--l~t--~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
.++ ..+.. ....+.+++++.+-+.+|+|-.||.|.++. +.. +.........+..|+.+.+..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 12222 345688999999999999999999999984 221 2222223345678999999999887444
Q ss_pred EECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 330 ASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+.....|.+|.+.... .+..+..|...+.|..+++ ....|++++. ..|.+|+.+.......+..+|..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 4445579999998444 2555778888999999987 3443554443 37999998766666555545543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=87.30 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=118.5
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~ 260 (713)
.+.........+.++|+++++++++ ||...|+.....+... .+...+++|.. .+.+|+-..+++|.|+.--+.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 3444455678999999999999955 6788888743333222 24456788888 455777777889999743222
Q ss_pred eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 261 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
+....+.. ...+..|-. |.+|++.+. +.|.+||+.+++.++++... .|..+.|++++++++..+.+ .+.|++
T Consensus 100 ~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22223331 223444443 777777765 48999999999999998733 38999999999999988866 577877
Q ss_pred CCCC-----------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-
Q 005123 341 IRAM-----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP- 408 (713)
Q Consensus 341 l~t~-----------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp- 408 (713)
.+.. ..+..+......|.+.+|.. + .|+-.+.. .|+.+ +......+.. -+..+.=+.+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkYl-~~Ge~~~i~~---ld~~~yllgy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKYL-VNGETGIIAH---LDKPLYLLGYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEEE-ETTEEEEEEE----SS--EEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEEE-EcCCcceEEE---cCCceEEEEEEcc
Confidence 5532 03333333356788999974 2 44444444 77763 2222212222 245566666776
Q ss_pred -CCcEEEEeCCcEEEEecCC
Q 005123 409 -IGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 409 -dg~~laS~Dg~v~iWd~~~ 427 (713)
+..+++..|+.|..+.++.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTEEEEE-TT--EEEEE--H
T ss_pred CCEEEEEECCCCEEEEEECH
Confidence 3334444777777777643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00018 Score=79.57 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCceEEEEEcC-CCCEEEEE----eCCCc----EEEEECCCCceEE---EEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005123 270 GWDVKSVDWHP-TKSLLVSG----GKDSL----VKLWDAKSGRELC---SFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 270 ~~~V~sl~~sp-dg~~L~sg----s~Dg~----I~IwDl~t~~~~~---~~~~h~~~I~si~fspdg~~Latgs~Dg~I~ 337 (713)
+....++.|+- +...+.+. +.+|. -++|++...+.-+ +.....+.|.|++++++.+.|+.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456777776 33444443 22343 4567765543211 1123677899999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 338 IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+||...+... +....-..+.++|+| ++.+|++|+..|.|.+||+.-..
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9998765333 223445678999999 89999999999999999996544
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-08 Score=105.95 Aligned_cols=258 Identities=16% Similarity=0.244 Sum_probs=159.9
Q ss_pred CCCceEEEEEccCCC--EEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccC-CCEEEEEe----CCCcEEEE
Q 005123 143 NRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHN-DNWMVSGD----DGGAIKYW 213 (713)
Q Consensus 143 H~~~V~~v~~spdg~--~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spd-g~~L~sgs----~DG~I~vw 213 (713)
....+.|+++.-+.+ .+++|..+|.|.+-....... ......+....++++|++- .+.||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 344678888776554 678899999999887654221 2344567788999999874 46677663 45789999
Q ss_pred EcCCC--c--eeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEE
Q 005123 214 QNNMN--N--VKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLV 286 (713)
Q Consensus 214 dl~~~--~--~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~ 286 (713)
|+.+. . ....+.. ......+++|..+.+++.+|...+.|.++|++.. .....+ ....+..+.++| ..++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 99876 1 1112222 4456678999999999999999999999999732 222222 334577788888 677776
Q ss_pred EEeCCCcEEEEE-CCCCce-EEEEccCC----CCeEEEEEcCCC-CEEEEEE-CCCeEEEEECCCC------e--eE---
Q 005123 287 SGGKDSLVKLWD-AKSGRE-LCSFHGHK----NMVLCVKWNQNG-NWVLTAS-KDQIIKLYDIRAM------K--EL--- 347 (713)
Q Consensus 287 sgs~Dg~I~IwD-l~t~~~-~~~~~~h~----~~I~si~fspdg-~~Latgs-~Dg~I~IwDl~t~------~--~l--- 347 (713)
+-. |+.|.+|| .++-+. +..+.... ..+..++|.|.. ..+++.. ..++|+++|+..- + ..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 655 89999999 443322 22222122 248899999942 3344444 4568999998521 0 11
Q ss_pred EE---eecCC--CCeEEEEEeCCC-CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 348 ES---FRGHR--KDVTALAWHPFH-EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 348 ~~---~~~h~--~~V~sl~fsp~~-~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
.. ++... +.|.+..|++.+ -+..+++-.+-.+.-+++.. ++...|.++.+.|-|+-
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e-----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE-----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh-----heecccCCCcccchhhh
Confidence 11 22112 467788888744 23444454454555555422 23333444666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-05 Score=85.58 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=124.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
........+.++|+|+++++ +.||...||.....+.... +.-..++|.. .+.+|+-..++.|.|+.--..+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence 34455789999999999988 5588899998554443322 2334678887 455777777889999743222221
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
..+.. ...+..|-. |..|+..+.+ .|.+||+.+++.++.+... .|..|.|++++++++..+++ .+.|++.+.
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 22211 123444433 7777777655 8999999999999998743 38999999999999998865 577776543
Q ss_pred C-----------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 302 G-----------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 302 ~-----------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
. ..+..+......|.+.+|..| .|+..+.. .|+. +..|+ ..++..-+..+.-+...+ ..+.+
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~-~~~~l 247 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLP-KENRL 247 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEET-TTTEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEc-cCCEE
Confidence 2 133444433567899999655 56655555 6665 33343 233333345667777776 56778
Q ss_pred EEEECCCcEEEEEcC
Q 005123 371 VSGSLDGSIFHWLVG 385 (713)
Q Consensus 371 asgs~DG~I~Iwd~~ 385 (713)
.....|+.|..+.++
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 888888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-05 Score=87.92 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=139.4
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCceEEEEecc-CCCEEEEE-------------------EccCCCEEEE-EeCCCcEEE
Q 005123 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMV-------------------WSHNDNWMVS-GDDGGAIKY 212 (713)
Q Consensus 155 dg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~-------------------~spdg~~L~s-gs~DG~I~v 212 (713)
||++|++-.. +..|-..+++..++.+.+..- ...+..++ +++||+.+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7788888764 566777777776665554321 12222222 3445554432 233466777
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
+|.++.++...+.. ......++++++++++++++.+ .++...+..+...+..+... .+ .++..+|++..+
T Consensus 220 ID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V- 293 (635)
T PRK02888 220 VDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI- 293 (635)
T ss_pred EECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE-
Confidence 88887776666543 3355678899999998887632 23333333322222222110 01 133457776666
Q ss_pred eCCCcEEEEECCC----CceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee------------EEEee
Q 005123 289 GKDSLVKLWDAKS----GRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------LESFR 351 (713)
Q Consensus 289 s~Dg~I~IwDl~t----~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~------------l~~~~ 351 (713)
.+++|.++|.++ +..+..+..-......+.++|||+++++++ .+.+|.|+|+.+.+. +.+..
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 333333333556688999999999988766 488999999987653 22333
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
. ...-...+|.. +++.+.|...|..|..||+.+
T Consensus 373 v-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 2 23345677887 678888889999999999865
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00023 Score=76.29 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=136.3
Q ss_pred EEEccCCCEEEEEEC-C--CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 150 VLWTPTGRRLITGSQ-S--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 150 v~~spdg~~Latgs~-d--g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
=+|..||++|+.++. | ..+++.|+.+++....-.+.........++++++.|+-...+..|+-.|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 367889987776655 4 5577778998876654443222233566778888887666667899999999887777666
Q ss_pred CCCCeeEEEEe--cCCCEEEEEEC----------------------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC
Q 005123 227 HKESVRDLSFC--RTDLKFCSCSD----------------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 227 ~~~~V~~l~fs--~dg~~Las~s~----------------------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg 282 (713)
....+-...|. .|+.+++..-. ...|...|+.+++....+. ....+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 66666545553 45555543211 1346677888877655554 56788999999954
Q ss_pred -CEEEEEeC---CC-cEEEEECCC-CceEEEEccCC--CCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeeEEE
Q 005123 283 -SLLVSGGK---DS-LVKLWDAKS-GRELCSFHGHK--NMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELES 349 (713)
Q Consensus 283 -~~L~sgs~---Dg-~I~IwDl~t-~~~~~~~~~h~--~~I~si~fspdg~~Latgs-----~Dg~I~IwDl~t~~~l~~ 349 (713)
.+|+.|-+ |. .-+||-+++ +...+.+..+. ..+..=-|.+||+.|..-+ .+..|.-+|+.+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 45555543 11 135564433 33344443332 2344446899998877533 244688888988765443
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEECCC----------------cEEEEEcCCCCceEEEecccC---------CC--eE
Q 005123 350 FRGHRKDVTALAWHPFHEEYFVSGSLDG----------------SIFHWLVGHETPQVEIHNVHD---------NT--VW 402 (713)
Q Consensus 350 ~~~h~~~V~sl~fsp~~~~~lasgs~DG----------------~I~Iwd~~~~~~~~~~~~~h~---------~~--V~ 402 (713)
... .....+..++ +++++|.=+.|. .|+++++..+... .+..|. .. =-
T Consensus 280 ~~~--p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~--~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 280 MEM--PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR--KLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEE---SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEE--EEEE-------BTTBSSTT--
T ss_pred EeC--CceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee--eeeeccCcceeecCCCccCCC
Confidence 322 2334555556 677776544432 4556777544321 111121 11 13
Q ss_pred EEEEcCCCcEEE--E-eCCcEEEEecCCC
Q 005123 403 DLAWHPIGYLLC--S-NDHTTKFWCRNRP 428 (713)
Q Consensus 403 ~l~~spdg~~la--S-~Dg~v~iWd~~~~ 428 (713)
...|+||++.+. | .+|...||-++..
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 468999996663 4 6788888866443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.8e-05 Score=85.29 Aligned_cols=260 Identities=11% Similarity=0.057 Sum_probs=152.1
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEeccC-------------CCEE-------EEEE--------c-----cCCCEEEEEe
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAHD-------------HAIR-------SMVW--------S-----HNDNWMVSGD 205 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h~-------------~~V~-------sl~~--------s-----pdg~~L~sgs 205 (713)
+.+|+..|.|+|+-+.+.+.++.+...+ ..|. .+.| | -||++|++-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5678888999999888877766543110 1111 1111 1 1667888776
Q ss_pred C-CCcEEEEEcCCCceeeeecc-CCCCeeEEE-------------------EecCCCEEEEE-ECCCeEEEEEcCCCeeE
Q 005123 206 D-GGAIKYWQNNMNNVKANKSA-HKESVRDLS-------------------FCRTDLKFCSC-SDDTTVKVWDFARCQEE 263 (713)
Q Consensus 206 ~-DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~-------------------fs~dg~~Las~-s~Dg~I~iwDl~~~~~~ 263 (713)
. +..|...+++..++...+.. ....+..+. +.+|++.+... -..+.+.++|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 45566666655443333211 111222222 23455444322 22456777888877666
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
..+.. ......++++++++++++.+.+. ++...+..+...+..+.-.. + ..+..+|++..+ .++.|.++
T Consensus 229 ~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 229 WQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred EEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEE
Confidence 66543 23556788999999998886432 23333333322222222100 0 133457887776 36789999
Q ss_pred ECCC----C-eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce-----------EEEecccCCCeEE
Q 005123 340 DIRA----M-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ-----------VEIHNVHDNTVWD 403 (713)
Q Consensus 340 Dl~t----~-~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~-----------~~~~~~h~~~V~~ 403 (713)
|.++ + +.+..+. -......++++|++..+++++..+.+|.|.|+.+.... ...... ...-..
T Consensus 302 D~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLH 379 (635)
T PRK02888 302 DGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLH 379 (635)
T ss_pred ECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcce
Confidence 9998 3 4444444 55677899999954455556666999999999775431 111111 223345
Q ss_pred EEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 404 LAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 404 l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.+|+.+|....| .|..|..|+++.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHH
Confidence 789999877766 899999999876
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00032 Score=78.15 Aligned_cols=240 Identities=13% Similarity=0.112 Sum_probs=134.3
Q ss_pred ceEEEEEccCCCEEEEE-ECCC----cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC-----------c
Q 005123 146 SINRVLWTPTGRRLITG-SQSG----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-----------A 209 (713)
Q Consensus 146 ~V~~v~~spdg~~Latg-s~dg----~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG-----------~ 209 (713)
.+..+++|+|+++||.+ +..| .|+|+|+++++.+...... .....+.|.+|++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34568899999999866 3334 4999999999766532111 1122499999988877654333 3
Q ss_pred EEEEEcCCCcee--eeeccCCC-C-eeEEEEecCCCEEEEEEC---C-CeEEEEEcCCC----eeEEEEccCCCce-EEE
Q 005123 210 IKYWQNNMNNVK--ANKSAHKE-S-VRDLSFCRTDLKFCSCSD---D-TTVKVWDFARC----QEERSLTGHGWDV-KSV 276 (713)
Q Consensus 210 I~vwdl~~~~~~--~~~~~~~~-~-V~~l~fs~dg~~Las~s~---D-g~I~iwDl~~~----~~~~~l~~h~~~V-~sl 276 (713)
|++|++.+.... ..+..... . ...+..+.|+++|+..+. + ..|++.|+... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 777887766322 33333232 2 678889999999776443 2 35788888764 2333333333334 344
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEECCCCce---EEEEccCCC--CeEEEEEcCCCCEEEEE-ECCC--eEEEEECCCCe
Q 005123 277 DWHPTKSLLVSGGK---DSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTA-SKDQ--IIKLYDIRAMK 345 (713)
Q Consensus 277 ~~spdg~~L~sgs~---Dg~I~IwDl~t~~~---~~~~~~h~~--~I~si~fspdg~~Latg-s~Dg--~I~IwDl~t~~ 345 (713)
... .+.+++.... ++.|...++.+... ...+..+.. .+..+.. .+++|+.. ..++ .|+++|+..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 444 3444444322 35677788887652 223444444 3444444 45555544 4444 68999998344
Q ss_pred eEEEeec-CCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCCc
Q 005123 346 ELESFRG-HRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETP 389 (713)
Q Consensus 346 ~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~~ 389 (713)
....+.. -.+.|..+........++++.+. -++|+.||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444433 33446666655544555555444 24677888876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.7e-05 Score=82.90 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=124.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--------------------------e-----------------EEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--------------------------F-----------------EMIL 182 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--------------------------~-----------------~~~l 182 (713)
.|+++.|+.+..-|++|..+|.|.||.....+ + ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999998522110 0 0112
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec--------cCCCCeeEEEEec-----CC---CEEEEE
Q 005123 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------AHKESVRDLSFCR-----TD---LKFCSC 246 (713)
Q Consensus 183 ~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~--------~~~~~V~~l~fs~-----dg---~~Las~ 246 (713)
....+.|++++.| |=-++++|..+|.+.|.|++...++.... .....|+++.|+- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999997 66799999999999999998877665421 1234688888862 22 358889
Q ss_pred ECCCeEEEEEcC--C-Cee----EEEEccCCCceEEEE-EcCCC--------------------CEEEEEeCCCcEEEEE
Q 005123 247 SDDTTVKVWDFA--R-CQE----ERSLTGHGWDVKSVD-WHPTK--------------------SLLVSGGKDSLVKLWD 298 (713)
Q Consensus 247 s~Dg~I~iwDl~--~-~~~----~~~l~~h~~~V~sl~-~spdg--------------------~~L~sgs~Dg~I~IwD 298 (713)
++.|.+.+|.+. . +.. ......+.+.|..|. ++.+. .-+++...+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 111 112223556666555 32221 1234444568899999
Q ss_pred CCCCceEEEEccCCCCeEEEEEc-----CCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWN-----QNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fs-----pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
.-+.+...+..........+++- ..+..|++-..+|.|++|.+-..+.+..+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 98888776655332333344452 35677888899999999999999988877754
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00056 Score=72.18 Aligned_cols=255 Identities=11% Similarity=0.057 Sum_probs=157.3
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeccCC-------
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAHK------- 228 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~~~~~~~~~~~~~------- 228 (713)
+.|+|+|..+++.+-.+.. +-.-.+..++|++.+++++ +.-.|.+||..+-.....+..-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999988777764 2333467899999888643 34579999999886655443221
Q ss_pred CCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCce
Q 005123 229 ESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAK-SGRE 304 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~-t~~~ 304 (713)
.....+.++.|++++++... -.+|.|.|+...+.+.++.... |....| .++.|.+-|.||.+....+. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 12345678889988877543 4579999999988888776332 222223 23468888899999999887 4555
Q ss_pred EEEE----ccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCee--EEEeecCC----------CCeEEEEEeCCCC
Q 005123 305 LCSF----HGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHR----------KDVTALAWHPFHE 367 (713)
Q Consensus 305 ~~~~----~~h~~-~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~--l~~~~~h~----------~~V~sl~fsp~~~ 367 (713)
..+. ...+. .+..-.++.++..++..+.+|.|+-.|+..... ...+..-. +.-.-+++++..+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 4322 11122 223445555666666678899999998875432 12222110 1123466776444
Q ss_pred CEEEEEE--C-----CC--cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EE-E-E-eCCcEEEEecCCC
Q 005123 368 EYFVSGS--L-----DG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LL-C-S-NDHTTKFWCRNRP 428 (713)
Q Consensus 368 ~~lasgs--~-----DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l-a-S-~Dg~v~iWd~~~~ 428 (713)
++++.-. . |+ .|.++|+.+.+.+.++... ..+.+|.++.+.. +| + + .++.+.|||....
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4444321 1 22 4777788777766666543 4588999998873 33 3 3 5789999998654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.6e-06 Score=91.40 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=120.6
Q ss_pred EEEEEccCCCEEEEEEC----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 148 NRVLWTPTGRRLITGSQ----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
+-++|+|..-++|+++. .|.|.||- ++++..+... -.-.++++||+|..-.|+.|-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34579999988888764 58888884 3343222111 122356799999988899999999999999988887777
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--ccCC--C--ceEEEEEcCCCC------EEEEEeCC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHG--W--DVKSVDWHPTKS------LLVSGGKD 291 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~--~--~V~sl~~spdg~------~L~sgs~D 291 (713)
...|...|..+.||++|..++++..-|.|.+|.+.....+... -.|+ . ...|..+++++. ..++.+++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 7889999999999999999999999999999987532222211 1121 1 234445555532 23344444
Q ss_pred CcEE-EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 292 SLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 292 g~I~-IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
..+. .++.+.....+... + .=.++|..|+.++.+|+|+-.|-.
T Consensus 177 ~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCC
Confidence 4443 33332111111111 0 113578888888899998888754
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.4e-05 Score=80.99 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=140.5
Q ss_pred ccCCCEEEEE---------eCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 195 SHNDNWMVSG---------DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 195 spdg~~L~sg---------s~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
|+|+++++.. +..+.+.|||+++++....... ...+....|||+++.|+... ++.|.++++.+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 4677766653 2246789999999876655433 67899999999999998886 56899999877744332
Q ss_pred EccC-----------------CCceEEEEEcCCCCEEEEEeCCC------------------------------------
Q 005123 266 LTGH-----------------GWDVKSVDWHPTKSLLVSGGKDS------------------------------------ 292 (713)
Q Consensus 266 l~~h-----------------~~~V~sl~~spdg~~L~sgs~Dg------------------------------------ 292 (713)
-... -+.-..+-|+||+++|+....|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2111 12235788999999888764321
Q ss_pred cEEEEECCCCceEEE--E---ccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEeec-CCCC---eE
Q 005123 293 LVKLWDAKSGRELCS--F---HGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-HRKD---VT 358 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~--~---~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~~-h~~~---V~ 358 (713)
.|.|+|+++++.... . ......+..+.|+++++.|++...++ .+.++|..+++....+.. .... ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 134456655543211 1 12345688899999988555443332 577788877654333321 2222 23
Q ss_pred EEEEe-CCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE-EEEcCCCcEE--EE-e--CCcEEEEecCCC
Q 005123 359 ALAWH-PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLL--CS-N--DHTTKFWCRNRP 428 (713)
Q Consensus 359 sl~fs-p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~~l--aS-~--Dg~v~iWd~~~~ 428 (713)
.+.|. +++..+|.....||.-+||-++........+....-.|.. +.|+.++..| .+ . -..-.||.++..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55554 6567777777788987777665555555555555566755 6778876444 22 2 346677777665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00055 Score=68.38 Aligned_cols=189 Identities=13% Similarity=0.005 Sum_probs=117.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
..+++.|+..+.+.-.|..+++.+-+... ...|.+-+.- -|++++.|+..|.+++.+.+++.....+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 34677888888888888888876544322 2333333332 478899999999999999999977666544332222334
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccCCC
Q 005123 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKN 313 (713)
Q Consensus 236 fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~ 313 (713)
...++..|..++.|++.+..|.++...+.+.+.......+-++.+-...|.++...|.|.--..+... .+.... ..+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~ 179 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFG 179 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCC
Confidence 55688999999999999999999988888776555555555666633345555555665555544431 111111 112
Q ss_pred CeEE--EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 314 MVLC--VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 314 ~I~s--i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.|.+ ++ -+..+..++-||.+.-+| ..++.+..+.
T Consensus 180 PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 180 PIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 2211 11 134455556666666666 4455555443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.5e-05 Score=83.86 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=123.1
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE---eCC-CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG---DDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 168 V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg---s~D-G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
+.+-|.+ +.....+......+..-+|++++..++.. ... ..+.++++++++...... ....-..-+|++||++|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3444443 44455555556677788999999876633 222 358999999887655543 34445567899999887
Q ss_pred EEEE-CCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CSCS-DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as~s-~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+.+. .|+ .|++.|+..+.. ..+....+.-..=.|+|||++|+..+.. | .|.++|++.... ..+......-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 7654 455 466778776653 3355444444477899999988887653 3 377778776554 333222232337
Q ss_pred EEEcCCCCEEEEEECC-Ce--EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 318 VKWNQNGNWVLTASKD-QI--IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 318 i~fspdg~~Latgs~D-g~--I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
-.||+||++|+..+.+ |. |.+.|+.++..+..+. .......-.|.+ +++.|+.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~-ng~~i~~ 386 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAP-NGRMIMF 386 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC-CCceEEE
Confidence 8899999999977643 43 7777776665433332 233333445666 4444443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00043 Score=72.42 Aligned_cols=220 Identities=12% Similarity=0.100 Sum_probs=131.0
Q ss_pred cCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee---------
Q 005123 154 PTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--------- 223 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~--------- 223 (713)
..++.|+.|+.+| |++|+... .+...... ...|..+...++-+.|++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999998 99999833 33333332 33399999998878777665 49999999876543331
Q ss_pred -----eccCCCCeeEEE--EecCCCEEEEEECCCeEEEEEcCCC-----eeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 224 -----KSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 224 -----~~~~~~~V~~l~--fs~dg~~Las~s~Dg~I~iwDl~~~-----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.......+..++ -...+...+++...++|.+|..... +..+++. ....+.+++|. ++.|++|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111223344444 1123333333444558888887542 3445554 44789999999 6678888754
Q ss_pred CcEEEEECCCCceEEEEccCC------------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeE
Q 005123 292 SLVKLWDAKSGRELCSFHGHK------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVT 358 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~------------~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~ 358 (713)
...+.|+.++.....+.... ..+..+.++ ++++|++- |..-.+.|.. |+..+ ..-.+.....
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSSAPQ 232 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-CCcCcccEEEcCCchh
Confidence 48899999766544332111 223333443 45555543 3344444543 44433 2223555677
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
++++.. .+|++.+.+ .|.||++.++..
T Consensus 233 ~~~~~~---pyli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 233 SVAYSS---PYLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred EEEEEC---CEEEEECCC-EEEEEECcCCcE
Confidence 777743 466665554 599999988754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00064 Score=77.88 Aligned_cols=189 Identities=10% Similarity=0.056 Sum_probs=119.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEE---E-------EEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIR---S-------MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~---s-------l~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+.+|++++.++.|+-+|..+++.+-++.... ..+. + +++ .+..|++++.|+.|..+|.++++++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577778888889999999988776654321 1111 1 222 2456778888999999999999987765
Q ss_pred ccCCC----CeeEEEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCCC-----------------------
Q 005123 225 SAHKE----SVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGW----------------------- 271 (713)
Q Consensus 225 ~~~~~----~V~~l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~~----------------------- 271 (713)
..... .+++--..-++ .+++++ .+|.|..+|.++++.+-.+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 43211 12211111134 444443 268999999999988765432110
Q ss_pred --------ce-EEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCceEEEEccCCCC---------eEE
Q 005123 272 --------DV-KSVDWHPTKSLLVSGGKD-----S-----------LVKLWDAKSGRELCSFHGHKNM---------VLC 317 (713)
Q Consensus 272 --------~V-~sl~~spdg~~L~sgs~D-----g-----------~I~IwDl~t~~~~~~~~~h~~~---------I~s 317 (713)
.+ ..++++++.++|+.+..+ + .|.-.|+++|+....+...... ..-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 11 134666666667666522 2 5778899999988776542211 112
Q ss_pred EEEcCCCC---EEEEEECCCeEEEEECCCCeeE
Q 005123 318 VKWNQNGN---WVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 318 i~fspdg~---~Latgs~Dg~I~IwDl~t~~~l 347 (713)
+.+..+|+ .|+.+.++|.++++|.++++.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 23334665 7789999999999999999876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00052 Score=70.43 Aligned_cols=200 Identities=10% Similarity=0.141 Sum_probs=116.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEE-EEEECCCcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+.+.+-.+.|..|+|+++.+.| ++....+.|..++.+ ++.++.+... .+....|++.-++.++++.-+++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 45677777789999999986654 555667888888864 6777777654 36688999987777777666789999998
Q ss_pred cCCCc----e--eeee-----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---CeeEEE--E------ccCCCc
Q 005123 215 NNMNN----V--KANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERS--L------TGHGWD 272 (713)
Q Consensus 215 l~~~~----~--~~~~-----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---~~~~~~--l------~~h~~~ 272 (713)
+.... . ...+ ..++..+..|+|.+.++.|+++-+..-..||.+.. ...+.. . ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84321 1 1111 13456689999999988888887776666666643 111111 1 123456
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 273 VKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 273 V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---------~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
+.++++++. +.+++....+..|.++| .+|+.+..+.-.. ..--.|+|.++|++ ++.++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 889999995 55667777788899999 5677666553222 24678999999864 445566655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-07 Score=102.61 Aligned_cols=197 Identities=16% Similarity=0.227 Sum_probs=135.8
Q ss_pred CCCEEEEEEccCCC--EEEEEeCCCcEEEEEcCCCce--eeeeccCCCCeeEEEEecC-CCEEEEEE----CCCeEEEEE
Q 005123 186 DHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNNV--KANKSAHKESVRDLSFCRT-DLKFCSCS----DDTTVKVWD 256 (713)
Q Consensus 186 ~~~V~sl~~spdg~--~L~sgs~DG~I~vwdl~~~~~--~~~~~~~~~~V~~l~fs~d-g~~Las~s----~Dg~I~iwD 256 (713)
...+.|+++..+.+ .+++|..+|.|.+-.+....- ......+...+++++|++- .+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44577887766544 677888999999987764422 3344567788999999874 45566653 356799999
Q ss_pred cCCCe----eEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcC-CCCEEEE
Q 005123 257 FARCQ----EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLT 329 (713)
Q Consensus 257 l~~~~----~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fsp-dg~~Lat 329 (713)
+.+.- ....+.+ ......+++|..+.+++++|.....|.++|++.. .....+ ....+..+.++| ..+|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 98751 1122222 4456779999999999999999899999999832 222222 344567788888 7778776
Q ss_pred EECCCeEEEEE-CCCCeeEEEeecCC-----CCeEEEEEeCCCCCEEEEEECC-CcEEEEEcC
Q 005123 330 ASKDQIIKLYD-IRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSGSLD-GSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwD-l~t~~~l~~~~~h~-----~~V~sl~fsp~~~~~lasgs~D-G~I~Iwd~~ 385 (713)
-. |+.|.+|| .++.+.......|. ..+..++|+|....++++.+.| ++|+.+|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 65 99999999 44444322222232 2489999999766677777765 579999884
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.002 Score=71.53 Aligned_cols=190 Identities=9% Similarity=0.113 Sum_probs=106.7
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc------eeeeeccCCCCeeEEEEecCC
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------VKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~------~~~~~~~~~~~V~~l~fs~dg 240 (713)
.|+||+... +.+..+.-..+.|.++.|+.+ ..|++...||.++++|+.... .+.........+....+..+|
T Consensus 62 ~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCC-CEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 489998664 455555544589999999875 555566789999999986333 111111111222222333344
Q ss_pred CEEEEEECCCeEEEEEcCCCe-eEEEEccCCC---------ceEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 241 LKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW---------DVKS-VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~---------~V~s-l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
++.-..++.|.+.+-.... ..+.+..... .+.. ..++.+....+....++.|.+.+....+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333345555444322211 1111110000 0001 22333444445555555555444332211 11
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-CCCeEEEEEeC
Q 005123 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHP 364 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-~~~V~sl~fsp 364 (713)
..+.+..+++|+++++||.-..+|.+.|.+.+-.+.+.++... ......+.|.-
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 2467999999999999999999999999988766666666644 34567777764
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-06 Score=92.10 Aligned_cols=255 Identities=15% Similarity=0.231 Sum_probs=146.3
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee--
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-- 224 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-- 224 (713)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|...|..+.||++|..|+++..-|.|.+|..+....+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999999999999999999999988888888889999999999999999999999999999987633222211
Q ss_pred ccC--CCCee--EEEEecCCC------EEEEEECCCeEE-EEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 225 SAH--KESVR--DLSFCRTDL------KFCSCSDDTTVK-VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 225 ~~~--~~~V~--~l~fs~dg~------~Las~s~Dg~I~-iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
-.| ...++ |..++.++. ..++++++..+- .++.+.....+... + .=.++|..++.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCce
Confidence 111 22233 333344421 133344443332 33322111111111 1 11357788888899999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC----------------CCCee-----------
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI----------------RAMKE----------- 346 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl----------------~t~~~----------- 346 (713)
|+-.|-. +++....+. ++. ..+-|.+-..-|++...+-++.++-+ +.|..
T Consensus 214 Vyyvdq~-g~~~~V~k~-dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQN-GRQRTVHKL-DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCC-CcEEEEEEc-cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 9888843 444333321 111 11112221111111111111111110 00000
Q ss_pred -E---EEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC-------CceEEEe--cccCCCeEEEEEcCCCcE
Q 005123 347 -L---ESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------TPQVEIH--NVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 347 -l---~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~-------~~~~~~~--~~h~~~V~~l~~spdg~~ 412 (713)
+ ..+. .....+++++++. .+..|+.|...|++.+|.-... .....+. ....+.|+.|.|.+-...
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~ 369 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST 369 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence 0 0010 1245699999998 7888999999999999964222 1111111 123468999999985533
Q ss_pred E
Q 005123 413 L 413 (713)
Q Consensus 413 l 413 (713)
+
T Consensus 370 ~ 370 (1416)
T KOG3617|consen 370 A 370 (1416)
T ss_pred h
Confidence 3
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.2e-05 Score=84.03 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=126.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEE---CC-CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcE--
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGS---QS-GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAI-- 210 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs---~d-g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I-- 210 (713)
..+..-...+..-+|+++++.++..+ .. ..++++|+++++....+. ..+.-..-+|++||++|+ +...||..
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 34555666788889999998877553 22 359999999887666655 344455679999998877 45566654
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-CC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
.+.|+.++.... +....+.-+.=.|++||++|+..++ .| .|.+.|.+.... ..+......-..-.|++||++|+.
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 555776666443 3333333446779999999887665 34 466677766554 333333333338889999999988
Q ss_pred EeCC-Cc--EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 288 GGKD-SL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 288 gs~D-g~--I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
.+.+ |. |.+.|+.++..++.+. .......-+|.++++.|...+.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 8753 43 7777877766544443 3444556678888887775543
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00023 Score=83.45 Aligned_cols=304 Identities=16% Similarity=0.115 Sum_probs=156.4
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCc--EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE------CCCe--
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS------DDTT-- 251 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~--I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s------~Dg~-- 251 (713)
...+...+..+.|++++..++..+.++. ..+|.+.... .+..+...|....|++++..++... .|+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4446778889999999999997774332 3444333221 3344556777888888888776621 1222
Q ss_pred -----EEEEEcCCC-ee-----------EEEEccCCCceEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceEEE
Q 005123 252 -----VKVWDFARC-QE-----------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCS 307 (713)
Q Consensus 252 -----I~iwDl~~~-~~-----------~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~-------I~IwDl~t~~~~~~ 307 (713)
+.+|....+ +. ..........+....++.+++.++....+.. ..++...++ .+..
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 210 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELES 210 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEE
Confidence 334433222 11 1112223345666677766676666554432 333333233 3444
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECC-C-------eEEEEECCCCeeEEEeecCC--CCeEEEEEeCCCCCEEEEEEC-C
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKD-Q-------IIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVSGSL-D 376 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~D-g-------~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~~~lasgs~-D 376 (713)
+......+..+.|..+++.++..+.. . .+.++|.+.++....+...+ .....+.+.-++..+++++.. .
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecCC
Confidence 44456668889999999866544322 2 34444522222222111111 111111111123444444444 6
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-e--CCcEEEEecCCCCCccccccccCCcccccccceEee
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-N--DHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 452 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (713)
|...++++................|..+++..+..++. + . -..+.+|+. +...+... .........
T Consensus 291 g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~---~~~~~~~~-~~~~~~~~~------ 360 (620)
T COG1506 291 GSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR---GEEAKLTS-SNNSGLKKV------ 360 (620)
T ss_pred CceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC---CCceEEee-ccccccccc------
Confidence 77888877655544555554456677777622222222 1 2 234555544 11111100 000000000
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCcccCCC-CCCCCCCCCcccCCCCCCcccccCCCCCCCCC-CCCCCCCC
Q 005123 453 GRMPGNFPLPEGPTTPGPFAPGLTRNEG-TIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL-GAPPLPPG 520 (713)
Q Consensus 453 ~~~~~~~l~~~~~~rag~~~~glgr~~g-tv~Gy~~~~al~~~~~~~~~~~~~~~p~~~~~-g~p~~~~~ 520 (713)
..+.+-...+..++| +|+||-+. |.+++.++|||+.+.+ |||-..-+
T Consensus 361 -------------~~~~~e~~~~~~~dG~~i~~~l~~--------P~~~~~~k~yP~i~~~hGGP~~~~~ 409 (620)
T COG1506 361 -------------KLAEPEPVTYKSNDGETIHGWLYK--------PPGFDPRKKYPLIVYIHGGPSAQVG 409 (620)
T ss_pred -------------ccCCceEEEEEcCCCCEEEEEEec--------CCCCCCCCCCCEEEEeCCCCccccc
Confidence 011111111233334 99999998 9999999999999999 99976666
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00081 Score=77.08 Aligned_cols=237 Identities=8% Similarity=0.042 Sum_probs=143.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEecc--C--CCEEEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeec
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAH--D--HAIRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~--~~V~sl~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~ 225 (713)
+..|++++.|+.|.-+|.++++.+-..... . ..+++.-..-++ .|+++. .+|.|..+|.++++.+..+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 356888889999999999999887665431 1 112211111134 455443 26889999999998776543
Q ss_pred cCCC-------------------------------Ce-eEEEEecCCCEEEEEECC-----C-----------eEEEEEc
Q 005123 226 AHKE-------------------------------SV-RDLSFCRTDLKFCSCSDD-----T-----------TVKVWDF 257 (713)
Q Consensus 226 ~~~~-------------------------------~V-~~l~fs~dg~~Las~s~D-----g-----------~I~iwDl 257 (713)
.... .+ ..+++.++..+|+.+..+ + +|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 2111 11 123555555566655421 2 6778899
Q ss_pred CCCeeEEEEccCCCce---------EEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEc--c----------CC-
Q 005123 258 ARCQEERSLTGHGWDV---------KSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFH--G----------HK- 312 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V---------~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~--~----------h~- 312 (713)
++++.+-.+......+ .-+.+..+++ .++.+.++|.++++|.++++.+...+ . ..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 9998887765422222 2223334565 78899999999999999998762210 0 00
Q ss_pred -----------------CCe-----------EEEEEcCCCCEEEEEECC-------------------------------
Q 005123 313 -----------------NMV-----------LCVKWNQNGNWVLTASKD------------------------------- 333 (713)
Q Consensus 313 -----------------~~I-----------~si~fspdg~~Latgs~D------------------------------- 333 (713)
..+ ..++++|+..++++...+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 000 114556655555443322
Q ss_pred --CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec
Q 005123 334 --QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (713)
Q Consensus 334 --g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~ 395 (713)
+.|.-+|+.+++.+..+........+.... .+.+++.++.||.++.+|.++++.+.+...
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457778888888877665332222222111 355777788899999999999987776654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00048 Score=75.81 Aligned_cols=217 Identities=13% Similarity=0.112 Sum_probs=155.2
Q ss_pred ceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCcee
Q 005123 146 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVK 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~~ 221 (713)
.-..++++++++.++... .++.|.+.|..+.+.......-. .-..++++++++.++++.. ++.+.+.|..+++..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345778888888655544 45889999988777766665433 6678999999988887765 688999999888887
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEE-E---EccCCCceEEEEEcCCCCEEEEEeCC---Cc
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEER-S---LTGHGWDVKSVDWHPTKSLLVSGGKD---SL 293 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~-~---l~~h~~~V~sl~~spdg~~L~sgs~D---g~ 293 (713)
......... ..++++++++.++.+. .++.|.+.|.......+ . ...-...-..+.++++++++.+.... +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 775443334 8999999999776665 78899999977655443 1 11123345688999999977666554 48
Q ss_pred EEEEECCCCceEEEEccCCC-CeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeeEEEeecCCC---CeEEEEEeC
Q 005123 294 VKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRK---DVTALAWHP 364 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~-~I~si~fspdg~~Latgs~D-g~I~IwDl~t~~~l~~~~~h~~---~V~sl~fsp 364 (713)
+.+.|..++........-.. ....+.++|+|+++.+.... +.+.+.|..+.+....+..... .+..+++.+
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 99999998877665221122 56678999999999887544 8899999998877766554332 355555544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00053 Score=76.13 Aligned_cols=207 Identities=9% Similarity=0.089 Sum_probs=117.2
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe------eEEEEccCCCceEEEEEcCCC
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~------~~~~l~~h~~~V~sl~~spdg 282 (713)
.|.||+.... .+..+.-..+.|.++.|+.++ .|++...||+++++|+.... .+.........+..+.+..+|
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 3677765433 333333333889999998754 56666789999999986333 011111111222233333344
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eEEEEcc----------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 283 SLLVSGGKDSLVKLWDAKSGR-ELCSFHG----------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~----------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
+++-..++.|.+.+-.... ..+.+.. .........++.+....+....++.|.+.|-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333344555544322211 1111110 000000123444555555555555666444332211 11
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
..+.+..++.|| ++++||.-..+|.+.|.+.+-.+...+...........+.|..+..+++..+..|.+..
T Consensus 215 -~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 215 -SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred -CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 246799999999 89999999999999999876655555554444567789999998877777666777765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5e-05 Score=84.92 Aligned_cols=154 Identities=11% Similarity=0.202 Sum_probs=106.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-- 262 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-- 262 (713)
...|.--+++..+++|+.|+..|.|++|+-..+....... +....+..++++.++.++|+++..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3344444566678999999999999999987776554433 2445566677888888899999999999998865322
Q ss_pred ---EEEE-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 263 ---ERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 263 ---~~~l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~----~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
+... +.|...|++++|++++..|++|...|+|.+-.+++. -....+....+.|..|.+. + .+|++++.-+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q-~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-Q-SYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-c-ceehHhhhhh
Confidence 1111 236789999999999999999999999999888762 1123333456778777764 2 3444444333
Q ss_pred eEEEEECC
Q 005123 335 IIKLYDIR 342 (713)
Q Consensus 335 ~I~IwDl~ 342 (713)
..+++.+
T Consensus 191 -~~Lc~tE 197 (726)
T KOG3621|consen 191 -CILCQTE 197 (726)
T ss_pred -hheeecc
Confidence 3445554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00045 Score=75.93 Aligned_cols=237 Identities=11% Similarity=0.022 Sum_probs=134.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------------------------------------eee
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------------------------------------ANK 224 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~-------------------------------------------~~~ 224 (713)
.|+++.|+.+..-|+++...|.|.||.+..++.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5888999999899999999999999864322110 001
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--cc------CCCceEEEEEcC-----CC---CEEEEE
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TG------HGWDVKSVDWHP-----TK---SLLVSG 288 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~------h~~~V~sl~~sp-----dg---~~L~sg 288 (713)
....+.|++++.| |--++++|..+|++.|.|++....+..- .. ....|+++.|.- |+ -+|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2235778888887 5568999999999999999877766542 11 234688888863 33 378899
Q ss_pred eCCCcEEEEECC--C-CceE----EEEccCCCCeEEEE-EcCC--------------------CCEEEEEECCCeEEEEE
Q 005123 289 GKDSLVKLWDAK--S-GREL----CSFHGHKNMVLCVK-WNQN--------------------GNWVLTASKDQIIKLYD 340 (713)
Q Consensus 289 s~Dg~I~IwDl~--t-~~~~----~~~~~h~~~I~si~-fspd--------------------g~~Latgs~Dg~I~IwD 340 (713)
+..|.+.+|.+. . +... .....+.+.|..|. |+.+ -.-+++...+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999774 1 2211 11223556665554 3221 02244455577899999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEe----CCCCCEEEEEECCCcEEEEEcCCCCceEEEecc---cCCCeEEEEEcCCCcEE
Q 005123 341 IRAMKELESFRGHRKDVTALAWH----PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 341 l~t~~~l~~~~~h~~~V~sl~fs----p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~l 413 (713)
.-+.+..+...........+.+- ...+..|++-..+|.|++|.+-.-+.+...... ....+...+++.+|.++
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98887765554222223334442 125678899999999999999776555444321 12334566778888766
Q ss_pred EE-eCCcEEEEec
Q 005123 414 CS-NDHTTKFWCR 425 (713)
Q Consensus 414 aS-~Dg~v~iWd~ 425 (713)
.- ....+.+|.+
T Consensus 322 ~~~gpsE~~l~sv 334 (395)
T PF08596_consen 322 YWTGPSEIQLFSV 334 (395)
T ss_dssp EE-SSSEEEEEEE
T ss_pred EEeCcccEEEEEE
Confidence 43 5556555554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0018 Score=71.39 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=168.0
Q ss_pred ceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceee
Q 005123 146 SINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~ 222 (713)
....+.+.+++..+++... ...+.+.+.. ....... ..-...-..++.+++++.++ +...++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4566777788855554432 2245555544 2222221 11113345778888887555 44456899999988777766
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwD 298 (713)
..... ..-..++++++++.+.++.. ++++.+.|..+.+.+.....-... ..++++++++.++++. .++.|.++|
T Consensus 111 ~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 65332 36788999999988777765 689999999888887775543334 8999999999766665 688999999
Q ss_pred CCCCceEE-E---EccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCC-CeEEEEEeCCCCCEE
Q 005123 299 AKSGRELC-S---FHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYF 370 (713)
Q Consensus 299 l~t~~~~~-~---~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~-~V~sl~fsp~~~~~l 370 (713)
..+..... . ...-...-..+.++++++++.+.... +.+.+.|..++........-.. ....+.++| ++..+
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AGKAA 267 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CCCEE
Confidence 77655442 1 11122344678899999977766544 5899999998877665221222 456788899 56665
Q ss_pred EEE-ECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCC
Q 005123 371 VSG-SLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG 410 (713)
Q Consensus 371 asg-s~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg 410 (713)
.+. +..+.+.+.|..+.......... -...+..+++.+..
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 555 44578999988665544333221 11235555555443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0007 Score=69.47 Aligned_cols=198 Identities=10% Similarity=0.187 Sum_probs=115.2
Q ss_pred EEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccC-CCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 181 ILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~-~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
.+.+-...++.|+|.++.+ ++++....+.|..++.+ ++++..+... .....+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999866 55566777888888864 6666665433 4678899998888766666568999999983
Q ss_pred CCe----e--EEEEc-----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceEEEE--------ccCCCCeE
Q 005123 259 RCQ----E--ERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSF--------HGHKNMVL 316 (713)
Q Consensus 259 ~~~----~--~~~l~-----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t---~~~~~~~--------~~h~~~I~ 316 (713)
... . ...+. .+...+..|+|++.++.|+++-+..-..||.++. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 11121 2445689999999888888887776677776653 2222111 11334588
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCC---------CCeEEEEEeCCCCCEEEEEECCCcEEEE
Q 005123 317 CVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 317 si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~---------~~V~sl~fsp~~~~~lasgs~DG~I~Iw 382 (713)
++++++. +.+++....+..|.++| .+|+.+..+.... ..--.|+|.+ ++++++ .++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEE-EcCCceEEEe
Confidence 9999995 56666777888999999 5677766654333 2467899988 565444 4455555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-06 Score=58.94 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=36.2
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+++.++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57789999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.9e-06 Score=58.92 Aligned_cols=39 Identities=28% Similarity=0.739 Sum_probs=36.7
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
++++.++.+|...|++|+|++++++|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0021 Score=71.61 Aligned_cols=236 Identities=12% Similarity=0.072 Sum_probs=131.9
Q ss_pred EEEEEEccCCCEEEEE-eCCC----cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC-----------eE
Q 005123 189 IRSMVWSHNDNWMVSG-DDGG----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----------TV 252 (713)
Q Consensus 189 V~sl~~spdg~~L~sg-s~DG----~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-----------~I 252 (713)
+..+++++|+++||.+ +..| .|+|+|+++++.+..... ......+.|..+++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999998855 4444 599999999976653211 11223499999988877665433 38
Q ss_pred EEEEcCCCeeE--EEEccCCCc--eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----ceEEEEccCCCCe-EEEE
Q 005123 253 KVWDFARCQEE--RSLTGHGWD--VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG----RELCSFHGHKNMV-LCVK 319 (713)
Q Consensus 253 ~iwDl~~~~~~--~~l~~h~~~--V~sl~~spdg~~L~sgs~D----g~I~IwDl~t~----~~~~~~~~h~~~I-~si~ 319 (713)
+.|++.+.... ..+...... ...+..+.|+++|++.+.. ..|.+.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888765432 444433332 6788999999987765432 34788898875 2333333333333 3444
Q ss_pred EcCCCCEEEEEE---CCCeEEEEECCCCee---EEEeecCCC--CeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCc
Q 005123 320 WNQNGNWVLTAS---KDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 389 (713)
Q Consensus 320 fspdg~~Latgs---~Dg~I~IwDl~t~~~---l~~~~~h~~--~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~ 389 (713)
.. ++.+++... .++.|...++.+... ...+..+.. .+..+... ++.+++....++ .|+++++..+..
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcE
Confidence 43 444444443 345787888876652 224445555 35555543 456667766666 478888872333
Q ss_pred eEEEecccCCCeEEEEEcCCCc--EE-E-E--eCCcEEEEecCCC
Q 005123 390 QVEIHNVHDNTVWDLAWHPIGY--LL-C-S--NDHTTKFWCRNRP 428 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~--~l-a-S--~Dg~v~iWd~~~~ 428 (713)
...+...-.+.|..+....+.. ++ . | .-.++..||+...
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 3333333345566665555442 22 2 2 3455555555443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0005 Score=73.86 Aligned_cols=211 Identities=15% Similarity=0.216 Sum_probs=126.2
Q ss_pred CcEEEEeCCCCceEEEEecc-CCCEEEEE---EccC----CCEEEEEeC----------CCcEEEEEcCCC-----ceee
Q 005123 166 GEFTLWNGQSFNFEMILQAH-DHAIRSMV---WSHN----DNWMVSGDD----------GGAIKYWQNNMN-----NVKA 222 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h-~~~V~sl~---~spd----g~~L~sgs~----------DG~I~vwdl~~~-----~~~~ 222 (713)
..|+|.|..+.+.+..+... ...+.+++ +..+ ..+|++|.. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889998888877766543 33455443 3322 467776642 288999999884 2211
Q ss_pred -eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-eEEEE-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 223 -NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 223 -~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
......+.|++++-. ++ +|+++. ++.|.+|++...+ ....- ......+.++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 113456789888876 33 454444 5789999997776 33222 2233467777766 669999998888887754
Q ss_pred CC-CceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------C--e--eEEEeecCCCCeEEE---EE
Q 005123 300 KS-GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------M--K--ELESFRGHRKDVTAL---AW 362 (713)
Q Consensus 300 ~t-~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t-------~--~--~l~~~~~h~~~V~sl---~f 362 (713)
+. .+.+..+ .....+++++.|-.+++.++++..+|.|.++.... + + .+..+. ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence 43 2323333 22456688999886667999999999999998762 1 1 222332 33556766 43
Q ss_pred eCC--CC-----CEEEEEECCCcEEEE
Q 005123 363 HPF--HE-----EYFVSGSLDGSIFHW 382 (713)
Q Consensus 363 sp~--~~-----~~lasgs~DG~I~Iw 382 (713)
.+. +. ..++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 331 12 247788888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0011 Score=70.27 Aligned_cols=219 Identities=11% Similarity=0.085 Sum_probs=138.2
Q ss_pred EEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc--
Q 005123 150 VLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-- 226 (713)
Q Consensus 150 v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~-- 226 (713)
-.|.++...|+ +--..+.|.-||..+++.. .+. +.+.+.++....++..|+++.. -+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 35667766444 4445788899988765433 222 3344556665555566665543 356666665554222211
Q ss_pred ---CCCCeeEEEEecCCCEEEEEEC-----------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-
Q 005123 227 ---HKESVRDLSFCRTDLKFCSCSD-----------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (713)
Q Consensus 227 ---~~~~V~~l~fs~dg~~Las~s~-----------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D- 291 (713)
.....+++.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1245678888899887766544 133444443 455666666556677899999999888877654
Q ss_pred CcEEEEECCC--C----ce-EEEEccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 292 SLVKLWDAKS--G----RE-LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 292 g~I~IwDl~t--~----~~-~~~~~~h~~~I~si~fspdg~~Latgs~Dg-~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
+.|.-|++.. + +. ...+....+..-.++...+|++.+++..+| .|.+|+.+ ++.+..++.....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 6788887752 1 11 122223445666778888898876555554 89999998 99999999887889999996
Q ss_pred CCCCCE-EEEEE
Q 005123 364 PFHEEY-FVSGS 374 (713)
Q Consensus 364 p~~~~~-lasgs 374 (713)
-.+.+. ++++.
T Consensus 264 G~~~~~L~iTs~ 275 (307)
T COG3386 264 GPDLNTLYITSA 275 (307)
T ss_pred CCCcCEEEEEec
Confidence 433344 44443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=72.80 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=83.4
Q ss_pred CCCEEEEEEccCC-CEEEEE----eCCCcE----EEEEcCCCceee---eeccCCCCeeEEEEecCCCEEEEEECCCeEE
Q 005123 186 DHAIRSMVWSHND-NWMVSG----DDGGAI----KYWQNNMNNVKA---NKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253 (713)
Q Consensus 186 ~~~V~sl~~spdg-~~L~sg----s~DG~I----~vwdl~~~~~~~---~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~ 253 (713)
+....++.|+... ..+.+. +.+|.+ .+|++..++... +.......|.+++++++++.|+.|+.||+|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 3444677787633 344432 344443 456665554322 2234677899999999999999999999999
Q ss_pred EEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005123 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~ 302 (713)
+||..++..... ...-..+.++|+|+|..|++|+..|.|.+||+.-.
T Consensus 285 LyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999877643322 34566889999999999999999999999998754
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00044 Score=81.01 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=98.8
Q ss_pred CEEEEE-eCCCcEEEEEcCCCceeeeeccCCCC-eeEEEEec-----CCCEEEEEECCCeEEEEEcCCCe--eEEE---E
Q 005123 199 NWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQ--EERS---L 266 (713)
Q Consensus 199 ~~L~sg-s~DG~I~vwdl~~~~~~~~~~~~~~~-V~~l~fs~-----dg~~Las~s~Dg~I~iwDl~~~~--~~~~---l 266 (713)
+.|+.. .....|+-.|++.++++..+..+... |.+++-.. +....++|-.++.|..||.+-.. .+.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 35578999999999999998877654 55554321 12345677778899999987532 2211 1
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
........|++-+.+| +||+|+.+|.||+||--..+....+.+....|..|+.+.||+||++.+ +..|.|+|+
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234567888877666 699999999999999543333334556788999999999999998776 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0026 Score=66.50 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=125.3
Q ss_pred cCCCEEEEEeCCCcEEEEEcCC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE---------
Q 005123 196 HNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS--------- 265 (713)
Q Consensus 196 pdg~~L~sgs~DG~I~vwdl~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~--------- 265 (713)
..++.|++|+++| |.++++.. .+..... ....|..+...++-+.|++-+ |+.|+++|+........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999999 88888832 2222222 233499999998877777665 59999999865433221
Q ss_pred -----EccCCCceEEEE--EcCCC-CEEEEEeCCCcEEEEECCCC-----ceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 266 -----LTGHGWDVKSVD--WHPTK-SLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 266 -----l~~h~~~V~sl~--~spdg-~~L~sgs~Dg~I~IwDl~t~-----~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
.......+..++ -...+ ..|+++ ...+|.||..... +..+++. ....+.+++|. ++.|++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111223344444 11233 344444 4468888877652 3445554 45778999997 667888875
Q ss_pred CCeEEEEECCCCeeEEEeecCC------------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCC
Q 005123 333 DQIIKLYDIRAMKELESFRGHR------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~~h~------------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~ 400 (713)
++ ..+.|+.++.....+.... ..+..+... ++.+|++. |..-.+.|. .+.........-...
T Consensus 157 ~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 157 KG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSA 230 (275)
T ss_pred Cc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcC-CCCcCcccEEEcCCc
Confidence 54 8888998766544332111 234444443 34555543 323333343 232221111111335
Q ss_pred eEEEEEcCCCcEEEEeCCcEEEEecCCC
Q 005123 401 VWDLAWHPIGYLLCSNDHTTKFWCRNRP 428 (713)
Q Consensus 401 V~~l~~spdg~~laS~Dg~v~iWd~~~~ 428 (713)
..++++... .+++-.++.|.||++...
T Consensus 231 p~~~~~~~p-yli~~~~~~iEV~~~~~~ 257 (275)
T PF00780_consen 231 PQSVAYSSP-YLIAFSSNSIEVRSLETG 257 (275)
T ss_pred hhEEEEECC-EEEEECCCEEEEEECcCC
Confidence 666666443 444557778999999665
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.016 Score=67.67 Aligned_cols=180 Identities=14% Similarity=0.086 Sum_probs=120.4
Q ss_pred eEEEEEcCCCeeEEEEccC----CCceEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceEEEEcc--CCC
Q 005123 251 TVKVWDFARCQEERSLTGH----GWDVKSVDWHPT-KSLLVSGGK----------DSLVKLWDAKSGRELCSFHG--HKN 313 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h----~~~V~sl~~spd-g~~L~sgs~----------Dg~I~IwDl~t~~~~~~~~~--h~~ 313 (713)
.++++|-++.+.+...... ...|.++.|..| +.++++|+. .|.|.||.....+.+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3666666665544332211 124556668877 667777753 57788887766444433322 233
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--ceE
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQV 391 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--~~~ 391 (713)
.+.++..- +|++||. -+..|++|++.+.+.++.-..+...+..+...- .++.|++|..-++|.+...+..+ -..
T Consensus 831 av~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred ceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEE
Confidence 44444321 5666654 456899999999888887778888888888887 78999999998888777665444 233
Q ss_pred EEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCcccc
Q 005123 392 EIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~~~~ 434 (713)
.....+....+++.+-.+..++.+ +++.+.+-.++.......+
T Consensus 907 vArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~e 950 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEE 950 (1096)
T ss_pred eehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhh
Confidence 334456778899999888888876 8899998888765554433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0059 Score=72.34 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=107.9
Q ss_pred CCEEEEEEccCCCEEEEEeC-----CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC------CeEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDD-----GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVW 255 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~-----DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D------g~I~iw 255 (713)
-.+..+.|++|+++|+.+.. .-.|++.|+.+++.+....... -..++|++|++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999998886532 2358888998876432221111 1469999999877665442 368888
Q ss_pred EcCCC--eeEEEEccCCCceE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 256 DFARC--QEERSLTGHGWDVK-SVDWHPTKSLLVSGGK---DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 256 Dl~~~--~~~~~l~~h~~~V~-sl~~spdg~~L~sgs~---Dg~I~IwDl~--t~~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
++.+. +....+........ .+..+.++++++..+. ++.+.+|+.. +++....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 33444443333333 3344447777665543 3568888853 3332222222222222222 2233333
Q ss_pred EEEECC---CeEEEEECCCCeeEEEeecC-C-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 328 LTASKD---QIIKLYDIRAMKELESFRGH-R-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~D---g~I~IwDl~t~~~l~~~~~h-~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+....+ ..|...++.+......+..+ . ..|..+.++ .+.++++...+|.-+++-++.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcC
Confidence 333222 24544555522222333334 2 368888887 457778888888766665543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0063 Score=65.55 Aligned_cols=239 Identities=11% Similarity=0.058 Sum_probs=119.5
Q ss_pred eCCCCceEEEEeccCCCEEEE-----EEccCCCEEEE-EeCCC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 172 NGQSFNFEMILQAHDHAIRSM-----VWSHNDNWMVS-GDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 172 d~~t~~~~~~l~~h~~~V~sl-----~~spdg~~L~s-gs~DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
|-.|+..+..+.........+ +|..||+.|+. +..|| .+.+.|+.+++................++++++.|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777777776544433333 56778876665 44455 46666888888776655433334456777888888
Q ss_pred EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEc--CCCCEEEEEeC----------------------CCcEEEEEC
Q 005123 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH--PTKSLLVSGGK----------------------DSLVKLWDA 299 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s--pdg~~L~sgs~----------------------Dg~I~IwDl 299 (713)
+-...+..|+..|+++.+....+......+-...|. .|+..++-.-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 777777899999999988777776666666555653 45555433211 233666788
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCC-EEEEEEC------CCeEEEEECCCCeeEEEeecCC--CCeEEEEEeCCCCCEE
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGN-WVLTASK------DQIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYF 370 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~-~Latgs~------Dg~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~~~l 370 (713)
++|+....+. ...++..+.|||... +|+.|-+ |..|.+.|.+ +..++.+..+. ..+..=-|.+++..++
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEE
Confidence 8877655554 677899999999544 4444432 2234444443 33344443332 2344556888544444
Q ss_pred EEEE-C---CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 371 VSGS-L---DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 371 asgs-~---DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
..+. . +..|.-+|..+..... +. .......+-.++|+.++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~-~~--~~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRR-LM--EMPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEE-EE--EE-SEEEEEE-TTSSEEEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceE-EE--eCCceeeeEEcCCCCEEEe
Confidence 4333 2 3346666776654322 11 1224556677889999876
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=76.69 Aligned_cols=181 Identities=10% Similarity=0.107 Sum_probs=106.1
Q ss_pred CCeeEEEEecCCCEEEEEE------CCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC---------
Q 005123 229 ESVRDLSFCRTDLKFCSCS------DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------- 291 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s------~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------- 291 (713)
..+.+.++++|++.++... .|. .|.+++... .. ..+.. ....+.-.|+++++.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887665 243 556656532 22 33322 2348899999998888777543
Q ss_pred ---CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCCCe-eE---EEee-cCCCCeEEE
Q 005123 292 ---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL---YDIRAMK-EL---ESFR-GHRKDVTAL 360 (713)
Q Consensus 292 ---g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I---wDl~t~~-~l---~~~~-~h~~~V~sl 360 (713)
+.|.+.+++.++... .....|..+.||+||+.|+... ++.|+| -....++ .+ ..+. .....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443332222 2356799999999999998776 477777 4434443 11 1122 223346889
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEEeCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSNDH 418 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS~Dg 418 (713)
.|.. ++.++ ++..++...+|.+.-.......... ....+.+|+-+++..++...++
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCc
Confidence 9998 55544 5555665566666443333222222 2456777777765444333444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0027 Score=68.20 Aligned_cols=210 Identities=14% Similarity=0.100 Sum_probs=120.7
Q ss_pred CcEEEEEcCCCceeeeecc-CCCCeeEEEEe---cC----CCEEEEEEC----------CCeEEEEEcCCC----eeEEE
Q 005123 208 GAIKYWQNNMNNVKANKSA-HKESVRDLSFC---RT----DLKFCSCSD----------DTTVKVWDFARC----QEERS 265 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs---~d----g~~Las~s~----------Dg~I~iwDl~~~----~~~~~ 265 (713)
..|+|.|..+.+.+..+.- ..+.+++++.. .+ ..+|++|+. .|.|.++++.+. ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577888777766554432 23344544432 22 466776643 288999999884 12222
Q ss_pred E--ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 266 L--TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 266 l--~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~-~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
+ ....+.|++|+-. +.+|+++. ++.|.+|++...+ .+..- ......++++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2356789998877 34455554 4889999998877 33322 2233356666654 669999998888888754
Q ss_pred CC-CeeEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC-------C-ceEEEecc-cCCCeEEE---EE
Q 005123 342 RA-MKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T-PQVEIHNV-HDNTVWDL---AW 406 (713)
Q Consensus 342 ~t-~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~-------~-~~~~~~~~-h~~~V~~l---~~ 406 (713)
+. .+.+..+. .....++++.|-.++ +.++++..+|.|.++..... . .......- ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43 33233332 234568899988534 69999999999999988531 1 22222222 24567777 44
Q ss_pred cCC----C------cEEEEeCCcEEEE
Q 005123 407 HPI----G------YLLCSNDHTTKFW 423 (713)
Q Consensus 407 spd----g------~~laS~Dg~v~iW 423 (713)
.+. . .+.++.+|.|-+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 441 1 3335688888844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0047 Score=67.86 Aligned_cols=89 Identities=13% Similarity=0.292 Sum_probs=60.0
Q ss_pred EEEEccCCCEEEEEECCCcEEE---EeCCC-----CceEEEEec---cC--CCEEEEEEcc-----------CCCEEEEE
Q 005123 149 RVLWTPTGRRLITGSQSGEFTL---WNGQS-----FNFEMILQA---HD--HAIRSMVWSH-----------NDNWMVSG 204 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~I---wd~~t-----~~~~~~l~~---h~--~~V~sl~~sp-----------dg~~L~sg 204 (713)
+++.+++++.||.+..+..|.+ |+... ........+ ++ ..|+++.|-+ |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988877666 64311 112222211 12 4677777643 45788999
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec
Q 005123 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~ 238 (713)
..+|.|++|.. ++.++.....|.+.|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999975 5556555567788888887743
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.049 Score=57.57 Aligned_cols=270 Identities=8% Similarity=0.078 Sum_probs=122.5
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--ecc---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--~~h---~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
-...+.+|.|..+..-+|+| ..+.|.. ..+.++.-... ... .-...+|.|.. .+.+++ +..+. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCce-EEEecCC
Confidence 34478999999555555555 4554322 22222221111 111 12356777753 344444 44453 3333344
Q ss_pred Cceeeeec---cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 218 NNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
++.-..+. ........+....++ .+..++..|.|+.=. +.++. ..........+..+..++|+++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 43322221 122333444444444 333344455443321 22222 2223445577889999999998888877666
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeeEEE----eecCCCCeEEEEEeCCCCC
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI-RAMKELES----FRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl-~t~~~l~~----~~~h~~~V~sl~fsp~~~~ 368 (713)
+.-||--...-...-......|.++.|++++.+.+++ ..|.|++=|. ...+.... +..-...+..++|.+ ++.
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~ 245 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNE 245 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCC
Confidence 6677754322222222346789999999998766644 8888888872 22222221 112233489999998 566
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCC-CcEEEEeCCcEEEE
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPI-GYLLCSNDHTTKFW 423 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spd-g~~laS~Dg~v~iW 423 (713)
++++|+ .|.|. ...+.++.-.+.... -...++.|.|..+ .-++.+.||.|.-|
T Consensus 246 ~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 666555 44443 333334333333221 2345778888655 45566788888766
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0006 Score=79.90 Aligned_cols=134 Identities=10% Similarity=0.115 Sum_probs=96.5
Q ss_pred CCCcEEEEeCCCCceEEEEeccCCC-EEEEEEcc-----CCCEEEEEeCCCcEEEEEcCCCc--eeee-e--ccCCCCee
Q 005123 164 QSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSH-----NDNWMVSGDDGGAIKYWQNNMNN--VKAN-K--SAHKESVR 232 (713)
Q Consensus 164 ~dg~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~sp-----dg~~L~sgs~DG~I~vwdl~~~~--~~~~-~--~~~~~~V~ 232 (713)
....|+-.|++.++.+..+..+... |..++=.. +....++|-.+..|..||.+-.. ++.. . .......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4577889999999999999988755 66554321 13445677778899999987542 2211 1 12344567
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
|++-+.+| +||+|+.+|.||+||-........+.+....|..|+.+.||++|++.+. ..|.|+|+
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 77776555 6999999999999995433334455577899999999999999988775 66777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.022 Score=66.72 Aligned_cols=284 Identities=12% Similarity=0.125 Sum_probs=160.2
Q ss_pred CCCCCceEEEEEccCC------CEEEEEECCCcEEEEe-CCCCceEEEE--e--ccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 141 NKNRCSINRVLWTPTG------RRLITGSQSGEFTLWN-GQSFNFEMIL--Q--AHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg------~~Latgs~dg~V~Iwd-~~t~~~~~~l--~--~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
+.-...|.|++++|-+ +++++|..+..+.+.- +.+...+... . .-...|.-.+|--|..+|+++..||.
T Consensus 527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~ 606 (1096)
T KOG1897|consen 527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA 606 (1096)
T ss_pred heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence 3345789999999753 3788887766655432 3333332222 1 11344555666667889999999999
Q ss_pred EEEEEcC--CCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEE-EEcC--CC
Q 005123 210 IKYWQNN--MNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV-DWHP--TK 282 (713)
Q Consensus 210 I~vwdl~--~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl-~~sp--dg 282 (713)
+..|.++ ++...... .-...++.--.|+..++.-+.|..|+-..+|..+..-....+.- ..+..+ .|+. -.
T Consensus 607 l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 607 LLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch--HHhhhhcccccccCC
Confidence 9876544 44332222 22345666667777666666666677777776544333322221 111111 1222 23
Q ss_pred CEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEEC-----------C---CeEEEEECCCCee
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASK-----------D---QIIKLYDIRAMKE 346 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~-----------D---g~I~IwDl~t~~~ 346 (713)
..|+++.. +.+++.-++.-.. ++++. -......+++.+....+++.+. . ..++++|-++.+.
T Consensus 685 d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 44555544 5677776654322 22322 2334556666653333333321 1 1477888877766
Q ss_pred EEEeecCC----CCeEEEEEeCCCCCEEEEEEC----------CCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCC
Q 005123 347 LESFRGHR----KDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIG 410 (713)
Q Consensus 347 l~~~~~h~----~~V~sl~fsp~~~~~lasgs~----------DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg 410 (713)
+...+... ..|.++.|..+.+.++++|.. .|.|.||.+.+... ++.... -.+.|.++.. -+|
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fng 840 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNG 840 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCC
Confidence 55433211 245666788855778877753 57888888876332 222211 1344444432 367
Q ss_pred cEEEEeCCcEEEEecCCCCC
Q 005123 411 YLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 411 ~~laS~Dg~v~iWd~~~~~~ 430 (713)
+++|+-...|++|++...++
T Consensus 841 kllA~In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWTTERE 860 (1096)
T ss_pred eEEEecCcEEEEEEccccce
Confidence 89999999999999977644
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.017 Score=68.39 Aligned_cols=239 Identities=10% Similarity=0.025 Sum_probs=123.3
Q ss_pred CceEEEEEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC------CcEEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------GAIKYW 213 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D------G~I~vw 213 (713)
-.+..+.|++|+++|+.+.. .-.|++.|+.+++.+...... .-..++|++|++.|+.+..+ ..|.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45778899999999887643 235888899887633222111 11469999999877655432 357777
Q ss_pred EcCCC--ceeeeeccCCCCee-EEEEecCCCEEEEEEC---CCeEEEEEcC--CCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 214 QNNMN--NVKANKSAHKESVR-DLSFCRTDLKFCSCSD---DTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 214 dl~~~--~~~~~~~~~~~~V~-~l~fs~dg~~Las~s~---Dg~I~iwDl~--~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. +++....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 33333333333333 3344557777665443 4578888853 3332222222222222222 2223333
Q ss_pred EEEeCC---CcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEE--EECCCCeeEEEee-cCCCCe
Q 005123 286 VSGGKD---SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKL--YDIRAMKELESFR-GHRKDV 357 (713)
Q Consensus 286 ~sgs~D---g~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~Dg~I~I--wDl~t~~~l~~~~-~h~~~V 357 (713)
+....+ ..|...++.+......+..+ ...|..+.++ .+.++++...++.-++ +|+.+. .+..+. .....+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~ 361 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYV 361 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceE
Confidence 333222 23444455521222233333 3468888887 3345556666775444 454432 333333 222223
Q ss_pred EEEEEe--CCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 358 TALAWH--PFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 358 ~sl~fs--p~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
..+.++ .+++.++++.++ -+.|+.+|+.++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 333344 323445555544 3568888876643
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.013 Score=62.32 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=126.2
Q ss_pred EEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--
Q 005123 192 MVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-- 268 (713)
Q Consensus 192 l~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-- 268 (713)
-.|.++.+.|+ +--..+.|.-|+..+++.... .....+.++....++..|+++.. .+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 35666666444 444567888888876654332 23344455555555556666543 367777765554333321
Q ss_pred ---CCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-
Q 005123 269 ---HGWDVKSVDWHPTKSLLVSGGK-----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 333 (713)
Q Consensus 269 ---h~~~V~sl~~spdg~~L~sgs~-----------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D- 333 (713)
.....+.+.+.++|.+.+.... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 2245678889999886655433 123444443 466666666556667889999999888877654
Q ss_pred CeEEEEECCC--C----ee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCC-cEEEEEcCCCCceEEEecccCCCeEEEE
Q 005123 334 QIIKLYDIRA--M----KE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (713)
Q Consensus 334 g~I~IwDl~t--~----~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG-~I~Iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (713)
+.|.-|++.. + +. ...+....+..-.++... ++++.+++..+| .|.+|+-+ ++ ++.........+++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GK-LLGEIKLPVKRPTNPA 261 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-Cc-EEEEEECCCCCCccce
Confidence 7788887752 1 11 122222345555666666 677776555554 89999986 44 4444444557788888
Q ss_pred EcC
Q 005123 406 WHP 408 (713)
Q Consensus 406 ~sp 408 (713)
|-.
T Consensus 262 FgG 264 (307)
T COG3386 262 FGG 264 (307)
T ss_pred EeC
Confidence 876
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0018 Score=74.83 Aligned_cols=214 Identities=8% Similarity=0.023 Sum_probs=109.1
Q ss_pred cEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeccCCCCeeEEEEecC
Q 005123 167 EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~D------G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d 239 (713)
.+..||..+.+....-...... -.+++. -++..+++|+.+ ..+..||..++.-...-.-...........-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 5778887776543221111111 112222 266777777753 34677887766432211111111111122236
Q ss_pred CCEEEEEECCC-----eEEEEEcCCCeeEE--EEccCCCceEEEEEcCCCCEEEEEeCCC--------------------
Q 005123 240 DLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------- 292 (713)
Q Consensus 240 g~~Las~s~Dg-----~I~iwDl~~~~~~~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg-------------------- 292 (713)
++..+.|+.++ +|.+||..+.+-.. .+.........+.+ ++++.++|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 77777777653 48889987653221 11111112222333 477777777542
Q ss_pred ---cEEEEECCCCceE--EEEccCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCC---CeeEEEeecCCCCeE
Q 005123 293 ---LVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRA---MKELESFRGHRKDVT 358 (713)
Q Consensus 293 ---~I~IwDl~t~~~~--~~~~~h~~~I~si~fspdg~~Latgs~D------g~I~IwDl~t---~~~l~~~~~h~~~V~ 358 (713)
.|..||.++.+-. ..+.........++ -++++.++|+.+ ..|..||..+ ++.+..+........
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 4777887765432 11111111111222 256777777654 2467899875 344444443333333
Q ss_pred EEEEeCCCCCEEEEEECCC--cEEEEEcCCCC
Q 005123 359 ALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 388 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~ 388 (713)
.+.+ ++.++++|+.|+ .+..||..+++
T Consensus 508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 4443 688999999888 67777776554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.012 Score=60.33 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=119.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~ 263 (713)
.-...+.|..++.++-+.+.-| .|+.+|+.+++......-.. .--..++.. +++.+...=.++...+||.++.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3456788876777777877766 68899999998765543322 222344444 3333444456889999999999888
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.++.- ...=..++ .|++.|+.+.....|+++|.++.+.++++.-. -..++.+.|- +|...|-.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88763 34555666 35777777777788999999988877766432 2246667775 6777776777788999
Q ss_pred EECCCCeeEEEeec------------C---CCCeEEEEEeCCCCCEEEEEE
Q 005123 339 YDIRAMKELESFRG------------H---RKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 339 wDl~t~~~l~~~~~------------h---~~~V~sl~fsp~~~~~lasgs 374 (713)
.|..+|+.+..+.. . ..-.+.|||++..+++++||-
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 99999998776531 1 245789999996677777763
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0073 Score=59.78 Aligned_cols=213 Identities=9% Similarity=0.045 Sum_probs=119.4
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC--CEEE-EEeCCCcEEEEEcC--CCceeeeec-----cC
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMV-SGDDGGAIKYWQNN--MNNVKANKS-----AH 227 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg--~~L~-sgs~DG~I~vwdl~--~~~~~~~~~-----~~ 227 (713)
++.+--..+.|.-||....+..+. +.....+.++.+--.+ ..++ .++..-.|.-||.. .-.+..++. ..
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 444444567788899876543322 2112223333332222 2233 33333334446632 222333211 12
Q ss_pred CCCeeEEEEecCCCEEEEEEC---------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 005123 228 KESVRDLSFCRTDLKFCSCSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLW 297 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~Las~s~---------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~Iw 297 (713)
+.+.++-..+|+|++++-.-. .|.++.|-... .+..+...-.--+.++|+.+.+.+... +.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 456677778899998543322 24455554322 222222233345678999877765544 456667778
Q ss_pred E--CCCCc-----eEEEEccC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 298 D--AKSGR-----ELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 298 D--l~t~~-----~~~~~~~h----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
| ..+|. .+..++.. .-.-..+++..+|++.+++...++|..+|..+++.+.+++.....|++++|--.+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 7 44443 33333321 1112334556688988999999999999999999999999999999999996422
Q ss_pred CCEEEEE
Q 005123 367 EEYFVSG 373 (713)
Q Consensus 367 ~~~lasg 373 (713)
-.++++.
T Consensus 266 ~d~~yvT 272 (310)
T KOG4499|consen 266 LDILYVT 272 (310)
T ss_pred ccEEEEE
Confidence 2444433
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0062 Score=62.47 Aligned_cols=169 Identities=7% Similarity=0.077 Sum_probs=115.8
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~ 260 (713)
+.+-+..|+++.|+++.+.|++......-.||=...|+++.++.. .-..-..|.+..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345566699999999999999988888888887778888777632 2334566788888887777777888888877554
Q ss_pred eeEEEE----------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE---EccC-------CCCeEEEEE
Q 005123 261 QEERSL----------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS---FHGH-------KNMVLCVKW 320 (713)
Q Consensus 261 ~~~~~l----------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~---~~~h-------~~~I~si~f 320 (713)
..+..+ .........++|++....|+++-+-.-+.||.+........ ...+ -..|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322211 11255678999999999999888877788877653331111 1111 234777888
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 321 NQ-NGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 321 sp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
++ .+.+|+.+.+++.|.-.|++ ++.+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 87 46667777788888888876 44444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0026 Score=73.64 Aligned_cols=183 Identities=15% Similarity=0.183 Sum_probs=106.2
Q ss_pred CceEEEEEccCCCEEEEEE------CCC--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---------
Q 005123 145 CSINRVLWTPTGRRLITGS------QSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 207 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs------~dg--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------- 207 (713)
..|.+.++++||+.+|... .|. .|.+++... .. ..+.. ....++-.|++||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4688999999999988765 243 455556432 22 33322 2348889999998877776533
Q ss_pred ---CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEE---EEcCCCee-E---EEEcc-CCCceEEE
Q 005123 208 ---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV---WDFARCQE-E---RSLTG-HGWDVKSV 276 (713)
Q Consensus 208 ---G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i---wDl~~~~~-~---~~l~~-h~~~V~sl 276 (713)
+.+.+.+++.++... .....|..+.|++||..|+... ++.|++ -....++. + ..+.. ....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443333322 3356799999999999988776 477777 44344431 1 11222 23346889
Q ss_pred EEcCCCCEEEEEeCCCcEEEE--ECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 277 DWHPTKSLLVSGGKDSLVKLW--DAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~Iw--Dl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.|..++.++ ++..++...+| ++.... ...+.. ....+..|+-++ ..|++...++.+.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 999988854 55555544445 444222 212122 244566666654 24556666664443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=59.51 Aligned_cols=234 Identities=12% Similarity=0.072 Sum_probs=143.4
Q ss_pred EEEEEEccCCC-EEEEEeCCCc-EEEEEcCCCceeeeeccCCCC--eeEEEEecCCCEEEEEECC-----CeEEEEEcCC
Q 005123 189 IRSMVWSHNDN-WMVSGDDGGA-IKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFCSCSDD-----TTVKVWDFAR 259 (713)
Q Consensus 189 V~sl~~spdg~-~L~sgs~DG~-I~vwdl~~~~~~~~~~~~~~~--V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~ 259 (713)
...|+|+|... -++.+-.-|+ ..++|.+......++...+.. .-.=.|++||.+|+..-+| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34567777543 4455555554 467888777655554332221 1223689999998876543 6899999874
Q ss_pred C-eeEEEEccCCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceEEEEc----cCCCCeE
Q 005123 260 C-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMVL 316 (713)
Q Consensus 260 ~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~------------------Dg~I~IwDl~t~~~~~~~~----~h~~~I~ 316 (713)
+ ..+.++..|.-.-..+.|..||+.|+++.. .-.+.+.|..+++.+.+.. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3 456677778878889999999999888642 1124455655665554332 2345678
Q ss_pred EEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEeec-------CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 317 CVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~~-------h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.++...||..++.+-..| --.|=-.+.++.+.-+.. ....|-+|+.+.+++-+.+|.-..+...|||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 888888887665443222 111111223344433321 23457888888744444444444556889999
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.++..+.... -..+..++-...++.+.|.+|.+.+++.
T Consensus 310 ~tG~vv~~a~---l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 310 ATGAVVSEAA---LPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CCCcEEeccc---ccccccceeccCceEEecCCceEEeccc
Confidence 8876433322 2345566777888888889999999854
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.044 Score=59.62 Aligned_cols=199 Identities=12% Similarity=0.162 Sum_probs=99.1
Q ss_pred CceEEEEEc-----------cCCCEEEEEE-CCCcEEEEeCCC----CceEEEEec---cC----CCEEEEEEccCCCEE
Q 005123 145 CSINRVLWT-----------PTGRRLITGS-QSGEFTLWNGQS----FNFEMILQA---HD----HAIRSMVWSHNDNWM 201 (713)
Q Consensus 145 ~~V~~v~~s-----------pdg~~Latgs-~dg~V~Iwd~~t----~~~~~~l~~---h~----~~V~sl~~spdg~~L 201 (713)
+++...-|+ .+.++|++.+ .++.|+|+|+.+ -++.+++.. +. ..-..+...++|+.+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 566666665 2456777776 678999999874 344555543 11 222344455688888
Q ss_pred EEE--eCC----CcEEEEEcCCCceeeeeccCC---CCeeEEEEecCCCEEEEEEC--------------------CCeE
Q 005123 202 VSG--DDG----GAIKYWQNNMNNVKANKSAHK---ESVRDLSFCRTDLKFCSCSD--------------------DTTV 252 (713)
Q Consensus 202 ~sg--s~D----G~I~vwdl~~~~~~~~~~~~~---~~V~~l~fs~dg~~Las~s~--------------------Dg~I 252 (713)
+++ +.+ |-+.++|-++.+++....... ..-.++.|.+..+.++++.. ..+|
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 875 222 567888888777776654422 23467778888888887643 3579
Q ss_pred EEEEcCCCeeEEEEccCC--CceEEEEEcCC--CCE-EEEEeCCCcEEEEEC-CCCc----eEEEEcc-----C------
Q 005123 253 KVWDFARCQEERSLTGHG--WDVKSVDWHPT--KSL-LVSGGKDSLVKLWDA-KSGR----ELCSFHG-----H------ 311 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~--~~V~sl~~spd--g~~-L~sgs~Dg~I~IwDl-~t~~----~~~~~~~-----h------ 311 (713)
.+||+.+.+.+.++.--. .....|.|..+ ..+ ++.+...++|..|-- +.++ .+..+.. .
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 999999999998887443 24667777654 333 333334455555533 3332 2222211 0
Q ss_pred ------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 005123 312 ------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 343 (713)
Q Consensus 312 ------~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t 343 (713)
..-|+.|.+|.|.++|++++ .+|.|+.||+..
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 24579999999999998766 689999999975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.064 Score=55.06 Aligned_cols=183 Identities=6% Similarity=0.006 Sum_probs=119.9
Q ss_pred CCceEEEEEccCCCEEEEEECCC--cEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg--~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
..-.-.+.|..++.++-+.+.-| .|+.+|+.+++......... ---..|+.. ++++....-.++...+||.++.+.
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 33455677777787777776655 68999999998876655332 122334443 445555677889999999999888
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-----CCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----GWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-----~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+.++.- ...=+.|+ .|++.|+.++...+|+++|-++.+.++.+... -..++.+.|. +|...|-.-....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 877644 34455666 47788888888889999999887776665432 2357778887 566666666777899
Q ss_pred EEECCCCceEEEEcc---------------CCCCeEEEEEcCCCCEEEEEE
Q 005123 296 LWDAKSGRELCSFHG---------------HKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 296 IwDl~t~~~~~~~~~---------------h~~~I~si~fspdg~~Latgs 331 (713)
..|..+|+.+..+.. ...-.+.|+|.++.+.|++.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999998876631 134589999998766665554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=59.18 Aligned_cols=232 Identities=11% Similarity=0.113 Sum_probs=139.7
Q ss_pred EEEEEccCCC-EEEEEECCCc-EEEEeCCCCceEEEEeccCCC--EEEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q 005123 148 NRVLWTPTGR-RLITGSQSGE-FTLWNGQSFNFEMILQAHDHA--IRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 218 (713)
Q Consensus 148 ~~v~~spdg~-~Latgs~dg~-V~Iwd~~t~~~~~~l~~h~~~--V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~ 218 (713)
..|+|+|... -++.+-.-|+ ..++|..+.....++...++. --.=.||+||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3567777643 4556655555 568888877666555432221 1123699999999976443 78999998854
Q ss_pred -ceeeeeccCCCCeeEEEEecCCCEEEEEECC------------------CeEEEEEcCCCeeEEEEc----cCCCceEE
Q 005123 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------------TTVKVWDFARCQEERSLT----GHGWDVKS 275 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D------------------g~I~iwDl~~~~~~~~l~----~h~~~V~s 275 (713)
..+.++..|.-.-..+.|..||+.++.+... -++.+.|..+++.+.+.. .+...|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 3455666777777889999999998887431 123334434444332221 23456888
Q ss_pred EEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q 005123 276 VDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR 342 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~-----I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~ 342 (713)
++...|+..++.+-..|- -.+=-.+.++.+.-+. .....|-+|+.+.+..+++..+ ..+...|||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 888888875554433221 1111122333333322 2345688888887767776555 45578899999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++..+.....- .+..++- ...-|++.+.+|.|.++.-
T Consensus 311 tG~vv~~a~l~--daaGva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 311 TGAVVSEAALP--DAAGVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CCcEEeccccc--cccccee---ccCceEEecCCceEEeccc
Confidence 99887654322 2233333 2334666677888887743
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.042 Score=58.10 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=109.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ee
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VK 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-~~ 221 (713)
..++|.|..+ +.++ ++..+. .+...+.++.-..+. .-......+....++..++ ++..|.|..= .+.++ -.
T Consensus 63 ~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWI-VGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEE-EEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEE-EcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 4677777643 3344 444553 333333333322222 1223344444444443333 4444554332 22222 22
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-C
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA-K 300 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl-~ 300 (713)
.........+.++..++|+++++++.....+.-||--...-...-+.....|.++.|.+++.+.+++ ..|.|++=|. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 2234455778899999999998888777777788854322222233356789999999997765544 8888888772 2
Q ss_pred CCceEEE----EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEE
Q 005123 301 SGRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 301 t~~~~~~----~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasg 373 (713)
..+.... +......+..++|.++++..++|+ .|. .+...+.++.-...+ .-...++.|.|.. . +.-.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~l 292 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVL 292 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEE
Confidence 2222111 111233488999998877777655 443 344555555444433 3346788999986 3 344445
Q ss_pred ECCCcEEEE
Q 005123 374 SLDGSIFHW 382 (713)
Q Consensus 374 s~DG~I~Iw 382 (713)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 678877655
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00059 Score=79.77 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCce-eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 275 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~-~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~s 275 (713)
.+..++.|+..|.|-..|+..+-. ...-......|++++|+.+|+.++.|-.+|.|.+||+.+++.++.+..+..+++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788898889999888766421 1222345678999999999999999999999999999999998888877665544
Q ss_pred ---EEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 276 ---VDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 276 ---l~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 445556667788777775 4543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.015 Score=59.65 Aligned_cols=199 Identities=10% Similarity=0.136 Sum_probs=131.2
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
.+....|.++.|+++.+.|++..+...-.||=..+++.++++.-. -.....|++..++.++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445566999999999999999988888888877788888876422 2345678888888877777778888888776543
Q ss_pred eEEEE----------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee---EEEeecC-------CCCeEEEEEe
Q 005123 304 ELCSF----------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGH-------RKDVTALAWH 363 (713)
Q Consensus 304 ~~~~~----------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~---l~~~~~h-------~~~V~sl~fs 363 (713)
.+..+ ...+.....++|++....|+++-+..=+.||.+..... +.....+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 32211 11245678899999888888888877788877653321 1111111 2357888999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCC-ceEEEecccC------CCeEEEEEcCCC-cEEEEeCCcEEEE
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGHET-PQVEIHNVHD------NTVWDLAWHPIG-YLLCSNDHTTKFW 423 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~~~-~~~~~~~~h~------~~V~~l~~spdg-~~laS~Dg~v~iW 423 (713)
+..+.+|+-+.+++.|.-.|....- ..+.+..+.. -....|+...+| .+++|+-+-.+.+
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceec
Confidence 8778888888888888888874432 1112221111 123456666666 4456655554444
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.5e-05 Score=72.79 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=84.9
Q ss_pred EEEEEECCCeEEEEEcCCCeeEEEE-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE-EEEccCCCCeEE-E
Q 005123 242 KFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLC-V 318 (713)
Q Consensus 242 ~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~-~~~~~h~~~I~s-i 318 (713)
.|...+.|+.|+-++++..+....- ..+...-.-+ .-+..+++|+.+|.|++|........ ..+......|.+ |
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3555677888888887654322111 1111111112 23567999999999999987632111 111111222333 2
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCCCCCEEEEE--ECCCcEEEEEcCC
Q 005123 319 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSG--SLDGSIFHWLVGH 386 (713)
Q Consensus 319 ~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~~~~~lasg--s~DG~I~Iwd~~~ 386 (713)
.--.++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+. .+++|+.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 233356788899999999999999888888777777 4455444444 45566666 6666777777643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.17 Score=54.65 Aligned_cols=271 Identities=8% Similarity=0.061 Sum_probs=129.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEE-e-CCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLW-N-GQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iw-d-~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
-...+.+|+|..+.+-+|+|. +|.|..= | -++.+.... +......+.++.|.. +..+++ +..+.|..- .+.++
T Consensus 44 ~~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-G~~g~i~~S-~DgG~ 119 (334)
T PRK13684 44 TEANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIV-GQPSLLLHT-TDGGK 119 (334)
T ss_pred CCCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEe-CCCceEEEE-CCCCC
Confidence 355789999986666566664 4544332 2 111221110 101233477788863 334444 444543332 12222
Q ss_pred eeeeec---cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 220 VKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 220 ~~~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
.-..+. ........+....++.. ..++..|.|..=+ +.++.-.. .......+.++.+.+++.+++++. .|.+.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~-~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~ 196 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTA-EMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFY 196 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcc-eeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEE
Confidence 211111 11112222222222322 3334444443322 11222111 122345788999999876665554 46544
Q ss_pred E-EECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----CCCeEEEEEeCCCCCE
Q 005123 296 L-WDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEY 369 (713)
Q Consensus 296 I-wDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----~~~V~sl~fsp~~~~~ 369 (713)
. +| ..++.-. ........++++.+.++++.++++ ..|.+++=+.+.++.-...... ...+.++.+.+ ++.+
T Consensus 197 ~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~ 273 (334)
T PRK13684 197 STWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEI 273 (334)
T ss_pred EEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCE
Confidence 3 22 2222222 222345678999999998877665 5676654334444433222211 23578888887 5555
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
+ .++.+|.|.. ..+.+..-.... ..-....+.+.|..++..++ +..|.|..|+-
T Consensus 274 ~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 274 W-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred E-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 4 4556776643 333332222211 11123577777776665554 57788888753
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.15 Score=52.41 Aligned_cols=195 Identities=8% Similarity=0.013 Sum_probs=121.6
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe---
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--- 261 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--- 261 (713)
-.+.+..+.++ +++.+.+..+.-++|.|+.+...-..+......-..-.|.-.|+++.++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 35566777885 5678888888889999998765433332222111223334468899998877778889986543
Q ss_pred eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
....+......-..++++ |++-..+..|+-+.|.|+.+......+ ......+.++..+++..+++.. +--+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 233444444555677777 888888889999999999865432222 1123367888887665555544 3347788
Q ss_pred ECCCCeeEEEeecC-CCC---eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 340 DIRAMKELESFRGH-RKD---VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 340 Dl~t~~~l~~~~~h-~~~---V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|..+.+....+... ... ++.+.. .+++......+.-+-+-|+++..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence 88766644433221 122 333333 45666666777777778876544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.037 Score=60.70 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=80.1
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEEcCCC--c--eeeeeccCCCCeeEEEEecCCCEEEEEECCC
Q 005123 187 HAIRSMVWSHNDNWMVSGD-----------DGG-AIKYWQNNMN--N--VKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs-----------~DG-~I~vwdl~~~--~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg 250 (713)
.....|+|.++|+++++.. ..+ .|.+++-.++ + ....+.......+.+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456788988888777653 223 6777754322 2 222333334456889998888 44444444
Q ss_pred eEEEEEcCCC-----eeEEE---Ecc----CCCceEEEEEcCCCCEEEEEeCC-------------------CcEEEEEC
Q 005123 251 TVKVWDFARC-----QEERS---LTG----HGWDVKSVDWHPTKSLLVSGGKD-------------------SLVKLWDA 299 (713)
Q Consensus 251 ~I~iwDl~~~-----~~~~~---l~~----h~~~V~sl~~spdg~~L~sgs~D-------------------g~I~IwDl 299 (713)
.+++.|.... +.... +.. +......++|.+||.+.++.+.. +.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454211 22112 221 12447789999999876654421 34555666
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
++++.. .+.........++|+++|+++++-..
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 554432 23222334578999999988776443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0036 Score=68.40 Aligned_cols=143 Identities=12% Similarity=0.143 Sum_probs=99.7
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE-------EEEEECCCeEEEEEcCCCe--eEEEE
Q 005123 197 NDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFARCQ--EERSL 266 (713)
Q Consensus 197 dg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~-------Las~s~Dg~I~iwDl~~~~--~~~~l 266 (713)
+.++|+ ++.....|+-.|++.++++...+.+.. |+-+.+.++.+. -+.|-.|..|.-||.+-.. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 445544 455567788889999999998877666 777777776532 2456668889999986322 22222
Q ss_pred cc----CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 267 TG----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 267 ~~----h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.. ......|++-..+| +||+|+.+|.|++||--..+....+.+....|..|..+.||++|++.+ +.+|.+.|+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22 23456677766555 799999999999999733333445677888999999999999988665 5567777654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.029 Score=66.70 Aligned_cols=194 Identities=12% Similarity=0.113 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCCC--------CeeEEEEec----------------CCCEEEEEECCCeEE
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--------SVRDLSFCR----------------TDLKFCSCSDDTTVK 253 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~--------~V~~l~fs~----------------dg~~Las~s~Dg~I~ 253 (713)
+..|++++.++.|.-.|.++++.+..+..... .++.+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56777778788888889888887776543221 122333321 234788888999999
Q ss_pred EEEcCCCeeEEEEccCCCceE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceEEEE
Q 005123 254 VWDFARCQEERSLTGHGWDVK-------------SVDWHP--TKSLLVSGGK----------DSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~V~-------------sl~~sp--dg~~L~sgs~----------Dg~I~IwDl~t~~~~~~~ 308 (713)
-.|.++++.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|+++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 11110 111112 2446666643 688999999999998776
Q ss_pred ccC---------CCC--------e-EEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeeEEEeec
Q 005123 309 HGH---------KNM--------V-LCVKWNQNGNWVLTASK------------------DQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 309 ~~h---------~~~--------I-~si~fspdg~~Latgs~------------------Dg~I~IwDl~t~~~l~~~~~ 352 (713)
..- .+. + ..+++.++..+++.+.. .+.|.-.|++|++.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 000 1 22344444444444221 23566778888888777754
Q ss_pred CCCCeEE---------EEEeCCCC---CEEEEEECCCcEEEEEcCCCCceEE
Q 005123 353 HRKDVTA---------LAWHPFHE---EYFVSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 353 h~~~V~s---------l~fsp~~~---~~lasgs~DG~I~Iwd~~~~~~~~~ 392 (713)
....+.+ +.+...++ ..++.++.+|.++++|-++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 2211111 11211123 2788888888899998887765443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.007 Score=70.02 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=119.8
Q ss_pred ccCCCEEEEEECC------CcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q 005123 153 TPTGRRLITGSQS------GEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNN 219 (713)
Q Consensus 153 spdg~~Latgs~d------g~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl~~~~ 219 (713)
+..+.++++|+.+ ..|..||..+........- ......+++.. ++.+.++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345667777776 3577888877644333222 22223344444 56778888888 346677776665
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCCeeEE--EEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~~~~~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
-...-.-.......-...-+|...++|+.|| +|..||.++.+-.. .+......+..+.+ ++.+.++|+.|+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 3221111111111111122778888888886 47777776543221 11111222223333 477778887554
Q ss_pred ------cEEEEECCCCceEE--EEccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCee--EEEeecCCCCe
Q 005123 293 ------LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKE--LESFRGHRKDV 357 (713)
Q Consensus 293 ------~I~IwDl~t~~~~~--~~~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~--l~~~~~h~~~V 357 (713)
++..||..+.+-.. .+...........+ ++.++++|+.|+ +|..||..+.+- +.........+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 47788887754332 22222222222233 677788888776 377788776443 32223233333
Q ss_pred EEEEEeCCCCCEEEEEECCCc-----EEEEEcC
Q 005123 358 TALAWHPFHEEYFVSGSLDGS-----IFHWLVG 385 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~-----I~Iwd~~ 385 (713)
..+.+ ++.++++|+.||. |..||-.
T Consensus 517 g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 517 GVVVL---GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred cEEEE---CCEEEEEecccCccccceeEEcCCC
Confidence 33333 6788888887763 4455443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.029 Score=66.73 Aligned_cols=195 Identities=9% Similarity=0.059 Sum_probs=119.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC--------EEEEEEcc----------------CCCEEEEEeCCCcEE
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA--------IRSMVWSH----------------NDNWMVSGDDGGAIK 211 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~--------V~sl~~sp----------------dg~~L~sgs~DG~I~ 211 (713)
+..|++++.++.|+-.|..+++.+-++...... .+.+++.. .++.|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888888888776665432211 12233321 345788888999999
Q ss_pred EEEcCCCceeeeeccCCCCee-------------EEEEec--CCCEEEEEEC----------CCeEEEEEcCCCeeEEEE
Q 005123 212 YWQNNMNNVKANKSAHKESVR-------------DLSFCR--TDLKFCSCSD----------DTTVKVWDFARCQEERSL 266 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~-------------~l~fs~--dg~~Las~s~----------Dg~I~iwDl~~~~~~~~l 266 (713)
-.|.++++.+..+.. +..|. .+.-.+ .+..+++++. +|.|+-+|+++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988866532 11110 000011 1334555532 688999999999987766
Q ss_pred ccC---------CC--------ce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEcc
Q 005123 267 TGH---------GW--------DV-KSVDWHPTKSLLVSGG------------------KDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 267 ~~h---------~~--------~V-~sl~~spdg~~L~sgs------------------~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
..- .+ .+ ..++++++..+++.+. ..+.|.-.|+++|+.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 00 11 2344555444444422 134577788899988877654
Q ss_pred CCCC---------eEEEEEcC-CCC---EEEEEECCCeEEEEECCCCeeEEEee
Q 005123 311 HKNM---------VLCVKWNQ-NGN---WVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 311 h~~~---------I~si~fsp-dg~---~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.... ..-+.+.. +|+ .|+.++++|.++++|.++++.+..++
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2111 11122333 553 78899999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00056 Score=75.95 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL-CVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~-si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
...|.-+.|+|.-.+||.+..+|.|.++.++ ...+.++..++..++ +++|.+||++||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568899999999999999999999999988 778888876666666 99999999999999999999999999998887
Q ss_pred Eee-cCCCCeEEEEEeC
Q 005123 349 SFR-GHRKDVTALAWHP 364 (713)
Q Consensus 349 ~~~-~h~~~V~sl~fsp 364 (713)
.+. .-...|+++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2346688888864
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0002 Score=70.55 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-c-cCCCceEEEE
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-T-GHGWDVKSVD 277 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~-~h~~~V~sl~ 277 (713)
|...+.||.|.-+++...+....-. .+... .....-+..+++|+.+|.|++|+..-....... . ......+.|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3445567777777655433221111 11111 222334567899999999999987622111111 1 1122223333
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-CCeEEEEEcCCCCEEEEE--ECCCeEEEEECCC
Q 005123 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRA 343 (713)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~I~si~fspdg~~Latg--s~Dg~I~IwDl~t 343 (713)
...++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+..+++|+.+ +.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34466788999999999999999888777766666 444444444455555555 5566666666543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.13 Score=53.33 Aligned_cols=218 Identities=14% Similarity=0.185 Sum_probs=125.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCC-------CCceEEEEec-----cCCCEEEEEEccCCC------------EE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQ-------SFNFEMILQA-----HDHAIRSMVWSHNDN------------WM 201 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~-------t~~~~~~l~~-----h~~~V~sl~~spdg~------------~L 201 (713)
.-+.|+++|.+-+.++....+...+||.. ...++..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888887888999999986 1223333331 234577777764322 36
Q ss_pred EEEeCCCcEEEEEcCCCce-----eeeec-cCCCC-eeEEEEecC--CCEEEEE-ECCCeEEEEEcCCCeeE--EEEccC
Q 005123 202 VSGDDGGAIKYWQNNMNNV-----KANKS-AHKES-VRDLSFCRT--DLKFCSC-SDDTTVKVWDFARCQEE--RSLTGH 269 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~-----~~~~~-~~~~~-V~~l~fs~d--g~~Las~-s~Dg~I~iwDl~~~~~~--~~l~~h 269 (713)
+.+++||+|.-|.-.-+.. ...+. ..... -..+++... +.+|+.+ -..++|.|+|-.=.+.. ..+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7789999999998432211 11111 11222 345555432 4555544 45788999985322111 001100
Q ss_pred -----CC--ce---------EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcC------CCC
Q 005123 270 -----GW--DV---------KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGN 325 (713)
Q Consensus 270 -----~~--~V---------~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fsp------dg~ 325 (713)
-. .| +-..-.++.+.=+.+..-|.|.+||+. ++.++++. +.-..-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 01 111111222222233334789999976 77777774 2233455666644 467
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEeecCCC------CeEEEEEeC
Q 005123 326 WVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAWHP 364 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~------~V~sl~fsp 364 (713)
+|+---.||+|..||..+++.+..+....+ .++.|+|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 777666899999999999988877765443 356777754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.086 Score=54.16 Aligned_cols=213 Identities=12% Similarity=0.066 Sum_probs=130.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK- 345 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~- 345 (713)
..+-+..+.++ ++++..+..+.-|+|+|+.+-.....+.. ..+.-.++.. .|++..++..|.-+.++|+.+-.
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 45667788887 66788888888899999988654433322 2233344444 68899999877778889987543
Q ss_pred --eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC-CeEEEEEcCCCcEEEEeCCcEEE
Q 005123 346 --ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSNDHTTKF 422 (713)
Q Consensus 346 --~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~laS~Dg~v~i 422 (713)
....+.........++.| +++-..+..|+-+.|.|+........+-.-..+ .+.++..+++..+++..|.-+.+
T Consensus 161 P~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvli 237 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLI 237 (370)
T ss_pred ceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEE
Confidence 233344444445677764 567777788999999999876655444333334 78999999999888888888888
Q ss_pred EecCCCCCcccc-ccccCCcccc----cccceEeeecCCCCCCCCCCCCCCCCCCCCc----ccCCCCCCCCCCC
Q 005123 423 WCRNRPGDTARD-KFNMGQNQGY----GEQNAVFAGRMPGNFPLPEGPTTPGPFAPGL----TRNEGTIPGVGVA 488 (713)
Q Consensus 423 Wd~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~rag~~~~gl----gr~~gtv~Gy~~~ 488 (713)
-|.+......+. .++....... -.....+-.+.+-...+-+..+++++|+.+- |.++..+.-|+..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y 312 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNY 312 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCe
Confidence 877666533322 2222111000 0011112222222233344457778876654 5555566666554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0018 Score=75.95 Aligned_cols=101 Identities=11% Similarity=0.220 Sum_probs=75.9
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeE
Q 005123 155 TGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~ 233 (713)
.+..+++|+..|.|...|.... +....-..-.+.|++++|+.||++++.|-.+|.|.+||+..++....+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999988886642 111222233678999999999999999999999999999999988888777766555
Q ss_pred EE---EecCCCEEEEEECCCeEEEEEc
Q 005123 234 LS---FCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 234 l~---fs~dg~~Las~s~Dg~I~iwDl 257 (713)
+- +..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 4556667888877776 5554
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.017 Score=51.13 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred eeEEEEec---CC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 231 VRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 231 V~~l~fs~---dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
|++++++. |+ +.|++|++|..||+|+-+ +.+.++. ..+.|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55666543 33 679999999999999844 4566665 4467888877655 679999999999999853 3344
Q ss_pred EEccCCCCeEEEEEcC---CC-CEEEEEECCCeEEE
Q 005123 307 SFHGHKNMVLCVKWNQ---NG-NWVLTASKDQIIKL 338 (713)
Q Consensus 307 ~~~~h~~~I~si~fsp---dg-~~Latgs~Dg~I~I 338 (713)
.++ .+..++++.+.. || .-|++|-.+|.|-+
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444 334477776544 22 36889999998754
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.001 Score=73.93 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~-sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
...|..+.|+|.-.+||++..+|.|.++.+. ...+.++..+...++ +++|.+ ++++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457889999999999999999999999998 888999998888888 999999 7999999999999999999998877
Q ss_pred EEEecccCCCeEEEEEcC
Q 005123 391 VEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (713)
......-+..|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 665444567788888863
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.01 Score=70.04 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=88.6
Q ss_pred CEEEEEEccCCCEEEEE--eCCCcEEEEEcCCCceee-----ee------ccCCCCeeEEEEecCC-CEEEEEECCCeEE
Q 005123 188 AIRSMVWSHNDNWMVSG--DDGGAIKYWQNNMNNVKA-----NK------SAHKESVRDLSFCRTD-LKFCSCSDDTTVK 253 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sg--s~DG~I~vwdl~~~~~~~-----~~------~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~ 253 (713)
.|..+...+|+...++. +.+-.|.+||+++-.... -+ .....-..++.|++.= ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676655443 334478889987542211 11 1122345667777643 3356777888888
Q ss_pred EEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEE
Q 005123 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspdg~~Lat 329 (713)
+..+........-......++|++|++.|+.+++|...|++.-|... .+....+.+ ....|.+|+|-..-.+|++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88764332222112245678999999999999999999999988654 333333321 2467999999887777664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0054 Score=70.98 Aligned_cols=185 Identities=8% Similarity=0.042 Sum_probs=95.8
Q ss_pred CCCEEEEEECC------CcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 005123 155 TGRRLITGSQS------GEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGG-----AIKYWQNNMNNVK 221 (713)
Q Consensus 155 dg~~Latgs~d------g~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG-----~I~vwdl~~~~~~ 221 (713)
++..+++|+.+ ..+..||..+......-. ........+. -++++.+.|+.++ .+.+||..+++-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56667777753 347788877654322111 1111122222 2677778888754 4788888766432
Q ss_pred e--eeccCCCCeeEEEEecCCCEEEEEECC-----------------------CeEEEEEcCCCeeE--EEEccCCCceE
Q 005123 222 A--NKSAHKESVRDLSFCRTDLKFCSCSDD-----------------------TTVKVWDFARCQEE--RSLTGHGWDVK 274 (713)
Q Consensus 222 ~--~~~~~~~~V~~l~fs~dg~~Las~s~D-----------------------g~I~iwDl~~~~~~--~~l~~h~~~V~ 274 (713)
. .+.........+. -+++..+.|+.+ .+|..||.++.+-. ..+........
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111111222 266777777654 24677877654322 11211111112
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCC-Cc--eEEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCC
Q 005123 275 SVDWHPTKSLLVSGGKD------SLVKLWDAKS-GR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRA 343 (713)
Q Consensus 275 sl~~spdg~~L~sgs~D------g~I~IwDl~t-~~--~~~~~~~h~~~I~si~fspdg~~Latgs~Dg--~I~IwDl~t 343 (713)
.+.+ ++++.++|+.+ ..|..||.++ .+ .+..+.........+.+ ++++.++|+.|+ .+..||..+
T Consensus 459 ~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 459 VVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 2222 36667777654 2467899886 33 23333322333333333 788888998888 677777776
Q ss_pred CeeE
Q 005123 344 MKEL 347 (713)
Q Consensus 344 ~~~l 347 (713)
.+-.
T Consensus 535 ~~W~ 538 (557)
T PHA02713 535 YEWN 538 (557)
T ss_pred cccc
Confidence 5533
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.19 Score=55.43 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=60.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCe-EEEEEcCC-----------------CCE-EEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV-LCVKWNQN-----------------GNW-VLT 329 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I-~si~fspd-----------------g~~-Lat 329 (713)
....+.+|+.+|++++.++...-|.|.|+|+.++..++.+++..+.- .-+....+ ..+ ++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34568899999999999998888999999999998888887654421 11111111 112 334
Q ss_pred EECCCeEEEEECCCCeeEEEeec
Q 005123 330 ASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
+-.-|.|.||+++++..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 56788999999999888877654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.39 Score=52.66 Aligned_cols=192 Identities=9% Similarity=0.047 Sum_probs=110.9
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEE
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDL 234 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l 234 (713)
.++++..+|.|.-.|.++++.+-....- ...+.+-.+..+|+ |++++.++.+..+|.++++.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4566678888888888887755332221 12222223333555 7778888989999998888887776555 112222
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC---CceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEc
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~---~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+..++ .+...+.++.+...|..+++.+....... ..+..--.. ....++.+.. ++.+.-+|.++|..+...+
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 222233 34444478889998888887766544321 111111111 2334555555 5677778888887766532
Q ss_pred cC----CCCe--E-EE---EEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 310 GH----KNMV--L-CV---KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 310 ~h----~~~I--~-si---~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
.. ...+ . .+ ...-+ .-++.++.++.+...|..+++.+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 11 1111 0 11 11112 23466777888999999999999888754
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.019 Score=50.85 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=70.4
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 273 VKSVDWHP---TK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 273 V~sl~~sp---dg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
|+++++.. || +.|++|+.|..|++|+-. +.+..+. ....|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55665544 32 589999999999999754 4566665 4566888876655 679999999999999863 3344
Q ss_pred EeecCCCCeEEEEEeCCC---CCEEEEEECCCcEEE
Q 005123 349 SFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFH 381 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~---~~~lasgs~DG~I~I 381 (713)
.++ .+..++++++...+ ..-|++|-.+|.|-+
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444 33447777765422 236888888888743
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.47 Score=51.95 Aligned_cols=194 Identities=9% Similarity=0.072 Sum_probs=94.4
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCC----ceeeeecc---CC----CCeeEEEEecCCCEEEEEEC------CCeEEEEEcC
Q 005123 197 NDNWMVSGD-DGGAIKYWQNNMN----NVKANKSA---HK----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFA 258 (713)
Q Consensus 197 dg~~L~sgs-~DG~I~vwdl~~~----~~~~~~~~---~~----~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~ 258 (713)
+.++|++.+ .++.|.|+|+.+. ++.+.+.. +. ..-..+...++|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999998854 33333322 11 12223344568888887532 2468888888
Q ss_pred CCeeEEEEccCC---CceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceEEEEccCC--C
Q 005123 259 RCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--------------------DSLVKLWDAKSGRELCSFHGHK--N 313 (713)
Q Consensus 259 ~~~~~~~l~~h~---~~V~sl~~spdg~~L~sgs~--------------------Dg~I~IwDl~t~~~~~~~~~h~--~ 313 (713)
+.+.+....... ..-..+-|.+..+.+++..- ..+|.+||+.+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777766654322 23457788888888887642 3569999999999998886432 2
Q ss_pred CeEEEEEcCC--CCEEEE-EECCCeEEEEEC-CCCe----eEEEeec-----C------------CCCeEEEEEeCCCCC
Q 005123 314 MVLCVKWNQN--GNWVLT-ASKDQIIKLYDI-RAMK----ELESFRG-----H------------RKDVTALAWHPFHEE 368 (713)
Q Consensus 314 ~I~si~fspd--g~~Lat-gs~Dg~I~IwDl-~t~~----~l~~~~~-----h------------~~~V~sl~fsp~~~~ 368 (713)
....|.|..+ ..+=++ +.-..+|..|-- +.++ .+..+.. . ..-|+.|.+|-|+..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3567777654 444333 334445555533 3332 2222211 1 234799999995555
Q ss_pred EEEEEECCCcEEEEEcCCCCce
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
+.+++=.+|.|+.||+......
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 5566667999999999775543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.022 Score=62.52 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=98.9
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCE-------EEEEECCCeEEEEECCCC-e-eEEEeecCC-
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-------VLTASKDQIIKLYDIRAM-K-ELESFRGHR- 354 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~-------Latgs~Dg~I~IwDl~t~-~-~l~~~~~h~- 354 (713)
|..+.....|+-.|++.|+.+..++-+.. |+-+.+.++.+. -++|-+|..|.-||.|-. + .+.....|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556788899999999998886665 777778776432 245667888999998732 2 232233332
Q ss_pred ---CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEEecCC
Q 005123 355 ---KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFWCRNR 427 (713)
Q Consensus 355 ---~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iWd~~~ 427 (713)
....|++-. ...+||+||.+|.|++||- ........+-+-...|..|..+.+|.+| |+.+..+.+-+..-
T Consensus 428 ~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 428 STKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 234444443 5678999999999999997 5555555666677899999999999766 66888888887643
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.1 Score=54.04 Aligned_cols=145 Identities=12% Similarity=0.127 Sum_probs=91.4
Q ss_pred ceEEEEEccCCCEEEEEE---CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee
Q 005123 146 SINRVLWTPTGRRLITGS---QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVK 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs---~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd-l~~~~~~ 221 (713)
.+.+.++++|++.+|... ....|+++.... ....+. ....++.-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887666 334455554432 222221 234788889999987777777667777774 2333221
Q ss_pred e-eec--cCCCCeeEEEEecCCCEEEEEE---CCCeEEEEEcC---CC------eeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 222 A-NKS--AHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFA---RC------QEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 222 ~-~~~--~~~~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~---~~------~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
. ... .....|+++.+++||..++... .++.|.|--+. .+ ............+.+++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111 1122899999999999988766 35677776553 22 01112223356899999999988777
Q ss_pred EEeCCCc
Q 005123 287 SGGKDSL 293 (713)
Q Consensus 287 sgs~Dg~ 293 (713)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.19 Score=52.08 Aligned_cols=144 Identities=12% Similarity=0.015 Sum_probs=89.8
Q ss_pred CEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE-cCCCeeE
Q 005123 188 AIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD-FARCQEE 263 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs---~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD-l~~~~~~ 263 (713)
.+.+.++++|++.++... ....+.++.. +....... ....+..-+|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887655 2334555543 33222221 334788889999988777777677777774 2333221
Q ss_pred -EEEccC--CCceEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC--c----eEEEEccCCCCeEEEEEcCCCCEEE
Q 005123 264 -RSLTGH--GWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAK---SG--R----ELCSFHGHKNMVLCVKWNQNGNWVL 328 (713)
Q Consensus 264 -~~l~~h--~~~V~sl~~spdg~~L~sgs---~Dg~I~IwDl~---t~--~----~~~~~~~h~~~I~si~fspdg~~La 328 (713)
..+... ...|.++.+++||..++... .++.|.|--+. .+ . .+.........++.++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222211 12899999999999888776 24667666442 22 1 1112223356789999999988777
Q ss_pred EEECCC
Q 005123 329 TASKDQ 334 (713)
Q Consensus 329 tgs~Dg 334 (713)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.055 Score=62.66 Aligned_cols=184 Identities=13% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeE
Q 005123 197 NDNWMVSGDDG------GAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEE 263 (713)
Q Consensus 197 dg~~L~sgs~D------G~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~ 263 (713)
.+.++++|+.+ ..+..+|..++.-.....- ....-.++++. ++..+++|+.| .++..||..+.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 35566677666 3577888777643322211 12223334443 55777888888 35778887665422
Q ss_pred E--EEccCCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceE--EEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 005123 264 R--SLTGHGWDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 264 ~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg~-----I~IwDl~t~~~~--~~~~~h~~~I~si~fspdg~~Latgs~Dg 334 (713)
. .+...........+ +|.+.|+|+.||. |..||.++.+-. ............+.+ +|++.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 2 12222222222333 4788889988864 778888764422 212211222222223 788888888554
Q ss_pred ------eEEEEECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-----EEEEEcCCCC
Q 005123 335 ------IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-----IFHWLVGHET 388 (713)
Q Consensus 335 ------~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-----I~Iwd~~~~~ 388 (713)
++..||-.+.+- +..+..-..... ++.- ++.+++.|+.|+. |..||..+..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 577888776443 222222222222 3322 6788888888873 6677776554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=42.84 Aligned_cols=38 Identities=26% Similarity=0.598 Sum_probs=33.7
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+.+..+..|...|.+++|.++++++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.34 Score=52.36 Aligned_cols=151 Identities=9% Similarity=0.068 Sum_probs=86.1
Q ss_pred CCCeeEEEEecCCCEEEEEECCCeEEE-EEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 228 KESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 228 ~~~V~~l~fs~dg~~Las~s~Dg~I~i-wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
...+.++.+.+++.+++++ ..|.+.. +|-....-..........++++.+.++++.++++ ..|.+++=+.+.++.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4578889998887665554 4554443 2222111122223345678999999988876665 45766543344444322
Q ss_pred EEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 307 SFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 307 ~~~~----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
.... ....+..+.+.+++..++ ++.+|.|. .....++...... .-....+.+.|.. +++. +..+..|.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~i 325 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVL 325 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceE
Confidence 2211 223578889988777555 44567554 3444444433332 2223577788775 4444 456678888
Q ss_pred EEEEc
Q 005123 380 FHWLV 384 (713)
Q Consensus 380 ~Iwd~ 384 (713)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.03 Score=64.67 Aligned_cols=185 Identities=10% Similarity=0.113 Sum_probs=89.2
Q ss_pred cCCCEEEEEECCC------cEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCce
Q 005123 154 PTGRRLITGSQSG------EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNV 220 (713)
Q Consensus 154 pdg~~Latgs~dg------~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~~ 220 (713)
-++..+++|+.++ .+..||..+.+....-... ......+.+ ++++++.|+.+ ..+.+||..++.-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556667776542 5778887776553221111 111222222 67777788765 3467788776543
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCC-
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~D- 291 (713)
...-..........+..-+++.++.|+.+ ..+.+||..+.+-... +.........+.. ++++++.|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISY 448 (534)
T ss_pred eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccC
Confidence 22111111111111122356666666632 4588889876533221 1111111122222 45666666543
Q ss_pred -------CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005123 292 -------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (713)
Q Consensus 292 -------g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~ 344 (713)
..+.+||.++.+-... +.........+.+ ++++++.|+.+ ..|.+||.++.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887543221 1111111122222 66666777654 36777777654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.11 Score=51.75 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=85.6
Q ss_pred CCEEEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEE-EECCCeEEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDD---------GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWD 256 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~---------DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las-~s~Dg~I~iwD 256 (713)
...+.-..+|+|++++-.-. .|.++.|-... .+..+...-.--+.|+|+.+.+.+.. -+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 44556677889998543222 24455553321 12222223334467889887766554 45577887888
Q ss_pred --cCCC-----eeEEEEccC----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcC
Q 005123 257 --FARC-----QEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (713)
Q Consensus 257 --l~~~-----~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fsp 322 (713)
..++ +.+..++.. .-.--.++++-+|++.+++-..++|..+|..+|+.+.+++-....|+|++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3333 233333321 11123455566889999998999999999999999999998889999999954
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.96 Score=48.14 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=108.4
Q ss_pred CCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCce-----------
Q 005123 155 TGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNV----------- 220 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~----------- 220 (713)
++++|+.|+++| |++.|..+ .+..+.+ +...|+++......+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 45555554 2333333 467899999988877766544 444599998743221
Q ss_pred ----eeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCC----eeEEEE---cc-CCCceEEEEEcC--CCCEE
Q 005123 221 ----KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC----QEERSL---TG-HGWDVKSVDWHP--TKSLL 285 (713)
Q Consensus 221 ----~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~----~~~~~l---~~-h~~~V~sl~~sp--dg~~L 285 (713)
......+......+.+.... ..++++....+|.++...+. ...+.+ .. ....+..+..+. ....|
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01112233333444444322 23344445566776544221 111110 00 112233333232 24567
Q ss_pred EEEeCCCcEEEEECCC--CceEE---E--EccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE--EEeecCCC
Q 005123 286 VSGGKDSLVKLWDAKS--GRELC---S--FHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGHRK 355 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t--~~~~~---~--~~~h~-~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l--~~~~~h~~ 355 (713)
++|+..+...++++.. ..... . ..... ..+....+ .++.+|+ +.++ ...+.|....+.. ..+ ....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Ll-c~~~-~~v~Vn~~G~~~~r~~~l-~w~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLL-CYDE-FGVFVNLYGKRRSRNPIL-HWEF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEE-EECc-EEEEEeCCCCccccceEE-EcCC
Confidence 7777643344555432 11000 0 01111 23333333 3444444 4333 3455555421221 122 2555
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
...++++.. .+|++-. +..|.|+++.++..
T Consensus 245 ~p~~~~~~~---pyll~~~-~~~ievr~l~~~~l 274 (302)
T smart00036 245 MPESFAYHS---PYLLAFH-DNGIEIRSIKTGEL 274 (302)
T ss_pred cccEEEEEC---CEEEEEc-CCcEEEEECCCCce
Confidence 667777753 4555554 44699999987754
|
Unpublished observations. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.35 Score=52.25 Aligned_cols=231 Identities=13% Similarity=0.181 Sum_probs=117.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCce---EEEE----eccCCCEEEEEEccC---CCEEEEEeC-C-------
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMIL----QAHDHAIRSMVWSHN---DNWMVSGDD-G------- 207 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~---~~~l----~~h~~~V~sl~~spd---g~~L~sgs~-D------- 207 (713)
.-++|+|.|||++|+ +...|.|++++ .++.. +..+ .........++++++ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 457899999987655 56699999999 44433 2222 123466899999984 344443322 1
Q ss_pred -CcEEEEEcCCC-------cee-eeec---cCCCCeeEEEEecCCCEEEEEECCC-------------eEEEEEcCCCe-
Q 005123 208 -GAIKYWQNNMN-------NVK-ANKS---AHKESVRDLSFCRTDLKFCSCSDDT-------------TVKVWDFARCQ- 261 (713)
Q Consensus 208 -G~I~vwdl~~~-------~~~-~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg-------------~I~iwDl~~~~- 261 (713)
..|.-|.+..+ +.+ ..+. ........|.|.+|+.++++.++.+ .|.-.|....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 111 1111 1234556799999997766655432 23333322110
Q ss_pred -----------eEEEEccCCCceEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCc-------------------------
Q 005123 262 -----------EERSLTGHGWDVKSVDWHPT-KSLLVSG-GKDSLVKLWDAKSGR------------------------- 303 (713)
Q Consensus 262 -----------~~~~l~~h~~~V~sl~~spd-g~~L~sg-s~Dg~I~IwDl~t~~------------------------- 303 (713)
....+..--.....++|++. ++++++= +.|..=.|.-++.+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 00111111123568899998 5444331 122222222222111
Q ss_pred ----eEEEEccCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeeEE---E-eecCCCCeEEEEEeCCCCC
Q 005123 304 ----ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELE---S-FRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 304 ----~~~~~~~h~~~I~si~fsp-------dg~~Latgs~Dg~I~IwDl~t~~~l~---~-~~~h~~~V~sl~fsp~~~~ 368 (713)
.+..+. +...++.+.|.. ++.+|++.-..+.|...++++...+. . +......+..|++.+ ++.
T Consensus 241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~ 318 (331)
T PF07995_consen 241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGA 318 (331)
T ss_dssp TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSE
T ss_pred CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCe
Confidence 112222 234566777753 34566666666788888887553322 2 223445799999999 788
Q ss_pred EEEEEECCCcEE
Q 005123 369 YFVSGSLDGSIF 380 (713)
Q Consensus 369 ~lasgs~DG~I~ 380 (713)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0036 Score=42.16 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=33.1
Q ss_pred ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 303 ~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
+.+..+..|...|.+++|+++++++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.52 Score=51.64 Aligned_cols=142 Identities=5% Similarity=0.031 Sum_probs=81.6
Q ss_pred CceEEEEEccCCCEEEEEE-----------CCC-cEEEEeCCC--Cce--EEEEeccCCCEEEEEEccCCCEEEEEeCCC
Q 005123 145 CSINRVLWTPTGRRLITGS-----------QSG-EFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-----------~dg-~V~Iwd~~t--~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~DG 208 (713)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-...+.+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999998776653 223 677776432 332 23443334456889998887 44455444
Q ss_pred cEEEEEcCCC-----ce--e-eeecc----CCCCeeEEEEecCCCEEEEEECC-------------------CeEEEEEc
Q 005123 209 AIKYWQNNMN-----NV--K-ANKSA----HKESVRDLSFCRTDLKFCSCSDD-------------------TTVKVWDF 257 (713)
Q Consensus 209 ~I~vwdl~~~-----~~--~-~~~~~----~~~~V~~l~fs~dg~~Las~s~D-------------------g~I~iwDl 257 (713)
.+++.|.+.. +. + ..+.. +......++|.+|+.+.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 11 1 11211 13447789999999876654421 34555565
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
.+.+... +.........++|+++++++++-.
T Consensus 172 dg~~~e~-~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRV-VAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEE-EecCcCCCccceECCCCCEEEEcc
Confidence 5544332 322234567899999998876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.4 Score=48.34 Aligned_cols=220 Identities=12% Similarity=-0.012 Sum_probs=119.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCC--CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceE
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHK--ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVK 274 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~--~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~ 274 (713)
+..++++..+|.|.-.|.+++..+....... ..+.+-.+..+|+ |++++.++.++.+|.++++.+....... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 3455566788888888888888654333221 2333333333555 7788888899999998898887776555 1122
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC---CCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEE
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELES 349 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~ 349 (713)
.-.+..++ .+..++.++.+...|..+++.+....... ..+..-... ....++.++. ++.+.-+|.+++..+..
T Consensus 147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeee
Confidence 22222233 44444478999999999888876654322 111111111 2334555555 56777788888877665
Q ss_pred eecCC----CCeEEE-EEeC---CCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE---eCC
Q 005123 350 FRGHR----KDVTAL-AWHP---FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS---NDH 418 (713)
Q Consensus 350 ~~~h~----~~V~sl-~fsp---~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS---~Dg 418 (713)
.+.+. ..+... .+.. ..+.-++.++.++.+...|..++....+.... ........+++. .||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~-------~~~~~~~~~~~~~~~~dG 297 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG-------GSVQGSGLYTTPVAGADG 297 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc-------cEeccCCeeEEeecCCCc
Confidence 43211 111001 1100 01122356666777777777766655444331 111222233332 477
Q ss_pred cEEEEecCC
Q 005123 419 TTKFWCRNR 427 (713)
Q Consensus 419 ~v~iWd~~~ 427 (713)
.+.++....
T Consensus 298 ~v~~~~~~~ 306 (370)
T COG1520 298 KVYIGFTDN 306 (370)
T ss_pred cEEEEEecc
Confidence 777775433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.21 Score=59.18 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
..|..|.++++|++|+..+..|.+ |..+.. ......+......|.|-.+ .+... ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~-------------------~v~~~--~~- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTV-------------------PVDER--FF- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEE-------------------Eechh--hc-
Confidence 468889999999999988876544 433321 1111112222223322222 22111 10
Q ss_pred EccCCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 005123 266 LTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 266 l~~h~~~V~sl~~spd---g~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
.......|..+.|+|. +..|++-+.|++|++||+....
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123457889999985 5788899999999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.5 Score=48.51 Aligned_cols=143 Identities=8% Similarity=0.124 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----- 345 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~----- 345 (713)
...+..++++.+++++.....++-||- +.. ...-......++++.|..++.+++++ .+|.|.+ ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 444566677777666654333333442 221 11122335568999999998877665 5565443 333333
Q ss_pred eEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe---cccCCCeEEEEEcCCCcEE-EEeCCc
Q 005123 346 ELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLL-CSNDHT 419 (713)
Q Consensus 346 ~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~l-aS~Dg~ 419 (713)
....... -...++++.|.. ++. ++.++.+|.|.+..- .++ ..... ..-...++.+.|..++... .+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D-~G~-tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTD-GGK-SWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCC-CCc-ceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 2222221 123588899886 445 555567777766542 222 22222 1223568899987766555 457887
Q ss_pred EEEE
Q 005123 420 TKFW 423 (713)
Q Consensus 420 v~iW 423 (713)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=2.1 Score=49.12 Aligned_cols=248 Identities=13% Similarity=0.178 Sum_probs=125.1
Q ss_pred ccCCCEEEEEECCCcEEEEeCCCCc--eEEEEecc-CCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC--ceeeeecc
Q 005123 153 TPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAH-DHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN--NVKANKSA 226 (713)
Q Consensus 153 spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h-~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~--~~~~~~~~ 226 (713)
..++.+++.+..+|.++...+.... .....-+. ....+++++..++ .+|++|++-|.=.++.+... +++..+ .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence 4567889999999999988765533 11222222 4455677776554 47888877665444444432 333333 3
Q ss_pred CCCCeeEEEEecC----CC------EEEEEE---CCCeEEEEEcCCCee--EEEEccC--CCceEEEEEcC-CCCEEEEE
Q 005123 227 HKESVRDLSFCRT----DL------KFCSCS---DDTTVKVWDFARCQE--ERSLTGH--GWDVKSVDWHP-TKSLLVSG 288 (713)
Q Consensus 227 ~~~~V~~l~fs~d----g~------~Las~s---~Dg~I~iwDl~~~~~--~~~l~~h--~~~V~sl~~sp-dg~~L~sg 288 (713)
.-+.|.++++... .. .|++++ .+|++++..-.-+-. ....... -..++.+.... ++.+|+.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4567888888532 22 566665 367888875321111 1111111 22344444332 24577776
Q ss_pred eCCCcEEEEECC---CCceEEEE-----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-CCCeEE
Q 005123 289 GKDSLVKLWDAK---SGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTA 359 (713)
Q Consensus 289 s~Dg~I~IwDl~---t~~~~~~~-----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-~~~V~s 359 (713)
..+.+ +++.+. ..+.+..+ ......+.+-.+. +..++=.+.+ .|++.|....+....+... ...|.+
T Consensus 378 ~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 378 FPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp ESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SE
T ss_pred cCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 66544 444443 33443222 1112233333333 4555555544 4889998877777665433 344555
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc----cCCCeEEEEEcC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV----HDNTVWDLAWHP 408 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~----h~~~V~~l~~sp 408 (713)
.+. ++.+++.+-.++.+.++.++........... ....|.|+...|
T Consensus 454 a~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASI---NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEE---SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEE---CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 555 3466777777889999988666543333211 367788887765
|
... |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.076 Score=61.26 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=86.8
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeE
Q 005123 197 NDNWMVSGDDGG------AIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEE 263 (713)
Q Consensus 197 dg~~L~sgs~DG------~I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~ 263 (713)
++..++.|+.++ .+..||..+++....-.. .......+ .-++..++.|+.+ ..+.+||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556667776542 467778776654322111 11112222 2266677777765 35777887665322
Q ss_pred E--EEccCCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 264 R--SLTGHGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 264 ~--~l~~h~~~V~sl~~spdg~~L~sgs~D------g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
. .+.........+. -++++++.|+.+ ..+..||..+.+-... +....... +++ .-+++++++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCcc
Confidence 1 1111111112222 246677777632 3588899876543221 11111111 222 2256666666543
Q ss_pred --------CeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 334 --------QIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 334 --------g~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
..+.+||..+.+-. ..+.........+.+ ++.+++.|+.+ ..|.+||.++.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 23888998765432 212111111122222 46666776654 35666666443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.9 Score=47.81 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=138.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc-----eEEEEeccCCCEEEEEEcc----CC-CEEEEEeCCCcEEEEEcCCC--c---
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSH----ND-NWMVSGDDGGAIKYWQNNMN--N--- 219 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~~~V~sl~~sp----dg-~~L~sgs~DG~I~vwdl~~~--~--- 219 (713)
+.+.|++|+.+|.++||+-.... ++.+ ..-+..|..|..-. .. ..||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999865433 1111 22356777776532 22 34444 45677888876311 1
Q ss_pred ----eeeeeccCCC--CeeEEEEec-----CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE
Q 005123 220 ----VKANKSAHKE--SVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 220 ----~~~~~~~~~~--~V~~l~fs~-----dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg 288 (713)
.+.....|.- ....+++-+ ....|++-+.||.+.+++-+.....+.+.. .---..+.+.+.-+.|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1112222222 222333322 236788999999999999766544444432 2234467788877889999
Q ss_pred eCCCcEEEEECCC---C-----------------ceE---EEEccCCCC---eEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 289 GKDSLVKLWDAKS---G-----------------REL---CSFHGHKNM---VLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 289 s~Dg~I~IwDl~t---~-----------------~~~---~~~~~h~~~---I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
+.+..|..|.... . +.+ .++. -... |..+.++.....|++-+ .+.+.+.+..
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~ 270 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN 270 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC
Confidence 8888888885421 0 100 0111 1112 22333333333344443 3456666653
Q ss_pred CCeeEEEeecCCCCeEEE-EE------eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC----CCc
Q 005123 343 AMKELESFRGHRKDVTAL-AW------HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP----IGY 411 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl-~f------sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp----dg~ 411 (713)
|+.....+. +..-.++ .| .+.....++.++.++++.||.- ..++........+| +|.... +|.
T Consensus 271 -G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d---~~L~WsA~l~~~PV-al~v~~~~~~~G~ 344 (418)
T PF14727_consen 271 -GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED---TTLVWSAQLPHVPV-ALSVANFNGLKGL 344 (418)
T ss_pred -CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC---CeEEEecCCCCCCE-EEEecccCCCCce
Confidence 544333332 2221221 11 1111235888899999999853 22222221112222 333332 444
Q ss_pred EEE-EeCCcEEEEecCCCCC
Q 005123 412 LLC-SNDHTTKFWCRNRPGD 430 (713)
Q Consensus 412 ~la-S~Dg~v~iWd~~~~~~ 430 (713)
+++ +.||.+.+--+...-.
T Consensus 345 IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEEcCCCcEEEEEeCCCCc
Confidence 443 4788888887755443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.19 Score=56.35 Aligned_cols=148 Identities=19% Similarity=0.333 Sum_probs=91.0
Q ss_pred CCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC----CCEEEEEECCCeEEEEEcC-
Q 005123 187 HAIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----DLKFCSCSDDTTVKVWDFA- 258 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs---~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d----g~~Las~s~Dg~I~iwDl~- 258 (713)
..|..++|. ||+.++... .+|.+++=|. ++ .+.-+.|..++|.+- .-.|++.-....|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467889998 676655432 3444443221 22 233467889999874 3346666677899999984
Q ss_pred ----CCeeEEEEccCC---C--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEccCCCCeEEEEEcCCCCEEE
Q 005123 259 ----RCQEERSLTGHG---W--DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVL 328 (713)
Q Consensus 259 ----~~~~~~~l~~h~---~--~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~-~~~~~~~h~~~I~si~fspdg~~La 328 (713)
+++.+.....+- - --..+.|+|....|++-.....-.+++++... .++.-....+.|.|.+|..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 222222211111 1 12357899998888877766555666765432 2222224677899999999998887
Q ss_pred EEEC-CCeEEEEECC
Q 005123 329 TASK-DQIIKLYDIR 342 (713)
Q Consensus 329 tgs~-Dg~I~IwDl~ 342 (713)
++-. .=.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 6543 3357888854
|
|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.9 Score=52.15 Aligned_cols=253 Identities=9% Similarity=0.020 Sum_probs=133.8
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCce---------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc---CCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNF---------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN---NMN 218 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~---------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl---~~~ 218 (713)
++-++...+++-+.+|.|+.-++.+... ...++. .+.+..+......+.|+..+..|.+..... ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455678889999999999886544321 111122 234444444445666666666787766543 221
Q ss_pred ------cee---eeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCC-------eeEEEEccCCCceEEEEEcC
Q 005123 219 ------NVK---ANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 219 ------~~~---~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~-------~~~~~l~~h~~~V~sl~~sp 280 (713)
..+ ..+.....-|..+.+.. ++.+++..+.+|.++-.++... .....+.. .+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~ 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTD 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeC
Confidence 111 11222223344444442 5678999999999988776432 22223332 34454444444
Q ss_pred CCCEEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCC------
Q 005123 281 TKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLC-VKWNQNGNWVLTASKDQIIKLYDIRAM------ 344 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~s-i~fspdg~~Latgs~Dg~I~IwDl~t~------ 344 (713)
....|+..+..|.+..+.+.. |.....+.. ...|.+ +.+..++.+|+..+..|.++..++...
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~ 729 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG 729 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC
Confidence 556677777788877776532 122222322 233444 344444447888889998888765321
Q ss_pred -eeEEE--eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 345 -KELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 345 -~~l~~--~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
+-+.. +....+.+..+.... ++..++..+.+|.+..+++..- .........|..+.+..+..
T Consensus 730 ~kG~~~lkl~~~~d~lv~v~~v~-~~~~v~i~T~~G~~lrf~~~eI----~~~gR~a~GVk~I~L~~~D~ 794 (805)
T PRK05560 730 GKGVITIKITEKNGKLVGALPVD-DDDEIMLITDSGKLIRTRVSEI----SITGRNTQGVRLIRLDEGDK 794 (805)
T ss_pred CCcEEeeeccCCCCeEEEEEEec-CCCeEEEEecCCeEEEEEHHHC----CccccCCCCeeeEecCCCCE
Confidence 11222 222233444443333 3445666677788777776421 11111233455566554443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.51 Score=50.94 Aligned_cols=231 Identities=16% Similarity=0.173 Sum_probs=115.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeee----ccCCCCeeEEEEecC---CCEEEEEEC-C-------
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANK----SAHKESVRDLSFCRT---DLKFCSCSD-D------- 249 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~---~~~~----~~~~~~V~~l~fs~d---g~~Las~s~-D------- 249 (713)
.-++|+|.+|+++|+ +...|.|++++ ..+.. +..+ .........++++++ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987766 46699999999 33332 2222 223456789999984 334433332 1
Q ss_pred -CeEEEEEcCCC-------eeEE-EEcc---CCCceEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCce
Q 005123 250 -TTVKVWDFARC-------QEER-SLTG---HGWDVKSVDWHPTKSLLVSGGKDSL-------------VKLWDAKSGRE 304 (713)
Q Consensus 250 -g~I~iwDl~~~-------~~~~-~l~~---h~~~V~sl~~spdg~~L~sgs~Dg~-------------I~IwDl~t~~~ 304 (713)
..|.-|.+... +.+. .+.. .......|+|.+|+.+.++.+..+. |.-.|.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444544333 1111 1111 2345677999999977666654332 2222322 110
Q ss_pred -------------EEEE-ccCCCCeEEEEEcCC-CCEEEEE-ECCCeEEEEECCCCe-----------------------
Q 005123 305 -------------LCSF-HGHKNMVLCVKWNQN-GNWVLTA-SKDQIIKLYDIRAMK----------------------- 345 (713)
Q Consensus 305 -------------~~~~-~~h~~~I~si~fspd-g~~Latg-s~Dg~I~IwDl~t~~----------------------- 345 (713)
...+ .++ .....++|++. |+++++- +.|..=.|.-++.+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0011 111 22457899997 6655432 222222222222111
Q ss_pred ------eEEEeecCCCCeEEEEEeCC------CCCEEEEEECCCcEEEEEcCCCCceE---EEecccCCCeEEEEEcCCC
Q 005123 346 ------ELESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 346 ------~l~~~~~h~~~V~sl~fsp~------~~~~lasgs~DG~I~Iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg 410 (713)
.+..+. +...++.+.|... .+.+|++.-..+.|...+++...... .+.......+.+|++.+||
T Consensus 239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 122233 3355777777642 33466666556788888876453322 2233344589999999999
Q ss_pred cEEEEeCCcEEEE
Q 005123 411 YLLCSNDHTTKFW 423 (713)
Q Consensus 411 ~~laS~Dg~v~iW 423 (713)
.+.++.|..-+||
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 7777755444444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.023 Score=67.27 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=89.9
Q ss_pred CeeEEEEecCCCEEEEE--ECCCeEEEEEcCCCeeEE-----------EEccCCCceEEEEEcCCC-CEEEEEeCCCcEE
Q 005123 230 SVRDLSFCRTDLKFCSC--SDDTTVKVWDFARCQEER-----------SLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVK 295 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~--s~Dg~I~iwDl~~~~~~~-----------~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~ 295 (713)
.|..+....|....++. +++-.|..||+++..... +......-..++.|+|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676554443 334478999997543221 111123346688888842 3466677889998
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC----CCCeEEEEEeCCCCCEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h----~~~V~sl~fsp~~~~~la 371 (713)
+..+........--......+|++|++.|+.+++|...|++.-|.-. ++....+.+. ...|.+|+|-. ...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~-t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS-TQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec-ceeEEE
Confidence 88776433332222355678999999999999999999999888754 4443333221 36799999986 445554
Q ss_pred E
Q 005123 372 S 372 (713)
Q Consensus 372 s 372 (713)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.28 E-value=3.8 Score=49.14 Aligned_cols=100 Identities=8% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEE---eccCCCEEEEEEccCC------CEEEEEeCCCcEEEEEcCCCceeeeec-
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHND------NWMVSGDDGGAIKYWQNNMNNVKANKS- 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l---~~h~~~V~sl~~spdg------~~L~sgs~DG~I~vwdl~~~~~~~~~~- 225 (713)
.+.|+++-++|.+..+..........+ ..-+..|.|+++.++. ++++.++.|+.++++.+.-...+..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 344556666666665544322222222 2235678899988764 679999999999999888665555442
Q ss_pred -cCCCCeeEEEEec---CC------CEEEEEECCCeEEEE
Q 005123 226 -AHKESVRDLSFCR---TD------LKFCSCSDDTTVKVW 255 (713)
Q Consensus 226 -~~~~~V~~l~fs~---dg------~~Las~s~Dg~I~iw 255 (713)
+....+.++.+-. ++ -+|.+|-.+|.+.-+
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3344444444432 22 235566666654433
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=2.3 Score=50.13 Aligned_cols=282 Identities=14% Similarity=0.148 Sum_probs=141.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCc----EEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe------CCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGE----FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD------DGG 208 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~----V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs------~DG 208 (713)
....+...+.++.|+++++.++..+.++. +++.+.. + .+..+...|....|+++++.++... .++
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDG 128 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCC
Confidence 45567788999999999999998874332 3344443 2 3444566788889999988777621 122
Q ss_pred c-------EEEEEcCCC-c-----------eeeeeccCCCCeeEEEEecCCCEEEEEECCCe-------EEEEEcCCCee
Q 005123 209 A-------IKYWQNNMN-N-----------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------VKVWDFARCQE 262 (713)
Q Consensus 209 ~-------I~vwdl~~~-~-----------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~-------I~iwDl~~~~~ 262 (713)
. +.+|....+ + ...........+....++.+++.++....+.. ..+++. ....
T Consensus 129 ~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (620)
T COG1506 129 GDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGE 207 (620)
T ss_pred ceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCc
Confidence 2 334433222 1 11122233445666666666676665544332 233333 2334
Q ss_pred EEEEccCCCceEEEEEcCCCCEEEEEeCC-C-------cEEEEECCCCceEEEEccCC--CCeEEEEEc-CCCCEEEEEE
Q 005123 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S-------LVKLWDAKSGRELCSFHGHK--NMVLCVKWN-QNGNWVLTAS 331 (713)
Q Consensus 263 ~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g-------~I~IwDl~t~~~~~~~~~h~--~~I~si~fs-pdg~~Latgs 331 (713)
+..+......+..+.|.++++.++..+.. . .+.++|.+.++....+...+ .....+.+. .++..++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (620)
T COG1506 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIAT 287 (620)
T ss_pred eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEe
Confidence 44445555668889999998855544332 2 24444522232222111111 011111111 2233333444
Q ss_pred C-CCeEEEEECCCCee-EEEeecCCCCeEEEEEeCCCCCEEEEEECCC---cEEEEEcCCCCceEEEecccCCCeEEEEE
Q 005123 332 K-DQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG---SIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (713)
Q Consensus 332 ~-Dg~I~IwDl~t~~~-l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (713)
. .+...++++..... ...+......|..+.+ +++.++++.+... .|.+++. .............+....+
T Consensus 288 ~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~---~~~~~~~~~~~~~~~~~~~ 362 (620)
T COG1506 288 DGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR---GEEAKLTSSNNSGLKKVKL 362 (620)
T ss_pred cCCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC---CCceEEeeccccccccccc
Confidence 3 56777776653222 2333434455666665 2445555544433 5777765 1122233233344444444
Q ss_pred cCCCcE-EEEeCC-cEEEEecCCCCCc
Q 005123 407 HPIGYL-LCSNDH-TTKFWCRNRPGDT 431 (713)
Q Consensus 407 spdg~~-laS~Dg-~v~iWd~~~~~~~ 431 (713)
..-..+ +-+.|| +|.-|-+...+..
T Consensus 363 ~~~e~~~~~~~dG~~i~~~l~~P~~~~ 389 (620)
T COG1506 363 AEPEPVTYKSNDGETIHGWLYKPPGFD 389 (620)
T ss_pred CCceEEEEEcCCCCEEEEEEecCCCCC
Confidence 433333 234555 7777776554433
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=2.5 Score=46.78 Aligned_cols=146 Identities=8% Similarity=0.055 Sum_probs=80.1
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eE
Q 005123 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----EL 305 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~-----~~ 305 (713)
...+..++|+.+++.+.....++-||-....-...-......+.++.|..++.+++++ .+|.|. |....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3345556677666665544334445432211011122334578899999888877665 556654 3334443 22
Q ss_pred EEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 306 CSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 306 ~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
..... ....+.++.|..++..++ ++.+|.|.+.. ..++.-.... .-...++.+.|.. +++ ....+.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~-g~~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKK-GFVLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCc-eEEEeCCcEEE
Confidence 22221 223588899987776554 55677665553 4444433322 2345688999875 444 44555678776
Q ss_pred EE
Q 005123 381 HW 382 (713)
Q Consensus 381 Iw 382 (713)
.|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.12 Score=50.62 Aligned_cols=174 Identities=10% Similarity=0.088 Sum_probs=101.6
Q ss_pred CCCEEEEEeCC--CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCce
Q 005123 197 NDNWMVSGDDG--GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDV 273 (713)
Q Consensus 197 dg~~L~sgs~D--G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V 273 (713)
++.++.+.+.- ..|++||+++++.+.........+..=-...-++++. ..-.||.-.++|.++.+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 45555555433 4699999999887765543321221111111233332 33357888899998888776665 33344
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc--CC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~---~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
..++. |++.|+.++...+++.-|.++.....++.- .. ..++.+.|- ||...|-.-.+..|...|..+++.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 44543 466677776667787778776554433321 11 223444443 66666666666667777777777665
Q ss_pred Eee------------cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 349 SFR------------GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 349 ~~~------------~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.+. .+..-.+.|++.+..++++++|-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 443 23445778999886667777663
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=3.7 Score=49.59 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----eEEEEccCC----------CCeEEEEEcCCCCEEEEEECC
Q 005123 270 GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGR-----ELCSFHGHK----------NMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 270 ~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~-----~~~~~~~h~----------~~I~si~fspdg~~Latgs~D 333 (713)
.....+|+|+| +.+.||+....|...|||+.... .+....... +.-..|.|..+-+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 45678999998 55689999999999999992111 111111111 22347889888888887765
Q ss_pred CeEEEEECCCCeeEE--EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 334 QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 334 g~I~IwDl~t~~~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
..+.++|+++..... ........|..+.-++.+..+++.-.. ..|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 468999999776533 122344678999888854444443332 4677777765
|
These proteins are found in fungi. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.28 Score=56.32 Aligned_cols=211 Identities=11% Similarity=0.124 Sum_probs=110.3
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-E--ccCCCceEEEEEcCCCCE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-L--TGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l--~~h~~~V~sl~~spdg~~ 284 (713)
-.|+|+++. |.....+.-....+..+.|+.+.. |++...||+++||++........ . ......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 457777754 333333334444888999986654 66677899999999853322211 1 2223345555554445
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEEEEEc--CCC---CEEEEEE-CCCeEEEEECCCCe-eEEEeecCCCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWN--QNG---NWVLTAS-KDQIIKLYDIRAMK-ELESFRGHRKD 356 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fs--pdg---~~Latgs-~Dg~I~IwDl~t~~-~l~~~~~h~~~ 356 (713)
+++-..+|.|.+.+-.....++++.. ......+.+|. .++ ..|+-.. ..+ ..++-..+.. ....+..-...
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 34444455555443222222333321 11111112222 221 1111111 011 1111111111 12223222466
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
+..+..|+ +.++|+--..+|.|.+-+++.......+.......-..++|..+..++++.+..+.+..
T Consensus 219 ~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvg 285 (829)
T KOG2280|consen 219 VVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVG 285 (829)
T ss_pred EEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEc
Confidence 88889998 88999999999999999887666555544333344447888887777666666666553
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.99 Score=49.16 Aligned_cols=152 Identities=11% Similarity=0.174 Sum_probs=92.6
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCc---eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce----
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---- 220 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~---- 220 (713)
+.+-|. |.+.++.+...|-+.=|-.+... .+..-...++.|.+|.||+|.+.||+--.|.+|.+++....+.
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 334444 33334444444455556543321 2222233567999999999999999999999999998743322
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKLW 297 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs--~Dg~I~Iw 297 (713)
..+.+.....|..+.|+.+ .-+|..++.| +.+|.+... ..++..+.+...|+-..|+++.+.++.++ ..+++.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 1222344566899999865 4555555444 666655432 23455667788899999999877554443 34444444
Q ss_pred ECCCC
Q 005123 298 DAKSG 302 (713)
Q Consensus 298 Dl~t~ 302 (713)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 44443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0016 Score=74.81 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=109.2
Q ss_pred eeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCC--CceEEEE-----eccCCCEEEEEEcc---CCCEEEEEeCC
Q 005123 139 SLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS--FNFEMIL-----QAHDHAIRSMVWSH---NDNWMVSGDDG 207 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t--~~~~~~l-----~~h~~~V~sl~~sp---dg~~L~sgs~D 207 (713)
.+++-.+.|-.+.|-... ..++ -.-|.+.|||+.- ++....+ ......+.-|.|.+ +..++..+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 355667778888775422 2222 2236788998542 3332222 22233445555554 55777788888
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+.|++.++++... ..+..|...+++++|...|-.++.+ +++||+.|+.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~ 252 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAW 252 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEE
Confidence 9999887765544 3345587777777665433221111 4556666666
Q ss_pred EeCCCcEEEEEC-----CCCceEEEEccCC-CCeEEEEEcCC-------CC--EEEEEE-CCCeEEEEECCCCeeEEEe-
Q 005123 288 GGKDSLVKLWDA-----KSGRELCSFHGHK-NMVLCVKWNQN-------GN--WVLTAS-KDQIIKLYDIRAMKELESF- 350 (713)
Q Consensus 288 gs~Dg~I~IwDl-----~t~~~~~~~~~h~-~~I~si~fspd-------g~--~Latgs-~Dg~I~IwDl~t~~~l~~~- 350 (713)
++.||.+++|.+ +.-+++..++.|+ ..-.|.-|+.+ +. ++++++ .+..+++|....++|+..+
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~ 332 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL 332 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc
Confidence 666665554432 2233344444443 12122112211 12 233333 4567899988877776211
Q ss_pred -------ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 351 -------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 351 -------~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
..|+..|+.+.....--..+++-+.|+.|.+|.-..
T Consensus 333 ~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 333 IDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 122222322211100011234566788899996543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.5 Score=47.31 Aligned_cols=184 Identities=8% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCceEEEEecc---CC---CEEEEEEccCCCEEEEEeCC-----CcEEEEEcC
Q 005123 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQAH---DH---AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNN 216 (713)
Q Consensus 155 dg~~Latgs~d-------g~V~Iwd~~t~~~~~~l~~h---~~---~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~ 216 (713)
+++++++|+.+ ..+.+||..+.+....-... .. ....+.+ ++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34555666542 35888898776543221110 10 1222333 56677777653 357788887
Q ss_pred CCceeeeecc-----CCCCeeEEEEecCCCEEEEEECC-----------CeEEEEEcCCCeeEEEEcc------CCCceE
Q 005123 217 MNNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD-----------TTVKVWDFARCQEERSLTG------HGWDVK 274 (713)
Q Consensus 217 ~~~~~~~~~~-----~~~~V~~l~fs~dg~~Las~s~D-----------g~I~iwDl~~~~~~~~l~~------h~~~V~ 274 (713)
+.+-...-.. ........+..-+++.++.|+.+ ..|.+||.++.+=.. +.. ......
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcce
Confidence 6543221110 11111112222355666666543 247788887653221 111 111112
Q ss_pred EEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceEEEEc-c----CCCCeEEEEEcCCCCEEEEEECC---
Q 005123 275 SVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGRELCSFH-G----HKNMVLCVKWNQNGNWVLTASKD--- 333 (713)
Q Consensus 275 sl~~spdg~~L~sgs~D-------------g~I~IwDl~t~~~~~~~~-~----h~~~I~si~fspdg~~Latgs~D--- 333 (713)
.+.+ ++++++.++.+ ..|.+||+.+.+-...-. + ......++.+ ++++++.|+..
T Consensus 189 ~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~ 264 (341)
T PLN02153 189 FAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD 264 (341)
T ss_pred EEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence 2222 45665655432 458889988754332211 0 1111222223 56777777742
Q ss_pred -----------CeEEEEECCCCe
Q 005123 334 -----------QIIKLYDIRAMK 345 (713)
Q Consensus 334 -----------g~I~IwDl~t~~ 345 (713)
..|..||+.+.+
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccccEEEEEcCccE
Confidence 257788876543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.22 Score=56.60 Aligned_cols=181 Identities=12% Similarity=0.014 Sum_probs=86.3
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeec
Q 005123 155 TGRRLITGSQSG-----EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 155 dg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~D--G~I~vwdl~~~~~~~~~~ 225 (713)
++..+++|+.++ .+..||..+.+....-.-. ......+. -++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455567776543 4677887765443321111 11122222 367777777754 357788876553322111
Q ss_pred cCCCCeeEEEEecCCCEEEEEECC---CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~D---g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
-...........-+++..+.|+.+ .++..||.++.+-... +.........+.+ ++++.+.| |.+.+||.+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCC
Confidence 111111111222367777777654 3477888765432221 1111111222222 35555555 457789887
Q ss_pred CCceEE--EEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005123 301 SGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (713)
Q Consensus 301 t~~~~~--~~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~ 344 (713)
+.+-.. .+.........+.+ ++++.++|+.+ ..|.+||..+.
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 654322 12111222222222 66777777754 24556665543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.4 Score=47.86 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=110.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe----cCCCE--EEEEE-CC---CeEEEEEcC--CCeeEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC----RTDLK--FCSCS-DD---TTVKVWDFA--RCQEER 264 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs----~dg~~--Las~s-~D---g~I~iwDl~--~~~~~~ 264 (713)
...+|+....++-+.+||++...+.. +. .+.++.+.+- -+++. |++++ .+ .+|++|.+. ++. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 45678888888999999998665543 32 2344444432 13433 44444 32 479999775 332 33
Q ss_pred EEcc-------CCCceEEEEEc--C-CCC-EEEEEeCCCcEEEEECC---CC----ceEEEEccCCCCeEEEEEcCCCCE
Q 005123 265 SLTG-------HGWDVKSVDWH--P-TKS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 265 ~l~~-------h~~~V~sl~~s--p-dg~-~L~sgs~Dg~I~IwDl~---t~----~~~~~~~~h~~~I~si~fspdg~~ 326 (713)
.+.. ....+..+|+. + ++. ++++..++|.+..|.+. ++ +.+++|.. .+.+..|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3321 22346677764 3 344 66677889988877664 33 35677763 457888888888889
Q ss_pred EEEEECCCeEEEEECCC-----CeeEEEeec--CCCCeEEEEEeC--CC-CCEEEEEECCCcEEEEEcCCCC
Q 005123 327 VLTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHP--FH-EEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t-----~~~l~~~~~--h~~~V~sl~fsp--~~-~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|+++-++.-|+-|+.+. .+.+....+ ....|-.|++-. ++ +.+|++.-.+++..||+.+...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 99999999899998862 223333322 346788887753 22 3355555567889999986543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=96.04 E-value=3.9 Score=49.49 Aligned_cols=235 Identities=12% Similarity=0.112 Sum_probs=128.0
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCce---------EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~---------~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~- 216 (713)
|..-++-++...+++-+.+|.|+-.+..+... ...++. .+.+..+......+.|+..+.+|.+...+..
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677888999999999886554321 111222 3344444444556667777777877665432
Q ss_pred --CC------cee---eeeccCCCCeeEEEEe--cCCCEEEEEECCCeEEEEEcCCCee-------EEEEccCCCceEEE
Q 005123 217 --MN------NVK---ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-------ERSLTGHGWDVKSV 276 (713)
Q Consensus 217 --~~------~~~---~~~~~~~~~V~~l~fs--~dg~~Las~s~Dg~I~iwDl~~~~~-------~~~l~~h~~~V~sl 276 (713)
.. ..+ ..+.....-|.++.+. .++.+++..+.+|.++-.++..... ...+.. .+.+..+
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v 644 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISV 644 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEE
Confidence 21 111 1122222234444432 3556899999999999988744221 122222 3445555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----
Q 005123 277 DWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---- 343 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t---- 343 (713)
........|+..+..|.+..+.+.. |.....+. ....|.++..-.++.+|+..+..|.++...+..
T Consensus 645 ~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 645 RLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 4444555677777788877665532 11122222 233455554444556788889999888876542
Q ss_pred ---CeeEEEe--ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 344 ---MKELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 344 ---~~~l~~~--~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
++-+..+ ....+.+..+.... +...++..+.+|.+..+++.
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~-~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVD-DDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEec-CCCeEEEEecCCeEEEeeHh
Confidence 1222222 22234454444444 34456666778877777653
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.88 E-value=5.9 Score=47.61 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=46.7
Q ss_pred CCCceEEEEEccCC------CEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEcc---CC------CEEEEEe
Q 005123 143 NRCSINRVLWTPTG------RRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSH---ND------NWMVSGD 205 (713)
Q Consensus 143 H~~~V~~v~~spdg------~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~sp---dg------~~L~sgs 205 (713)
-...|.|+++.++. ++++.++.|+.++++.+....++..+. +-...+.++++-. ++ -+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 34568899998875 679999999999999988666665553 3334444444432 22 2455777
Q ss_pred CCCcEEEE
Q 005123 206 DGGAIKYW 213 (713)
Q Consensus 206 ~DG~I~vw 213 (713)
.+|.+.-+
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 77765433
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.9 Score=43.72 Aligned_cols=219 Identities=14% Similarity=0.185 Sum_probs=121.6
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcC-------CCceeeeecc-----CCCCeeEEEEecCCC------------EEE
Q 005123 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNN-------MNNVKANKSA-----HKESVRDLSFCRTDL------------KFC 244 (713)
Q Consensus 189 V~sl~~spdg~~L~sgs~DG~I~vwdl~-------~~~~~~~~~~-----~~~~V~~l~fs~dg~------------~La 244 (713)
-..|+++|.+-+.++....+...+||.+ ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999988877777778899999986 1123333321 234577777764322 267
Q ss_pred EEECCCeEEEEEcCCCee-----EEEEcc-C-CCceEEEEEcC--CCCEEEEE-eCCCcEEEEECCCCceEE--EEccC-
Q 005123 245 SCSDDTTVKVWDFARCQE-----ERSLTG-H-GWDVKSVDWHP--TKSLLVSG-GKDSLVKLWDAKSGRELC--SFHGH- 311 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~~~~-----~~~l~~-h-~~~V~sl~~sp--dg~~L~sg-s~Dg~I~IwDl~t~~~~~--~~~~h- 311 (713)
.+++||+|.-|.-.-... +..+.. . ...-+.+++.. .+++|..+ -..++|.+||-.-.+... .+..-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998522111 122221 1 22234455543 34455444 457889999855322110 01100
Q ss_pred ---------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee--cCCCCeEEEEEeC-----CCCCE
Q 005123 312 ---------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHP-----FHEEY 369 (713)
Q Consensus 312 ---------------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--~h~~~V~sl~fsp-----~~~~~ 369 (713)
.-.|+-..-.++++.=+.+..-|.|-+||+. ++.++.+. +.-..-+.|+..| ..+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0001111111222222233445789999987 77777663 2223445666544 34677
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccC-----CCeEEEEEcC
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHD-----NTVWDLAWHP 408 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~-----~~V~~l~~sp 408 (713)
|+---.||+|.+||..++.-+-.+..... ..+|.|.|-.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77767799999999877664444433222 3456777754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.1 Score=47.95 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCce---eeeeccCCCCe--eEEEEecCCCEEEEEEC-----CCeEEEEEcCCCe
Q 005123 197 NDNWMVSGDDG-----GAIKYWQNNMNNV---KANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQ 261 (713)
Q Consensus 197 dg~~L~sgs~D-----G~I~vwdl~~~~~---~~~~~~~~~~V--~~l~fs~dg~~Las~s~-----Dg~I~iwDl~~~~ 261 (713)
++.+++.|+.+ ..+..+|+.+.+. ...+....... .+++. -+++.++.++. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777754 3466667666542 11111111111 12222 25566666654 2468888887653
Q ss_pred eEE--EEccCCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 005123 262 EER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGR 303 (713)
Q Consensus 262 ~~~--~l~~h~~~V~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~ 303 (713)
-.. .+... ......+..-++++.+.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 222 12111 1112222223467777777654 35688888654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.6 Score=48.86 Aligned_cols=160 Identities=9% Similarity=0.023 Sum_probs=90.0
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEcc-CCC------CeEEEEEcCCCCEEEEEEC-C---Ce
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHG-HKN------MVLCVKWNQNGNWVLTASK-D---QI 335 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~-h~~------~I~si~fspdg~~Latgs~-D---g~ 335 (713)
-.+.|..|.|..+++.+++...+|.|.+||...+.. +..+.. +.. .|.........+++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 357899999999999999999999999999933221 111211 111 1111111112345555444 3 25
Q ss_pred EEEEECC-CCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-----cccCCCeEEEEE
Q 005123 336 IKLYDIR-AMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-----NVHDNTVWDLAW 406 (713)
Q Consensus 336 I~IwDl~-t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-----~~h~~~V~~l~~ 406 (713)
.+++.+. +...+.++. .+........|+-..|.+..- .+++|.+|++..-.....+. ......+.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 7777771 122222222 222233333444334554444 67799999996554322221 111134556665
Q ss_pred cCCCcEEEEeCCcEEEEecCCCCC
Q 005123 407 HPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 407 spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
-...++|.+.++.|.+.|+.-...
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~si 309 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFESI 309 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhhhh
Confidence 556688889999999999854443
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.68 Score=51.79 Aligned_cols=268 Identities=12% Similarity=0.051 Sum_probs=132.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
...|.++.+.-+| .|.+|+.|| +..||..+++....-..-. ..|..+..+-.+ .|.+|+.+| |.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4578888888887 477788887 7778877777665443332 556665555444 456666666 6666555422221
Q ss_pred eec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEccC--CCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 223 NKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGH--GWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 223 ~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~~h--~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
... .....|..+.-..+| .+-.|+++|..+. ...+... ....+.+ -+.|.++..+.+|. |.+++.++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 111 122334444333333 3555665554332 2222222 1111112 24567777776765 67777777666544
Q ss_pred CCCCceEEEEccCCCCe-EEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCCCCCEEEEEE
Q 005123 299 AKSGRELCSFHGHKNMV-LCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I-~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs 374 (713)
.. ......+...++.+ -.++.++ .+..+-...+.+.+.+-+-.++..+..... -...|+.+++.. ++.+ -.++
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~l-Wlgs 393 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRL-WLGS 393 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcE-EEEe
Confidence 32 22222222221111 1111111 222222333334455555556665544322 235577777765 4444 4444
Q ss_pred CCCcEEEEEcCCCCceEE-EecccCCCeEEEEEcCCCcE-EEEeCCcEE
Q 005123 375 LDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYL-LCSNDHTTK 421 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~-laS~Dg~v~ 421 (713)
...-+..|+.++...... ......++|..|.-.+++.+ |.+.+|.++
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk 442 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVK 442 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEe
Confidence 444455566554222222 22223567877877777754 444555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.81 Score=52.78 Aligned_cols=194 Identities=10% Similarity=0.109 Sum_probs=102.8
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee---eccCCCCeeEEEEecCCCE
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLK 242 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~---~~~~~~~V~~l~fs~dg~~ 242 (713)
-.|+||+... ..+..+.-....+..+.|+.+ ..|++...+|+++||++-....... .......|..+.|..+|
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 3578888654 344443333447889999955 5566678899999999764433221 12233456666665555
Q ss_pred EEEEECCCeEEEEEcCCCeeEEEEcc-CCCce--EEEEEcCCCC---EEEEEe-CCCcEEEEECCCC-ceEEEEccCCCC
Q 005123 243 FCSCSDDTTVKVWDFARCQEERSLTG-HGWDV--KSVDWHPTKS---LLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNM 314 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~~V--~sl~~spdg~---~L~sgs-~Dg~I~IwDl~t~-~~~~~~~~h~~~ 314 (713)
+++-..+|.|.+.+-.....+.++.. ..... +|-+...++. .++-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 33334455555543222222222221 11111 2222222211 111111 011 111211111 112223323466
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeC
Q 005123 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHP 364 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp 364 (713)
+..++.|++.++|+.-+.+|.|.+-+.+..+++.++.... ..-..++|.-
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 8889999999999999999999999998888877776322 1223566654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.45 Score=54.13 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=85.7
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC--CeEEEEEcCCCeeEE--EEc
Q 005123 197 NDNWMVSGDDGG-----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEER--SLT 267 (713)
Q Consensus 197 dg~~L~sgs~DG-----~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D--g~I~iwDl~~~~~~~--~l~ 267 (713)
++.++++|+.++ .+..||..+++-...-.-...........-++...++|+.+ .++..||..+.+-.. .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455566776543 46677777654322211111111111122366677777653 357888876543221 121
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 268 GHGWDVKSVDWHPTKSLLVSGGKDS---LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 268 ~h~~~V~sl~~spdg~~L~sgs~Dg---~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
........+.+ ++++.+.|+.++ .+..||.++.+-... ..........++ -++++.+.| |.+.+||.+
T Consensus 351 ~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 351 KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCC
Confidence 11112222333 477777777543 477888876543221 111111122222 256666666 357788887
Q ss_pred CCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCC
Q 005123 343 AMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGH 386 (713)
Q Consensus 343 t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~ 386 (713)
+.+- +..+.........+.+ ++.+++.|+.+ ..|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceEEEEECCC
Confidence 5432 2222211222223332 56778887754 2355565543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.16 Score=55.79 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=92.6
Q ss_pred cCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEcCC-Cceeeee
Q 005123 154 PTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-------WMVSGDDGGAIKYWQNNM-NNVKANK 224 (713)
Q Consensus 154 pdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~-------~L~sgs~DG~I~vwdl~~-~~~~~~~ 224 (713)
.|.++|+ .|.....++-.|++.++.+.....|... -|.|.|+.+ .-++|-.+..|.-.|-+- ++.+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v- 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV- 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-
Confidence 3445544 4455567888899999999999887766 466776432 223344444454445432 222111
Q ss_pred ccCCCCeeEEEEec----CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 225 SAHKESVRDLSFCR----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 225 ~~~~~~V~~l~fs~----dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
...+..++.-.|+. ...+|++++..|.|++||--.......+.+....|..|..+.+|++|++.|. ..|.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 12223333333332 4568999999999999996554455566677889999999999999888876 667788875
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.65 Score=52.24 Aligned_cols=175 Identities=11% Similarity=0.137 Sum_probs=98.6
Q ss_pred CCeeEEEEecCCCEEEEEE---CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC----CCEEEEEeCCCcEEEEECC-
Q 005123 229 ESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----KSLLVSGGKDSLVKLWDAK- 300 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd----g~~L~sgs~Dg~I~IwDl~- 300 (713)
..|..++|. ||+.++... .+|.+++=| .+.+ +.-..|..++|.|- .-.|++.--...|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467889997 565544332 233333322 1222 23346889999984 2244444556889999875
Q ss_pred ----CCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 301 ----SGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 301 ----t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
+.+.+..-..+ .---..+.|+|....|++-+....-.+++++... .++.-....+.|.|.+|..|+.+++
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22222221111 1112456799999888887766655667765332 2322224567899999999666666
Q ss_pred EEEECCCcEEEEEcCCCCce---E-EEecccCCCeEEEEEcCCCcE
Q 005123 371 VSGSLDGSIFHWLVGHETPQ---V-EIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~---~-~~~~~h~~~V~~l~~spdg~~ 412 (713)
++.+..=.-+|||-..+... . -++ .-.+.|.+|.-.-|..+
T Consensus 172 VAvGSsLHSyiWd~~qKtL~~CsfcPVF-dv~~~Icsi~AT~dsqV 216 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTLHRCSFCPVF-DVGGYICSIEATVDSQV 216 (671)
T ss_pred EEeCCeEEEEEecCchhhhhhCCcceee-cCCCceEEEEEeccceE
Confidence 66666667889986433211 0 111 12345666655555533
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.7 Score=47.78 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCCEEEEEeCCC-----------cEEEEEcCCCceeeeeccCCCCee-EEEEe-cCCCEEEEEECC
Q 005123 197 NDNWMVSGDDGG-----------AIKYWQNNMNNVKANKSAHKESVR-DLSFC-RTDLKFCSCSDD 249 (713)
Q Consensus 197 dg~~L~sgs~DG-----------~I~vwdl~~~~~~~~~~~~~~~V~-~l~fs-~dg~~Las~s~D 249 (713)
++++++.|+.+. .+..||..++.-...-........ ..+.. -++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566777776532 466778766543322111111111 11222 366777776653
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.55 E-value=2.3 Score=46.02 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCEEEEEeCC-----------CcEEEEEcCCCceeeeeccCCCCeeEE-EE-ecCCCEEEEEECC
Q 005123 197 NDNWMVSGDDG-----------GAIKYWQNNMNNVKANKSAHKESVRDL-SF-CRTDLKFCSCSDD 249 (713)
Q Consensus 197 dg~~L~sgs~D-----------G~I~vwdl~~~~~~~~~~~~~~~V~~l-~f-s~dg~~Las~s~D 249 (713)
++++.+.|+.+ ..+..||..+++-.............. .. .-+++.++.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 66777777753 246677877654332211111111111 11 2367777777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.7 Score=47.69 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=85.5
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE--EEcc-CC------CceEEEEEcCCCCEEEEEeC-C---Cc
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTG-HG------WDVKSVDWHPTKSLLVSGGK-D---SL 293 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~--~l~~-h~------~~V~sl~~spdg~~L~sgs~-D---g~ 293 (713)
.++.|.++.|..+++.+++...+|.|.+||........ .+.. +. .-|.........+++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 46789999999999999999999999999993322211 1111 11 11222221122344444443 2 23
Q ss_pred EEEEECC-CCceEEEEc---cCCCCe--EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-----C-CCeEEEE
Q 005123 294 VKLWDAK-SGRELCSFH---GHKNMV--LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-----R-KDVTALA 361 (713)
Q Consensus 294 I~IwDl~-t~~~~~~~~---~h~~~I--~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h-----~-~~V~sl~ 361 (713)
++++.+. +...+..+. .+.... ..+++. +|.+... .+++|.+|++-..+...++... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777771 122222221 122222 233333 4544333 6789999999888766655422 1 2333433
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceE
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~ 391 (713)
- +..++.|++ .+..|++.|+.....+.
T Consensus 285 ~-~s~nRvLLs--~~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 285 P-PSPNRVLLS--VNNKIYLLDLKFESILS 311 (670)
T ss_pred c-CCCCeEEEE--cCCEEEEEeehhhhhhh
Confidence 2 213444443 35589999986554433
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.4 Score=52.41 Aligned_cols=108 Identities=12% Similarity=0.164 Sum_probs=55.6
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC-CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
.....++|++...++|.++.+|.|++|....-+.......-.. .+..+.|......+.+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4567889999999999999999999997654333222111110 22222222222233333445556666544332222
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
....+++....+--.. +.+ .++.+++||+.
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 1222332222111122 334 77788888864
|
|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=4.5 Score=48.98 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=114.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC---CC------ceE---EEEeccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ---SF------NFE---MILQAHDHAIRSMVWSH--NDNWMVSGDDGGAI 210 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~---t~------~~~---~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I 210 (713)
+.+..+......+.|+..+.+|.++..... .. ..+ ..+...+.-|.++.+.. +...+++.+.+|.+
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEE
Confidence 455566666667778888888887776432 21 111 11222233455555552 56789999999999
Q ss_pred EEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCceE
Q 005123 211 KYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVK 274 (713)
Q Consensus 211 ~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V~ 274 (713)
+--++..- .....+. ..+.+..+..+.....|+..+..|.+..+.+.. +.....+.. ...|.
T Consensus 617 KRi~l~~~~~~~r~G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv 694 (805)
T PRK05560 617 KKTSLSEFSNIRSNGIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVV 694 (805)
T ss_pred EEEEhHHhhhcccCCceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEE
Confidence 87765432 1222223 234555555555666777778888777776532 112222322 23344
Q ss_pred E-EEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEE--EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 275 S-VDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 275 s-l~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
+ +.+..++..++..+..|.++..++.. ++-+.. +......+..+....+...++..+.+|.+..+++..
T Consensus 695 ~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e- 773 (805)
T PRK05560 695 SMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE- 773 (805)
T ss_pred EEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH-
Confidence 4 34443334688888889888776532 111222 222223444433333334566667777777776643
Q ss_pred eeEEEeecCCCCeEEEEEe
Q 005123 345 KELESFRGHRKDVTALAWH 363 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fs 363 (713)
+.........|..+.+.
T Consensus 774 --I~~~gR~a~GVk~I~L~ 790 (805)
T PRK05560 774 --ISITGRNTQGVRLIRLD 790 (805)
T ss_pred --CCccccCCCCeeeEecC
Confidence 22222223345555554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.26 Score=54.15 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=88.7
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC--------CEEEEEECCCeEEEEEcCC-CeeEEEE
Q 005123 197 NDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD--------LKFCSCSDDTTVKVWDFAR-CQEERSL 266 (713)
Q Consensus 197 dg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg--------~~Las~s~Dg~I~iwDl~~-~~~~~~l 266 (713)
|.++|+ .+.....++-.|++.++++.....+..- -+.|.++. ..|+ |-.+..|.-.|-+- +..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 444444 4555567777789999998888766654 45666543 2343 44444555555432 2222211
Q ss_pred c----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 267 T----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 267 ~----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
. .......|..-. ...++++++..|.|++||--.-+....+.+....|..|..+.+|++|++.|. .+|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1 112223333333 3458999999999999996544444456667788999999999999887764 578888875
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.019 Score=66.43 Aligned_cols=190 Identities=11% Similarity=0.169 Sum_probs=110.0
Q ss_pred CCcEEEEeCCCCc-eEEEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCC--Cceee-----eeccCCCCeeEEE
Q 005123 165 SGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM--NNVKA-----NKSAHKESVRDLS 235 (713)
Q Consensus 165 dg~V~Iwd~~t~~-~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~--~~~~~-----~~~~~~~~V~~l~ 235 (713)
.+-|++-|..+.- ....+++..+.|-.+.|.... ..++ ..-|.+.|||++- |++.. ........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 3456666655432 123345667788888885422 2222 3347788998753 33222 2222334455566
Q ss_pred Eec---CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC
Q 005123 236 FCR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 236 fs~---dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
|++ +..+++.+..+++|++..+++... ..+++|...+..++|...|-.++.+
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------ 242 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------ 242 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------
Confidence 654 567777888888888887765433 3445588888887776544322221
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEC-----CCCeeEEEeecCCC-CeEEEEEeCCCC---------CEEEEEEC-C
Q 005123 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDI-----RAMKELESFRGHRK-DVTALAWHPFHE---------EYFVSGSL-D 376 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs~Dg~I~IwDl-----~t~~~l~~~~~h~~-~V~sl~fsp~~~---------~~lasgs~-D 376 (713)
+|+||+.|++++.||.+++|.+ +.-++++.++.|++ .-.|.-|+. .. .+++++++ +
T Consensus 243 -------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~n 314 (1283)
T KOG1916|consen 243 -------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVN 314 (1283)
T ss_pred -------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCC
Confidence 7889999999999988777754 33445666666663 222222332 11 13444444 4
Q ss_pred CcEEEEEcCCCCc
Q 005123 377 GSIFHWLVGHETP 389 (713)
Q Consensus 377 G~I~Iwd~~~~~~ 389 (713)
..+++|....-.+
T Consensus 315 re~k~w~~a~w~C 327 (1283)
T KOG1916|consen 315 REEKFWAEAPWQC 327 (1283)
T ss_pred cceeEeeccchhh
Confidence 4588887654443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.2 Score=46.60 Aligned_cols=151 Identities=10% Similarity=0.140 Sum_probs=92.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCC--c-eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMN--N-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---- 263 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~--~-~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~---- 263 (713)
.+-|. |.+.++.+...|.+.-|.+... . .+..-....+.|.+|.|+.|++.||+--.|++|.+++....+..
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34444 4444444445566666655432 2 22222345669999999999999999999999999987322221
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYD 340 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwD 340 (713)
.+.+.....|....|+.+ .-++..+..| +.+|.+.. .+.++..+.++..|+...|.++-+.++.++ ..+++.=+-
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 122233456889999865 4455555434 77776544 334555666778888889988877655444 334444444
Q ss_pred CCCC
Q 005123 341 IRAM 344 (713)
Q Consensus 341 l~t~ 344 (713)
++++
T Consensus 184 ~~~~ 187 (657)
T KOG2377|consen 184 FRAG 187 (657)
T ss_pred Eeec
Confidence 4443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.4 Score=55.43 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=80.0
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcC
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~ 385 (713)
+.......+-+.-|.-++.-++-+....+.|||.+.+....+-. ...+.|.++.|... ++..+++.+....|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333445555555555544454455689999999876433222 34678999999642 56788888889999998541
Q ss_pred -----CCC---ceEE-E-ecccC-CCeEEEEEcCCCcEEEEeCCcEEEEecCCC
Q 005123 386 -----HET---PQVE-I-HNVHD-NTVWDLAWHPIGYLLCSNDHTTKFWCRNRP 428 (713)
Q Consensus 386 -----~~~---~~~~-~-~~~h~-~~V~~l~~spdg~~laS~Dg~v~iWd~~~~ 428 (713)
... ..++ + ...++ ..|.+..|..+|.++++.++.+.|++....
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 111 1111 1 12233 679999999999999999999999986544
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.1 Score=47.27 Aligned_cols=187 Identities=8% Similarity=-0.012 Sum_probs=89.7
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCceEEEEec--cCC--CEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q 005123 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQA--HDH--AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 218 (713)
Q Consensus 155 dg~~Latgs~d-------g~V~Iwd~~t~~~~~~l~~--h~~--~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~ 218 (713)
++.+++.|+.+ ..+.+||+.+.+....-.. ... .....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2477888877554321110 000 11111122255666677654 35778888776
Q ss_pred ceeeeecc---CCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCCCCEE
Q 005123 219 NVKANKSA---HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 219 ~~~~~~~~---~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spdg~~L 285 (713)
+-...... ........+..-++++++.++.+ ..+.+||+.+.+-...-. ........+.+ +++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEE
Confidence 43321111 01111111122355566666543 346778877654321110 01111222222 46777
Q ss_pred EEEeCC----CcEEEEECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 005123 286 VSGGKD----SLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIR 342 (713)
Q Consensus 286 ~sgs~D----g~I~IwDl~t~~~~~~~~~-----h~~~I~si~fspdg~~Latgs~D--------------g~I~IwDl~ 342 (713)
+.++.+ ..|.+||+.+.+-...-.. ......++.+ ++++++.|+.+ ..+.+||+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 777655 4589999987654322110 1111222222 56777777743 247888887
Q ss_pred CCe
Q 005123 343 AMK 345 (713)
Q Consensus 343 t~~ 345 (713)
+.+
T Consensus 411 t~~ 413 (470)
T PLN02193 411 TLQ 413 (470)
T ss_pred cCE
Confidence 654
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=95.33 E-value=6.6 Score=47.54 Aligned_cols=197 Identities=10% Similarity=0.014 Sum_probs=109.8
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---------ceE---EEEeccCCCEEEEEEc--cCCCEEEEEeCCCc
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------NFE---MILQAHDHAIRSMVWS--HNDNWMVSGDDGGA 209 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---------~~~---~~l~~h~~~V~sl~~s--pdg~~L~sgs~DG~ 209 (713)
.+.+..+......+.|+..+.+|.++..+.... ..+ ..+...+.-|.++... .++.+++..+.+|.
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gy 613 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGV 613 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCE
Confidence 345666666667777888888888877653221 111 1122223345555542 25568899999999
Q ss_pred EEEEEcCCCce-------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCce
Q 005123 210 IKYWQNNMNNV-------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDV 273 (713)
Q Consensus 210 I~vwdl~~~~~-------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V 273 (713)
++-.++..-.. ...+.. .+.+..+..+.....++..+..|.+..+.+.. +.....+. ....|
T Consensus 614 iKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~V 691 (800)
T TIGR01063 614 VKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFV 691 (800)
T ss_pred EEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEE
Confidence 99887653221 112222 34555555555666677777888777666532 11222222 23345
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.++....++..|+..+..|.++...+.. ++-+..+ ......+..+....+...++..+.+|.+..+++.
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 5555444555788888889888776532 1222222 2222344444444444456666777777666654
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.31 E-value=4.7 Score=42.59 Aligned_cols=161 Identities=12% Similarity=0.160 Sum_probs=91.9
Q ss_pred eEEEEEcCCCeeEEEEcc------CCCceEEEEEcCCC-----CEEEEEe-CCCcEEEEECCCCceEEEEccC-------
Q 005123 251 TVKVWDFARCQEERSLTG------HGWDVKSVDWHPTK-----SLLVSGG-KDSLVKLWDAKSGRELCSFHGH------- 311 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~------h~~~V~sl~~spdg-----~~L~sgs-~Dg~I~IwDl~t~~~~~~~~~h------- 311 (713)
+|.+||+++.+.++++.- ..+.+..+.+.... .++..+. ..+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688889988888777642 24567788887632 2333333 3357999999998776655422
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-----Ce---------eEEEeecCCCCeEEEEE
Q 005123 312 ------------KNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRA-----MK---------ELESFRGHRKDVTALAW 362 (713)
Q Consensus 312 ------------~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t-----~~---------~l~~~~~h~~~V~sl~f 362 (713)
...+..++.++ ++++|+.....+ .++|.+.+ .. .+..+-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12366667665 667777766544 23333321 10 11222111235567788
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCC---ceEEEeccc--CCCeEEEEEcC--CCcEE
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVH--DNTVWDLAWHP--IGYLL 413 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~---~~~~~~~~h--~~~V~~l~~sp--dg~~l 413 (713)
++ ++.++++--..+.|..|+..... ....+.... -..+.++++.. ++.+.
T Consensus 194 D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~ 250 (287)
T PF03022_consen 194 DP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLW 250 (287)
T ss_dssp ET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EE
T ss_pred CC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEE
Confidence 88 78889999999999999987622 111122211 24567888888 65443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=4.2 Score=41.88 Aligned_cols=222 Identities=10% Similarity=0.022 Sum_probs=131.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE-E-
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-S- 265 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~-~- 265 (713)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+..-++-+.. .|.-+|-++.+..+ .
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44567788899888888888888888988998877766667777788888888776664433 45555655543322 1
Q ss_pred -EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 266 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 266 -l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.+.-....+...|++.|++-+++.. |.---.|-.+ ..+..+.. ....-+.|+..+||+..++.-.+..|-..|-.+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1223456788999999988777753 2211112111 12222221 233457788899999888877788888888776
Q ss_pred CeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 344 MKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 344 ~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
+.. .++. ........+--++ -++..++....+.+.-||-....-..-.+-+....-.++..+..+++-.
T Consensus 220 ~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 220 GHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred CCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 522 2221 1122233443344 5777777777777877776443311112222233344444544444433
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=4.5 Score=48.63 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=35.6
Q ss_pred EEccCCCEEEEEEC---------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC
Q 005123 151 LWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 151 ~~spdg~~Latgs~---------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
.+++|.++++++.. .+...+|++.++..........+.+.++.|++.++.|+-.-.
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence 66677776666543 345677777777622222223455789999999977776543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.066 Score=39.91 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQ 174 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~ 174 (713)
...|.+++|+|..++||+++.||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=95.04 E-value=6.1 Score=42.49 Aligned_cols=142 Identities=9% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCc------EEEEEcCCC----ceee-----eeccC--------CCCeeEEEEecCCCEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGA------IKYWQNNMN----NVKA-----NKSAH--------KESVRDLSFCRTDLKF 243 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~------I~vwdl~~~----~~~~-----~~~~~--------~~~V~~l~fs~dg~~L 243 (713)
+.++.|.+.+++..+++.+++|. +..+++... ..+. .+... .....+|++..++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55778888865666666666666 555554431 0000 01111 1145678887778777
Q ss_pred EEEECC------CeEEEEEcCCCeeEEEEc---------------cCCCceEEEEEcCCCCEEEEEeCC-----C--c--
Q 005123 244 CSCSDD------TTVKVWDFARCQEERSLT---------------GHGWDVKSVDWHPTKSLLVSGGKD-----S--L-- 293 (713)
Q Consensus 244 as~s~D------g~I~iwDl~~~~~~~~l~---------------~h~~~V~sl~~spdg~~L~sgs~D-----g--~-- 293 (713)
++.-.+ ..|+.+|.. ++.+..+. .....+.+|+++++++.|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 678888865 44433331 134568899999999977776542 2 1
Q ss_pred -----EEE--EECCC-CceEE----EEcc-----CCCCeEEEEEcCCCCEEEE
Q 005123 294 -----VKL--WDAKS-GRELC----SFHG-----HKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 294 -----I~I--wDl~t-~~~~~----~~~~-----h~~~I~si~fspdg~~Lat 329 (713)
++| ||..+ ++... .+.. ....|+.+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 45544 22222 2222 3567889999999887664
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.92 Score=53.02 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCCEEEEEECCCeEEEEEcCC-------C----e---------eEEEEccCCCceEEEEEc--CCCCEEEEEeCCCcEEE
Q 005123 239 TDLKFCSCSDDTTVKVWDFAR-------C----Q---------EERSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 239 dg~~Las~s~Dg~I~iwDl~~-------~----~---------~~~~l~~h~~~V~sl~~s--pdg~~L~sgs~Dg~I~I 296 (713)
+...|+.|.+||.|.+|.+++ . + ....+. ....+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 456788888899999996521 0 0 111222 34578899998 77788888888888887
Q ss_pred EECCC--CceEE-EEccCCCCeEEEEEcCCC---C---EEEEEECCCeEEEEEC
Q 005123 297 WDAKS--GRELC-SFHGHKNMVLCVKWNQNG---N---WVLTASKDQIIKLYDI 341 (713)
Q Consensus 297 wDl~t--~~~~~-~~~~h~~~I~si~fspdg---~---~Latgs~Dg~I~IwDl 341 (713)
|-... .+... .-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75433 11111 111256678999997643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.18 Score=54.58 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=102.3
Q ss_pred EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE-EEE-ccCCC----CeE-EEEEcCCCCEEEEEECCCeEE
Q 005123 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSF-HGHKN----MVL-CVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 265 ~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~-~~~-~~h~~----~I~-si~fspdg~~Latgs~Dg~I~ 337 (713)
.+......|..+-+.||+++|.+-+. .++.|+++.+.... +++ ....+ .|+ .+..-..|..|++++.||.|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 34445567888999999998887765 77889988753321 122 11111 122 122233567788899999887
Q ss_pred EE-ECCCC-----eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 338 LY-DIRAM-----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 338 Iw-Dl~t~-----~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
-| |++.. ..++.++-....+..+.-.. +.+-+++-+.+|++.++.....+...... --..+.-+++|+++.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcccc
Confidence 76 55532 22334443334555554433 56678888999999988764444332221 123567789999998
Q ss_pred EEEE-eCCcEEEEecCCCCC
Q 005123 412 LLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 412 ~laS-~Dg~v~iWd~~~~~~ 430 (713)
.+.+ +.+.++++.++....
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 8888 779999999876543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.9 Score=45.23 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCeeEE--EEcc---CCCc-eEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 005123 239 TDLKFCSCSDD-----TTVKVWDFARCQEER--SLTG---HGWD-VKSVDWHPTKSLLVSGGKD-----------SLVKL 296 (713)
Q Consensus 239 dg~~Las~s~D-----g~I~iwDl~~~~~~~--~l~~---h~~~-V~sl~~spdg~~L~sgs~D-----------g~I~I 296 (713)
++++++.|+.+ ..|.+||..+.+-.. .+.. .... -.+++. -++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45566666543 357888887654322 1110 1111 112222 245667777653 24778
Q ss_pred EECCCCc
Q 005123 297 WDAKSGR 303 (713)
Q Consensus 297 wDl~t~~ 303 (713)
||.++.+
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8887654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.1 Score=50.81 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
.-.|..|.++++|++||..+..|. .|-.+.. ......+.+....|.|=.+.-+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence 347999999999999999988764 4443321 11111222222233322222111111
Q ss_pred eeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCC
Q 005123 223 NKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~ 259 (713)
.......|..+.|+|. +..|++-+.|++||+||+.+
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123445667777764 46777778888888888854
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1 Score=44.34 Aligned_cols=172 Identities=10% Similarity=0.071 Sum_probs=98.6
Q ss_pred CCCEEEEEEC--CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccCCCCe
Q 005123 155 TGRRLITGSQ--SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESV 231 (713)
Q Consensus 155 dg~~Latgs~--dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V 231 (713)
+|.++.+.+. ...|++||+.+++.+.........+..=-...-++++ +..-.+|.-.++|.++.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 3444444433 3569999999988776654332122111111113333 3445678888899888777665532 2333
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc--C---CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--H---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~--h---~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~ 306 (713)
+.++ .|++.|+.++...+++.-|-++.....++.. . -..++.+.|- +|...+-.-.+..|...|..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 4443 4666677777667787777665444333221 1 1234555554 56666655566667777777777665
Q ss_pred EEc------------cCCCCeEEEEEcCCCC-EEEEE
Q 005123 307 SFH------------GHKNMVLCVKWNQNGN-WVLTA 330 (713)
Q Consensus 307 ~~~------------~h~~~I~si~fspdg~-~Latg 330 (713)
.+. .+.+..+.|++.+++. ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 543 2445678889988764 44444
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.77 E-value=5.5 Score=42.02 Aligned_cols=185 Identities=10% Similarity=0.108 Sum_probs=100.5
Q ss_pred ceEEEEEccCCCEEEE--EEC----------CCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCC-----CEEE
Q 005123 146 SINRVLWTPTGRRLIT--GSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHND-----NWMV 202 (713)
Q Consensus 146 ~V~~v~~spdg~~Lat--gs~----------dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg-----~~L~ 202 (713)
+|..+....++++-+. |.- .-+|.+||+.+.+.++++... .+.+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3667777777754443 211 126899999999998887643 3567778776522 3444
Q ss_pred EEeC-CCcEEEEEcCCCceeeeeccCC-------------------CCeeEEEEec---CCCEEEEEECCC-eEEEEEc-
Q 005123 203 SGDD-GGAIKYWQNNMNNVKANKSAHK-------------------ESVRDLSFCR---TDLKFCSCSDDT-TVKVWDF- 257 (713)
Q Consensus 203 sgs~-DG~I~vwdl~~~~~~~~~~~~~-------------------~~V~~l~fs~---dg~~Las~s~Dg-~I~iwDl- 257 (713)
.+.. .+-|.|+|+.+++..+.+..+. ..+..++.++ +++.|+-..-.+ +++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 4443 3689999999887665543211 1244444443 444444443322 1222211
Q ss_pred --CCCe---------eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEE-c-cC-CCCeEEEEE
Q 005123 258 --ARCQ---------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSF-H-GH-KNMVLCVKW 320 (713)
Q Consensus 258 --~~~~---------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~-~-~h-~~~I~si~f 320 (713)
++.. .+..+-........++++++|.++++--..+.|..||.++.- ....+ . .. -.++..+++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence 1100 111221112356678888889888888889999999988611 12222 1 12 357888999
Q ss_pred cC--CCCEEEEE
Q 005123 321 NQ--NGNWVLTA 330 (713)
Q Consensus 321 sp--dg~~Latg 330 (713)
.. +|.+.+.+
T Consensus 242 ~~~~~g~L~v~s 253 (287)
T PF03022_consen 242 DPEGDGYLWVLS 253 (287)
T ss_dssp -T--TS-EEEEE
T ss_pred ccccCceEEEEE
Confidence 88 66655554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.71 E-value=8 Score=42.22 Aligned_cols=193 Identities=15% Similarity=0.154 Sum_probs=110.1
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEc----cCCCE--EE-EEeCC---CcEEEEEcCC--Ccee
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS----HNDNW--MV-SGDDG---GAIKYWQNNM--NNVK 221 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~s----pdg~~--L~-sgs~D---G~I~vwdl~~--~~~~ 221 (713)
|...+|+....++-+.+||+... .+..+. .+.++.|..- -+++. |+ ++.++ ..|++|.+.. +.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 34567778888889999999854 444443 2344444332 13432 33 44443 4699997763 3332
Q ss_pred eee------ccCCCCeeEEEEec---CCC-EEEEEECCCeEEEEEcC---CC----eeEEEEccCCCceEEEEEcCCCCE
Q 005123 222 ANK------SAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 222 ~~~------~~~~~~V~~l~fs~---dg~-~Las~s~Dg~I~iwDl~---~~----~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
... ......+..+|+-. ++. ++++...+|.+..|.+. ++ +.++.|. -...+..+..+....+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEecccCC
Confidence 211 11223467777743 343 56677889998888773 22 3466665 3457899999988889
Q ss_pred EEEEeCCCcEEEEECCC-----CceEEEEcc--CCCCeEEEEEcC--CC-CEEEEEE-CCCeEEEEECCC-CeeEEEe
Q 005123 285 LVSGGKDSLVKLWDAKS-----GRELCSFHG--HKNMVLCVKWNQ--NG-NWVLTAS-KDQIIKLYDIRA-MKELESF 350 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t-----~~~~~~~~~--h~~~I~si~fsp--dg-~~Latgs-~Dg~I~IwDl~t-~~~l~~~ 350 (713)
|+++-++.-|.-|+.+- ++.+....+ ....|-.|++-. ++ .||++++ .+++..|||.+. ...+..|
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 99999998888888762 122222222 345677777643 33 3565555 567899999874 2334444
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.46 Score=55.01 Aligned_cols=226 Identities=17% Similarity=0.193 Sum_probs=107.5
Q ss_pred EEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-
Q 005123 190 RSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL- 266 (713)
Q Consensus 190 ~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l- 266 (713)
.++-.+..|...++| +..|.+-+=|..+.-.-+...+ ....|.+|+.+.+...+++ .+|.|+-|-++....+...
T Consensus 188 HSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT--~~g~Vys~GlN~~hqLG~~~ 265 (1267)
T KOG0783|consen 188 HSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLT--KFGSVYSWGLNGSHQLGLSN 265 (1267)
T ss_pred eeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEe--ecceEEEeecCcccccCCcC
Confidence 344445455533333 2345555544443322222233 3456888888877665554 6889999987653322111
Q ss_pred ----------------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--------E---EEccCCCCeEEE-
Q 005123 267 ----------------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--------C---SFHGHKNMVLCV- 318 (713)
Q Consensus 267 ----------------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~--------~---~~~~h~~~I~si- 318 (713)
++.. .|..++- |+.--++-.|..|+.|-++.|+.- . .+.+....|.-+
T Consensus 266 ~~~~~~~p~qI~a~r~kg~~-~iIgvaA---g~~hsVawt~~~VY~wGlN~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~ 341 (1267)
T KOG0783|consen 266 DELKKDDPIQITARRIKGFK-QIIGVAA---GKSHSVAWTDTDVYSWGLNNGQLGISDNISVVTTPRRLAGLLSPVIHVV 341 (1267)
T ss_pred chhhcCchhhhhhHhhcchh-hhhhhhc---ccceeeeeecceEEEecccCceecCCCCCceeecchhhcccccceEEEE
Confidence 1111 2222221 222223334566888888766532 0 111111122211
Q ss_pred -------EEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 319 -------KWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 319 -------~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~-sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
++..++..++.+.....+.-++...++.+....+|-..-+ .+.=.-.....|+.-..-|.|+.|+-.+....
T Consensus 342 a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~ 421 (1267)
T KOG0783|consen 342 ATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT 421 (1267)
T ss_pred ecCccEEEEecCCcEEEEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee
Confidence 1222233333333333333333334444444443322111 11000012345677778899999997554322
Q ss_pred EEEe-cccCCCeEEEEEcCCCcEEEEeCCcEE
Q 005123 391 VEIH-NVHDNTVWDLAWHPIGYLLCSNDHTTK 421 (713)
Q Consensus 391 ~~~~-~~h~~~V~~l~~spdg~~laS~Dg~v~ 421 (713)
...+ ...--.|.+|+|..+..++|+.||+.+
T Consensus 422 ~c~ftp~r~~~isdIa~~~N~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 422 SCKFTPLRIFEISDIAWTANSLILCTRDGCWK 453 (1267)
T ss_pred eeecccceeeehhhhhhccceEEEEecCccee
Confidence 2211 111235778999999999999999544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.67 E-value=6.1 Score=40.69 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=145.5
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...-..|+-.+||..-+++...+.|--.|-.+++.+..-.+....-..|..-+|+..-++-+.. -|.-.|-++.+....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 3445678888999989999888888888988888877766666667778888888776654433 344445444443322
Q ss_pred ---eccCCCCeeEEEEecCCCEEEEEECC---------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 224 ---KSAHKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 224 ---~~~~~~~V~~l~fs~dg~~Las~s~D---------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.+......+...|.++|++-+++... +.|++|+.- ....-..|+..+||..-++.-.+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 23344567888899999888887531 234444332 23456788899999988887778
Q ss_pred CcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE--eecCCCCeEEEEEeCCCC
Q 005123 292 SLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp~~~ 367 (713)
+.|...|..++.....- +........+.-++.|+.-++....+.+.-||-.+.. -.+ +.+....-.++.... .+
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~-~g 287 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDR-HG 287 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeecc-CC
Confidence 88888888776322111 1212334455556678878887777888888865433 222 333344445555554 44
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 005123 368 EYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~ 386 (713)
++.++--..|.|.-||-++
T Consensus 288 rVW~sea~agai~rfdpet 306 (353)
T COG4257 288 RVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cEEeeccccCceeecCccc
Confidence 5555444455666666543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.48 Score=54.60 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=55.4
Q ss_pred EEEEecCCCEEEEEECCC-----eEEEEEcC---CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 233 DLSFCRTDLKFCSCSDDT-----TVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg-----~I~iwDl~---~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
.++|-|.|+.+++-..|| .|+++.-+ .++.-.. .+....+..++|+-....++++ ..+.|.+|-..+..-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 378999999999877554 34454421 1111111 1233456677887655555444 457799998877655
Q ss_pred EEEEccCCCCeEEEEEcCCC
Q 005123 305 LCSFHGHKNMVLCVKWNQNG 324 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg 324 (713)
..+.......+.-+.|+|..
T Consensus 329 YLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEeecCCCcceeeecccc
Confidence 44444455567788999954
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=94.61 E-value=6.1 Score=47.75 Aligned_cols=114 Identities=8% Similarity=0.034 Sum_probs=69.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-----eeEEEeecCC----------CCeEEEEEeCCCCCEEEEEEC
Q 005123 312 KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-----KELESFRGHR----------KDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 312 ~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~-----~~l~~~~~h~----------~~V~sl~fsp~~~~~lasgs~ 375 (713)
......++|+| +.+.||+....|...|||+... ..+.....+. +....|.|.. +.+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC
Confidence 34577899998 5678999999999999999211 1111111111 2234788987 5556666554
Q ss_pred CCcEEEEEcCCCCceE-EEecccCCCeEEEEEcCC--CcEEEEeCCcEEEEecCC
Q 005123 376 DGSIFHWLVGHETPQV-EIHNVHDNTVWDLAWHPI--GYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~-~~~~~h~~~V~~l~~spd--g~~laS~Dg~v~iWd~~~ 427 (713)
..+.++|+++..... .........|.++.-+++ +.++.-....|.+.++..
T Consensus 224 -~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 478999997765422 222224567888888877 333332345555555554
|
These proteins are found in fungi. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.2 Score=55.71 Aligned_cols=147 Identities=11% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
|...++.|.-+++|.++=. .|+.|+.||.........-...+..++.+.-.-||+..+ .++.. |-|+..+....
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~~-l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDDT-LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCCc-eeecCCCCcch
Confidence 5556666766666665543 356777777654422210011223344444444444443 11111 22333332211
Q ss_pred eeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCC------e--eEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 223 NKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARC------Q--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~------~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
..-..|.++..++++.. +.++.+..+|.+|++... + ....+.+-.....+|.++.+ .|+++..+|.
T Consensus 435 ---~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGk 509 (1774)
T PF11725_consen 435 ---AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGK 509 (1774)
T ss_pred ---hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCC
Confidence 12346777888889887 555555556799998543 1 12233333446778888754 6888888898
Q ss_pred EEEEECC
Q 005123 294 VKLWDAK 300 (713)
Q Consensus 294 I~IwDl~ 300 (713)
|+.=|+.
T Consensus 510 LYsa~l~ 516 (1774)
T PF11725_consen 510 LYSADLP 516 (1774)
T ss_pred EEecccc
Confidence 8887764
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.011 Score=64.36 Aligned_cols=137 Identities=11% Similarity=0.206 Sum_probs=94.3
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeecc
Q 005123 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
....|-+++.-++.++.+..|..||-... ....+. -.+...+++|..+++.++ .+-..+.+.+||+++......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34456777766888888889999985532 222222 245566788988887655 556779999999886543222122
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
....-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|...+..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 222223377888888888888999999999887766666655888999999998764433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.1 Score=51.37 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=27.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS 175 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t 175 (713)
....-++++.-+|.+..++.++.||+|++|+...
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 3445577888889999999999999999998554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.1 Score=38.83 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
...|.+++|+|..++||.++.||.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999999 45543
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=94.48 E-value=7.9 Score=41.12 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC-Ce----EEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DV----TALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-~V----~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
|++|....+|++|++.-.-..|.+.|-++++.+..+.+... .. ...+|-. +-+++-.+..++.|.|||-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcC
Confidence 67888888999999998889999999999999988876522 11 1123322 3344445566778888876
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=12 Score=42.98 Aligned_cols=231 Identities=10% Similarity=0.068 Sum_probs=118.6
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccC-CCCeeEEEEecCC-CEEEEEECC--CeEEEEEcCCCeeEEEEcc
Q 005123 195 SHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAH-KESVRDLSFCRTD-LKFCSCSDD--TTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 195 spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~-~~~V~~l~fs~dg-~~Las~s~D--g~I~iwDl~~~~~~~~l~~ 268 (713)
..++..++.+.++|.+....+.... ......+. ....+++++..++ .+|++|+.- +.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4466789999999999988776544 12222222 4556677777655 467777764 455555544444444554
Q ss_pred CCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCceEE----EEccC--CCCeEEEEEcC-CCCEEE
Q 005123 269 HGWDVKSVDWHPT----KS------LLVSGG---KDSLVKLWDAKSGRELC----SFHGH--KNMVLCVKWNQ-NGNWVL 328 (713)
Q Consensus 269 h~~~V~sl~~spd----g~------~L~sgs---~Dg~I~IwDl~t~~~~~----~~~~h--~~~I~si~fsp-dg~~La 328 (713)
.-++|.++++... .. .|++++ .+|.|++.. .|-... ..... -..++.+.... ++.+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4567888888531 11 455554 467788873 232222 11112 22344444322 256777
Q ss_pred EEECCCeEEEEECC---CCeeEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE
Q 005123 329 TASKDQIIKLYDIR---AMKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (713)
Q Consensus 329 tgs~Dg~I~IwDl~---t~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~ 403 (713)
.+..+. -+|+.+. ..+.+..+. +.......+......+..++=.... .|++.+.................|.+
T Consensus 376 ~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 376 LSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp EEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SE
T ss_pred EEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 776554 4565553 334432221 2222222222222234555555544 58888876555443333334566777
Q ss_pred EEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 404 LAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 404 l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
.+++....+++..++.+.++.++....
T Consensus 454 a~~~~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 454 ASINDPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEESSSEEEEEE-TTEEEEEEEETTEE
T ss_pred EEECCCEEEEEEeCCcEEEEEEECCce
Confidence 777776666666899999998866554
|
... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.5 Score=51.32 Aligned_cols=111 Identities=8% Similarity=0.165 Sum_probs=73.9
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C----c---------eEEEEccCCCCeEEEEEc--CCCCEEE
Q 005123 273 VKSVDWHP--TKSLLVSGGKDSLVKLWDAKS-------G----R---------ELCSFHGHKNMVLCVKWN--QNGNWVL 328 (713)
Q Consensus 273 V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t-------~----~---------~~~~~~~h~~~I~si~fs--pdg~~La 328 (713)
|+-|.... +...|++|.+||.|.+|.+++ . + +...+. ....+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554443 456899999999999997631 0 0 111112 34568889998 7788888
Q ss_pred EEECCCeEEEEECCCCee--E-EEeecCCCCeEEEEEeCCC--CC---EEEEEECCCcEEEEEc
Q 005123 329 TASKDQIIKLYDIRAMKE--L-ESFRGHRKDVTALAWHPFH--EE---YFVSGSLDGSIFHWLV 384 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~~--l-~~~~~h~~~V~sl~fsp~~--~~---~lasgs~DG~I~Iwd~ 384 (713)
+++....|.||-....+. . ..-..+...|-+|+|-+++ +. .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888876543211 1 1111256678899997743 22 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.2 Score=51.50 Aligned_cols=111 Identities=14% Similarity=0.269 Sum_probs=72.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECC-----
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIR----- 342 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~----- 342 (713)
..+.-+.-+.-++..++-+...++.|||.+.+....+-. ...+.|.++.|.. |+..+++.+-...|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555555555555555679999999877544322 3467899999865 78888888888889888531
Q ss_pred ----CCeeEEEe--ecCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 343 ----AMKELESF--RGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 343 ----t~~~l~~~--~~h~-~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+...++.+ ..++ ..|.+..|.. ++.+++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence 12233333 3344 6799999998 56555544 347888875
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.6 Score=44.62 Aligned_cols=142 Identities=14% Similarity=0.233 Sum_probs=84.6
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C--CeEEEEEcCC----CeeEE---EEccCCCceEEEEE
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D--TTVKVWDFAR----CQEER---SLTGHGWDVKSVDW 278 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D--g~I~iwDl~~----~~~~~---~l~~h~~~V~sl~~ 278 (713)
.-.+||+.+++..........-+.+-.+.+||++|.+|+. + ..|++++-.+ ..-.. .+. ....--++..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 3468999988765544344444555567889999998875 2 3578887543 11110 111 2334445566
Q ss_pred cCCCCEEEEEeCCC-cEEEEECCCC-ceEEE---Ec-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 279 HPTKSLLVSGGKDS-LVKLWDAKSG-RELCS---FH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 279 spdg~~L~sgs~Dg-~I~IwDl~t~-~~~~~---~~-----~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
.+||+.|+.|+.+. +..+|.-+.. ..... +. .....--.+...|||++|+.+..+ -.|||..+.+.++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 67999999988765 3556654321 11111 11 111223356678899999888765 4677988887767
Q ss_pred EeecC
Q 005123 349 SFRGH 353 (713)
Q Consensus 349 ~~~~h 353 (713)
.+..-
T Consensus 204 ~lP~l 208 (243)
T PF07250_consen 204 TLPDL 208 (243)
T ss_pred eCCCC
Confidence 66543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.7 Score=41.86 Aligned_cols=138 Identities=7% Similarity=0.112 Sum_probs=79.2
Q ss_pred CEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccCCCEEEEEeCC---C---cEEEE-EcCC----Cceee-
Q 005123 157 RRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G---AIKYW-QNNM----NNVKA- 222 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G---~I~vw-dl~~----~~~~~- 222 (713)
+.|+.+.....|.+|++.+ .....++.. -+.|..+.++..|++|++--++ . .+++| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5566657778899999883 344445543 3789999999999999986432 2 55664 2211 11111
Q ss_pred eec---------------------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-E-----EEEc----cC--
Q 005123 223 NKS---------------------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-E-----RSLT----GH-- 269 (713)
Q Consensus 223 ~~~---------------------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~-----~~l~----~h-- 269 (713)
.+. .....+.+++.++....|++|+. +++.+|.+..... . ..+. .|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 111 12345677787775555666654 4788888754322 1 1111 01
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005123 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl 299 (713)
.-....+++. +.++|..++ -.++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1224556665 567776654 55666654
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=94.22 E-value=13 Score=42.40 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=60.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC---eeEEEEecCCCEEEEEEC-------------CCeEEEE
Q 005123 192 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES---VRDLSFCRTDLKFCSCSD-------------DTTVKVW 255 (713)
Q Consensus 192 l~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~---V~~l~fs~dg~~Las~s~-------------Dg~I~iw 255 (713)
+...++|.+++... ..+..+|+. |+++......... -.++...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66677888877655 778888875 4444443322211 346677788888887771 1235555
Q ss_pred EcCCCeeEEEEcc--CC-------------------------CceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceEEE
Q 005123 256 DFARCQEERSLTG--HG-------------------------WDVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGRELCS 307 (713)
Q Consensus 256 Dl~~~~~~~~l~~--h~-------------------------~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~t~~~~~~ 307 (713)
| .+++.+..+.. |- --+++|.+.+..+.|++.++. ..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 5 55555544321 10 127899999955555555554 4788999888887776
Q ss_pred EccC
Q 005123 308 FHGH 311 (713)
Q Consensus 308 ~~~h 311 (713)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.0055 Score=66.49 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=98.3
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEcc
Q 005123 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
....|-+++..++.++.+..|..||-.. +....+. .......++|+.++..+ +.+-..+.+.+||+.+...-..-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3455666776688888888999999543 3333333 34566788888877644 4456678899999986432111111
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~ 378 (713)
.+..-.-+.|++....++.+...+.+.||+..+.+.+...-.|...++.++|.. +++.+.++.|..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~ 181 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNT 181 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHH
Confidence 122222278999888999999999999999988777766666889999999987 455666665543
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.9 Score=48.07 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
+..|.+++..+..++|++.+.++.|.+||+..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34488999988889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.25 Score=56.68 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=7.7
Q ss_pred CCCCCCCCCCC
Q 005123 513 GAPPLPPGPHP 523 (713)
Q Consensus 513 g~p~~~~~~~~ 523 (713)
|++|.||+..|
T Consensus 525 ~~iP~PP~~pp 535 (1102)
T KOG1924|consen 525 GGIPPPPPLPP 535 (1102)
T ss_pred CCCCCCCCCCC
Confidence 78887777444
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.83 E-value=3.4 Score=44.72 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=27.1
Q ss_pred CCCEEEEEECC-----------CcEEEEeCCCCceEEEEeccCCCEE--EEEEccCCCEEEEEeCC
Q 005123 155 TGRRLITGSQS-----------GEFTLWNGQSFNFEMILQAHDHAIR--SMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 155 dg~~Latgs~d-----------g~V~Iwd~~t~~~~~~l~~h~~~V~--sl~~spdg~~L~sgs~D 207 (713)
++++.++|+.+ ..+..||..+.+............. +.+..-++++.++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666777653 2477788776554332211111111 11112367777787754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.4 Score=46.50 Aligned_cols=259 Identities=14% Similarity=0.080 Sum_probs=122.0
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
..|+.+..+-.+ .|.+|+.+| |++.+.+..+....... -.+.|..+.-..+ ..+-.|+++|..+. ......+...
T Consensus 206 k~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~q-G~lWiGTenGl~r~-~l~rq~Lq~~ 281 (671)
T COG3292 206 KAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQ-GELWIGTENGLWRT-RLPRQGLQIP 281 (671)
T ss_pred hhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccC-CCEEEeecccceeE-ecCCCCcccc
Confidence 455555555555 477787776 77777665322211111 1233433333322 34445555554432 2222221111
Q ss_pred -ec--cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc-eEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005123 224 -KS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD-VKSVDWHP--TKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 224 -~~--~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~-V~sl~~sp--dg~~L~sgs~Dg~I~Iw 297 (713)
.+ ..-+.|.++....+++ |-+++.++.+++-+-. ......+....+. +..++..+ .+..+-....-+.+.+-
T Consensus 282 ~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~va 359 (671)
T COG3292 282 LSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVA 359 (671)
T ss_pred ccccCCccccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEe
Confidence 11 1224566666665665 5556666666554422 2221222211111 11111111 12222222223445555
Q ss_pred ECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeec-CCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRG-HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs 374 (713)
+-.++..+.... .....|+.+++..+++ +-.++..+-+..|+.++ +..+.+..+ ..+.|..|.-.+ +++ |..|+
T Consensus 360 n~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~-dns-LWIGT 436 (671)
T COG3292 360 NGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP-DNS-LWIGT 436 (671)
T ss_pred cCCCCcEEEEeeeccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeeeecC-CCC-EEEec
Confidence 555666555432 2335577777776554 55666665577777776 333333332 346788887777 444 77788
Q ss_pred CCCcEEEEEcCCCCceEE----EecccCCCeEEEEEcCCCcEE
Q 005123 375 LDGSIFHWLVGHETPQVE----IHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~----~~~~h~~~V~~l~~spdg~~l 413 (713)
.+|.++.= .+....... ......+.|..+.+.+++.+-
T Consensus 437 s~Glvk~~-pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw 478 (671)
T COG3292 437 SGGLVKRD-PESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLW 478 (671)
T ss_pred cCCeEecC-ccccchhcccccccCcCCcchhhhhccCCCCceE
Confidence 78766432 111111100 111123457778888888543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.4 Score=50.95 Aligned_cols=222 Identities=13% Similarity=0.222 Sum_probs=111.2
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE-EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~-~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.|-..++.+.|.-++--++....|-+ -.+.. ..+..-+..|...+||.|.+.++....+..|.+++..-.-+
T Consensus 74 ~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~i 146 (1243)
T COG5290 74 KHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPI 146 (1243)
T ss_pred hhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccccc
Confidence 45666677776665544444433322 11122 22233467788999999999888777778888876321100
Q ss_pred ----e--eeeccCCCCeeEEEEec-----------------------CCCEEEEEECCCeEEEE--EcCC--------C-
Q 005123 221 ----K--ANKSAHKESVRDLSFCR-----------------------TDLKFCSCSDDTTVKVW--DFAR--------C- 260 (713)
Q Consensus 221 ----~--~~~~~~~~~V~~l~fs~-----------------------dg~~Las~s~Dg~I~iw--Dl~~--------~- 260 (713)
+ ..+... +.-..+-|-. |...|.......++..| |.+- .
T Consensus 147 se~~L~~~dl~ef-~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~p 225 (1243)
T COG5290 147 SEYHLKKSDLVEF-GKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERP 225 (1243)
T ss_pred chhhcchhHHHHh-ccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhccc
Confidence 0 000000 0111222221 11113333445566667 3210 0
Q ss_pred -eeEEEEc------cCCCce----EEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEE---ccCCCCeEEEEEc
Q 005123 261 -QEERSLT------GHGWDV----KSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSF---HGHKNMVLCVKWN 321 (713)
Q Consensus 261 -~~~~~l~------~h~~~V----~sl~~spdg~~L~sgs~Dg~-----I~IwDl~t~~~~~~~---~~h~~~I~si~fs 321 (713)
...+.+. ....++ .-++|-|.|..+++-..||. |.++.-+ |-.-..+ .+....+..++|+
T Consensus 226 rra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn 304 (1243)
T COG5290 226 RRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWN 304 (1243)
T ss_pred ccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhh
Confidence 0111111 111122 24899999999998775553 5555432 2211111 1233456667787
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
-....++++ ..+.|++|-..+..-.......-..+.-+.|+|...+.|...
T Consensus 305 ~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 305 LLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred HHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 665555544 456799998877554333333344567778888544444433
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.1 Score=45.67 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCCEEEEEECC-----------CcEEEEeCCCCceEEEEeccCCCE--EEEEEccCCCEEEEEeCC
Q 005123 155 TGRRLITGSQS-----------GEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 155 dg~~Latgs~d-----------g~V~Iwd~~t~~~~~~l~~h~~~V--~sl~~spdg~~L~sgs~D 207 (713)
++++.+.|+.+ ..+..||..+.+....-....... .+++..-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45666666643 247788877654433221111111 112221367777777754
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=2.5 Score=46.97 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.|..|..++.|..++..+.+|.+.++=.+....-..++..+..|+|=.|+-+.+ |++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss-------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS-------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC--------------------
Confidence 467788888999888888888665553333333334444444555555543332 22211
Q ss_pred cCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCce
Q 005123 352 GHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
..-.+..++|+|+. +..|+.-+.|..|+|||+.....+
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11234566788854 567778888899999998766544
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.4 Score=55.09 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=4.8
Q ss_pred CCCcccc
Q 005123 623 MAPPMQQ 629 (713)
Q Consensus 623 ~~~~~~~ 629 (713)
|+|.+|-
T Consensus 606 maPvlP~ 612 (1102)
T KOG1924|consen 606 MAPVLPF 612 (1102)
T ss_pred ccccCCC
Confidence 7777755
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.2 Score=43.49 Aligned_cols=106 Identities=7% Similarity=-0.010 Sum_probs=52.1
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCceE---EEEeccCCCE--EEEEEccCCCEEEEEeC-----CCcEEEEEcCCCc
Q 005123 155 TGRRLITGSQS-----GEFTLWNGQSFNFE---MILQAHDHAI--RSMVWSHNDNWMVSGDD-----GGAIKYWQNNMNN 219 (713)
Q Consensus 155 dg~~Latgs~d-----g~V~Iwd~~t~~~~---~~l~~h~~~V--~sl~~spdg~~L~sgs~-----DG~I~vwdl~~~~ 219 (713)
+++++++|+.+ ..+..||+.+.+.. ..+..-.... .+++. -++++.+.|+. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566677654 35667777665431 1221111111 12222 25666667664 2457778877664
Q ss_pred eeeeeccC-CCCeeEEEEecCCCEEEEEECCC----eEEEEEcCCCe
Q 005123 220 VKANKSAH-KESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQ 261 (713)
Q Consensus 220 ~~~~~~~~-~~~V~~l~fs~dg~~Las~s~Dg----~I~iwDl~~~~ 261 (713)
-...-... .......+..-++++++.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 32221111 11222222333666777776653 35678887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.59 E-value=6.3 Score=48.54 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=88.1
Q ss_pred CCCcEEEEeCCCCceEEEEeccCCCEEEEEEc--------cCCCEEEEEeCCCcEEEEEcC----CCcee-----eeecc
Q 005123 164 QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--------HNDNWMVSGDDGGAIKYWQNN----MNNVK-----ANKSA 226 (713)
Q Consensus 164 ~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~s--------pdg~~L~sgs~DG~I~vwdl~----~~~~~-----~~~~~ 226 (713)
.|+.+.+|+.++......+.+.+..|..|..- +.=++|++.+.--.|.|+-+. ++... ..+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 47789999999988888888888888877643 233455554445556665332 11111 12223
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEc----CC------Cee--------------EEEEc-cCCCceEEEEEcCC
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR------CQE--------------ERSLT-GHGWDVKSVDWHPT 281 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl----~~------~~~--------------~~~l~-~h~~~V~sl~~spd 281 (713)
....|+|+....+|+.|++|- || .+|.+ .+ ... +..+. .+.+.|..|+++..
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 456789999777887776665 44 44443 11 110 01122 45678999999988
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 005123 282 KSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t 301 (713)
-+.+.+-++.++|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999976
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.8 Score=45.25 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=7.1
Q ss_pred CCCCCCCCcCC
Q 005123 659 PNSSGPQMYPQ 669 (713)
Q Consensus 659 ~~~~~~~~~~~ 669 (713)
+--+++||||-
T Consensus 347 ~r~~~p~~~pl 357 (498)
T KOG4849|consen 347 PRHVNPQMFPL 357 (498)
T ss_pred cccCCCCCccc
Confidence 35567777774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 713 | ||||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-23 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-22 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 8e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-21 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-21 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-21 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-21 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-21 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-21 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-21 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-21 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-21 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-21 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-12 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-20 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-20 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-20 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-18 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-16 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-16 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-10 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-15 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-11 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-14 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-14 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-14 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-14 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 9e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-11 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-13 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-12 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-12 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-12 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-11 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-11 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-11 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-11 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-11 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-11 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-11 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-11 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 6e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 9e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-10 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-10 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 4e-10 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 7e-09 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 2e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-09 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-08 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 5e-08 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-07 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-07 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-06 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-06 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 7e-06 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 7e-06 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-05 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 1e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-05 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 3e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-05 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 5e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 1e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 9e-04 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-04 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 3e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 3e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 3e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 3e-04 |
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.98 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.8 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.79 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.77 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.75 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.72 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.69 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.68 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.67 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.66 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.63 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.62 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.61 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.54 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.52 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.51 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.51 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.48 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.48 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.47 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.45 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.44 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.43 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.43 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.4 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.39 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.38 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.37 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.36 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.34 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.32 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.3 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.3 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.3 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.29 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.24 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.23 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.15 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.12 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.11 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.08 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.08 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.08 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.07 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.05 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.02 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.02 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.01 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.99 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.99 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.94 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.94 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.92 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.91 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.88 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.86 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.86 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.84 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.84 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.82 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.82 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.78 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.75 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.75 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.74 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.74 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.73 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.71 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.7 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.7 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.68 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.64 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.63 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.61 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.58 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.57 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.54 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.51 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.49 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.42 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.41 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.4 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.38 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.37 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.37 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.35 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.32 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.3 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.29 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.23 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.2 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.19 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.18 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.17 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.17 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.17 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.17 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.15 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.13 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.12 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.1 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 98.06 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.06 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.05 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.04 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.03 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.97 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.87 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.87 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.86 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.83 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.82 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.78 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.71 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.7 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.64 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.64 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.63 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.63 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.6 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.56 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.55 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.53 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 97.52 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.52 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.37 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.36 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 97.33 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.32 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.31 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 97.23 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.08 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.08 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.03 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 97.02 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.92 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 96.87 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.85 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 96.8 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.8 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.78 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.76 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.75 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 96.72 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.71 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 96.6 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.59 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 96.47 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 96.42 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.41 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 96.4 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 96.4 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 96.38 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 96.36 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 96.34 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.32 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 96.29 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 96.21 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 95.93 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.83 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 95.57 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 95.43 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 95.36 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 95.3 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 95.24 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.14 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 95.01 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 94.94 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 94.72 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 94.18 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 94.16 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 93.88 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 93.56 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 93.16 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 92.05 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 91.75 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.93 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 87.47 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 87.37 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 86.44 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 84.46 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 82.69 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 80.67 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=396.57 Aligned_cols=286 Identities=22% Similarity=0.418 Sum_probs=270.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|++++++|++|+.||+|+|||+.+++.+..+.+|...|++++|++++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.+.+..+.+|...|.+++|++++++|++++.|++|++||++++..+..+.+|...|.+++|++++++|++++.|++|++|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspd--------------------g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V 357 (713)
|+++++....+..|...|.+++|+++ +.+|++|+.|++|+|||+++++++..+.+|...|
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE
Confidence 99999999999999999999999986 6789999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
++++|++ ++.+|++++.||.|+|||+.+... ...+..|...|++++|++++.++++ .|++|+||++
T Consensus 342 ~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 342 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECS-SSSCEEEEETTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 889999999999999999977654 4455689999999999999966654 9999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=376.38 Aligned_cols=288 Identities=22% Similarity=0.362 Sum_probs=265.9
Q ss_pred EEEeeCCCCCceEEEEEccC----CCEEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 136 VHTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd----g~~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
+.+.+.+|.+.|++|+|+++ +++|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34567899999999999975 67999999999999999877654 4468899999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
|+|||+++++.+..+..+...+.+++|++++++|++++.|+.|++||+++++....+..+...|.+++|++++++|++++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999999999988888999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
.|+.|+|||+++++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.+|...|.+++|++ ++.+
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~ 262 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTH 262 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSE
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
|++++.|++|+|||+++... +..+..|...|++++|++++.+|++ .|++|+|||.
T Consensus 263 l~s~s~D~~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCEE-EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999987664 4455679999999999999977654 9999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=373.06 Aligned_cols=286 Identities=23% Similarity=0.371 Sum_probs=263.2
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...++.+|.+.|++++|++|+++|++|+.||.|+|||..+++.+..+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 216 NMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 216 ~~~----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.+. .....+..|...|.++.|++++. |++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 875 34556778999999999998764 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~ 369 (713)
++|++||+++++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.. +...|++++|++ ++.+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 284 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCE
Confidence 9999999999999999999999999999999999999999999999999999988877753 235799999999 8999
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
|++++.||.|++||+.+.. ....+.+|.+.|++++|++++.+|++ .|++|+|||
T Consensus 285 l~~g~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999997765 44556789999999999999976654 899999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=367.13 Aligned_cols=289 Identities=24% Similarity=0.392 Sum_probs=263.3
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+++.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+..|...|.+++|++++++|++|+.|+.|+|||++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I 294 (713)
+++.+..+..|...|++++|++++++|++++.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999876 55677889999999999999 67899999999999
Q ss_pred EEEECCCCceEEEEc-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~-~h~~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+|||+++.+....+. .+...+..++|++ ++.+|++++.|++|+|||+++++++.++.+|...|++++|++ ++.+|+
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~ 244 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEE
Confidence 999998877665554 4667899999987 778999999999999999999999999999999999999999 788999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--EEE-EeCCcEEEEecCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~la-S~Dg~v~iWd~~~ 427 (713)
+++.||+|+|||+++.+ ....+..|...+++++|++++. +++ +.|+.+.+|++..
T Consensus 245 s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEETTSCEEEEETTTCC-EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEcCCCeEEEEECCCCc-eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 99999999999998765 4455567889999999999873 354 4889999998854
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=368.37 Aligned_cols=287 Identities=25% Similarity=0.405 Sum_probs=262.7
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
....+.+|.+.|+|++|++++++||+|+.||+|+|||..+++....+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC--CCCEEEE
Q 005123 216 NMN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVS 287 (713)
Q Consensus 216 ~~~------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp--dg~~L~s 287 (713)
... .....+..|...|.+++|++++..|++++.|++|++||+++++.+..+.+|...|.+++|++ ++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 653 23455667999999999999999999999999999999999999999999999999999987 5689999
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPF 365 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~ 365 (713)
|+.|++|++||+++++++..+..|...|++++|++++++|++++.|++|+|||+++.+.+..+..+ ...+++++|++
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~- 294 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-
Confidence 999999999999999999999999999999999999999999999999999999998887777644 34789999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++.+|++++.|+.|+|||+.++.. +..+.+|.+.|++++|++++.+|++ .|++|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCce-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999977664 4556689999999999999977754 899999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=356.32 Aligned_cols=290 Identities=26% Similarity=0.452 Sum_probs=265.8
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+..++.+|.+.|++++|++++++|++++.||.|+|||..+++....+..|...|.+++|++++++|++++.|+.|+|||+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+..|...|.+++|++++++|++++.|+.|+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE--EEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT--ALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~--sl~fsp~~~~~las 372 (713)
+||+++++.+..+. .+...+.+++|++++++|++++.|+.|+|||+++++.+..+..|...+. ...++..++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999998887764 4566799999999999999999999999999999999999988876533 33455447889999
Q ss_pred EECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE----eCCcEEEEecC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS----NDHTTKFWCRN 426 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS----~Dg~v~iWd~~ 426 (713)
++.||.|++||+.+.. .+..+.+|...|.+++|++++.++++ .|++|+||+.+
T Consensus 255 g~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCch-hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999997765 45666789999999999999988875 49999999875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=363.30 Aligned_cols=293 Identities=22% Similarity=0.446 Sum_probs=251.3
Q ss_pred EEeeCCCCC-ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE--E-EeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 137 HTSLNKNRC-SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM--I-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 137 ~~~l~~H~~-~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~--~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..++.+|.+ .|++++|++++++||+|+.|+.|+|||+.+.+... . ..+|...|++++|++++++|++++.|++|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 456788988 99999999999999999999999999998876432 2 2579999999999999999999999999999
Q ss_pred EEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC---eeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 213 WQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 213 wdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
||++.+. .+..+.+|...|.+++|++++++|++++.|++|++||+++. +.+..+..|...|.+++|++++++|++
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 9998764 56778899999999999999999999999999999999765 345677889999999999999999999
Q ss_pred EeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---------------CeeEEEe
Q 005123 288 GGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---------------MKELESF 350 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t---------------~~~l~~~ 350 (713)
++.|++|++||+++++ ++..+.+|...|++++|++++++|++++.|++|+|||+.. .+++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999998875 4567889999999999999999999999999999999632 2334455
Q ss_pred ec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc--------eEEEecccCCCeEEEEEcCCC-cEEEE--eCC
Q 005123 351 RG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIG-YLLCS--NDH 418 (713)
Q Consensus 351 ~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg-~~laS--~Dg 418 (713)
.+ |...|.+++|++ ++.+|++++.|+.|++|+.+.... ......+|...|++|+|+|++ .+|++ .|+
T Consensus 248 ~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp CSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred cCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 54 888999999999 788999999999999999865431 122345799999999999987 46654 899
Q ss_pred cEEEEecCCCCC
Q 005123 419 TTKFWCRNRPGD 430 (713)
Q Consensus 419 ~v~iWd~~~~~~ 430 (713)
+|+||++.....
T Consensus 327 ~v~~W~~~~~~~ 338 (345)
T 3fm0_A 327 EVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECC---
T ss_pred cEEEEEecCCCC
Confidence 999999866554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=375.30 Aligned_cols=292 Identities=22% Similarity=0.385 Sum_probs=262.3
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
....+.+|.+.|++++|++++++|++|+.|++|+|||..+++....+..|...|.+++|++++++|++++.|+.|+|||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc-------eeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEE-----ccCCCceEEEEEcC-C
Q 005123 216 NMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHP-T 281 (713)
Q Consensus 216 ~~~~-------~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l-----~~h~~~V~sl~~sp-d 281 (713)
.+.. ....+.+|...|.++.|++++ ..|++++.|++|++||+++++.+..+ .+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 7532 345567899999999999864 57999999999999999999888877 57889999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECC-CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC-----
Q 005123 282 KSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK----- 355 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~----- 355 (713)
+++|++|+.|++|+|||++ ..+.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8999999999999999998 4577888999999999999999999999999999999999999999888765432
Q ss_pred --CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe---cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 356 --DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 356 --~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.|++++|++ ++++|++|+.||.|+|||+........+. ..|.+.|++++|++++.+|++ .|++|+||++...
T Consensus 298 ~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 298 LPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred cCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 489999999 89999999999999999997776544432 579999999999999988876 8999999998654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=365.02 Aligned_cols=283 Identities=21% Similarity=0.300 Sum_probs=239.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCC-----------CCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-----------t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
.|...|.+++|++||++|++++ |+++++||.. ..........++..|.+++|+++ +.|++++.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEE
Confidence 4667799999999999998887 6678888622 11122233346778999999997 578899999999
Q ss_pred EEEEcCCCceeee----eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC-CEE
Q 005123 211 KYWQNNMNNVKAN----KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLL 285 (713)
Q Consensus 211 ~vwdl~~~~~~~~----~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg-~~L 285 (713)
+|||+++++.... ..+|...|++++|++++++|++++.|++|++||+++++.+..+.+|...|.+++|++++ .+|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999998865433 34799999999999999999999999999999999999999999999999999999987 478
Q ss_pred EEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++++.|++|+|||+++++.+..+. .+...+++++|++ ++++|++|+.|++|+|||+++++.+.++.+|...|++++|
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999999999999887764 3556799999998 5678899999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEE--EeCCcEEEEecCCC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLC--SNDHTTKFWCRNRP 428 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~la--S~Dg~v~iWd~~~~ 428 (713)
++++.++|++++.|++|+|||++++. + ....+|.+.|++|+|++++ .+++ +.|++|++|++...
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~-~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE-L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE-E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc-E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99656789999999999999997764 3 3456899999999999987 4554 48999999998654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=353.55 Aligned_cols=289 Identities=19% Similarity=0.309 Sum_probs=256.9
Q ss_pred EEEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCC-----CceEEEEeccCCCEEEEEEccCCCEEEEEeCCC
Q 005123 135 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t-----~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG 208 (713)
.+..+|.+|.+.|++++|++++ ++|++|+.|++|++||+.+ +..+..+.+|...|.+++|++++++|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456899999999999999965 8999999999999999764 234677899999999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC------C
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------K 282 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd------g 282 (713)
+|+|||+++++.+..+.+|...|.+++|++++.+|++++.|++|++||++. +.+..+.+|...|.+++|++. +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999964 567788899999999999984 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.+|++++.|+.|++||+++.+....+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.. ...|.+++|
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~ 245 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999988885 468999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEe-------cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
++ ++.+|++++.+ .|++|+++.......+. ..|...|.+++|++|+.+|++ .|+.|+||++..
T Consensus 246 sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 99 78888888765 59999997654333321 235678999999999988765 899999999853
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=386.95 Aligned_cols=340 Identities=18% Similarity=0.336 Sum_probs=275.2
Q ss_pred hhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeee--------E-------EEEeeCCCCCceEEEEE
Q 005123 88 VVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAK--------F-------VHTSLNKNRCSINRVLW 152 (713)
Q Consensus 88 ~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~-------~~~~l~~H~~~V~~v~~ 152 (713)
......+|+|+......... .....+...+..++|+.+........ + ....+.+|...|++++|
T Consensus 77 g~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 77 GDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp EETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred EeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEE
Confidence 33456899999854332211 11122334556677776654433211 0 11357899999999999
Q ss_pred ccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec------
Q 005123 153 TPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------ 225 (713)
Q Consensus 153 spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~------ 225 (713)
++++. +|++|+.|++|+|||..+++....+.+|...|++++|++|+++|++++.|++|+|||+.+++.+..+.
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~ 235 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence 99987 69999999999999999999999999999999999999999999999999999999999988877763
Q ss_pred -cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE----------------------------------------
Q 005123 226 -AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER---------------------------------------- 264 (713)
Q Consensus 226 -~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~---------------------------------------- 264 (713)
.|...|.+++|++++++|++++.|++|++||+++++.+.
T Consensus 236 ~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315 (611)
T ss_dssp CSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred cccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC
Confidence 699999999999999999999999999999998776543
Q ss_pred ---EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-c-------------------------------
Q 005123 265 ---SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H------------------------------- 309 (713)
Q Consensus 265 ---~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~------------------------------- 309 (713)
.+.+|...|.+++|++++++|++++.|++|++||+++++....+ .
T Consensus 316 ~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~ 395 (611)
T 1nr0_A 316 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 395 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeec
Confidence 33468889999999999999999999999999999876543221 0
Q ss_pred --------------------------------------------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 310 --------------------------------------------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 310 --------------------------------------------------~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
.+...+.+++|++||++|++|+.|++|+||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 012346789999999999999999999999
Q ss_pred ECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE--EecccCCCeEEEEEcCCCcEEEE
Q 005123 340 DIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE--IHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 340 Dl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~--~~~~h~~~V~~l~~spdg~~laS 415 (713)
|+.+++. +.. ..|...|++++|+| ++++|++++.|++|++||+.+...... ....|...|++++|++|+.+|++
T Consensus 476 d~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~las 553 (611)
T 1nr0_A 476 KLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553 (611)
T ss_dssp EEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred EccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEE
Confidence 9987653 334 67999999999999 899999999999999999976333322 23349999999999999988865
Q ss_pred --eCCcEEEEecCCCCC
Q 005123 416 --NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 --~Dg~v~iWd~~~~~~ 430 (713)
.|++|+||+++....
T Consensus 554 gs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 554 GSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EETTSCEEEEETTCTTS
T ss_pred EECCCcEEEEECCCccc
Confidence 899999999976543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=366.12 Aligned_cols=289 Identities=19% Similarity=0.288 Sum_probs=239.9
Q ss_pred CCCCCceEEEEEccCCCEEEEEEC------CCcEEEEeCCCCce----EEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQ------SGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~------dg~V~Iwd~~t~~~----~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
..|...|++|+|+|||++||+|+. |+.|++|+..++.. ......|...|++++|+++++ +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 469999999999999999999997 77899999776542 344567899999999999875 5567889999
Q ss_pred EEEEcCCCceee----eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EE
Q 005123 211 KYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LL 285 (713)
Q Consensus 211 ~vwdl~~~~~~~----~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L 285 (713)
+|||+.+++... ....|...|++++|++++++|++++.|++|++||+++++.+..+.+|...|++++|++++. +|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998876433 2347889999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCcEEEEECCCCceEEEE--ccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~--~~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
++++.|++|+|||+++++.+..+ ..+...+++++|+|+ +.+|++|+.|+.|+|||+++++.+..+..|...|++++|
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 99999999999999998876654 346778999999996 578899999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-CCcEEEE--eCCcEEEEecCCCCCcc
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~laS--~Dg~v~iWd~~~~~~~~ 432 (713)
+++++++|++++.|++|+|||++++.. +.. .+|.+.|++|+|+| ++.+|++ .|++|++|++...++..
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~-~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEV-FRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEE-EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcE-eEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 996668999999999999999977653 333 47999999999998 7776654 89999999997665443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=359.47 Aligned_cols=282 Identities=22% Similarity=0.397 Sum_probs=250.7
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC------------------CEEEEEEccCCCEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH------------------AIRSMVWSHNDNWMVS 203 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~------------------~V~sl~~spdg~~L~s 203 (713)
+|.+.|+|++|++||++||+|+ ++.++||++.+++.+..+..|.. .|++++|++++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 68999999999998888765532 4999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TK 282 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg 282 (713)
++.|+.|+|||+++++.+..+.+|...|.+++|++++++|++++.|++|++||+++++....+. +...+.+++|++ ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998887776 567899999999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEE-------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSF-------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------- 344 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~-------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----------- 344 (713)
++|++++.|+.|+|||+++++.+..+ .+|...|++++|++++++|++++.|+.|+|||+++.
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 99999999999999999999887776 568899999999999999999999999999999753
Q ss_pred -eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC------CCcEEEE--
Q 005123 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP------IGYLLCS-- 415 (713)
Q Consensus 345 -~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp------dg~~laS-- 415 (713)
.+...+.+|...|.+++|++ ++.+|++++.|+.|++||++++.. +..+.+|...|.+++|++ ++.++++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 34567788999999999999 789999999999999999987764 455668999999999986 5655654
Q ss_pred eCCcEEEEecCC
Q 005123 416 NDHTTKFWCRNR 427 (713)
Q Consensus 416 ~Dg~v~iWd~~~ 427 (713)
.|++|+||++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 899999999854
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=353.60 Aligned_cols=287 Identities=20% Similarity=0.353 Sum_probs=238.8
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEE-ec-cCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMIL-QA-HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l-~~-h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
...+.+|.+.|++++|+++ +||+|+.|+.|+|||+.+. +....+ .. |...|++++|++++++|++++.|++|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4567899999999999987 9999999999999999875 445556 34 9999999999999999999999999999
Q ss_pred EEcCC-------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC----CeeEEEEccCCCceEEEEEcCC
Q 005123 213 WQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 213 wdl~~-------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~----~~~~~~l~~h~~~V~sl~~spd 281 (713)
||++. .+....+.+|...|.+++|++++++|++++.|++|++||++. .+.+..+.+|...|.+++|+++
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 99853 345667788999999999999999999999999999999943 2567788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC--ceEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC--------eeEEE
Q 005123 282 KSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAM--------KELES 349 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~--~~~~~~~~h~~~I~si~fspd--g~~Latgs~Dg~I~IwDl~t~--------~~l~~ 349 (713)
+++|++++.|++|+|||++++ +++..+.+|...|.+++|+++ +.+|++++.|++|+|||+++. ..+..
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence 999999999999999999876 678889999999999999998 778999999999999999754 34455
Q ss_pred eec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--ceEEEecccCC-CeEEEEEcC--CCcEEE--EeCCcEE
Q 005123 350 FRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQVEIHNVHDN-TVWDLAWHP--IGYLLC--SNDHTTK 421 (713)
Q Consensus 350 ~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--~~~~~~~~h~~-~V~~l~~sp--dg~~la--S~Dg~v~ 421 (713)
+.. |...|++++|++ + .+|++++.||.|+|||+.++. ........|.. .|++++|++ ++.+|+ +.|++|+
T Consensus 245 ~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp CCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred cccccccceEEEEEcC-C-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 554 889999999996 3 489999999999999987653 22233456776 899999999 565554 4999999
Q ss_pred EEecCC
Q 005123 422 FWCRNR 427 (713)
Q Consensus 422 iWd~~~ 427 (713)
||+++.
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999854
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=346.84 Aligned_cols=287 Identities=17% Similarity=0.287 Sum_probs=244.6
Q ss_pred EEEeeCCCCCceEEEEE-----cc-CCCEEEEEECCCcEEEEeCCCC-------ceEEEEeccCCCEEEEEEccCCCEEE
Q 005123 136 VHTSLNKNRCSINRVLW-----TP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMV 202 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~-----sp-dg~~Latgs~dg~V~Iwd~~t~-------~~~~~l~~h~~~V~sl~~spdg~~L~ 202 (713)
....|.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+. .....+.+|...|.+++|++++.+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 34578899999999999 76 8999999999999999998653 35677889999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEEEEEc
Q 005123 203 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWH 279 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~sl~~s 279 (713)
+++.|++|+|||+++++.+..+..|...|.+++|++++++|++++.|++|++||+.... ...+. .|...|.+++|+
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999997443 33332 688899999999
Q ss_pred CCC----------CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eeEE
Q 005123 280 PTK----------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELE 348 (713)
Q Consensus 280 pdg----------~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-~~l~ 348 (713)
+++ .+|++++.|+.|++||. +.+....+..|...|++++|++++++|++++.|+.|+|||+++. ....
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 986 78999999999999994 56777788899999999999999999999999999999999543 3344
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE-EEe-----------cccCCCeEEEEEcCCCcEEEE-
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EIH-----------NVHDNTVWDLAWHPIGYLLCS- 415 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~-~~~-----------~~h~~~V~~l~~spdg~~laS- 415 (713)
.+. +...|.+++|++ ++.+|++ +.|+.|++||+.+..... ..+ .+|...|++++|++++.+|++
T Consensus 251 ~~~-~~~~v~~v~~sp-~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EFD-AGSTINQIAFNP-KLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EEE-CSSCEEEEEECS-SSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred eec-CCCcEEEEEECC-CCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 443 556799999999 6777665 457889999997655332 111 157788999999999976654
Q ss_pred -eCCcEEEEecCC
Q 005123 416 -NDHTTKFWCRNR 427 (713)
Q Consensus 416 -~Dg~v~iWd~~~ 427 (713)
.|++|++|+++.
T Consensus 328 ~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 328 FTDGVIRTFSFET 340 (343)
T ss_dssp ETTSEEEEEEEEE
T ss_pred cCCceEEEEEEEc
Confidence 899999999753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=344.93 Aligned_cols=246 Identities=17% Similarity=0.284 Sum_probs=238.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|...|.+++|++++.+|++++.|+.|+|||+.+++.+..+..|...+.+++|++++++|++++.||.|++||+++
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
++....+..+...|.+++|++++++|++++.|+.|++||+++++.+..+.+|...|.+++|++++++|++++.|++|+||
T Consensus 154 ~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 99888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
|+++++.+.++.+|...|.+++|++++++|++++.|++|+|||+++++++.++..|...|++++|++ ++.+|++++.||
T Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~ 312 (321)
T 3ow8_A 234 DVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQ 312 (321)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTC
T ss_pred ECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred cEEEEEc
Q 005123 378 SIFHWLV 384 (713)
Q Consensus 378 ~I~Iwd~ 384 (713)
.|+|||+
T Consensus 313 ~i~vwd~ 319 (321)
T 3ow8_A 313 EIHIYDC 319 (321)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 9999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=338.00 Aligned_cols=290 Identities=21% Similarity=0.350 Sum_probs=253.7
Q ss_pred EEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCc-----eEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
+..+|++|++.|++|+|+|+ +++||||+.|++|+|||+.+.+ ....+.+|...|.+++|++++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45679999999999999997 6899999999999999987643 45678899999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE-EEEccCCCceEEEEEcCCC--CEEE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTK--SLLV 286 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~-~~l~~h~~~V~sl~~spdg--~~L~ 286 (713)
|++|+............+...+..+.+++++.+|++++.|+.+++||+...... ..+..|...|.+++|++++ .+++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888999999999999999999999999999999776543 3456788999999998754 5788
Q ss_pred EEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++.+.+..+.. ...|.+++|++ +
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~ 267 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP-N 267 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECS-S
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999988874 46799999998 5
Q ss_pred CCEEEEEECCCcEEEEEcCCCCceEEE--------ecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 367 EEYFVSGSLDGSIFHWLVGHETPQVEI--------HNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~~~~~~--------~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
+. +++++.|+.|+|||++.......+ ...|...|++++|++++.+|++ .|+.|+|||++..
T Consensus 268 ~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 268 RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 54 556667999999999765433322 3468889999999999977764 8999999998653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=364.17 Aligned_cols=323 Identities=25% Similarity=0.457 Sum_probs=275.1
Q ss_pred ceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCcee------------eeEEEEeeCCCCCceEEEEEccCCC
Q 005123 90 RYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA------------AKFVHTSLNKNRCSINRVLWTPTGR 157 (713)
Q Consensus 90 ~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------~~~~~~~l~~H~~~V~~v~~spdg~ 157 (713)
....+++|+.+.+....+.. +...+..++|..+....+. .......+.+|...|++++|+++++
T Consensus 241 ~d~~i~~w~~~~~~~~~~~~----~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 241 DDKTVKLWNRNGQLLQTLTG----HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp TTSCEEEECTTSCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCCEEEEEec----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCC
Confidence 44579999876543333222 2233344455444332221 1112356789999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
+|++++.|+.|++||.... .+..+..|...|.+++|++++++|++++.|+.|++||. +++.+..+..|...|++++|+
T Consensus 317 ~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp EEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEEC
Confidence 9999999999999997654 56678899999999999999999999999999999995 566777788999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+++++|++++.|+.|++||. +++.+..+.+|...|++++|++++++|++++.|++|++||. +++.+..+..|...|++
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 99999999999999999995 56778888999999999999999999999999999999996 57788889999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
++|++++++|++++.|+.|+|||. +++.+..+.+|...|++++|++ ++++|++++.||.|+|||.. ...+..+.+|
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h 548 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGH 548 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--SCEEEEEECC
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCC--CCEEEEEcCC
Confidence 999999999999999999999995 5888999999999999999999 78999999999999999963 3456667789
Q ss_pred CCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 398 DNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
.+.|++++|++|+.+|++ .|++|+|||
T Consensus 549 ~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999976654 899999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=371.96 Aligned_cols=287 Identities=20% Similarity=0.350 Sum_probs=254.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~v 212 (713)
.+.+|.+.|++++|+|||++||+|+.|++|+|||+.++ .....+..|.+.|.+++|++|+++|++++.+ +.|++
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 46789999999999999999999999999999998754 3456788999999999999999999988865 36777
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
|| +++....+.+|...|++++|++++. .|++++.|++|++||..+.+.+..+.+|...|.+++|+|++++|++++.|
T Consensus 134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 76 5666677889999999999999986 59999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE---------------
Q 005123 292 SLVKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--------------- 349 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~--------------- 349 (713)
++|+|||+++++.+..+. +|...|.+++|++++++|++++.|++|+|||+++++.+.+
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999999999999888874 6999999999999999999999999999999998765443
Q ss_pred ----------------------------eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe
Q 005123 350 ----------------------------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (713)
Q Consensus 350 ----------------------------~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V 401 (713)
+.+|...|++++|++ ++++|++++.|++|++||+.++.........|...|
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 347889999999999 899999999999999999987764443336799999
Q ss_pred EEEEEcCCCcEEE-EeCCcEEEEecCCC
Q 005123 402 WDLAWHPIGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 402 ~~l~~spdg~~la-S~Dg~v~iWd~~~~ 428 (713)
.+++|++++.+++ +.|+++++|++...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGS 398 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCc
Confidence 9999998887664 49999999998654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=338.05 Aligned_cols=291 Identities=15% Similarity=0.232 Sum_probs=263.3
Q ss_pred eEEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
......+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+..|...|.+++|++++++|++++.||.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCe-----------eEEEEccCCC--ceEE
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQ-----------EERSLTGHGW--DVKS 275 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~-----------~~~~l~~h~~--~V~s 275 (713)
|+.+++.+..+. +...|.+++|++++++|++++.+ +.|++||+.+.. .+..+..+.. .+.+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999999888876 88899999999999999999999 999999986543 2334445555 8999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 276 VDWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
++|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence 99999999999999999999999998 78888899999999999999999999999999999999999999988888 78
Q ss_pred CCeEEEEEeCCCCCEEEEEECCC--------------cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDG--------------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH 418 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG--------------~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg 418 (713)
..+.+++|++ ++.++++++.++ .|++||+.+... ...+..|...|++++|++++.+|++ .|+
T Consensus 260 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 260 CPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp SCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc-hhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 8899999999 789999999888 899999977764 4555679999999999999987765 899
Q ss_pred cEEEEecCCC
Q 005123 419 TTKFWCRNRP 428 (713)
Q Consensus 419 ~v~iWd~~~~ 428 (713)
.|+||+++..
T Consensus 338 ~v~iw~~~~~ 347 (369)
T 3zwl_B 338 FIRLHHFEKS 347 (369)
T ss_dssp EEEEEEECHH
T ss_pred eEEEEECccc
Confidence 9999999653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=356.50 Aligned_cols=246 Identities=27% Similarity=0.510 Sum_probs=236.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|.+.|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||++++
T Consensus 145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-----------------
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----------------- 281 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd----------------- 281 (713)
..+..+..|...|.++.|++++.+|++++.|++|++||+.+++....+..|...|.+++|+++
T Consensus 225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (410)
T 1vyh_C 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304 (410)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 282 ---KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 282 ---g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+.+|++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+.+|...|+
T Consensus 305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+++|++ ++.+|++|+.||+|+||+++
T Consensus 385 ~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 385 SLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 999999 78899999999999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=346.98 Aligned_cols=288 Identities=17% Similarity=0.231 Sum_probs=257.0
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc------eEEEEeccCCCEEEEEEccC----C---CEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHN----D---NWMV 202 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~------~~~~l~~h~~~V~sl~~spd----g---~~L~ 202 (713)
....+.+|++.|++++|++ ++|++|+.||.|+|||+.+.+ .+..+..|...|++++|+++ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4567889999999999998 899999999999999999987 78889999999999999999 9 9999
Q ss_pred EEeCCCcEEEEEcCCCce-----eeeeccC-----CCCeeEEEEe----cCCCE-EEEEECCCeEEEEEcCC------Ce
Q 005123 203 SGDDGGAIKYWQNNMNNV-----KANKSAH-----KESVRDLSFC----RTDLK-FCSCSDDTTVKVWDFAR------CQ 261 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~-----~~~~~~~-----~~~V~~l~fs----~dg~~-Las~s~Dg~I~iwDl~~------~~ 261 (713)
+++.||.|++||+.+++. ...+..| ...|.+++|+ +++++ |++++.|+.|++||+++ .+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999998876 7777778 5899999999 99999 99999999999999988 55
Q ss_pred eEE-----EE-------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc---C---CCCeEEEEEcCC
Q 005123 262 EER-----SL-------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---H---KNMVLCVKWNQN 323 (713)
Q Consensus 262 ~~~-----~l-------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~---h---~~~I~si~fspd 323 (713)
.+. .+ ..|...|.+++|++++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 555 66 4488899999999999 999999999999999999999999998 8 999999999999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeEEEeec-------------CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 324 GNWVLTASKD---QIIKLYDIRAMKELESFRG-------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 324 g~~Latgs~D---g~I~IwDl~t~~~l~~~~~-------------h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+++|++++.| +.|++||+++++.+..+.. |...|.+++|++ ++++|++++.||.|+|||+++.
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999 9999999999999999998 999999999999 7899999999999999999877
Q ss_pred CceEEEec-----cc---------------CCCeEEEEEcCCC----------cEEEE--eCCcEEEEecCC
Q 005123 388 TPQVEIHN-----VH---------------DNTVWDLAWHPIG----------YLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 388 ~~~~~~~~-----~h---------------~~~V~~l~~spdg----------~~laS--~Dg~v~iWd~~~ 427 (713)
.....+.. .| ...|++++|++++ .++++ .|+.|+||+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 65444431 56 8999999999997 45543 899999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=330.08 Aligned_cols=281 Identities=17% Similarity=0.298 Sum_probs=252.7
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce---EEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~---~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+|.+.|++++|++++++|++++ ||.|+|||+.+.+. ...+. .|...|.+++|++++++|++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3447999999999999999999999 99999999987643 33333 789999999999999999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
|+++++ ....+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 999887 566677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
+.|++||+++++.+..+. +...+.+++|++++++|++++.|+.|++||+++.+.. .+..|...|.+++|++ ++++|+
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~ 281 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFV 281 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC-CCCEEE
Confidence 999999999998887775 7788999999999999999999999999999987754 5677999999999999 789999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
+++.||.|++||+.+.... ....|...|.+++|++++.++++ .|+.|++|++
T Consensus 282 ~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999877654 33457889999999999977654 8999999986
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=325.24 Aligned_cols=285 Identities=18% Similarity=0.305 Sum_probs=256.2
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.....+.+|.+.|++++| +++++|++++.||.|+|||+.+.+....+..|...|.+++|++++++|++++.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 445678999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC---ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC-CCCEEEEEeC
Q 005123 215 NNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 290 (713)
Q Consensus 215 l~~~---~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~ 290 (713)
+... +....+..|...|.+++| ++++|++++.|+.|++|| ..+.+..+..|...|.+++|++ ++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 8764 456677889999999999 678999999999999999 6678888889999999999998 8999999999
Q ss_pred CCcEEEEECCCCceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 291 DSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|+.|++|| ..+.+..+.. +...|.+++|++++. |++++.|+.|++||+++++.+..+..|...|++++|++ ++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-C
Confidence 99999999 4566777776 889999999999988 99999999999999999999999999999999999999 55 5
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
|++++.||.|++||+++.. ....+..|...|++++|++++.++++ .|+.|+||+++....
T Consensus 239 l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGS-LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEEETTSEEEEECTTTCC-EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred EEEEecCCEEEEEECCCCc-eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 8999999999999998776 44555678889999999999977754 999999999865443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=338.93 Aligned_cols=286 Identities=16% Similarity=0.212 Sum_probs=251.3
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
..|.+.|++++|++++++|++++.|+.|+|||+.+++ .+..+..|...|++++|++++++|++++.||.|++||++++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4589999999999999999999999999999999887 88889999999999999999999999999999999999888
Q ss_pred ceeee--eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee---E-EEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 219 NVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---E-RSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 219 ~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~---~-~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+.... +..|...|.+++|++++++|++++.|+.|++||++..+. . .....|...|.+++|++++++|++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 65443 366889999999999999999999999999999987652 2 33356789999999999999999999999
Q ss_pred cEEEEECC------------------CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 293 LVKLWDAK------------------SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 293 ~I~IwDl~------------------t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.|++||++ +++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 99999954 678888888899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC--CC-------------------------------ce-------EEEe
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH--ET-------------------------------PQ-------VEIH 394 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~--~~-------------------------------~~-------~~~~ 394 (713)
..|.+++|++ ++.+|+++ .|+.|++|+++. +. .. ..+.
T Consensus 245 ~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 9999999999 67777777 999999999976 21 00 2223
Q ss_pred cccCCCeEEEEEc-CCC---cEEEE--eCCcEEEEecCCC
Q 005123 395 NVHDNTVWDLAWH-PIG---YLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 395 ~~h~~~V~~l~~s-pdg---~~laS--~Dg~v~iWd~~~~ 428 (713)
.+|...|++++|+ +++ .++++ .|+.|+||+++..
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 4899999999976 665 66654 8999999998543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=367.24 Aligned_cols=289 Identities=20% Similarity=0.329 Sum_probs=250.3
Q ss_pred EEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCC-----ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~-----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+. .....+.+|...|++++|++++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445788999999999999875 79999999999999998763 346778999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE---ccCCCceEEEEEcCCC--CE
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTK--SL 284 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l---~~h~~~V~sl~~spdg--~~ 284 (713)
|+|||+.++.....+..|...|.+++|++++++|++++.|++|+|||+......... .+|...|.+++|++++ .+
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999998765443332 3588889999999976 58
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
|++++.|++|+|||+++++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+. +...|.+++|++
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp 612 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSP 612 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999988876 456799999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCceEEEecc------------------cCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------------HDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~------------------h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
++.+|++++ |+.|+|||+++......+... +...|++++|++++.+|++ .|++|+||+
T Consensus 613 -~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 613 -NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp -SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 677777665 567999999876544333211 1124789999999988865 899999999
Q ss_pred cCC
Q 005123 425 RNR 427 (713)
Q Consensus 425 ~~~ 427 (713)
+.+
T Consensus 691 i~~ 693 (694)
T 3dm0_A 691 IGR 693 (694)
T ss_dssp C--
T ss_pred ccC
Confidence 854
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=339.48 Aligned_cols=287 Identities=19% Similarity=0.313 Sum_probs=252.0
Q ss_pred EEeeCCCCCceEEEEEccC----CCEEEEEECCCcEEEEeCCCCceEEEEec-----cCCCEEEEEEccC----CCEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQA-----HDHAIRSMVWSHN----DNWMVS 203 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spd----g~~Latgs~dg~V~Iwd~~t~~~~~~l~~-----h~~~V~sl~~spd----g~~L~s 203 (713)
.....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+++ +++|++
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3556799999999999984 55677777788999999998887777664 4578999999999 669999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEE---ccCCCceEEEEEc
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWH 279 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l---~~h~~~V~sl~~s 279 (713)
++.||.|+|||+.+++.+..+..|...|.+++|++ ++++|++++.|++|++||+++++.+..+ ..|...|.+++|+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 99999999999999999999999999999999999 8999999999999999999999998888 6799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEc----------------------------cCCCCeEEEEEcCCCCEEEEEE
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFH----------------------------GHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~----------------------------~h~~~I~si~fspdg~~Latgs 331 (713)
+++++|++++.|+.|++||+++++.+..+. .|...|.+++|+ +++|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 999999999999999999999876543333 388999999998 77999999
Q ss_pred CCCeEEEEECCCCee--------------EEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCc---eEE
Q 005123 332 KDQIIKLYDIRAMKE--------------LESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP---QVE 392 (713)
Q Consensus 332 ~Dg~I~IwDl~t~~~--------------l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~---~~~ 392 (713)
.|+.|++||+++.+. +..+..|...|++++|++ + +.+|++++.||.|++||+.+... ...
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 999999999987643 788889999999999999 6 89999999999999999987653 333
Q ss_pred Eeccc--CCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 393 IHNVH--DNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 393 ~~~~h--~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
.+..| ...|++++|++++.+|++ .|+.|+|||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 45556 789999999999977764 89999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=340.23 Aligned_cols=286 Identities=16% Similarity=0.213 Sum_probs=243.0
Q ss_pred EEEeeCCCCCceEEEEEccCC-CEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg-~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~sp-dg~~L~sgs~DG~I~ 211 (713)
+...+.+|.+.|++++|++++ ++|++|+.||.|+|||+.+.+....+. +|...|.+++|++ ++++|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 345778999999999999999 999999999999999999988887776 5999999999999 679999999999999
Q ss_pred EEEcCCCceeeeecc---CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEE
Q 005123 212 YWQNNMNNVKANKSA---HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVS 287 (713)
Q Consensus 212 vwdl~~~~~~~~~~~---~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~s 287 (713)
+||+++.. ...+.. +...|.+++|++++++|++++.|+.|++||+ +++.+..+..|...|.+++|+++++ +|++
T Consensus 145 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred EEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence 99999644 333333 3478999999999999999999999999999 5678888889999999999999998 9999
Q ss_pred EeCCCcEEEEECCC----CceEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCC--------
Q 005123 288 GGKDSLVKLWDAKS----GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------- 354 (713)
Q Consensus 288 gs~Dg~I~IwDl~t----~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-------- 354 (713)
++.|+.|++||+++ ++.+..+ .|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 99999999999998 5566666 5899999999999 99999999999999999999888776666543
Q ss_pred ---------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc-cCCCeEEEEEcCCCcEEEE-eCCcEEEE
Q 005123 355 ---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLCS-NDHTTKFW 423 (713)
Q Consensus 355 ---------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~laS-~Dg~v~iW 423 (713)
..+..++|++ ++.+ +++.|+.|+|||+.++.....+... |...+.+++|++++.+|++ .|+.|+||
T Consensus 302 ~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw 378 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIW 378 (383)
T ss_dssp CCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEE
T ss_pred ceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEE
Confidence 2344455565 3443 6678999999999887755444422 5677888899999988865 89999999
Q ss_pred ecCC
Q 005123 424 CRNR 427 (713)
Q Consensus 424 d~~~ 427 (713)
+++.
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=338.56 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=217.2
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE----EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~----l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.|...|++++|++++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|++|+|++++++|++|+.|++|+|||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 366789999999985 688999999999999998775443 458999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcC-CCCEEEEEeCCCc
Q 005123 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHP-TKSLLVSGGKDSL 293 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~sp-dg~~L~sgs~Dg~ 293 (713)
++.+..+.+|...|++++|++++ .+|++++.|++|++||+++++.+..+. .+...+.+++|++ ++++|++|+.|++
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 99999999999999999999988 478999999999999999988877764 3556799999998 4578899999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|+|||+++++.+.++.+|...|++++|++++ ++|++|+.|++|+|||+++++.+ .+.+|.+.|++++|+|++..+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEE
Confidence 9999999999999999999999999999987 57999999999999999988755 578899999999999976778999
Q ss_pred EECCCcEEEEEcCCCC
Q 005123 373 GSLDGSIFHWLVGHET 388 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~ 388 (713)
++.|++|++|++.++.
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999997653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=335.17 Aligned_cols=292 Identities=17% Similarity=0.311 Sum_probs=247.5
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEE-EEEC---CCcEEEEeCCCCceEEEE-eccCCCEEEEEEccC---CCEEEEEeC
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLI-TGSQ---SGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN---DNWMVSGDD 206 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~La-tgs~---dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spd---g~~L~sgs~ 206 (713)
++...+.+|.+.|++++|+++++.|+ +++. |+.|+|||+.+++..... ..|...|.+++|+++ +++|++++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 44556678999999999999997665 5554 899999999988776543 378999999999998 699999999
Q ss_pred CCcEEEEEcCCCc-eeeeeccCCCCeeEEEE------ecCCCEEEEEECCCeEEEEEcCCCe-eEEEEccCCC----ceE
Q 005123 207 GGAIKYWQNNMNN-VKANKSAHKESVRDLSF------CRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW----DVK 274 (713)
Q Consensus 207 DG~I~vwdl~~~~-~~~~~~~~~~~V~~l~f------s~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~----~V~ 274 (713)
||.|++||+.+++ .+..+..|...|.+++| ++++++|++++.|++|++||+++.+ .+..+..+.. .|.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999887 78888899999999965 6789999999999999999999876 6677765544 789
Q ss_pred EEE----EcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCeeE
Q 005123 275 SVD----WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 275 sl~----~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
+++ |++++++|++++.|+.|++||+++++.+.. ..+...|.+++|++ ++++|++++.|+.|++||+++++.+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 998 678999999999999999999999887554 55888999999999 9999999999999999999987765
Q ss_pred EEee-----cCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCCc------------------eEEEecccCCCeEE
Q 005123 348 ESFR-----GHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETP------------------QVEIHNVHDNTVWD 403 (713)
Q Consensus 348 ~~~~-----~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~------------------~~~~~~~h~~~V~~ 403 (713)
..+. .|...|++++|++ ++. +|++++.||.|++||++.... .+.....|...|++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred cceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 5544 8999999999999 555 899999999999999975432 34556679999999
Q ss_pred EEEcCCCcEEE---EeCCcEEEEecCCC
Q 005123 404 LAWHPIGYLLC---SNDHTTKFWCRNRP 428 (713)
Q Consensus 404 l~~spdg~~la---S~Dg~v~iWd~~~~ 428 (713)
++|++++.+++ +.|+.|+||++...
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 99999995553 38999999999654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=348.86 Aligned_cols=325 Identities=26% Similarity=0.453 Sum_probs=275.3
Q ss_pred ceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceee------------eEEEEeeCCCCCceEEEEEccCCC
Q 005123 90 RYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA------------KFVHTSLNKNRCSINRVLWTPTGR 157 (713)
Q Consensus 90 ~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~~~~~~l~~H~~~V~~v~~spdg~ 157 (713)
....+++|+...+....+.. +...+..++|+.+....+.. ......+.+|...|++++|+++++
T Consensus 200 ~d~~v~~w~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 200 DDKTVKLWNRNGQLLQTLTG----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp TTSEEEEECTTSCEEEEEEC----CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCcEEEEEec----CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence 45689999876543332221 22233344454443322210 112356789999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs 237 (713)
+|++++.|+.|++||.. ++....+.+|...|.+++|++++++|++++.|+.|++||+.... ...+..|...|.+++|+
T Consensus 276 ~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEEC
Confidence 99999999999999964 56778899999999999999999999999999999999987654 45567899999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 238 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 238 ~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+++++|++++.|++|++||. +++.+..+..|...|++++|++++++|++++.|+.|+|||. +++.+..+.+|...|++
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 431 (577)
T ss_dssp TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEE
Confidence 99999999999999999995 56778888899999999999999999999999999999995 57788889999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
++|++|+++|++++.|+.|++||+ +++.+..+..|...|++++|++ ++++|++++.|+.|+|||.. ......+.+|
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~--~~~~~~~~~h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGH 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETT--SCEEEEEECC
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCC--CCEEEEEeCC
Confidence 999999999999999999999996 5778889999999999999999 89999999999999999963 3455667789
Q ss_pred CCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 398 DNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
...|++|+|++++.+|++ .|+.|+|||++
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 999999999999977764 89999999963
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=338.32 Aligned_cols=282 Identities=18% Similarity=0.339 Sum_probs=255.8
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+|.+.|++++|++++++|++++.||.|+||| .+++.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 45788999999999999999999999999999 67788889999999999999999999999999999999999999998
Q ss_pred eeeeccCCCC---------------eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 221 KANKSAHKES---------------VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 221 ~~~~~~~~~~---------------V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
+..+..+... +.+++|++++ .+++++.|+.|++||+++++.+..+..|...|.+++|++++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 8888777766 9999999874 58899999999999999998888999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
++++.|+.|++||+++++.+..+..|...|.+++|++++ +|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~- 340 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ- 340 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCC-------------------ceEEEecccCC--CeEEEEEcCCCcEEE--EeCCcEEE
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHET-------------------PQVEIHNVHDN--TVWDLAWHPIGYLLC--SNDHTTKF 422 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~-------------------~~~~~~~~h~~--~V~~l~~spdg~~la--S~Dg~v~i 422 (713)
++++|++++.||.|++||+++.. ..+..+..|.. .|++++|++++.+|+ +.|+.|+|
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 78999999999999999997654 14555666765 999999999997764 39999999
Q ss_pred EecC
Q 005123 423 WCRN 426 (713)
Q Consensus 423 Wd~~ 426 (713)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=349.48 Aligned_cols=287 Identities=16% Similarity=0.327 Sum_probs=253.8
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~ 216 (713)
.|...|++++|++++++|++++.||.|+|||+.+ .+.+..+..|...|++++|+++ +++|++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999987 4578888999999999999998 8999999999999999999
Q ss_pred CCc------eeee---eccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccC------CCceEEEEEcC
Q 005123 217 MNN------VKAN---KSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------GWDVKSVDWHP 280 (713)
Q Consensus 217 ~~~------~~~~---~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h------~~~V~sl~~sp 280 (713)
+++ .... ...|...|.+++|+++ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 3222 3578899999999999 789999999999999999999998888876 78899999999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-ceEEEEc-cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecC
Q 005123 281 TK-SLLVSGGKDS---LVKLWDAKSG-RELCSFH-GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 281 dg-~~L~sgs~Dg---~I~IwDl~t~-~~~~~~~-~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h 353 (713)
++ .+|++++.|+ .|++||++++ +.+..+. +|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 87 6899999998 9999999986 5667777 8999999999999 9999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE----------------------------------ecccCC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI----------------------------------HNVHDN 399 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~----------------------------------~~~h~~ 399 (713)
...|++++|++++..+|++++.|+.|+|||+.+....... ...|..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 9999999999944489999999999999999765432211 011567
Q ss_pred CeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 400 TVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 400 ~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.|.+++|+++|.+|++ .|+.|+||+++..
T Consensus 385 ~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 7889999999999976 7999999998653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=329.18 Aligned_cols=243 Identities=17% Similarity=0.317 Sum_probs=226.5
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+..|...|.+++|++++++|++|+.|+.|+|||+.+. +....+.+|...|.+++|++++ .|++++.|+.|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEE
Confidence 34568899999999999999999999999999998875 3566788999999999999776 588999999999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+.+|...|++++|++++++|++++.|++|
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 295 KLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
+|||+++++.+..+.. +...|++++|++++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|++ ++.+|++
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s 329 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEE
Confidence 9999999888777653 334799999999999999999999999999999999999999999999999999 7899999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
++.|+.|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=346.83 Aligned_cols=281 Identities=15% Similarity=0.198 Sum_probs=232.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+.+.|++++|++++++||+++.|+.|+|||+.++ +.+..+..|...|++++|++++++|++++.|+.|+|||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 46789999999999999999999999999999988 6778888999999999999999999999999999999999877
Q ss_pred ---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe---eEEEEcc-CCCceEEEEEcCCCCEEEEEeCCC
Q 005123 220 ---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 220 ---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~---~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
....+..|...|.+++|++++++|++++.|++|++||+++.+ ....+.. |...|.+++|++++++|++++.|+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 566677899999999999999999999999999999998876 3677777 999999999999999999999999
Q ss_pred cEEEEECCC------------------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----EEEe
Q 005123 293 LVKLWDAKS------------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----LESF 350 (713)
Q Consensus 293 ~I~IwDl~t------------------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~----l~~~ 350 (713)
.|++||+++ ++.+..+ .|...|++++|++++++|++++.|+.|+|||+++++. +..+
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 999999852 4455556 7899999999999999999999999999999999887 7888
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------------------------------------ceE-
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------------------------------------PQV- 391 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------------------------------------~~~- 391 (713)
..|...|++++|++ ++.+|++++.|+.+ +|+..... ...
T Consensus 248 ~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (377)
T 3dwl_C 248 KLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325 (377)
T ss_dssp ECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred cCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 78888888766555 66654211 000
Q ss_pred ------------EEecccCCCeEEEEEcCCC------cEEEEeCCcEEEEec
Q 005123 392 ------------EIHNVHDNTVWDLAWHPIG------YLLCSNDHTTKFWCR 425 (713)
Q Consensus 392 ------------~~~~~h~~~V~~l~~spdg------~~laS~Dg~v~iWd~ 425 (713)
.+...|.+.|++|++.+.. .+.++.||.|+|||+
T Consensus 326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 326 NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred chhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0112389999999976544 333459999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=319.42 Aligned_cols=252 Identities=20% Similarity=0.364 Sum_probs=228.1
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwD 256 (713)
+..+++.+|.+.|++++|+|++++|++++.||.|+|||++++..+..+..|...|.+++|++++++|++++.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcC-CCCEEEEEECCC
Q 005123 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQ 334 (713)
Q Consensus 257 l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg 334 (713)
+++++.+..+.+|...|.+++|++++++|++++.|++|+|||++++ .....+.+|...|.+++|++ ++.+|++|+.|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 45567889999999999999 678999999999
Q ss_pred eEEEEECCCCeeEEEee-cCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 335 IIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~~~-~h~~~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
+|+|||+++.+....+. .|...|..++|++. ++.+|++++.|++|+|||+++.. .+..+.+|...|.+++|++++.+
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-cceeeCCCCCCEEEEEECCCCCE
Confidence 99999998877665554 46678999999873 46799999999999999998765 45566689999999999999977
Q ss_pred EEE--eCCcEEEEecCCCC
Q 005123 413 LCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~~~ 429 (713)
|++ .|++|+|||++...
T Consensus 243 l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEEETTSCEEEEETTTCC
T ss_pred EEEEcCCCeEEEEECCCCc
Confidence 754 89999999986544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=335.71 Aligned_cols=281 Identities=14% Similarity=0.185 Sum_probs=244.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
..+.+..|++++++|++++.||.|+|||+.+++....+..|...|++++|++++++|++++.|+.|++||+++++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 44555678999999999999999999999999888888899999999999999999999999999999999999998889
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc---CCCceEE---------------------EEEcC
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HGWDVKS---------------------VDWHP 280 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~---h~~~V~s---------------------l~~sp 280 (713)
..|...|.+++|++++++|++++.|++|++||+++++.+..+.. +...|.+ ++|++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999998888874 3334444 55578
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCee-EEEeec-CCCC
Q 005123 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKE-LESFRG-HRKD 356 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~~~-l~~~~~-h~~~ 356 (713)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.|+.|++||+++++. +..+.. |...
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 89999999999999999999998877775 4788999999999998 999999999999999998754 667766 6677
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------ceEEEecccCCCeEEEEEcCCCc----EEEE-eCCcEEEE
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------PQVEIHNVHDNTVWDLAWHPIGY----LLCS-NDHTTKFW 423 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------~~~~~~~~h~~~V~~l~~spdg~----~laS-~Dg~v~iW 423 (713)
|+++.|. ++.+|++++.|+.|++||+.... ........|.+.|.+++|++++. ++++ .++.+++|
T Consensus 338 v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 338 INNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred ceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 8888665 46899999999999999997632 12234556888999999999987 6655 89999999
Q ss_pred ecCC
Q 005123 424 CRNR 427 (713)
Q Consensus 424 d~~~ 427 (713)
+++.
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=345.47 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=238.1
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEE--EEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEM--ILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~--~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwd 214 (713)
....|...|+||+|+| ++++||+|+.||.|+|||+.+.+... .+.+|.+.|++|+|+| ++++|++++.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3457889999999998 56799999999999999998776544 4467999999999997 689999999999999999
Q ss_pred cCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEeCC
Q 005123 215 NNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKD 291 (713)
Q Consensus 215 l~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~D 291 (713)
++++........ +...+.+++|++++++|++++.||+|++||++. +.+..+.+|...|++|+|++++. +|++++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 987755444333 345678999999999999999999999999865 56677888999999999999875 78899999
Q ss_pred CcEEEEECCCCceEEE---EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC------CeEEEEE
Q 005123 292 SLVKLWDAKSGRELCS---FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAW 362 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~---~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~------~V~sl~f 362 (713)
+.|+|||+++.+.... ..+|...|++++|++++++|++++.|+.|+|||+++++....+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999998765433 356889999999999999999999999999999999988777766543 2345567
Q ss_pred eCCCCCEEEEEE------------CCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 363 HPFHEEYFVSGS------------LDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 363 sp~~~~~lasgs------------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
++ ++.++++++ .++.|+|||+.++.....+...|...|.++ +|++++.+|++ .|++|+||+++..
T Consensus 353 ~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 353 HP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp CS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred cC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 77 455555543 345799999988887777777888889887 69999988876 8999999998654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=337.60 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=243.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.+++++|++++++|++++.|+.|++||+.+.+....+..| ..+....|++++++|++++.||.|+|||+++++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3558999999999999999999999999887665555555 445566789999999999999999999999999888888
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.|...|++++|++++++|++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEcc---CCCCeEE---------------------EEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEE
Q 005123 306 CSFHG---HKNMVLC---------------------VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTAL 360 (713)
Q Consensus 306 ~~~~~---h~~~I~s---------------------i~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl 360 (713)
..+.. +...|.+ ++|++++++|++++.|+.|+|||+++++.+..+. .|...|+++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 88874 3334444 4557899999999999999999999988877664 478899999
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEE-EecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
+|++++..+|++++.||.|++||+++....+. +...|...|+++.|. ++.++++ .|+.|+||++.....
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCC
Confidence 99994444999999999999999988765444 444477888888766 5545544 899999999977543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=329.44 Aligned_cols=284 Identities=15% Similarity=0.283 Sum_probs=250.9
Q ss_pred CCCCCceEEEEEccCCC-EEEEEECCCcEEEEeC----CCCc------eEEEEec----------cCCCEEEEEEccCCC
Q 005123 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNG----QSFN------FEMILQA----------HDHAIRSMVWSHNDN 199 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~----~t~~------~~~~l~~----------h~~~V~sl~~spdg~ 199 (713)
..|.+.|++++|+++++ +||+++.||.|+|||+ .+++ ....+.. |...|++++|+++++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 8877 4555554 678999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc-------
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD------- 272 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~------- 272 (713)
+|++++.||.|+||| .+++.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 667777888899999999999999999999999999999999999999888877766
Q ss_pred --------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005123 273 --------VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 273 --------V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
+.+++|++++ .+++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999874 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEE
Q 005123 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKF 422 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~i 422 (713)
+.+..+..|...|.+++|++ ++ +|++++.|+.|++||+++.. .......|...|.+++|++++.++++ .|+.|+|
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 99999999999999999999 55 99999999999999997765 44555578899999999999977754 8999999
Q ss_pred EecCCCC
Q 005123 423 WCRNRPG 429 (713)
Q Consensus 423 Wd~~~~~ 429 (713)
|+++...
T Consensus 357 ~~~~~~~ 363 (425)
T 1r5m_A 357 YDLKKLN 363 (425)
T ss_dssp EECHHHH
T ss_pred EECCCCc
Confidence 9996544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=340.98 Aligned_cols=334 Identities=16% Similarity=0.258 Sum_probs=264.8
Q ss_pred ceeEEEEEeccCC------CceeeccCccccccCccceeeeCCCCCceeee---------------EEEEeeCCCCCceE
Q 005123 90 RYMQIRMWQRDSR------DRTVLQATPAAAIDMLPTVAYTDNPSTSFAAK---------------FVHTSLNKNRCSIN 148 (713)
Q Consensus 90 ~~~~ir~W~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~l~~H~~~V~ 148 (713)
....+++|+.... .... ..........+..++|+.+....+... .....+.+|...|+
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNV-KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN 164 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEE-EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred CCCEEEEEeCCCCcccccccccc-cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEE
Confidence 4568999998533 1111 111112233455566665544333211 13456789999999
Q ss_pred EEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCC---CEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 149 RVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 149 ~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
+++|+++++ +|++++.|+.|++||+.+++.+..+..|.. .|++++|+++ +++|++++.||.|++||+.+++.+..
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 999999998 899999999999999999999999999999 9999999999 99999999999999999999998888
Q ss_pred e-c---cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------------------------------
Q 005123 224 K-S---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG------------------------------- 268 (713)
Q Consensus 224 ~-~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~------------------------------- 268 (713)
+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEE
Confidence 8 6 899999999999 999999999999999999987655443332
Q ss_pred --------------CCCceEE---------------------------------EEEcCC--------------------
Q 005123 269 --------------HGWDVKS---------------------------------VDWHPT-------------------- 281 (713)
Q Consensus 269 --------------h~~~V~s---------------------------------l~~spd-------------------- 281 (713)
|...|.+ ++| ++
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred EECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 2222222 222 11
Q ss_pred -----------------------------------------------------CCEEEEEeC-CCcEEEEECCCCceE-E
Q 005123 282 -----------------------------------------------------KSLLVSGGK-DSLVKLWDAKSGREL-C 306 (713)
Q Consensus 282 -----------------------------------------------------g~~L~sgs~-Dg~I~IwDl~t~~~~-~ 306 (713)
+++|++++. |+.|++||+.+++.. .
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccc
Confidence 334444454 555666665554433 4
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCC---------CCCEEEEEECC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPF---------HEEYFVSGSLD 376 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~---------~~~~lasgs~D 376 (713)
.+..|...|++++|++++++|++++.|+.|+|||+++++.+..+.+ |...|++++|++. ++++|++++.|
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d 562 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence 4566888999999999999999999999999999999999999988 9999999999983 57899999999
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
|.|++||+.+....+..+.+|...|++++|++++. |++ .|++|+||+++.
T Consensus 563 g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 563 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999887667778889999999999999998 543 899999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=317.48 Aligned_cols=245 Identities=20% Similarity=0.378 Sum_probs=224.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|...|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||++.
T Consensus 59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CceeeeeccCCCCeeEEEEecC------CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 218 NNVKANKSAHKESVRDLSFCRT------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~d------g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
..+..+..|...|.++.|+++ +..|++++.|++|++||+++.+....+.+|...|.+++|++++++|++++.|
T Consensus 139 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d 217 (319)
T 3frx_A 139 -QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217 (319)
T ss_dssp -CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred -CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 556677889999999999884 4589999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec--------CCCCeEEEEEe
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--------HRKDVTALAWH 363 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~--------h~~~V~sl~fs 363 (713)
++|+|||+++++.+..+.. ...|.+++|++++.+|++++.+ .|++|+++....+..+.. |...+.+++|+
T Consensus 218 g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 295 (319)
T 3frx_A 218 GEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295 (319)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence 9999999999999888874 5679999999999999988755 599999998877766642 45679999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcCC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+ ++++|++++.||.|+|||+.+
T Consensus 296 p-dg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 296 A-DGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp T-TSSEEEEEETTSCEEEEEEEE
T ss_pred C-CCCEEEEeecCceEEEEEEee
Confidence 9 899999999999999999865
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=323.78 Aligned_cols=251 Identities=21% Similarity=0.405 Sum_probs=217.6
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+|...|++++|++++++||+|+.|+.|+|||..+. +.+..+.+|...|.+++|++++++|++++.|++|+|||+++
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 4689999999999999999999999999999998776 45678899999999999999999999999999999999987
Q ss_pred Cc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCCCCEEEEEeCCC
Q 005123 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 218 ~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
+. .+..+..|...|.+++|++++++|++++.|++|++||+++.+ ....+.+|...|.+++|++++++|++++.|+
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 63 455677899999999999999999999999999999998775 4567889999999999999999999999999
Q ss_pred cEEEEECCCC---------------ceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------eE
Q 005123 293 LVKLWDAKSG---------------RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------EL 347 (713)
Q Consensus 293 ~I~IwDl~t~---------------~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---------~l 347 (713)
+|+|||.... +++..+.+ |...|.+++|++++.+|++++.|+.|+|||++... ..
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 9999996321 23444544 78899999999999999999999999999987542 12
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
....+|...|++++|+|++..+||+++.||+|+||++.+.+..
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 2345799999999999955579999999999999999876644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=331.15 Aligned_cols=251 Identities=20% Similarity=0.338 Sum_probs=213.7
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE----EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~----~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..+|...|++++|+++++ +++++.||+|+|||+.+++.. ....+|...|++|+|++++++|++++.|+.|+|||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 346889999999999985 567888999999999887543 344579999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCC-CCEEEEEeCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPT-KSLLVSGGKD 291 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spd-g~~L~sgs~D 291 (713)
++++.+..+..|...|++++|++++. +|++++.|++|++||+++++.+..+ ..+...|.+++|+|+ +.+|++|+.|
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 99999999999999999999999874 7899999999999999988766554 346678999999997 5689999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
+.|+|||+++++.+..+..|...|++++|++++ ++|++++.|++|+|||+++++.+..+ +|...|++|+|+|.++.+|
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEE
T ss_pred cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEE
Confidence 999999999999999999999999999999986 67899999999999999999877665 6999999999998778999
Q ss_pred EEEECCCcEEEEEcCCCCceEE
Q 005123 371 VSGSLDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~ 392 (713)
++++.||+|++|++.+..+...
T Consensus 328 ~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp EEEETTSCEEEEECC-------
T ss_pred EEEcCCCeEEEEECCCCCcccc
Confidence 9999999999999976554433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=336.94 Aligned_cols=288 Identities=14% Similarity=0.200 Sum_probs=240.5
Q ss_pred eEEEEeeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCC---Cc---eEEEEeccCCCEEEEEEccCCCEEEEEeC
Q 005123 134 KFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FN---FEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t---~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 206 (713)
+.+.....+|.+.|++++|++ ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|++++++|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 344444489999999999999 999999999999999999766 32 23333 48999999999999999999999
Q ss_pred CCcEEEEEcC---CCceeeeec----------c--CCCCeeEEE--EecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-
Q 005123 207 GGAIKYWQNN---MNNVKANKS----------A--HKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (713)
Q Consensus 207 DG~I~vwdl~---~~~~~~~~~----------~--~~~~V~~l~--fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~- 268 (713)
||.|+|||++ +++...... . +...+.++. +++++.+|++++.|++|++||+++++.+..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 9999999995 444333222 1 455677777 557899999999999999999999999999988
Q ss_pred -CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcC----CCCEEEEEECCCeEEEEECC
Q 005123 269 -HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ----NGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 269 -h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fsp----dg~~Latgs~Dg~I~IwDl~ 342 (713)
|...|++++|++++++|++++.|+.|+|||+++++.+..+. .|...|++++|++ ++.+|++++.|+.|+|||++
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 88999999999999999999999999999999999998886 6788999996654 67899999999999999999
Q ss_pred CCeeEEEeecC--------------------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec-
Q 005123 343 AMKELESFRGH--------------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN- 395 (713)
Q Consensus 343 t~~~l~~~~~h--------------------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~- 395 (713)
+++.+..+..| ...|++++|+ ++.+|++++.|+.|++||+.+......+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 99988877644 4458888998 358999999999999999987765444332
Q ss_pred -----------------------------------ccCCCeEEEEEcCC--CcEEEE--eCCcEEEEe
Q 005123 396 -----------------------------------VHDNTVWDLAWHPI--GYLLCS--NDHTTKFWC 424 (713)
Q Consensus 396 -----------------------------------~h~~~V~~l~~spd--g~~laS--~Dg~v~iWd 424 (713)
.|.+.|++++|+++ +.+|++ .||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 28899999999988 655544 999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.34 Aligned_cols=285 Identities=20% Similarity=0.351 Sum_probs=254.7
Q ss_pred EEeeCCCCCce-EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V-~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...+.+|.+.| .|+.+ ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|++++ +|++++.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 44678998885 66666 57899999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEe--cCCCEEEEEECCCeEEEEEcCCCee-----------------------EEEEccCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-----------------------ERSLTGHG 270 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs--~dg~~Las~s~Dg~I~iwDl~~~~~-----------------------~~~l~~h~ 270 (713)
++++.+..+..|...|.+++|+ +++.+|++++.|++|++||+++... +..+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999998 5778999999999999999987642 45667788
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
..|.++. +++++|++++.|+.|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+
T Consensus 271 ~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 8888885 45889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
.+|...|.+++|+ +.+|++++.||.|++||+++....... .+...+..++|++++.++++ .|+.|+|||++...
T Consensus 349 ~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 349 QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 423 (464)
T ss_dssp CCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCC
T ss_pred eCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCc
Confidence 9999999999996 579999999999999999876644443 35677888999999988765 89999999997654
Q ss_pred Cc
Q 005123 430 DT 431 (713)
Q Consensus 430 ~~ 431 (713)
..
T Consensus 424 ~~ 425 (464)
T 3v7d_B 424 LV 425 (464)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=321.88 Aligned_cols=244 Identities=19% Similarity=0.327 Sum_probs=226.0
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
.+..|...|.+++|++++++|++++.|+.|++|++... .....+..|...|.+++|+++++.|++++.|++|+|
T Consensus 101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 34568889999999999999999999999999997643 345677889999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||+++++.+..+..|...|.+++|++ ++++|++++.|++|++||+++++.+..+..|...|++++|++++++|++++.
T Consensus 181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 99999999999999999999999987 5689999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|++|+|||+++++.+..+..+ ...+++++|++++++|++++.|+.|+|||+.+++.+..+.+|...|++++|++ ++.
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~ 339 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGT 339 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCC
Confidence 999999999998887776543 34789999999999999999999999999999999999999999999999999 789
Q ss_pred EEEEEECCCcEEEEE
Q 005123 369 YFVSGSLDGSIFHWL 383 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd 383 (713)
+|++++.|++|+||+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=314.08 Aligned_cols=248 Identities=19% Similarity=0.334 Sum_probs=217.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC--CceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t--~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vwd 214 (713)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+ .+.+..+.+|.+.|.+++|+++ +++|++++.|++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5679999999999999999999999999999999874 4677899999999999999863 89999999999999999
Q ss_pred cCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCC-------
Q 005123 215 NNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPT------- 281 (713)
Q Consensus 215 l~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spd------- 281 (713)
+++++ .+..+..|...|.+++|+++ +.+|++++.|++|++||+++.. ....+.+|...|.+++|+++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 98874 45566789999999999997 8899999999999999998753 24567789999999999996
Q ss_pred ------CCEEEEEeCCCcEEEEECCCCc----eEEEEccCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCe---
Q 005123 282 ------KSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMK--- 345 (713)
Q Consensus 282 ------g~~L~sgs~Dg~I~IwDl~t~~----~~~~~~~h~~~I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~--- 345 (713)
+++|++|+.|++|+|||+++++ .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++..
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~ 243 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc
Confidence 5799999999999999998866 566788999999999999984 899999999999999998643
Q ss_pred eEEEe--ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 346 ELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 346 ~l~~~--~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
....+ ..|...|.+++|++ ++++|++++.|+.|+||+....
T Consensus 244 ~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 244 KKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred ceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECCC
Confidence 12233 46788999999999 7899999999999999998644
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=337.45 Aligned_cols=286 Identities=21% Similarity=0.394 Sum_probs=250.6
Q ss_pred CCceEEEEEccCCC-EEEEE----------ECCCcEEEEeCCCCce---EEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 144 RCSINRVLWTPTGR-RLITG----------SQSGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 144 ~~~V~~v~~spdg~-~Latg----------s~dg~V~Iwd~~t~~~---~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
...|.+++|+++++ +|+++ +.|+.|+|||+.+.+. +.. ..|...|++++|++++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCe
Confidence 34689999999987 89999 8899999999988752 322 358899999999999999999999999
Q ss_pred EEEEEcCC----CceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCe------eEEE---EccCCCceEE
Q 005123 210 IKYWQNNM----NNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ------EERS---LTGHGWDVKS 275 (713)
Q Consensus 210 I~vwdl~~----~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~------~~~~---l~~h~~~V~s 275 (713)
|+|||+.+ .+....+..|...|++++|+++ +++|++++.|++|++||+++.+ .... +..|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 4577788899999999999998 8999999999999999998876 3322 3568899999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEccC------CCCeEEEEEcCCC-CEEEEEECCC---eEEEEECCCC
Q 005123 276 VDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM 344 (713)
Q Consensus 276 l~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h------~~~I~si~fspdg-~~Latgs~Dg---~I~IwDl~t~ 344 (713)
++|+++ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|++++ .+|++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999998 789999999999999999999999888876 7889999999987 6899999998 9999999986
Q ss_pred -eeEEEee-cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC-cEEEE--eCCc
Q 005123 345 -KELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCS--NDHT 419 (713)
Q Consensus 345 -~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~laS--~Dg~ 419 (713)
+.+..+. .|...|++++|++.++.+|++++.||.|++||+++... +..+..|...|++++|++++ .++++ .|+.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 6677787 89999999999986789999999999999999987654 45556789999999999998 67765 8999
Q ss_pred EEEEecCCCCCc
Q 005123 420 TKFWCRNRPGDT 431 (713)
Q Consensus 420 v~iWd~~~~~~~ 431 (713)
|+||+++.....
T Consensus 330 i~iw~~~~~~~~ 341 (416)
T 2pm9_A 330 IEVQTLQNLTNT 341 (416)
T ss_dssp EEEEESCCCCCS
T ss_pred EEEEEccCCCCC
Confidence 999999776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=326.34 Aligned_cols=286 Identities=21% Similarity=0.360 Sum_probs=247.5
Q ss_pred eCCCCCc--eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 140 LNKNRCS--INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 140 l~~H~~~--V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+|.+. +.+++|+. +.+++++.|+.|+|||+.+++....+.. |...|++++|++++++|++++.||.|+|||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 4466655 45566664 5688899999999999999998887776 78999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+++.+..+..|...|.+++| ++++|++++.|+.|++||++ ....+..+..|...|.+++|++++++|++++.|+.|+
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999999 56799999999999999998 5667788889999999999999999999999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCC-CEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg-~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
+||+++++.+..+..|...|.+++|++++ .+|++++ .|+.|++||+++++.+..+. +...|++++|++ ++.+|++
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~ 320 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMS 320 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEE
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEE
Confidence 99999999999999999999999999976 4555554 69999999999999998886 667899999999 7888888
Q ss_pred EE--CCCcEEEEEcCCCCceEE-EecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 373 GS--LDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 373 gs--~DG~I~Iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
++ .||.|+|||+.+...... .+..|...|.+++|++++.++++ .|+.|+||++......
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 54 899999999977543322 35678999999999999987765 8999999999765543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=353.36 Aligned_cols=291 Identities=23% Similarity=0.374 Sum_probs=267.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.+.+.+|.+.|++++|+|++++||+++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|+|||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I 294 (713)
+++.+..+..|...|++++|++++.+|++++.|++|++||+.++ .....+..|...|.+++|++ ++++|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999886 67788888999999999999 88899999999999
Q ss_pred EEEECCCCceEEEEccCC-CCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 295 KLWDAKSGRELCSFHGHK-NMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~-~~I~si~fsp--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
++||+++++....+..+. ..+.+++|++ ++.+|++++.|+.|++||+++++.+..+..|...|++++|++ ++.+|+
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 244 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 999999888777776554 8899999999 999999999999999999999999999999999999999999 788999
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--EE-EEeCCcEEEEecCCCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LL-CSNDHTTKFWCRNRPG 429 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~l-aS~Dg~v~iWd~~~~~ 429 (713)
+++.||.|++||+.+.. .......|...|++++|++++. ++ ++.|+.+.+|++....
T Consensus 245 ~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEETTSCEEEEETTTCS-EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEeCCCeEEEEECCCCc-EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999997765 4455567888999999999985 34 4589999999986543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=323.62 Aligned_cols=278 Identities=20% Similarity=0.358 Sum_probs=254.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++.|++++.||.|++||+++
T Consensus 153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence 4567899999999997 6799999999999999999999999999999999999995 67899999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++|
T Consensus 229 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 9999999999999999999 7889999999999999999999999999999999999999 68999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---CCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h~~~V~sl~fsp~~~~~lasgs 374 (713)
|+++++.+..+..|...+.++.+ ++++|++++.|+.|++||+++++.+..+.. |...|++++|+ +++|++++
T Consensus 305 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~ 379 (445)
T 2ovr_B 305 DVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSS 379 (445)
T ss_dssp ETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEE
T ss_pred ECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEe
Confidence 99999999999999999999888 567999999999999999999999999886 78899999994 57999999
Q ss_pred CCCcEEEEEcCCCCceEEEe----cccCCCeEEEEEcCCCcEEEE--eCCc----EEEEecCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCS--NDHT----TKFWCRNRP 428 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~laS--~Dg~----v~iWd~~~~ 428 (713)
.||.|++||+.++.....+. ..|.+.|++++|++++.++++ .||+ |.|||++..
T Consensus 380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999998877555542 467889999999999988765 7887 999999764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=315.20 Aligned_cols=284 Identities=15% Similarity=0.243 Sum_probs=250.6
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
|.+.|.+++|++||++|+++..++.+.+|+............|...|++++|++++++|++++ ||.|++||+.+++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888888887666555556668999999999999999999999 9999999998765332
Q ss_pred ee---c--cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 223 NK---S--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 223 ~~---~--~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
.+ . .|...|.+++|++++++|++++.|+.|++||+++.+ ....+..|...|.+++|++++++|++++.|+.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 22 2 688999999999999999999999999999998876 5667778999999999999999999999999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
+||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +...|.+++|++ ++++|++++.
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~ 244 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGME 244 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEET
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999888775 778899999999 7899999999
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCc
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
|+.|++||+++... .....|...|.+++|++++.++++ .|+.|++|+++.....
T Consensus 245 ~~~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 245 SSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCcEEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 99999999977653 345678999999999999977754 8999999999765443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=322.74 Aligned_cols=243 Identities=27% Similarity=0.407 Sum_probs=221.3
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
+...|++++|++|+++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||+++++...
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred eeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEE-------ccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-------TGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l-------~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.+. +...|.+++|++ ++++|++++.|++|++||+++++.+..+ .+|...|.+++|++++++|++++.|++|
T Consensus 202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 664 567899999999 8999999999999999999998877766 5688999999999999999999999999
Q ss_pred EEEECCCC------------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 295 KLWDAKSG------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 295 ~IwDl~t~------------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
+|||+++. .+...+.+|...|.+++|++++++|++++.|+.|+|||+++++.+..+.+|...|.+++|
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence 99999763 345667789999999999999999999999999999999999999999999999999999
Q ss_pred eCC-----CCCEEEEEECCCcEEEEEcCC
Q 005123 363 HPF-----HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 363 sp~-----~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++. ++.+|++|+.||+|+||+++.
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 862 468999999999999999854
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=309.71 Aligned_cols=246 Identities=23% Similarity=0.469 Sum_probs=226.6
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|...|++++|++++++|++++.|+.|+|||+.+++.+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
+.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. .+...+.+++|++++++|++++.|+.|++|
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999999999999999988877664 456789999999999999999999999999
Q ss_pred ECCCCceEEEEccCCCCeEE--EEEc-CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 298 DAKSGRELCSFHGHKNMVLC--VKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~s--i~fs-pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
|+++++.+..+.+|...+.+ ..++ +++++|++++.|+.|++||+++++.+..+.+|...|.+++|++ ++.+|++++
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~ 298 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAA 298 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEE
Confidence 99999999999887665433 2343 5789999999999999999999999999999999999999999 788999887
Q ss_pred --CCCcEEEEEcC
Q 005123 375 --LDGSIFHWLVG 385 (713)
Q Consensus 375 --~DG~I~Iwd~~ 385 (713)
.|+.|++|+.+
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=331.06 Aligned_cols=281 Identities=15% Similarity=0.299 Sum_probs=236.3
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-----------eEEEEeccC------------CCEEEEEEccCC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----------FEMILQAHD------------HAIRSMVWSHND 198 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-----------~~~~l~~h~------------~~V~sl~~spdg 198 (713)
.|.+.|++++|++++++||+|+.||.|+|||+.+.+ ....+.+|. ..|++++|++++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998776 577888998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEEcCCCcee----------------------------------------eeeccCCCCeeEEEE
Q 005123 199 --NWMVSGDDGGAIKYWQNNMNNVK----------------------------------------ANKSAHKESVRDLSF 236 (713)
Q Consensus 199 --~~L~sgs~DG~I~vwdl~~~~~~----------------------------------------~~~~~~~~~V~~l~f 236 (713)
.+|++++.|+.|+|||+.++... .....|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764432 113578999999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCC-eeEEE-------EccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q 005123 237 CRTDLKFCSCSDDTTVKVWDFARC-QEERS-------LTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE--- 304 (713)
Q Consensus 237 s~dg~~Las~s~Dg~I~iwDl~~~-~~~~~-------l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~--- 304 (713)
++++++|+++ .|++|++||+++. +.+.. +..|...|.+++|++++ ++|++++.|+.|+|||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 8999999999843 33332 45788999999999998 9999999999999999999887
Q ss_pred -EEEEccCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeeEEEeecCCCC--------------
Q 005123 305 -LCSFHGHKN------------MVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD-------------- 356 (713)
Q Consensus 305 -~~~~~~h~~------------~I~si~fspdg~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~-------------- 356 (713)
+..+..|.. .|.+++|++++++|++++. +.|+|||+++ ++.+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788887776 8999999999999999999 9999999997 8888888888532
Q ss_pred -eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE-------------------------------ecccCCCeEEE
Q 005123 357 -VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI-------------------------------HNVHDNTVWDL 404 (713)
Q Consensus 357 -V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~-------------------------------~~~h~~~V~~l 404 (713)
+..++|++ ++.+|++++.||.|+|||+.++...... ...+...|.++
T Consensus 344 ~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 33499999 7899999999999999999876543211 01234578999
Q ss_pred EEcCCCcEEEE-eCCcEEEEec
Q 005123 405 AWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 405 ~~spdg~~laS-~Dg~v~iWd~ 425 (713)
+|+|++.+||. ..+.+.+|..
T Consensus 423 ~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSCEEEEEC
T ss_pred EECCCCCEEEEEecceeeeecc
Confidence 99999988876 6677888864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=315.49 Aligned_cols=244 Identities=20% Similarity=0.421 Sum_probs=204.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+|...|++++|++++++|++|+.|+.|+|||+.+ .+.+..+.+|...|.+++|++++++|++++.|++|+|||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 4999999999999999999999999999999853 356778899999999999999999999999999999999
Q ss_pred cCCC----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC--eeEEEEccCCCceEEEEEcCC--CCEEE
Q 005123 215 NNMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPT--KSLLV 286 (713)
Q Consensus 215 l~~~----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~--~~~~~l~~h~~~V~sl~~spd--g~~L~ 286 (713)
++.. +.+..+..|...|.+++|++++.+|++++.|++|++||+.+. +.+..+.+|...|.+++|+++ +.+|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 9532 456677889999999999999999999999999999999776 567888999999999999998 67899
Q ss_pred EEeCCCcEEEEECCCC--------ceEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--eEE-EeecCC
Q 005123 287 SGGKDSLVKLWDAKSG--------RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELE-SFRGHR 354 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~--------~~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--~l~-~~~~h~ 354 (713)
+++.|++|+|||++++ .....+.. |...|.+++|++++ +|++++.|+.|+|||+.+++ .+. .+..|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 9999999999998754 33444444 88899999999654 89999999999999998774 333 335687
Q ss_pred C-CeEEEEEeCC-CCCEEEEEECCCcEEEEEcCC
Q 005123 355 K-DVTALAWHPF-HEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 355 ~-~V~sl~fsp~-~~~~lasgs~DG~I~Iwd~~~ 386 (713)
. .|.+++|++. ++.+|++++.||+|+|||+++
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 6 8999999984 578999999999999999854
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=324.43 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=248.3
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEc--cCCCEEEEEeCCCcEEEEE
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--HNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~s--pdg~~L~sgs~DG~I~vwd 214 (713)
...+.+|.+.|++++|++++ +|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +++++|++++.|+.|++||
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 34567899999999999988 99999999999999999999999999999999999998 5778999999999999999
Q ss_pred cCCCce-----------------------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC
Q 005123 215 NNMNNV-----------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (713)
Q Consensus 215 l~~~~~-----------------------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~ 271 (713)
+.+... ...+..|...|.++ ++++++|++++.|++|++||+++++.+..+.+|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 987652 44566778888877 56789999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
.|.+++|++++++|++++.|+.|++||+++++.+.++.+|...|.+++|+ +++|++++.|+.|++||+++.+....+.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 99999999999999999999999999999999999999999999999996 6899999999999999999988776664
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEec
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~ 425 (713)
+...+..++|++ ++.+|++++ ||.|+|||+++++.+......|...|++++|+.+..++++ .|+.+.+|-+
T Consensus 390 -~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 390 -HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp -CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred -CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 667788889999 788999988 8999999998887665556778999999999855455554 6776666654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=314.30 Aligned_cols=246 Identities=19% Similarity=0.321 Sum_probs=213.3
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+.+|...|++++|++++++|++++.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||+.
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeee--ccCCCCeeEEEEecCC----------CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCE
Q 005123 217 MNNVKANK--SAHKESVRDLSFCRTD----------LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 217 ~~~~~~~~--~~~~~~V~~l~fs~dg----------~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
........ ..|...|.+++|++++ .+|++++.|++|++|| .+.+....+..|...|.+++|++++++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 44332221 3688899999999987 7899999999999999 456677788899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE--Eee----------
Q 005123 285 LVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFR---------- 351 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--~~~---------- 351 (713)
|++++.|+.|+|||+++. .....+. +...|.+++|++++.+|+++ .|+.|+|||+.+.+... .+.
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred EEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 999999999999999543 3444443 45679999999999887655 57789999998766433 333
Q ss_pred -cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 352 -GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 352 -~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
+|...|.+++|++ ++.+|++|+.||.|++|++++
T Consensus 306 ~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 306 KGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEE
T ss_pred cCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEc
Confidence 6778899999999 789999999999999999854
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=326.78 Aligned_cols=278 Identities=22% Similarity=0.454 Sum_probs=245.6
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+|...|+|++| ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3467788999988 7999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE---EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~---~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
.+..+..|...|.+++|+ +.+|++++.|++|++||+++.+.. ..+.+|...|.+++| ++++|++++.|+.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 999999999999999996 569999999999999999877654 677889999999999 6889999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+++++.+..+..|...|.+++| ++++|++|+.|+.|++||+++++.+..+.+|...|.+++| ++.+|++++.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCC
Confidence 999999999999999999999999 5789999999999999999999999999999999999998 57899999999
Q ss_pred CcEEEEEcCCCCc--------eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 377 GSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 377 G~I~Iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
|.|++||+.+... .......|.+.|++++|+....+.++.|++|+|||+.....
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999999855431 55667789999999999433333334899999999976544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=317.11 Aligned_cols=279 Identities=24% Similarity=0.439 Sum_probs=239.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
-.+++|+||.+ ++||+|. |++|+|||..+++....+. .|...|++|+|++++++|++|+.||.|+|||+++++.+.
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 45788999975 5777765 8999999999999887765 567789999999999999999999999999999999999
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
.+..|...|.++++ ++.+|++++.|+.+++||.... ..+..+.+|...+..+.|++++++|++++.|+.|+|||..+
T Consensus 184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 99999999999887 5789999999999999998764 45677889999999999999999999999999999999987
Q ss_pred Cc----eEEEEccCCCCeEEEEEcCCC-CEEEEE--ECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 302 GR----ELCSFHGHKNMVLCVKWNQNG-NWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 302 ~~----~~~~~~~h~~~I~si~fspdg-~~Latg--s~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++ .+.....|...|.+++|++++ .+|+++ +.|++|+|||+++++.+..+..+ ..+.++.|++ +++.|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~~s 339 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGH 339 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC-CCCeEEEEE
Confidence 65 355677889999999999964 555554 47999999999999999888754 5789999999 566666554
Q ss_pred --CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 375 --LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 --~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.|+.|+|||+.+... +..+.+|.+.|++|+|++|+.+|++ .|++|+|||+.....
T Consensus 340 g~~d~~I~iwd~~~~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CTTTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred ecCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 799999999987664 4556789999999999999977754 899999999865443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=319.64 Aligned_cols=252 Identities=17% Similarity=0.312 Sum_probs=211.6
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAI 210 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I 210 (713)
++...+.+|.+.|++++|++++++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|++ ++++|++++.|++|
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 3456678999999999999999999999999999999998764 4677899999999999986 48999999999999
Q ss_pred EEEEcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCee---EEEEccCCCceEEEEEcCC--
Q 005123 211 KYWQNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT-- 281 (713)
Q Consensus 211 ~vwdl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~---~~~l~~h~~~V~sl~~spd-- 281 (713)
+|||+++++ ....+..|...|++++|+++ +.+|++++.|++|++||+++... ...+.+|...|.+++|+++
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 999998873 55667789999999999998 78999999999999999987532 3445678889999999987
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCeEEEEEcCCC----CEEEEEECCCeEEEE
Q 005123 282 ---------------KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLY 339 (713)
Q Consensus 282 ---------------g~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I~si~fspdg----~~Latgs~Dg~I~Iw 339 (713)
+++|++++.|++|+|||+++. +.+..+.+|...|.+++|++++ ++|++++.|++|+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 468999999999999999765 4566788899999999999986 899999999999999
Q ss_pred ECCCC---e-eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 340 DIRAM---K-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 340 Dl~t~---~-~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|+++. + ....+..|...|.+++|++ ++.+|++++.|++|+||+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECTT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECCC
Confidence 99762 1 2234567889999999999 7899999999999999998543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=327.40 Aligned_cols=250 Identities=19% Similarity=0.336 Sum_probs=224.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-------eEEEEeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-------FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-------~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
..+..|...|.+++|++++++|++|+.|+.|+|||+.+.. ....+.+|.+.|.+++|++++ ..|++++.|++
T Consensus 102 ~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 102 HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 3567899999999999999999999999999999986532 345678999999999999974 57999999999
Q ss_pred EEEEEcCCCceeeee-----ccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcC-CCeeEEEEccCCCceEEEEEcCCC
Q 005123 210 IKYWQNNMNNVKANK-----SAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 210 I~vwdl~~~~~~~~~-----~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~-~~~~~~~l~~h~~~V~sl~~spdg 282 (713)
|++||+++++.+..+ ..|...|.+++|++ ++++|++++.|++|++||++ ..+.+..+.+|...|++++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999887766 57889999999977 78999999999999999997 456788899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEccCC-------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe----e
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF----R 351 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-------~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~----~ 351 (713)
++|++++.|++|+|||+++++.+..+..+. ..|++++|++++++|++|+.|+.|+|||+.+++.+..+ .
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 341 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCS
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccC
Confidence 999999999999999999999888876433 24899999999999999999999999999999888777 6
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
+|...|++++|++ ++.+|++|+.|++|+||++....
T Consensus 342 ~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 SHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCceEEEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 7999999999999 89999999999999999997554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.20 Aligned_cols=280 Identities=23% Similarity=0.397 Sum_probs=251.6
Q ss_pred EeeCCCCCce-EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V-~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.+|.+.| +|+. .++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||++
T Consensus 112 ~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 4577899875 5544 468999999999999999999999999999999999999997 6799999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+++.+..+..|...|.+++|+ ++.|++++.|++|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999995 678999999999999999999999999999999999999 6889999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+++++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...+.++.++ +++|++++.|
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d 338 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNAD 338 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETT
T ss_pred EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCC
Confidence 999999999999999999999999 88999999999999999999999999999999999999885 5699999999
Q ss_pred CcEEEEEcCCCCceEEEec--ccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 377 GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
|.|++||+++......+.. .|...|++++|+++..++++.|+.|+|||++....
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 9999999987765444432 37889999999765444455899999999976543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=314.86 Aligned_cols=292 Identities=18% Similarity=0.242 Sum_probs=242.7
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEe-------------ccCCCEEEEEEcc-CCCEEEE
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQ-------------AHDHAIRSMVWSH-NDNWMVS 203 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~-------------~h~~~V~sl~~sp-dg~~L~s 203 (713)
.+.+|.+.|++++|++ ++++||+|+.||.|+|||+.+.+....+. .|...|.+++|++ ++++|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 5678999999999999 99999999999999999999876554443 5999999999999 7789999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
++.||.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 9999999999999998877765 6788999999884 45999999999999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCc-eEEEE---------------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 281 TKS-LLVSGGKDSLVKLWDAKSGR-ELCSF---------------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 281 dg~-~L~sgs~Dg~I~IwDl~t~~-~~~~~---------------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
+++ +|++++.|+.|++||+++++ .+..+ ..|...|++++|++++++|++++.|+.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 988 68999999999999998765 33433 46788999999999999999999999999999999
Q ss_pred CeeEEEeecCC----CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eC
Q 005123 344 MKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND 417 (713)
Q Consensus 344 ~~~l~~~~~h~----~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~D 417 (713)
++.+..+..+. .....+.+.......+++++.|+.|++||+.+.. .+..+..|...|++++|++++.+|++ .|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-QITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-EEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc-ceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 87765443321 1111222323356677778889999999997766 45556689999999999999977754 89
Q ss_pred CcEEEEecCCCCCcc
Q 005123 418 HTTKFWCRNRPGDTA 432 (713)
Q Consensus 418 g~v~iWd~~~~~~~~ 432 (713)
+.|+||+++......
T Consensus 356 g~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 356 CNILAWVPSLYEPVP 370 (408)
T ss_dssp SCEEEEEECC-----
T ss_pred CeEEEEeCCCCCccC
Confidence 999999998765543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=307.01 Aligned_cols=250 Identities=21% Similarity=0.367 Sum_probs=215.9
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEE
Q 005123 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~--~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iw 255 (713)
..+.+|.+.|++++|++++++|++|+.|++|+|||++.. +.+..+.+|...|++++|++ ++++|++++.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999999999999999999999999753 56778889999999999986 48999999999999999
Q ss_pred EcCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCC------
Q 005123 256 DFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQN------ 323 (713)
Q Consensus 256 Dl~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspd------ 323 (713)
|+++++ .+..+..|...|.+++|+++ +.+|++++.|++|++||++++. ....+.+|...|.+++|+++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 55677889999999999997 8899999999999999998763 24567789999999999996
Q ss_pred -------CCEEEEEECCCeEEEEECCCCe----eEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCc-
Q 005123 324 -------GNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP- 389 (713)
Q Consensus 324 -------g~~Latgs~Dg~I~IwDl~t~~----~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~- 389 (713)
+++|++|+.|++|+|||+++++ .+..+.+|...|.+++|+|+. +.+|++++.|++|+|||++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 567888999999999999943 58999999999999999976432
Q ss_pred -eEEEe--cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 390 -QVEIH--NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 -~~~~~--~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
..... ..|...|++++|++++.+|++ .|++|+||+.+..+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 22333 457889999999999977764 89999999986543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=363.94 Aligned_cols=247 Identities=19% Similarity=0.378 Sum_probs=231.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|++++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|++++++|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 218 NNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++.+..+..|...|.+++|++ ++.++++++.|++|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 999999999999999999999 556899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEE-------------------------------------------------------ccCCCCeEEEEE
Q 005123 296 LWDAKSGRELCSF-------------------------------------------------------HGHKNMVLCVKW 320 (713)
Q Consensus 296 IwDl~t~~~~~~~-------------------------------------------------------~~h~~~I~si~f 320 (713)
+||+++++....+ .+|...|.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 9999876544332 156778999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+++++++++++.|+.|++||+.+++.+..+.+|...|++++|++ ++.+|++++.||.|++||+.
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHH
T ss_pred cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999 78999999999999999853
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=309.11 Aligned_cols=252 Identities=19% Similarity=0.323 Sum_probs=224.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIK 211 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~ 211 (713)
..+.+|++.|++++|++++++||+++.||.|+|||+.+. +....+..|...|++++|++ |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456899999999999999999999999999999998876 46677889999999999999 699999999999999
Q ss_pred EEEcCCC---------ceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCeeEEEEc-------------
Q 005123 212 YWQNNMN---------NVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLT------------- 267 (713)
Q Consensus 212 vwdl~~~---------~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~~~~~l~------------- 267 (713)
|||++++ +....+..|...|.+++|+++ +++|++++.|+.|++||+++.+.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 456777889999999999999 9999999999999999998765433222
Q ss_pred cCCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCC----CEEEEEECCCeEEE
Q 005123 268 GHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKL 338 (713)
Q Consensus 268 ~h~~~V~sl~~spd---g~~L~sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg----~~Latgs~Dg~I~I 338 (713)
.+...+.+++|+++ +++|++++.|+.+.+|+...++. +..+.+|...|++++|++++ ++|++++.|+.|+|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999997 89999999999998888887765 66778899999999999998 89999999999999
Q ss_pred EECCCC----------------------------------------------eeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 339 YDIRAM----------------------------------------------KELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 339 wDl~t~----------------------------------------------~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
||++++ +.+..+.+|...|++++|++ ++++|++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s 323 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSS 323 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEE
Confidence 999864 66778889999999999999 7899999
Q ss_pred EECCCcEEEEEcCCCCce
Q 005123 373 GSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~ 390 (713)
++.||.|+|||+.++...
T Consensus 324 ~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EETTSCEEEEEECTTSCE
T ss_pred ecCCCcEEEEecCcCcch
Confidence 999999999999876544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=308.83 Aligned_cols=277 Identities=16% Similarity=0.144 Sum_probs=240.9
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc---eEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl 215 (713)
..+|.+.|++++|++++++|++++.|+.|+|||+.+.+ ....+..|...|++++|+++++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 45899999999999999999999999999999998876 3455668999999999999999 9999999999999999
Q ss_pred -CCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCceEEEEEcCCCC
Q 005123 216 -NMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 216 -~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
++++. ..+.. |...|.+++|++ +++|++++.|+.|++||+++ .+.+..+. +...|.+++|++++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 77765 55677 999999999999 99999999999999999987 55555555 88899999999876
Q ss_pred EEEEEeCCCcEEEEECCC-Cce--EEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC------eeEEEeecC
Q 005123 284 LLVSGGKDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM------KELESFRGH 353 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t-~~~--~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~------~~l~~~~~h 353 (713)
|++++.|+.|++||+++ +.. ......+...|.+++|++ ++++|++++.|+.|+|||++.. +.+..+..|
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999999998 543 344556788999999999 9999999999999999999887 777888888
Q ss_pred CC---------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc-CCCeEEEEEcCCCcEEEE--eCCc-E
Q 005123 354 RK---------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCS--NDHT-T 420 (713)
Q Consensus 354 ~~---------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~laS--~Dg~-v 420 (713)
.. .|++++|++ ++++|++++.||.|++||+.+... +..+..| ...|++++ +++.+|++ .|++ .
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~ 317 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSDNILCLATSDDTFK 317 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECSSEEEEEEECTHHH
T ss_pred cccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhH-hhhhhcccCCCceEec--CCCCeEEEEecCCccc
Confidence 65 999999999 788999999999999999987764 4445566 99999999 88866654 8998 6
Q ss_pred EEEec
Q 005123 421 KFWCR 425 (713)
Q Consensus 421 ~iWd~ 425 (713)
+.|..
T Consensus 318 ~~~~~ 322 (342)
T 1yfq_A 318 TNAAI 322 (342)
T ss_dssp HCSSS
T ss_pred ccccc
Confidence 65554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=340.69 Aligned_cols=273 Identities=10% Similarity=0.053 Sum_probs=217.1
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceE----EEEeccCCCEEEEEEccC------CCEEEEEeCCCcEEEEEcCCCce---
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHN------DNWMVSGDDGGAIKYWQNNMNNV--- 220 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~----~~l~~h~~~V~sl~~spd------g~~L~sgs~DG~I~vwdl~~~~~--- 220 (713)
++++.|++++.|++|+|||+.+++.. ..+..|.+.|.+|+|+++ +.+||+++.||+|+|||+.++..
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 33444555668899999998876642 346677899999999986 57999999999999999987642
Q ss_pred --------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-eEEEEccCCCceEEE--EEcCCC-CEEEEE
Q 005123 221 --------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSV--DWHPTK-SLLVSG 288 (713)
Q Consensus 221 --------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-~~~~l~~h~~~V~sl--~~spdg-~~L~sg 288 (713)
...+..|...|++++|+++ ..|++|+.||+|++||++++. ....+.+|...|.+| +|++++ .+|+++
T Consensus 251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 251 VFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred cceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 2356678899999999975 489999999999999998763 455688899999999 567787 899999
Q ss_pred eCCCcEEEEECCCCceEEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+.|++|+|||+++++++..+.+|.. .|.+++|+|++..|++++.|++|+|||++++.++..+.+|...|++|+|+| +
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~ 408 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-L 408 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-S
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-C
Confidence 9999999999999887777766543 588999999999999999999999999999998888999999999999999 7
Q ss_pred CCEEEEEECCCcEEEEEcCCCC-------------------------------------------ceEEEecccCCCeEE
Q 005123 367 EEYFVSGSLDGSIFHWLVGHET-------------------------------------------PQVEIHNVHDNTVWD 403 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~-------------------------------------------~~~~~~~~h~~~V~~ 403 (713)
+.+|++|+.||+|+|||+.... .....+.+|...|++
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCC
T ss_pred CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEE
Confidence 8899999999999999853210 001122347788999
Q ss_pred EEEcCCC---cEEEE--eCCcEEEEecCCC
Q 005123 404 LAWHPIG---YLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 404 l~~spdg---~~laS--~Dg~v~iWd~~~~ 428 (713)
|+|++++ .++|+ .||.||||++...
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 9999996 47765 7899999998553
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=317.36 Aligned_cols=279 Identities=11% Similarity=0.098 Sum_probs=227.6
Q ss_pred CCceEEEEEccCCCEEEEEECCC-------cEEEEeCCCCce----------EEEEeccCCCEEEEEEccCCCEEEEEe-
Q 005123 144 RCSINRVLWTPTGRRLITGSQSG-------EFTLWNGQSFNF----------EMILQAHDHAIRSMVWSHNDNWMVSGD- 205 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg-------~V~Iwd~~t~~~----------~~~l~~h~~~V~sl~~spdg~~L~sgs- 205 (713)
.-+|+|++|++|+++||+|+.+. .|+||++..... ...+..|+..|.+++++ ++.+++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997643 599999765432 22456788889888874 56676654
Q ss_pred ----------CCCcEEEEEcCCCceeee---------eccCCCCeeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEE
Q 005123 206 ----------DGGAIKYWQNNMNNVKAN---------KSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEER 264 (713)
Q Consensus 206 ----------~DG~I~vwdl~~~~~~~~---------~~~~~~~V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~ 264 (713)
.|+.|++|+++..+.... ...+...+.+++|++|+++|++++ .|++|+|||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 567899999876532111 122345689999999999987655 68999999999999988
Q ss_pred EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECCC----eEEE
Q 005123 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKL 338 (713)
Q Consensus 265 ~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg----~I~I 338 (713)
.+. |...|.+|+|+||+++|++++. +.+++|+..+++.+.. ...|...|.+++|++++++|++++.|+ .|++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 7788999999999999999985 4577777777776544 345788899999999999999999887 6889
Q ss_pred EECCCCee----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE
Q 005123 339 YDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 339 wDl~t~~~----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 414 (713)
||+..... ...+..|...|++++|+| ++++||+|+.|++|+|||+++.+.+..+..+|...|++|+|+||+.+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 99876653 456778999999999999 8999999999999999999888777777789999999999999998887
Q ss_pred E--eCCcEEEEecCC
Q 005123 415 S--NDHTTKFWCRNR 427 (713)
Q Consensus 415 S--~Dg~v~iWd~~~ 427 (713)
| .|++||||++..
T Consensus 329 S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 329 SVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEEcCC
Confidence 5 999999999853
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=323.73 Aligned_cols=281 Identities=18% Similarity=0.269 Sum_probs=241.6
Q ss_pred ceEEEEEccCCCEEE-EEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC-
Q 005123 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN- 218 (713)
Q Consensus 146 ~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~- 218 (713)
....++++++...++ +++.||.|+|||+.+. +....+.+|.+.|++++|++ ++++|++++.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345688888775444 5788999999998664 23445778999999999999 8999999999999999999987
Q ss_pred ------ceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCCCCEEEEEe
Q 005123 219 ------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 219 ------~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs 289 (713)
+.+..+..|...|++++|++++ ++|++++.|++|++||+++++.+..+ ..|...|.+++|++++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5567788899999999999998 69999999999999999999999999 78999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEE-ccCCCC-eEEEEEcCCCCEEEEE---ECCCeEEEEECCCCee-EEEee-cCCCCeEEEEE
Q 005123 290 KDSLVKLWDAKSGRELCSF-HGHKNM-VLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKE-LESFR-GHRKDVTALAW 362 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~-~~h~~~-I~si~fspdg~~Latg---s~Dg~I~IwDl~t~~~-l~~~~-~h~~~V~sl~f 362 (713)
.|+.|+|||+++++.+..+ ..|... +.+++|++++++|+++ +.|+.|+|||+++++. +.... .|...|.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 677765 8999999999999999 7899999999998664 33332 46788999999
Q ss_pred eCCCCCEEE-EEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 363 HPFHEEYFV-SGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 363 sp~~~~~la-sgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
++ ++.+|+ +++.||.|++||+.+....+..+.. |...|.+++|++++.++++.|+.+++|++..
T Consensus 276 s~-~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 276 DP-DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp ET-TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred cC-CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 99 566665 5667999999999887753333333 5689999999999999999999999999975
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=313.86 Aligned_cols=247 Identities=15% Similarity=0.219 Sum_probs=225.5
Q ss_pred eeCCCCCceEEEEEccC----C---CEEEEEECCCcEEEEeCCCCce-----EEEEecc-----CCCEEEEEEc----cC
Q 005123 139 SLNKNRCSINRVLWTPT----G---RRLITGSQSGEFTLWNGQSFNF-----EMILQAH-----DHAIRSMVWS----HN 197 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd----g---~~Latgs~dg~V~Iwd~~t~~~-----~~~l~~h-----~~~V~sl~~s----pd 197 (713)
.+.+|...|++++|+++ + ++|++++.|+.|+|||+.+.+. ...+..| ...|.+++|+ ++
T Consensus 57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC
Confidence 44589999999999999 9 9999999999999999998887 8888888 5999999999 99
Q ss_pred CCE-EEEEeCCCcEEEEEcCC------Cceee-----ee-------ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 198 DNW-MVSGDDGGAIKYWQNNM------NNVKA-----NK-------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 198 g~~-L~sgs~DG~I~vwdl~~------~~~~~-----~~-------~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
+++ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++ +|++++.|+.|++||++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 999 99999999999999988 65554 55 4478899999999999 99999999999999999
Q ss_pred CCeeEEEEcc---C---CCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEcc-------------CCCCeE
Q 005123 259 RCQEERSLTG---H---GWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHG-------------HKNMVL 316 (713)
Q Consensus 259 ~~~~~~~l~~---h---~~~V~sl~~spdg~~L~sgs~D---g~I~IwDl~t~~~~~~~~~-------------h~~~I~ 316 (713)
+++.+..+.. | ...|.+++|++++++|++++.| +.|++||+++++.+..+.. |...|.
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 9999999998 8 9999999999999999999999 9999999999999999988 999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee------cC---------------CCCeEEEEEeCCCC--------
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------GH---------------RKDVTALAWHPFHE-------- 367 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~------~h---------------~~~V~sl~fsp~~~-------- 367 (713)
+++|++++++|++++.|+.|+|||+++++.+..+. .| ...|++++|++ ++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~ 374 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGAD 374 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-cccccccccc
Confidence 99999999999999999999999999999999999 88 89999999999 55
Q ss_pred --CEEEEEECCCcEEEEEcCCC
Q 005123 368 --EYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 368 --~~lasgs~DG~I~Iwd~~~~ 387 (713)
.+|++++.||.|+|||++++
T Consensus 375 ~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 375 LNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCEEEEEETTTEEEEEEEEC-
T ss_pred ccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998664
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=295.36 Aligned_cols=274 Identities=24% Similarity=0.434 Sum_probs=232.5
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+++|+||+++ +||+|. |++|+|||+++++.+..+. .|...|++++|++++++|++|+.||+|+|||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999886 676664 9999999999999888775 56778999999999999999999999999999999999999
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~ 303 (713)
..|...+.++.+ ++..|++++.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.|+.|+|||+++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999988877665 5779999999999999998765 4566778899999999999999999999999999999999865
Q ss_pred e----EEEEccCCCCeEEEEEcCCCCEE---EEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE--
Q 005123 304 E----LCSFHGHKNMVLCVKWNQNGNWV---LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-- 374 (713)
Q Consensus 304 ~----~~~~~~h~~~I~si~fspdg~~L---atgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-- 374 (713)
. ......+...|.++++++++..+ ++++.++.|+|||.+......... +...+..+.|++ .+..+++++
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~ 261 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGF 261 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECT
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEc
Confidence 3 34556688899999999965433 355678999999999887766554 777899999999 556555544
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~ 427 (713)
.|+.|+|||+++... +..+.+|.+.|++|+|++++.+|++ .|++|+|||+..
T Consensus 262 ~d~~i~iwd~~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 799999999987664 5556789999999999999977754 999999999854
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=309.68 Aligned_cols=251 Identities=20% Similarity=0.328 Sum_probs=223.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC--CCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vw 213 (713)
..+.+|.+.|++++|++++++||+|+.||.|+|||+. +.+.+..+..|...|++++|+++ +++|++++.||.|+||
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4567899999999999999999999999999999987 56677888999999999999977 8999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCCe--eEEEEccCCCceEEEEEcC-------
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHP------- 280 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~~--~~~~l~~h~~~V~sl~~sp------- 280 (713)
|+++++ ....+..|...|.+++|+++ +.+|++++.|+.|++||+++.. ....+..|...|.+++|++
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 999986 66777789999999999999 9999999999999999998763 4456678999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCCc----eEEEEccCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005123 281 ------TKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (713)
Q Consensus 281 ------dg~~L~sgs~Dg~I~IwDl~t~~----~~~~~~~h~~~I~si~fspd---g~~Latgs~Dg~I~IwDl~t~~-- 345 (713)
++++|++++.|+.|++||+++++ .+..+..|...|++++|+++ +++|++++.|+.|+|||+++++
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 69999999999999999998765 44567789999999999999 8999999999999999999863
Q ss_pred ---eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 346 ---~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.+.....|...|++++|++ ++.+|++++.||.|+||+++....
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTE
T ss_pred ceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCc
Confidence 2223334888999999999 788999999999999999975543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=334.19 Aligned_cols=246 Identities=27% Similarity=0.457 Sum_probs=220.1
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+.+|...|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||+.
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeee---ccCCCCeeEEEEecCC--CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 217 MNNVKANK---SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 217 ~~~~~~~~---~~~~~~V~~l~fs~dg--~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
........ ..|...|.+++|++++ ..|++++.|++|++||+++.+....+.+|...|++++|++++++|++++.|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 65433322 4688899999999987 579999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-----------------
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR----------------- 354 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~----------------- 354 (713)
++|+|||+++++.+..+. +...|.+++|++++.+|++++ |+.|+|||+++++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660 (694)
T ss_dssp SBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred CeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCc
Confidence 999999999999887776 456799999999998887765 5669999999998887765332
Q ss_pred --CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 355 --KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 355 --~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..+++++|++ ++++|++|+.||.|+||++.
T Consensus 661 ~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 661 KVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred eeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 1378999999 89999999999999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=351.25 Aligned_cols=290 Identities=23% Similarity=0.356 Sum_probs=257.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp--dg~~L~sgs~DG~I~vwdl 215 (713)
..+.+|.+.|++++|++++++||+++.|+.|+|||+.+++.+..+..|...|.+++|++ ++.++++++.|+.|++||+
T Consensus 651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~ 730 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999 4568999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-----------------------------
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL----------------------------- 266 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l----------------------------- 266 (713)
++++....+..|...|++++|++++++|++++.||+|++||+.+++....+
T Consensus 731 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp TSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred CCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 999999999999999999999999999999999999999998766543322
Q ss_pred --------------------------ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEE
Q 005123 267 --------------------------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320 (713)
Q Consensus 267 --------------------------~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~f 320 (713)
.+|...|.+++|+++++++++++.|+.|++||+.+++.+..+.+|...|++++|
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 156778999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECC----------------------------------------------------------
Q 005123 321 NQNGNWVLTASKDQIIKLYDIR---------------------------------------------------------- 342 (713)
Q Consensus 321 spdg~~Latgs~Dg~I~IwDl~---------------------------------------------------------- 342 (713)
++++++|++++.|+.|++||+.
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 9999999999999988888843
Q ss_pred ---------------------CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe
Q 005123 343 ---------------------AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (713)
Q Consensus 343 ---------------------t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V 401 (713)
+++.+..+.+|...|++++|++ ++++|++++.||.|++||+.++.. .....|...|
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~v 1047 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQETV 1047 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEE--ECCBCCSSCE
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCce--EEEecCCCcE
Confidence 2233445567888999999999 789999999999999999977653 3455789999
Q ss_pred EEEEEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 402 WDLAWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 402 ~~l~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
.+++|++++.++++ .|++|++||+.....
T Consensus 1048 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp EEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred EEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence 99999999977754 999999999976543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=325.18 Aligned_cols=280 Identities=18% Similarity=0.305 Sum_probs=252.5
Q ss_pred eeCCCCCc-eEEEEEcc--CCCEEEEEECCCcEEEEeCCCC--------ceEEEEeccCCCEEEEEEccCCCEEEEEeCC
Q 005123 139 SLNKNRCS-INRVLWTP--TGRRLITGSQSGEFTLWNGQSF--------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (713)
Q Consensus 139 ~l~~H~~~-V~~v~~sp--dg~~Latgs~dg~V~Iwd~~t~--------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 207 (713)
.+.+|.+. |++++|++ ++++||+++.||.|+|||+.++ +....+..|...|.+++|++++++|++++.+
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 56789999 99999999 9999999999999999999744 6777888899999999999999999999987
Q ss_pred ----CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEEEccCCC---ceEEEEEc
Q 005123 208 ----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGW---DVKSVDWH 279 (713)
Q Consensus 208 ----G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~---~V~sl~~s 279 (713)
+.|++|| .++.+..+..|...|.+++|++++. .|++++.|+.|++||+.+++.+..+..|.. .|.+++|+
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred CCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 6788887 6677788889999999999999998 899999999999999999999999999998 99999999
Q ss_pred CC-CCEEEEEeCCCcEEEEECCCCceEEEE-c---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecC-
Q 005123 280 PT-KSLLVSGGKDSLVKLWDAKSGRELCSF-H---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH- 353 (713)
Q Consensus 280 pd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~-~---~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h- 353 (713)
++ +++|++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 99 999999999999999999999999988 5 799999999999 9999999999999999999999999998877
Q ss_pred ---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 354 ---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 354 ---~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
...+.++.|+ ++.+|++++.||.|++||+.+.. ....+..|...|++++| ++ .+.++.|+.|++|+++
T Consensus 295 ~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 295 QQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred CcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 3678888886 68899999999999999997744 44556678889999999 87 6666688888888865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=335.31 Aligned_cols=290 Identities=20% Similarity=0.308 Sum_probs=255.7
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|++||+++
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 128 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-ceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceEEEEEcC--CCCEEEEEeCCC
Q 005123 218 N-NVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHP--TKSLLVSGGKDS 292 (713)
Q Consensus 218 ~-~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~sl~~sp--dg~~L~sgs~Dg 292 (713)
+ .....+..|...|.+++|++ +++.|++++.|++|++||+.+.+....+..+. ..|.+++|++ ++.+|++++.|+
T Consensus 129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 208 (814)
T 3mkq_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (814)
T ss_dssp TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence 7 66777788999999999999 88999999999999999998887777766554 8899999999 999999999999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
.|++||+++++.+..+..|...|++++|++++++|++++.||.|++||+.+++.+..+..|...|.+++|++++..++++
T Consensus 209 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999954454445
Q ss_pred EECCCcEEEEEcCCCCceEEE------------------------------------------ecccCCCeEEEEEcCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEI------------------------------------------HNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~------------------------------------------~~~h~~~V~~l~~spdg 410 (713)
++.|+.+.+|++........+ ...+...+.+++|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 368 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG 368 (814)
T ss_dssp EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS
T ss_pred EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC
Confidence 555777889987654322211 12234568899999999
Q ss_pred cEEEE-eCCcEEEEecCC
Q 005123 411 YLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 411 ~~laS-~Dg~v~iWd~~~ 427 (713)
.+++. .|+.+.||++..
T Consensus 369 ~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 369 RFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp SEEEEEETTEEEEEETTT
T ss_pred CEEEEecCCEEEEEECcc
Confidence 87765 899999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=308.59 Aligned_cols=261 Identities=20% Similarity=0.348 Sum_probs=221.2
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCce
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~~~ 220 (713)
.|...|++++|++++++|++|+.||.|+|||+.+++.+..+..|...|.+++| ++++|++++.||.|++||++ ....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 48899999999999999999999999999999999999999999999999999 56899999999999999999 4566
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEe--CCCcEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGG--KDSLVKLW 297 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs--~Dg~I~Iw 297 (713)
...+..|...|.+++|++++++|++++.|+.|++||+++.+.+..+..|...|.+++|++++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 777889999999999999999999999999999999999999999999999999999999764 566654 79999999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
|+++++.+..+. +...|.+++|++++++|++++ .|+.|+|||+++++.. ..+.+|...|.+++|++ ++.+|+++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 999999988886 667899999999999999954 8999999999986554 44678999999999999 89999999
Q ss_pred ECCCcEEEEEcCCCCceEEEecccCCCeEEEEE
Q 005123 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (713)
+.||.|++||+.++.........+.....++.|
T Consensus 368 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~~ 400 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400 (401)
T ss_dssp CTTSEEEEEECCC--------------------
T ss_pred eCCCcEEEEECCCCccccccccccCCCccceec
Confidence 999999999998877655554444444444443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=340.82 Aligned_cols=283 Identities=12% Similarity=0.138 Sum_probs=229.8
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
.|...|++|+|++ +++|++++.|++|+|||+.+++.+..+. |...|++++|++++++|++|+.||.|++||+++++..
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999888886 7789999999999999999999999999999988753
Q ss_pred -----------eeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccC------------------CC
Q 005123 222 -----------ANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------------------GW 271 (713)
Q Consensus 222 -----------~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h------------------~~ 271 (713)
..+..|...|++++|+++ +..|++++.|++| +||+++++.+..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 234568899999999996 4789999999999 9999999988888755 46
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--Ec---c-------------CCCCeEEEE--------------
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FH---G-------------HKNMVLCVK-------------- 319 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~--~~---~-------------h~~~I~si~-------------- 319 (713)
.|++++|++++++|++++.|++|+|||+++++.+.. +. . +...|++++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999977654321 00 0 011111111
Q ss_pred --------------------------------------------------------------------------------
Q 005123 320 -------------------------------------------------------------------------------- 319 (713)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (713)
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence
Q ss_pred ----------------------------------------------------------------------EcCCCCEEEE
Q 005123 320 ----------------------------------------------------------------------WNQNGNWVLT 329 (713)
Q Consensus 320 ----------------------------------------------------------------------fspdg~~Lat 329 (713)
|++++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 2345667778
Q ss_pred EECCCeEEEEECCCCeeE----EE--ee-----cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC----------
Q 005123 330 ASKDQIIKLYDIRAMKEL----ES--FR-----GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---------- 388 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~l----~~--~~-----~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---------- 388 (713)
|+.|++|++||+.+++.. .. +. +|...|++|+|+| ++++||+|+.||+|+|||+.+.+
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 888888888887765321 11 11 6888999999999 89999999999999999997552
Q ss_pred ----------------------------------ceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 389 ----------------------------------PQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 389 ----------------------------------~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
..+..+.+|.+.|++|+|++|| +||+ .|++|+|||++...
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence 1245666799999999999999 7764 89999999985543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=301.24 Aligned_cols=282 Identities=17% Similarity=0.197 Sum_probs=238.0
Q ss_pred EeeCCCCCceEEEEEccC---CCEEEEEECCCcEEEEeCCC-CceE-EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 138 TSLNKNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQS-FNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spd---g~~Latgs~dg~V~Iwd~~t-~~~~-~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..+.+|.+.|+|++|+++ +++|++|+.||.|+|||+.+ +..+ ..+..|...|++++|++++++|++++.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 357899999999999999 59999999999999999987 4444 788899999999999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEE--ecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSF--CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~f--s~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
||+++++.+. +..|...|++++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+. ...+++++.
T Consensus 113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 188 (368)
T 3mmy_A 113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATA 188 (368)
T ss_dssp EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEG
T ss_pred EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeC
Confidence 9999988766 4579999999999 8899999999999999999999998888887554 67777776 458899999
Q ss_pred CCcEEEEECCCCceEEEEc--cCCCCeEEEEEcCCCCE----EEEEECCCeEEEEECCCC---eeEEEeecCCC------
Q 005123 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAM---KELESFRGHRK------ 355 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~----Latgs~Dg~I~IwDl~t~---~~l~~~~~h~~------ 355 (713)
|+.+++||++......... .+...+.++++..+... |++++.|+.|+|||++.. +.+..+..|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 9999999998765443332 23455666766665544 999999999999999987 55777787776
Q ss_pred ------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 356 ------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 356 ------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
.|++++|++ ++++|++++.||.|+|||+++.. .+..+..|...|++++|++++.+|++ .|+..+.|++
T Consensus 269 ~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 269 APQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDART-KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTE-EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCc-EEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 799999999 78899999999999999998765 45566689999999999999976654 6665555554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=292.29 Aligned_cols=249 Identities=25% Similarity=0.434 Sum_probs=223.0
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+.+|...|++++|++++++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+.
T Consensus 79 ~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCce-eeeeccCCCCeeEEEEecCC--CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 217 MNNV-KANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 217 ~~~~-~~~~~~~~~~V~~l~fs~dg--~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
.... ......|...|..++|+.++ .++++++.|++|++||+++++.+..+.+|...|++|+|++++++|++++.|+.
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 6644 44456788999999998765 56889999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---------cCCCCeEEEEEeC
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---------GHRKDVTALAWHP 364 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~---------~h~~~V~sl~fsp 364 (713)
|+|||+++.+.+..+.. ...|.+++|++++. +++++.|+.|+|||+++...+..+. .|...|++++|++
T Consensus 239 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp EEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred EEEEEeccCceeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence 99999999999888874 56799999999876 4556679999999999887766553 5788999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCC
Q 005123 365 FHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 365 ~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
++++|++|+.||.|+|||++++.
T Consensus 317 -dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -TSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcC
Confidence 78999999999999999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=295.48 Aligned_cols=247 Identities=13% Similarity=0.187 Sum_probs=227.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC-----CcEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYW 213 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vw 213 (713)
.+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+. +...|.+++|++++++|++++.+ +.|++|
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 466899999999999999999999999999999999999988888 88999999999999999999999 999999
Q ss_pred EcCCCc-----------eeeeeccCCC--CeeEEEEecCCCEEEEEECCCeEEEEEcCC-CeeEEEEccCCCceEEEEEc
Q 005123 214 QNNMNN-----------VKANKSAHKE--SVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 214 dl~~~~-----------~~~~~~~~~~--~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~~~~~l~~h~~~V~sl~~s 279 (713)
|+.... ....+..+.. .+.+++|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|+
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence 987653 2223344444 899999999999999999999999999998 78888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC--------------eEEEEECCCCe
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--------------IIKLYDIRAMK 345 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg--------------~I~IwDl~t~~ 345 (713)
+++++|++++.|+.|++||+++++.+..+. +...+.+++|++++++|++++.++ .|++||+.+++
T Consensus 228 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999999999999999988887 778899999999999999999988 89999999999
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+..+..|...|++++|++ ++++|++++.||.|+||+++...
T Consensus 307 ~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 307 EIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred chhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 9999999999999999999 78999999999999999997543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=308.28 Aligned_cols=249 Identities=20% Similarity=0.362 Sum_probs=208.8
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEE
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 256 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwD 256 (713)
.+.+|.+.|++++|++++++|++|+.|++|+|||++++. .+..+.+|...|.+++|++ ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998774 4567789999999999985 489999999999999999
Q ss_pred cCCC--eeEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce---EEEEccCCCCeEEEEEcCC------
Q 005123 257 FARC--QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQN------ 323 (713)
Q Consensus 257 l~~~--~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~~---~~~~~~h~~~I~si~fspd------ 323 (713)
++++ +.+..+.+|...|++++|+++ +.+|++++.|++|++||+++... ...+..|...|.+++|+++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 356677889999999999997 78999999999999999987642 3445678889999999997
Q ss_pred -----------CCEEEEEECCCeEEEEECCCC---eeEEEeecCCCCeEEEEEeCCC---CCEEEEEECCCcEEEEEcCC
Q 005123 324 -----------GNWVLTASKDQIIKLYDIRAM---KELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 324 -----------g~~Latgs~Dg~I~IwDl~t~---~~l~~~~~h~~~V~sl~fsp~~---~~~lasgs~DG~I~Iwd~~~ 386 (713)
+++|++++.|++|+|||+++. +.+..+.+|...|.+++|++++ +.+|++++.|++|+|||+++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999754 5677889999999999999943 37999999999999999976
Q ss_pred C---CceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 387 E---TPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 387 ~---~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
. ......+..|...|++++|++++.+|++ .|++|+||+.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 2 1122344568899999999999977654 89999999986543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=305.92 Aligned_cols=241 Identities=15% Similarity=0.267 Sum_probs=219.0
Q ss_pred CCCCceEEEEEccC----CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spd----g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~ 216 (713)
.|...|++++|+++ +++|++|+.||.|+|||+.+++.+..+..|...|++++|++ ++++|++++.||.|++||++
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 48889999999999 67999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCceeeee---ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--------------------------
Q 005123 217 MNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-------------------------- 267 (713)
Q Consensus 217 ~~~~~~~~---~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-------------------------- 267 (713)
+++.+..+ ..|...|.+++|++++++|++++.|+.|++||+++++.+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 99888887 6899999999999999999999999999999998765443332
Q ss_pred --cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------EEEEccCCCCeEEEEEcCC--CCEEEE
Q 005123 268 --GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--------------LCSFHGHKNMVLCVKWNQN--GNWVLT 329 (713)
Q Consensus 268 --~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--------------~~~~~~h~~~I~si~fspd--g~~Lat 329 (713)
.|...|.+++|+ +++|++++.|+.|++||+++++. +..+..|...|++++|+++ +++|++
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 388999999999 78999999999999999988654 7778889999999999999 999999
Q ss_pred EECCCeEEEEECCCCe----eEEEeecC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 330 ASKDQIIKLYDIRAMK----ELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~----~l~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
++.|+.|+|||+++++ .+..+..| ...|++++|++ ++++|++++.||.|+|||+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 9999999999999875 34477777 78999999999 89999999999999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=310.72 Aligned_cols=283 Identities=15% Similarity=0.148 Sum_probs=238.1
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCc---eEEEEec-------------------------------------
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQA------------------------------------- 184 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---~~~~l~~------------------------------------- 184 (713)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966655 57899999999888 5555543
Q ss_pred -----------------cCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcC--CCceeeeec--cCCCCeeEEEEecCCCE
Q 005123 185 -----------------HDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNN--MNNVKANKS--AHKESVRDLSFCRTDLK 242 (713)
Q Consensus 185 -----------------h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~--~~~~~~~~~--~~~~~V~~l~fs~dg~~ 242 (713)
|.+.|++++|++++++| ++++.||.|+|||+. +++.+..+. .+...|++++|++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 23369999999999996 889999999999999 777777765 56789999999999999
Q ss_pred EEEEECCCeEEEEEcCCCeeEE----EEccCCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceEEE-EccCCCC
Q 005123 243 FCSCSDDTTVKVWDFARCQEER----SLTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNM 314 (713)
Q Consensus 243 Las~s~Dg~I~iwDl~~~~~~~----~l~~h~~~V~sl~~spd---g~~L~sgs~Dg~I~IwDl~t~~~~~~-~~~h~~~ 314 (713)
|++++.|+.|++||+.+.+... .+.+|...|.+++|+++ +++|++++.|+.|+|||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998776544 66789999999999999 99999999999999999999988877 5589999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-------------------------CCCCeEEEEEeCCCCCE
Q 005123 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-------------------------HRKDVTALAWHPFHEEY 369 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-------------------------h~~~V~sl~fsp~~~~~ 369 (713)
|++++|+ ++++|++++.|+.|+|||+++++.+..+.. ....|.+++|++ ++.+
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPF 321 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCE
Confidence 9999999 999999999999999999999998887763 245799999999 7888
Q ss_pred EEEEE-CCCcEEEEEc--CCCC--ceEEEecccCCCeEEEEEcCCCcEEEEe--------CCcEEEEecCCCCCc
Q 005123 370 FVSGS-LDGSIFHWLV--GHET--PQVEIHNVHDNTVWDLAWHPIGYLLCSN--------DHTTKFWCRNRPGDT 431 (713)
Q Consensus 370 lasgs-~DG~I~Iwd~--~~~~--~~~~~~~~h~~~V~~l~~spdg~~laS~--------Dg~v~iWd~~~~~~~ 431 (713)
|++++ .|+.|+||++ .... ..+..+..| ..|++++|++++.+++.. ++.|+||.++.....
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 88888 8999999999 4332 334445556 889999999977666541 556899998765443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=299.88 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=220.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE--eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..+.+|...|++++|++++++|++++.|+.|+|||+.+++....+ ..|...|.+++|++++++|++++.|+.|++||+
T Consensus 46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 356689999999999999999999999999999999888755444 668999999999999999999999999999999
Q ss_pred CCCc----eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC------------------CCeeEEEEccCCCce
Q 005123 216 NMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA------------------RCQEERSLTGHGWDV 273 (713)
Q Consensus 216 ~~~~----~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~------------------~~~~~~~l~~h~~~V 273 (713)
+..+ .......|...|.+++|++++++|++++.|+.|++||++ .++.+..+..|...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 8876 233336688999999999999999999999999999953 567888888899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--Cee--E--
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--MKE--L-- 347 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t--~~~--l-- 347 (713)
.+++|++++++|++++.|+.|++||+++++.+..+..|...|.+++|++++++|+++ .|+.|++||+++ ++. +
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999988877 999999999987 421 0
Q ss_pred ----------------------------------EEe-ecCCCCeEEEEEeCCCC---CEEEEEECCCcEEEEEcCCCC
Q 005123 348 ----------------------------------ESF-RGHRKDVTALAWHPFHE---EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 348 ----------------------------------~~~-~~h~~~V~sl~fsp~~~---~~lasgs~DG~I~Iwd~~~~~ 388 (713)
..+ .+|...|++++|++.++ .+|++++.||.|+|||+++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 48999999999886466 999999999999999996544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=302.20 Aligned_cols=247 Identities=23% Similarity=0.413 Sum_probs=221.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|...|+||+|++||++||+|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc
Confidence 45678999999999999999999999999999999999999999999999999988 4789999999999999998865
Q ss_pred -ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe----eEEEEccCCCceEEEEEcCCC-CEEEEE--eC
Q 005123 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTK-SLLVSG--GK 290 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~----~~~~l~~h~~~V~sl~~spdg-~~L~sg--s~ 290 (713)
..+..+..|...+..+.|++++++|++++.|+.|++||+.+++ .+.....|...|.+++|++++ .+++++ +.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 4566778999999999999999999999999999999997754 345677889999999999965 455553 57
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|++|+|||+++++.+..+.. ...+.++.|+++++.|++++ .|+.|+|||+.+++.+.++.+|.+.|++|+|++ ++.
T Consensus 300 D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~ 377 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 377 (420)
T ss_dssp TCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 99999999999999888874 45799999999999998776 789999999999999999999999999999999 789
Q ss_pred EEEEEECCCcEEEEEcCCCCc
Q 005123 369 YFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~ 389 (713)
+|++|+.|++|+|||+.+...
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSC
T ss_pred EEEEEecCCeEEEEECCCCCc
Confidence 999999999999999966543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=298.94 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=213.6
Q ss_pred CCCCceEEEEEccC---CCEEEEEECCCcEEEEeCCCCc-eEEEEeccCCCEEEEEE------ccCCCEEEEEeCCCcEE
Q 005123 142 KNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVW------SHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 142 ~H~~~V~~v~~spd---g~~Latgs~dg~V~Iwd~~t~~-~~~~l~~h~~~V~sl~~------spdg~~L~sgs~DG~I~ 211 (713)
+|...|++++|+++ +++|++++.||.|++||+.+.+ .+..+..|...|.+++| ++++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68899999999999 6999999999999999999988 88899999999999965 67899999999999999
Q ss_pred EEEcCCCc-eeeeeccCCC----CeeEEE----EecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC--
Q 005123 212 YWQNNMNN-VKANKSAHKE----SVRDLS----FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-- 280 (713)
Q Consensus 212 vwdl~~~~-~~~~~~~~~~----~V~~l~----fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp-- 280 (713)
+||+++++ .+..+..+.. .|.+++ |++++++|++++.|+.|++||+++.+.... ..|...|.+++|++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 99999876 5666655444 788888 678999999999999999999999887544 55888999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC---------
Q 005123 281 -TKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM--------- 344 (713)
Q Consensus 281 -dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~--------- 344 (713)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.|+.|+|||+++.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 89999999999999999998876655444 8999999999999998 8999999999999999753
Q ss_pred ----------eeEEEeecCCCCeEEEEEeCCCCCEEE-EEECCCcEEEEEcCCCC
Q 005123 345 ----------KELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHET 388 (713)
Q Consensus 345 ----------~~l~~~~~h~~~V~sl~fsp~~~~~la-sgs~DG~I~Iwd~~~~~ 388 (713)
+.+..+..|...|++++|++ ++.+|+ +++.||.|+|||+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 46778889999999999999 566665 89999999999997643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=300.92 Aligned_cols=253 Identities=21% Similarity=0.372 Sum_probs=219.3
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTV 252 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~--~~~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I 252 (713)
+.+..+.+|...|++++|++++++|++++.||.|+|||+. +.+.+..+..|...|++++|+++ +++|++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998 55677778899999999999976 8999999999999
Q ss_pred EEEEcCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcC----
Q 005123 253 KVWDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ---- 322 (713)
Q Consensus 253 ~iwDl~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fsp---- 322 (713)
++||+++++ .+..+..|...|.+++|+++ +++|++++.|+.|++||+++.. ....+..|...|++++|++
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999887 67778889999999999999 9999999999999999999873 4456678999999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----eEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCC
Q 005123 323 ---------NGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 323 ---------dg~~Latgs~Dg~I~IwDl~t~~----~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~ 387 (713)
++++|++++.|+.|+|||+++.+ .+..+..|...|++++|++++ +.+|++++.||.|+|||+++.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998754 456778899999999999933 899999999999999999876
Q ss_pred Cce--EEEe--cccCCCeEEEEEcCCCcEEE--EeCCcEEEEecCCCC
Q 005123 388 TPQ--VEIH--NVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRNRPG 429 (713)
Q Consensus 388 ~~~--~~~~--~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~~~~ 429 (713)
... .... ..|...|++++|++++.+++ +.|+.|+||+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 422 2222 23788999999999997665 399999999997543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=290.74 Aligned_cols=250 Identities=20% Similarity=0.384 Sum_probs=218.2
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEE
Q 005123 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVK 253 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~ 253 (713)
..+.+|.+.|++++|++++++|++++.||.|+|||+.++ +....+..|...|++++|++ ++++|++++.|++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456789999999999999999999999999999999876 45666788999999999998 699999999999999
Q ss_pred EEEcCCC---------eeEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceEEEEc-------------
Q 005123 254 VWDFARC---------QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRELCSFH------------- 309 (713)
Q Consensus 254 iwDl~~~---------~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~~~~~~~------------- 309 (713)
+||++++ +.+..+..|...|.+++|+++ +++|++++.|+.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 567788889999999999999 9999999999999999999877544332
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCee--EEEeecCCCCeEEEEEeCCCC----CEEEEEECCCcEE
Q 005123 310 GHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHE----EYFVSGSLDGSIF 380 (713)
Q Consensus 310 ~h~~~I~si~fspd---g~~Latgs~Dg~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~----~~lasgs~DG~I~ 380 (713)
.+...+.+++|+++ +++|++++.|+.+.+|+...++. +..+.+|...|++++|++ ++ ++|++++.||.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEE
Confidence 57788999999997 99999999999998888887765 777888999999999999 55 7999999999999
Q ss_pred EEEcCCCC---------------------------------------------ceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 381 HWLVGHET---------------------------------------------PQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 381 Iwd~~~~~---------------------------------------------~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+||++... ..+..+.+|...|++++|++++.+|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 99997642 344456679999999999999976654
Q ss_pred --eCCcEEEEecCCCCC
Q 005123 416 --NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 --~Dg~v~iWd~~~~~~ 430 (713)
.|+.|+||+++....
T Consensus 324 ~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EETTSCEEEEEECTTSC
T ss_pred ecCCCcEEEEecCcCcc
Confidence 899999999976543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=283.61 Aligned_cols=242 Identities=19% Similarity=0.291 Sum_probs=218.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC---ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~---~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.+..|...|++++|++++++|++++.|+.|++|++.+. +.+..+..|...|.+++| ++++|++++.||.|++||
T Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d- 130 (313)
T 3odt_A 54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK- 130 (313)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-
T ss_pred EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-
Confidence 45578999999999999999999999999999997654 567788899999999999 678999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 216 NMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
.++....+..|...|.+++|++ ++++|++++.|+.|++|| ..+....+.. |...|.+++|++++. |++++.|+.
T Consensus 131 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 206 (313)
T 3odt_A 131 -EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL 206 (313)
T ss_dssp -TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred -CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe
Confidence 6677777888999999999998 899999999999999999 4456667766 889999999999988 999999999
Q ss_pred EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
|++||+++++.+..+..|...|++++|++++ .|++++.|+.|++||+++++.+..+..|...|++++|++ ++. ++++
T Consensus 207 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~ 283 (313)
T 3odt_A 207 IKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVG 283 (313)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEE
T ss_pred EEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEE
Confidence 9999999999999999999999999999999 589999999999999999999999999999999999999 556 6679
Q ss_pred ECCCcEEEEEcCCCCce
Q 005123 374 SLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~ 390 (713)
+.||.|++||+++....
T Consensus 284 ~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 284 SSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ETTSCEEEEESCGGGCC
T ss_pred eCCCcEEEEeCCCCcee
Confidence 99999999999776543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=298.88 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=206.5
Q ss_pred eCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEecc---CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+|...|++++|++ ++++|++++.|+.|+|||+.+ +.+..+..+ ...|.+++|++++++|++++.|+.|++||+
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 357999999999999 789999999999999999986 455555544 478999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCC----CeeEEEEccCCCceEEEEEcC-CCCEEEEEe
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~----~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs 289 (713)
+++.+..+..|...|.+++|+++++ +|++++.|++|++||+++ ...+..+ .|...|.+++|++ ++++|++++
T Consensus 193 -~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 193 -DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp -TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred -CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 5667778889999999999999998 999999999999999987 5566666 6899999999999 999999999
Q ss_pred CCCcEEEEECCCCceEEEEccCC-----------------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec
Q 005123 290 KDSLVKLWDAKSGRELCSFHGHK-----------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h~-----------------~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
.|+.|+|||+++++.+..+..|. ..+..++|++++++ +++.|+.|+|||+++++.+..+..
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 99999999999988776665442 23344556666655 667899999999999999999987
Q ss_pred --CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 353 --HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 353 --h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
|...+..++|++ ++.+|++++ |+.|+|||+++
T Consensus 349 ~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 349 PNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 457788889999 789999997 99999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=335.83 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=199.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
...+|.+.|+|++|++++++||+|+.||.|+|||..+.+....+ .|...|++|+|++ +++|++++.|++|+|||++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34589999999999999999999999999999999887665544 4788999999999 889999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE-----------EEEccCCCceEEEEEcCC-CCEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-----------RSLTGHGWDVKSVDWHPT-KSLLV 286 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~-----------~~l~~h~~~V~sl~~spd-g~~L~ 286 (713)
+.+..+. +...|++++|++++++|++++.||+|++||+++++.. ..+.+|...|.+|+|+|+ +..|+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 8887775 6689999999999999999999999999999987753 223568889999999996 57899
Q ss_pred EEeCCCcEEEEECCCCceEEEEccC------------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHGH------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~h------------------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
+++.|+.| |||+++++.+..+..| ...|++++|+++|++|++++.|++|+|||+++++.+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999988888755 4679999999999999999999999999999988765
Q ss_pred E--e---ec-------------CCCCeEEEEEeC----CCCCEEEEEECC
Q 005123 349 S--F---RG-------------HRKDVTALAWHP----FHEEYFVSGSLD 376 (713)
Q Consensus 349 ~--~---~~-------------h~~~V~sl~fsp----~~~~~lasgs~D 376 (713)
. + .. |...|++++|++ ++..+|++++.|
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 3 2 11 244699999954 222456666544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=301.88 Aligned_cols=247 Identities=11% Similarity=0.172 Sum_probs=209.7
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~--~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
.+..+...|++++|++++++|++++.|+.|+|||+.++ +.+..+..|...|.+++|++++++|++++.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34556789999999999999999999999999999988 7778888999999999999999999999999999999998
Q ss_pred CCe---eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEcc-CCCCeEEEEEcCCCCEEEEEE
Q 005123 259 RCQ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHG-HKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 259 ~~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---~~~~~~~-h~~~I~si~fspdg~~Latgs 331 (713)
+++ ....+..|...|.+++|++++++|++++.|+.|++||+++++ .+..+.. |...|++++|++++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 876 567778899999999999999999999999999999999877 4677777 999999999999999999999
Q ss_pred CCCeEEEEECC------------------CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---
Q 005123 332 KDQIIKLYDIR------------------AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ--- 390 (713)
Q Consensus 332 ~Dg~I~IwDl~------------------t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~--- 390 (713)
.|+.|++||++ .++.+..+ .|...|++++|++ ++++|++++.||.|+|||+++....
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 99999999985 35566777 8999999999999 7899999999999999999887652
Q ss_pred EEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
+..+..|...|++++|++++.++++ .|+.+.+|+....+
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 283 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESG 283 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC--
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCc
Confidence 3455678999999999999988876 67777788876544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=300.38 Aligned_cols=255 Identities=24% Similarity=0.415 Sum_probs=217.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..+.+|.+.|++++| ++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||+++
T Consensus 167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSS
T ss_pred EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCC
Confidence 456789999999999 78999999999999999999999999999999999999996 56999999999999999998
Q ss_pred Ccee---eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 NNVK---ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 ~~~~---~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
+... ..+..|...|.+++| ++++|++++.|++|++||+++++.+..+..|...|.+++|+ +++|++++.|+.|
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i 318 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 318 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeE
Confidence 7654 567789999999999 78899999999999999999999999999999999999995 7899999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------eEEEeecCCCCeEEEEEeCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~---------~l~~~~~h~~~V~sl~fsp~ 365 (713)
++||+++++.+..+.+|...|.+++| ++++|++|+.||.|+|||+++++ .+..+..|...|++++|
T Consensus 319 ~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--- 393 (435)
T 1p22_A 319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--- 393 (435)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---
T ss_pred EEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---
Confidence 99999999999999999999999999 78999999999999999998766 78889999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
++.+|++++.||.|+|||+.+........ ....+.++.|.
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 433 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEP--PRSPSRTYTYI 433 (435)
T ss_dssp CSSCEEECCSSSEEEEEC------------------------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccCC--CCCCccceeee
Confidence 46789999999999999997765433322 22344444443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=290.87 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=211.0
Q ss_pred CCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCC---CEEEEEeCCCcEEEEEcC
Q 005123 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 141 ~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg---~~L~sgs~DG~I~vwdl~ 216 (713)
.+|...|++++|++ ++++|++++.||.|++||+.+++....+. +...+.+++|++.+ .+|++++.|+.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 56999999999999 77899999999999999999998887776 78889999999854 599999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCe-eEEEE---------------ccCCCceEEEEEc
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQ-EERSL---------------TGHGWDVKSVDWH 279 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~-~~~~l---------------~~h~~~V~sl~~s 279 (713)
+++.+..+..|...|++++|++++. .|++++.|+.|++||+++.. .+..+ ..|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9999889999999999999999998 58999999999999998765 33333 4688899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
+++++|++++.|+.|++||+++++....+..+ ...+........+..+++++.|+.|++||+.+++.+..+.+|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 99999999999999999999998765544322 1122222223345667777889999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecCC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~~ 427 (713)
..|++++|++ ++.+|++++.||.|++||+++......... +. ....+....+..+.. ..|+.+++|+...
T Consensus 335 ~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 335 KTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDE-TT-TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred CeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCc-eE-eccccccccceeecccCccCceeecCCcc
Confidence 9999999999 789999999999999999987764433221 11 111222222223333 3899999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=298.63 Aligned_cols=248 Identities=22% Similarity=0.419 Sum_probs=217.4
Q ss_pred EEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCC----------CceeeeeccCCCCeeEEEEecCCC-EEEEEE
Q 005123 180 MILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNM----------NNVKANKSAHKESVRDLSFCRTDL-KFCSCS 247 (713)
Q Consensus 180 ~~l~~h~~~V~sl~~spd-g~~L~sgs~DG~I~vwdl~~----------~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s 247 (713)
.....|.+.|++++|+++ +++|++++.||.|+|||+.. ......+..|...|.+++|++++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455679999999999997 67999999999999999986 566677789999999999999988 999999
Q ss_pred CCCeEEEEEcCCCee-------EEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceEEEEccCCCCeE
Q 005123 248 DDTTVKVWDFARCQE-------ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVL 316 (713)
Q Consensus 248 ~Dg~I~iwDl~~~~~-------~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~---~~~~~~~~h~~~I~ 316 (713)
.||+|++||+.+... ...+..|...|.+++|++ ++.+|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 456678999999999999 7789999999999999999987 56777888999999
Q ss_pred EEEEcCCCC-EEEEEECCCeEEEEECCC-CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC------
Q 005123 317 CVKWNQNGN-WVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------ 388 (713)
Q Consensus 317 si~fspdg~-~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~------ 388 (713)
+++|++++. +|++|+.|+.|+|||+++ ...+..+..|...|++++|++++..+|++++.|+.|+|||+....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888999999999999999666789999999999999997632
Q ss_pred -------ceEEEecccCCCeEEEEEcCCCc-EEEE--eCCcEEEEecCC
Q 005123 389 -------PQVEIHNVHDNTVWDLAWHPIGY-LLCS--NDHTTKFWCRNR 427 (713)
Q Consensus 389 -------~~~~~~~~h~~~V~~l~~spdg~-~laS--~Dg~v~iWd~~~ 427 (713)
..+....+|...|++++|++++. ++++ .|+.|+||+++.
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 45666778899999999999996 6654 899999999853
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=312.84 Aligned_cols=248 Identities=10% Similarity=0.105 Sum_probs=208.4
Q ss_pred eeCCCCCceEEEEEccC------CCEEEEEECCCcEEEEeCCCCce-----------EEEEeccCCCEEEEEEccCCCEE
Q 005123 139 SLNKNRCSINRVLWTPT------GRRLITGSQSGEFTLWNGQSFNF-----------EMILQAHDHAIRSMVWSHNDNWM 201 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spd------g~~Latgs~dg~V~Iwd~~t~~~-----------~~~l~~h~~~V~sl~~spdg~~L 201 (713)
.+..|.+.|++|+|+|+ +.+||+++.||+|+|||+.+.+. ...+.+|...|++++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35568899999999997 57999999999999999976542 2467889999999999975 589
Q ss_pred EEEeCCCcEEEEEcCCCc-eeeeeccCCCCeeEE--EEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEccCCC--ceEE
Q 005123 202 VSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDL--SFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKS 275 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~-~~~~~~~~~~~V~~l--~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~--~V~s 275 (713)
++|+.||+|++||++++. ....+..|...|++| +|++++ .+|++++.|++|+|||+++.+.+..+.+|.. .|.+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 999999999999999764 445578899999999 567887 8999999999999999998877666666653 5889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------------
Q 005123 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------------ 343 (713)
Q Consensus 276 l~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t------------ 343 (713)
|+|+|+++.|++++.|++|+|||++++.++..+.+|.+.|++|+|+|++++|++|+.|++|+|||+..
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~ 440 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSAT 440 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccc
Confidence 99999999999999999999999999998888989999999999999999999999999999998531
Q ss_pred --------------------------------CeeEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCC
Q 005123 344 --------------------------------MKELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 344 --------------------------------~~~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+..+..+.+|...|.+|+|+|+. +.+||+|+.||.|+||+++.+
T Consensus 441 ~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 441 QKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 11122344577889999999943 459999999999999998643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-31 Score=275.44 Aligned_cols=245 Identities=22% Similarity=0.390 Sum_probs=216.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.+.+|...|++++|++++++||+|+.||.|+|||+++++.+..+.+|...+.++.+ +++.|++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence 35678999999999999999999999999999999999999999999999887766 5789999999999999998876
Q ss_pred -ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee----EEEEccCCCceEEEEEcCCCCEE---EEEeC
Q 005123 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLL---VSGGK 290 (713)
Q Consensus 219 -~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~----~~~l~~h~~~V~sl~~spdg~~L---~sgs~ 290 (713)
..+..+..|...+..+.+++++++|++++.|++|++||+++++. ......+...|.++++++++..+ ++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 45566788999999999999999999999999999999987543 34556678899999999966533 45667
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
+++|++||.+......... +...+..+.|+++++.+++++ .|+.|+|||+++++.+.++.+|.+.|++++|++ ++.
T Consensus 220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~ 297 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 297 (318)
T ss_dssp TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 8999999999887766654 677899999999999888765 799999999999999999999999999999999 789
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 005123 369 YFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~ 387 (713)
+|++++.||+|+|||+.+.
T Consensus 298 ~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTEEEEECCSCC
T ss_pred EEEEEecCCeEEEEECCCC
Confidence 9999999999999998653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=292.01 Aligned_cols=281 Identities=14% Similarity=0.171 Sum_probs=220.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~ 217 (713)
.+..|.+.|+|++|++|+++|++|+.++ ++|||+.+++....... ..+..+++..+++.++ +++.|++|+|||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4578999999999999999999998775 78999988766554433 3578888988888874 677889999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-eeEEEEccCCCceEEEEEcCCCCEEEE--EeCCCcE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVS--GGKDSLV 294 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-~~~~~l~~h~~~V~sl~~spdg~~L~s--gs~Dg~I 294 (713)
++.+..+. +...|.+++|+++ .++++ .|+.|++||+.+. +.+..+.. ....+++++ .++++ ++.||.|
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred CcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 99888775 6679999999865 34444 3789999999887 55555543 344555665 56666 5789999
Q ss_pred EEEECCCCc----------------eEEEEccCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeeEEEee-c-CCC
Q 005123 295 KLWDAKSGR----------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFR-G-HRK 355 (713)
Q Consensus 295 ~IwDl~t~~----------------~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~-I~IwDl~t~~~l~~~~-~-h~~ 355 (713)
++||+++++ .+..+.+|...|++++|++++++|++++.|++ |+|||+++++.+..+. + |..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 999999865 26788999999999999999999999999998 9999999999999998 5 999
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE-EE---------------------ecccCCCeEEEEEcCCCcEE
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EI---------------------HNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~-~~---------------------~~~h~~~V~~l~~spdg~~l 413 (713)
.|++++|++ ++++|++++.|++|+|||++...... .. ...+......++|++++..+
T Consensus 242 ~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l 320 (355)
T 3vu4_A 242 DVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320 (355)
T ss_dssp CEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred cEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence 999999999 89999999999999999997543111 11 11112234679999999666
Q ss_pred EE--eCCcEEEEecCCCCCcc
Q 005123 414 CS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 414 aS--~Dg~v~iWd~~~~~~~~ 432 (713)
+. .|+.+++|++...++..
T Consensus 321 ~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 321 VVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp EEETTTTEEEEEEEEEETTTT
T ss_pred EEEeCCCeEEEEEEEcCCCCc
Confidence 54 89999999986655443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=298.78 Aligned_cols=253 Identities=21% Similarity=0.414 Sum_probs=223.2
Q ss_pred eEEEEeeCCCCCceEEEEEccC-CCEEEEEECCCcEEEEeCCC----------CceEEEEeccCCCEEEEEEccCCC-EE
Q 005123 134 KFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDN-WM 201 (713)
Q Consensus 134 ~~~~~~l~~H~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t----------~~~~~~l~~h~~~V~sl~~spdg~-~L 201 (713)
++....+..|.+.|++++|+++ +++||+++.||.|+|||+.+ .+.+..+..|...|++++|+++++ +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 4445566789999999999997 68999999999999999876 677888999999999999999988 99
Q ss_pred EEEeCCCcEEEEEcCCCce-------eeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCC---eeEEEEccCC
Q 005123 202 VSGDDGGAIKYWQNNMNNV-------KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC---QEERSLTGHG 270 (713)
Q Consensus 202 ~sgs~DG~I~vwdl~~~~~-------~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~---~~~~~l~~h~ 270 (713)
++++.||.|+|||+.++.. ...+..|...|.+++|++ ++.+|++++.|+.|++||+++. +.+..+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999999987422 345568899999999999 6789999999999999999876 5677778899
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC----
Q 005123 271 WDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRA---- 343 (713)
Q Consensus 271 ~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t-~~~~~~~~~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t---- 343 (713)
..|++|+|++++. +|++++.|+.|+|||+++ ...+..+..|...|++++|+++++ +|++++.|+.|+|||++.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999999887 789999999999999998 567888888999999999999885 689999999999999986
Q ss_pred ----------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 344 ----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 344 ----------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.+.+..+.+|...|++++|++++..+|++++.||.|+||++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3567788889999999999994444999999999999999854
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=303.80 Aligned_cols=270 Identities=17% Similarity=0.193 Sum_probs=221.9
Q ss_pred EccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCC---Cc---eeee
Q 005123 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNM---NN---VKAN 223 (713)
Q Consensus 152 ~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~---~~---~~~~ 223 (713)
|+++++.+++++ +|+ .+++.+..+ .+|.+.|++++|++ ++++|++|+.||+|+|||+.+ +. ....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 566676666554 387 456777788 88999999999999 999999999999999999876 33 2222
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCeeEEEEcc------------CCCceEEEE--EcCCCCEEE
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTG------------HGWDVKSVD--WHPTKSLLV 286 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~~~~~l~~------------h~~~V~sl~--~spdg~~L~ 286 (713)
+ .|...|++++|++++++|++++.|++|++||++ +++.+..+.. +...+.++. +++++++|+
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 2 589999999999999999999999999999994 4443333221 455677776 567899999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-cCCCCeEEEEEe
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWH 363 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~--h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-~h~~~V~sl~fs 363 (713)
+++.|+.|++||+++++.+..+.. |...|++++|++++++|++++.|+.|+|||+++++.+..+. .|...|++++|+
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 999999999999999999999987 78999999999999999999999999999999999999886 788899999777
Q ss_pred CC---CCCEEEEEECCCcEEEEEcCCCCceEEEec-------------------------ccCCCeEEEEEcCCCcEEEE
Q 005123 364 PF---HEEYFVSGSLDGSIFHWLVGHETPQVEIHN-------------------------VHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 364 p~---~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~-------------------------~h~~~V~~l~~spdg~~laS 415 (713)
+. ++.+|++++.||.|+|||+++......+.. .|...|++++|+ ++.++++
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 52 567999999999999999987764444331 166779999999 6655544
Q ss_pred --eCCcEEEEecCCCCC
Q 005123 416 --NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 --~Dg~v~iWd~~~~~~ 430 (713)
.|+.|++||+.....
T Consensus 346 ~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 346 DEATSSIVMFSLNELSS 362 (437)
T ss_dssp EGGGTEEEEEETTCGGG
T ss_pred cCCCCeEEEEECCCccc
Confidence 899999999976543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=293.42 Aligned_cols=246 Identities=15% Similarity=0.257 Sum_probs=215.6
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCC-------ceEEEEeccCCCEEEEEEccCC-CEEEEEeCCCc
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~-------~~~~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~ 209 (713)
.+.+|.+.|++++|++ ++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|++++ ++|++++.|+.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 3568999999999999 9999999999999999999987 5678899999999999999998 69999999999
Q ss_pred EEEEEcCCCceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-ccCCCc-eEEEEEcCCCCEE
Q 005123 210 IKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWD-VKSVDWHPTKSLL 285 (713)
Q Consensus 210 I~vwdl~~~~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~-V~sl~~spdg~~L 285 (713)
|+|||+++++.+..+ ..|...|.+++|++++++|++++.|+.|++||+++++.+..+ ..|... +.+++|++++++|
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 999999999998888 789999999999999999999999999999999999998888 677765 8999999999999
Q ss_pred EEE---eCCCcEEEEECCCCce-EEEE-ccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCee-EEEeec--CCCC
Q 005123 286 VSG---GKDSLVKLWDAKSGRE-LCSF-HGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKE-LESFRG--HRKD 356 (713)
Q Consensus 286 ~sg---s~Dg~I~IwDl~t~~~-~~~~-~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~-l~~~~~--h~~~ 356 (713)
+++ +.|+.|++||+++++. +... ..+...|.+++|++++++|+++ +.|+.|++||+++++. +..+.. |...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7899999999998765 3332 2467789999999999999755 4799999999998773 444443 5589
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|.+++|++ ++.++++ .++.+++|++.++
T Consensus 316 v~~~~~sp-~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMP-KRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECC-GGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEec-cccccee--cceeEEEEEcCCC
Confidence 99999999 6766654 5669999998654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=291.94 Aligned_cols=246 Identities=13% Similarity=0.153 Sum_probs=202.8
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEE-----------CCCcEEEEeCCCCceEEE----E-----eccCCCEEEEEEccC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGS-----------QSGEFTLWNGQSFNFEMI----L-----QAHDHAIRSMVWSHN 197 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs-----------~dg~V~Iwd~~t~~~~~~----l-----~~h~~~V~sl~~spd 197 (713)
..|.+|.+.|.+++++ ++.+++|+ .|+.|++|++.+.+.... . ..++..+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4577899999998775 55676664 467899998765432221 1 123456899999999
Q ss_pred CCEEEEEe--CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE--EccCCCce
Q 005123 198 DNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS--LTGHGWDV 273 (713)
Q Consensus 198 g~~L~sgs--~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~--l~~h~~~V 273 (713)
|++|++++ .|++|+|||+++++.+..+. |...|.+++|++|+++|++++.| .+++|+..+++.+.. ...|...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence 99987554 78999999999999888774 77889999999999999999855 566777666665433 34578889
Q ss_pred EEEEEcCCCCEEEEEeCCC----cEEEEECCCCce----EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 274 KSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg----~I~IwDl~t~~~----~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
.+++|+++++++++++.|+ .|++||+..... ...+.+|...|++++|+|||++||+|+.|++|+|||+++++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999887 688899877653 34567889999999999999999999999999999999999
Q ss_pred eEEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 ELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+..+ .+|...|++|+|+| ++++||++|.|++|+|||+....
T Consensus 303 ~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 99875 78999999999999 89999999999999999996543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=324.12 Aligned_cols=250 Identities=20% Similarity=0.330 Sum_probs=221.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCC--CCceEEEEeccCCCEEEEEEccC--CCEEEEEeCCCcEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--t~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~DG~I~vw 213 (713)
..+.+|.+.|++++|++++++|++|+.||.|+|||+. +.+.+..+.+|.+.|++++|+++ +++|++++.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999987 55677888999999999999988 8999999999999999
Q ss_pred EcCCCc--eeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEEEEcCCC--eeEEEEccCCCceEEEEEcC-------
Q 005123 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHP------- 280 (713)
Q Consensus 214 dl~~~~--~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~iwDl~~~--~~~~~l~~h~~~V~sl~~sp------- 280 (713)
|+.+++ ....+..|...|++++|+++ +++|++++.||+|++||+++. .....+..|...|.+++|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 66777889999999999999 999999999999999999876 34456678999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCC----ceEEEEccCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005123 281 ------TKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (713)
Q Consensus 281 ------dg~~L~sgs~Dg~I~IwDl~t~----~~~~~~~~h~~~I~si~fspd---g~~Latgs~Dg~I~IwDl~t~~-- 345 (713)
++++|++++.||.|++||++++ ..+..+.+|...|++++|+++ +++|++++.||.|+|||+++++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999887 455677889999999999999 8999999999999999999864
Q ss_pred ---eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 346 ---~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.+.....|...|++++|++ ++.+|++++.||.|+|||++...
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 3344456888999999999 78999999999999999997544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=298.87 Aligned_cols=247 Identities=17% Similarity=0.220 Sum_probs=203.7
Q ss_pred eeCCCCCceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 139 ~l~~H~~~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++.........+ ...+.+++|++++++|++|+.||.|++||+
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 4678999999999997 6899999999999999999876554444433 345789999999999999999999999998
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCC-EEEEEECCCeEEEEEcCCCeeEEE---EccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERS---LTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~-~Las~s~Dg~I~iwDl~~~~~~~~---l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
+. +.+..+..|...|++++|++++. +|++++.|++|+|||+++.+.... ..+|...|++++|++++++|++++.|
T Consensus 239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D 317 (435)
T 4e54_B 239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317 (435)
T ss_dssp SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence 75 45566788999999999999876 688999999999999987654333 35688999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCC------CeEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCeeEEEee-c
Q 005123 292 SLVKLWDAKSGRELCSFHGHKN------MVLCVKWNQNGNWVLTAS------------KDQIIKLYDIRAMKELESFR-G 352 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~------~I~si~fspdg~~Latgs------------~Dg~I~IwDl~t~~~l~~~~-~ 352 (713)
+.|+|||+++++....+..|.. .+..+.|++++.++++++ .++.|+|||+.+++.+..+. .
T Consensus 318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 9999999999988887765543 234567788777777664 23579999999999887764 6
Q ss_pred CCCCeEEE-EEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 353 HRKDVTAL-AWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 353 h~~~V~sl-~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
|...|.++ +|+| ++.+|++|+ |+.|+|||+++++
T Consensus 398 ~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 398 ESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC---
T ss_pred CCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCe
Confidence 77888887 6999 788888876 7899999997664
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=300.85 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=216.3
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+.-...|.+|+|++||+++|+++.|++|+ |.+..+. +.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 345568899999999999999999999999 7555543 37899999999999998 56666666544333
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-----ceEEEEEcCCCCEEEEEeCCCcE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-----DVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-----~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
. ..+ .+...|.+++|+++|.+||+++.||+|+|||.+. .+..+. |.. .|.+++|+|||++|++|+.||+|
T Consensus 79 ~-~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 79 L-LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp S-STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred E-eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 2 222 4578999999999999999999999999999644 555566 554 59999999999999999999999
Q ss_pred EEEECCCCce-------EEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee---EEEe-ecCCCCeEE
Q 005123 295 KLWDAKSGRE-------LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESF-RGHRKDVTA 359 (713)
Q Consensus 295 ~IwDl~t~~~-------~~~~----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~---l~~~-~~h~~~V~s 359 (713)
+|||+++++. +.++ .+|..+|.+++|+||| |++++.|++|++||+.+.+. ..++ .+|...|.+
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 9999998753 5666 5677899999999999 88899999999999987773 3556 478899999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEE--cCCCcEEEE--eCCcEEEEecC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~laS--~Dg~v~iWd~~ 426 (713)
++|+ +..||+++ +++|++||+....... ...+|.+.|++++| ++|+..+++ .||+ ++|.++
T Consensus 232 vaFs---g~~LASa~-~~tIkLWd~~~~~~~~-~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV---DYKVVLTC-PGYVHKIDLKNYSISS-LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE---TTEEEEEC-SSEEEEEETTTTEEEE-EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE---CCEEEEEe-CCeEEEEECCCCeEEE-EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9998 47888887 6999999997655433 33379999999999 999977765 6889 999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=286.58 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=213.3
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---------CCcee
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---------MNNVK 221 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---------~~~~~ 221 (713)
.+..++++|++|+.||.|+|||+.+++.+..+. ...|.++.|+++ |++++.|++|++|+.+ +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344577899999999999999999998888776 467888889887 9999999999999765 44433
Q ss_pred eee-ccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 222 ANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 222 ~~~-~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
..+ ..|...|.+++|++ ++++|++++.|++|++||+++++.+..+. .+...|.+++|++++.+|++|+.|+.|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 333 35668899999999 99999999999999999999988876664 345579999999999999999999999999
Q ss_pred ECCCCceE-EEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---CCCCeE--EEEEeCCCCCEE
Q 005123 298 DAKSGREL-CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVT--ALAWHPFHEEYF 370 (713)
Q Consensus 298 Dl~t~~~~-~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h~~~V~--sl~fsp~~~~~l 370 (713)
|+++++.+ ..+.. |...|++++|++++.+|++++. +.|+|||+++.+.+..+.. |...+. +++|++ ++.+|
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEE
Confidence 99999987 78887 9999999999999999999995 4999999999877655543 333343 699999 78999
Q ss_pred EEEEC-CCcEEEEEcCCCCceEEEecccCCCeEEEEEcC---CCcEE--EEeCCcEEEEec
Q 005123 371 VSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP---IGYLL--CSNDHTTKFWCR 425 (713)
Q Consensus 371 asgs~-DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~l--aS~Dg~v~iWd~ 425 (713)
++++. |+.|+||++++....... ..+..++|.+ +...+ ++.|+.++++-.
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred EEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99998 999999999766554443 4577788887 65444 458999998854
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=289.62 Aligned_cols=243 Identities=19% Similarity=0.388 Sum_probs=203.4
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----------eeeeeccCC------------CCeeEEEEecCC-
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----------VKANKSAHK------------ESVRDLSFCRTD- 240 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----------~~~~~~~~~------------~~V~~l~fs~dg- 240 (713)
+.+.|++++|++++++|++|+.||.|+|||+.+++ ....+.+|. ..|++++|++++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999998876 467778888 889999999998
Q ss_pred -CEEEEEECCCeEEEEEcCCCeeE---------------------------------------EE-EccCCCceEEEEEc
Q 005123 241 -LKFCSCSDDTTVKVWDFARCQEE---------------------------------------RS-LTGHGWDVKSVDWH 279 (713)
Q Consensus 241 -~~Las~s~Dg~I~iwDl~~~~~~---------------------------------------~~-l~~h~~~V~sl~~s 279 (713)
.+|++++.|++|++||+.+.... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764332 12 35799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CceEEE-------EccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCee----
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKS-GRELCS-------FHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKE---- 346 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t-~~~~~~-------~~~h~~~I~si~fspdg-~~Latgs~Dg~I~IwDl~t~~~---- 346 (713)
+++++|+++ .|+.|+|||+++ ++.+.. +..|...|++++|++++ ++|++++.|+.|+|||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999994 444442 45788999999999998 9999999999999999999886
Q ss_pred EEEeecCCC------------CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCC--------------
Q 005123 347 LESFRGHRK------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT-------------- 400 (713)
Q Consensus 347 l~~~~~h~~------------~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~-------------- 400 (713)
+..+..|.. .|++++|++ ++.+|++++. +.|+|||++.....+..+..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 899999999 8899999999 999999998744444555555431
Q ss_pred -eEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 401 -VWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 401 -V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
+..++|++++.+|++ .|+.|+|||++....
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 334999999987765 899999999976543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=274.13 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=210.9
Q ss_pred eCCCCCceEEEEEccCCC-EEEEEECCCcEEEEeC-CCCceEEEEec--cCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 140 LNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNG-QSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~-~t~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+|...|++++|+++++ +|++++.||.|++||+ .+++. ..+.. |...|.+++|++ +++|++++.|+.|++||+
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~ 129 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence 347999999999999999 9999999999999999 77654 67788 999999999999 999999999999999999
Q ss_pred CC---------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-Ce--eEEEEccCCCceEEEEEcC-CC
Q 005123 216 NM---------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQ--EERSLTGHGWDVKSVDWHP-TK 282 (713)
Q Consensus 216 ~~---------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~--~~~~l~~h~~~V~sl~~sp-dg 282 (713)
++ .+.+..+. +...|.+++|++++ |++++.|+.|++||+++ .. .......+...|.+++|++ ++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred cccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence 87 66665555 88999999999877 99999999999999987 44 3345556888999999999 99
Q ss_pred CEEEEEeCCCcEEEEECCCC------ceEEEEccCCC---------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 283 SLLVSGGKDSLVKLWDAKSG------RELCSFHGHKN---------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~------~~~~~~~~h~~---------~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
++|++++.|+.|+|||++.. +.+..+..|.. .|++++|++++++|++++.||.|+|||+++++.+
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 99999999999999999887 77788887755 9999999999999999999999999999999999
Q ss_pred EEeecC-CCCeEEEEEeCCCCCEEEEEECCCc-EEEEE
Q 005123 348 ESFRGH-RKDVTALAWHPFHEEYFVSGSLDGS-IFHWL 383 (713)
Q Consensus 348 ~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd 383 (713)
..+..| ...|++++ + ++.+|++++.||. .+.|.
T Consensus 287 ~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 287 KNFAKFNEDSVVKIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EECCCCSSSEEEEEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred hhhhcccCCCceEec--C-CCCeEEEEecCCccccccc
Confidence 999998 99999999 6 7899999999998 55555
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-30 Score=281.26 Aligned_cols=276 Identities=12% Similarity=0.046 Sum_probs=234.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE-----EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~-----~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+.+++|+++++++++++.|+.|++||+.+++... .+..|...|.+++|+++++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456799999977778888888999999999998876 344788899999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe--------C
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG--------K 290 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs--------~ 290 (713)
.+..+..+...+.+++|+++++++++++ .|+.|++||+++++.+..+.. ...+.+++|++++++|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 8888888899999999999999886555 799999999999988877765 45699999999999999988 5
Q ss_pred CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~L-atgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
|+.|++||+++++.+..+. +...+.+++|++++++| ++++.|+.|++||+++++.+..+. +...+.+++|++ ++++
T Consensus 282 dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~ 358 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKY 358 (433)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSE
T ss_pred CCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCE
Confidence 8899999999988776663 55688999999999765 556889999999999999888776 678899999999 6777
Q ss_pred EEEEEC---------------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecC
Q 005123 370 FVSGSL---------------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRN 426 (713)
Q Consensus 370 lasgs~---------------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~ 426 (713)
|++++. ||.|++||+.+.+....+ .. ...+.+++|++++.+++ + .|+.|+||+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~-~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW-EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE-EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEe-cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 777766 579999999776644333 32 56799999999997664 3 49999999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=285.23 Aligned_cols=231 Identities=14% Similarity=0.186 Sum_probs=175.6
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcee-----eeeccCCCCeeEEEEec--------CCCEEEEEECCCeEEEEEcCCCe
Q 005123 195 SHNDNWMVSGDDGGAIKYWQNNMNNVK-----ANKSAHKESVRDLSFCR--------TDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 195 spdg~~L~sgs~DG~I~vwdl~~~~~~-----~~~~~~~~~V~~l~fs~--------dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
.+++++|++++.|++|+|||+++++.. ..+.+|.+.|++++|++ |+++|++++.|++|+|||+++..
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 344568999999999999999887543 34678999999999997 78999999999999999999888
Q ss_pred eEEEEccCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEE-------------------------ccCCCCe
Q 005123 262 EERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF-------------------------HGHKNMV 315 (713)
Q Consensus 262 ~~~~l~~h~~~V~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~-------------------------~~h~~~I 315 (713)
.+..+..|...|.+++|+|++ ++|++++.|++|++||+++++..... .+|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 888888899999999999987 48999999999999999987653322 2466778
Q ss_pred EEEEEc-CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEE------------------EeC-CCCCEEEEEEC
Q 005123 316 LCVKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA------------------WHP-FHEEYFVSGSL 375 (713)
Q Consensus 316 ~si~fs-pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~------------------fsp-~~~~~lasgs~ 375 (713)
.++.|+ +|++.|++++.|++|+|||+.+++....+..|...+..+. |++ .++.++++++.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 899987 6999999999999999999998877666655554443333 332 23446778889
Q ss_pred CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 376 DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
||+|+|||+.++...... ..|...|++|+|++||.+||+ .++.+.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~-~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIP-IQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEE-EECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCEEEEEECCCCcEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 999999999887765544 467889999999999999976 77888888764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=307.63 Aligned_cols=251 Identities=21% Similarity=0.365 Sum_probs=216.6
Q ss_pred EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccCCCCeeEEEEecC--CCEEEEEECCCeEEE
Q 005123 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKV 254 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~--~~~~~~~~~~~~~~V~~l~fs~d--g~~Las~s~Dg~I~i 254 (713)
+..+.+|.+.|++++|++++++|++|+.||.|+|||+. +......+..|...|++++|+++ +++|++++.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998 45677788899999999999988 999999999999999
Q ss_pred EEcCCCe--eEEEEccCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcC------
Q 005123 255 WDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ------ 322 (713)
Q Consensus 255 wDl~~~~--~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fsp------ 322 (713)
||+.+++ .+..+..|...|.+++|+++ +++|++++.|+.|++||++++. ....+..|...|++++|++
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 67778889999999999999 9999999999999999998873 4456678999999999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----eeEEEeecCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCc
Q 005123 323 -------NGNWVLTASKDQIIKLYDIRAM----KELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 323 -------dg~~Latgs~Dg~I~IwDl~t~----~~l~~~~~h~~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
++++|++|+.||.|++||++++ ..+..+.+|...|++++|++++ +.+|++++.||.|++||+++...
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999876 5667888999999999999943 89999999999999999987632
Q ss_pred ----eEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 390 ----QVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 ----~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
.......|...|++++|++++.++++ .|+.|+||+++..+
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 22223447889999999999976654 89999999997544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=266.21 Aligned_cols=265 Identities=13% Similarity=0.080 Sum_probs=221.4
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788899999999999999988888765 58999999999987 566689999999999999888776554 999999
Q ss_pred EecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCC
Q 005123 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKN 313 (713)
Q Consensus 236 fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~ 313 (713)
|++++++|++++ .++.|++||+.+++.+..+.. ...+.+++|++++++| ++++.|+.|++||+++++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999886555 679999999999988887774 4578999999999977 67778999999999999988888754 5
Q ss_pred CeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE---CCCcEEEEEcCCCCc
Q 005123 314 MVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETP 389 (713)
Q Consensus 314 ~I~si~fspdg~~L-atgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs---~DG~I~Iwd~~~~~~ 389 (713)
.+.+++|++++++| ++++.|+.|++||+++++.+..+. +...+.+++|++ ++++|++++ .++.|++||+++...
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 67999999999988 566788999999999998887776 556789999999 677777776 789999999987654
Q ss_pred eEEEecccCCCeEEEEEcCCCcEE-EE--eCCcEEEEecCCCC
Q 005123 390 QVEIHNVHDNTVWDLAWHPIGYLL-CS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~l-aS--~Dg~v~iWd~~~~~ 429 (713)
.. .+..| ..+.+++|++++..+ ++ .|+.|++||++...
T Consensus 237 ~~-~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 237 TA-RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EE-EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EE-EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 43 33334 458999999999655 44 79999999997643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=278.90 Aligned_cols=245 Identities=16% Similarity=0.154 Sum_probs=211.7
Q ss_pred eCCCCCceEEEEEccCCCEE-EEEECCCcEEEEeCC--CCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQ--SFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~L-atgs~dg~V~Iwd~~--t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
...|.+.|++++|++++++| ++++.||.|+|||+. +++.+..+. .|...|++++|++++++|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34688899999999999996 888899999999998 888888876 5678999999999999999999999999999
Q ss_pred cCCCceee----eeccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEE
Q 005123 215 NNMNNVKA----NKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 215 l~~~~~~~----~~~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~ 286 (713)
+.+++... .+..|...|++++|+++ +++|++++.|++|++||+.+++.+.. +.+|...|.+++|+ ++++|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 98876544 66789999999999999 99999999999999999998887777 55899999999999 999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEcc-------------------------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005123 287 SGGKDSLVKLWDAKSGRELCSFHG-------------------------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYD 340 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~~~~~-------------------------h~~~I~si~fspdg~~Latgs-~Dg~I~IwD 340 (713)
+++.|+.|+|||+++++.+..+.. ....|.+++|++++++|++++ .|+.|+|||
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998887752 245799999999999999999 899999999
Q ss_pred C--CCC---eeEEEeecCCCCeEEEEEeCCCCCEEEEEEC-------CCcEEEEEcCCCC
Q 005123 341 I--RAM---KELESFRGHRKDVTALAWHPFHEEYFVSGSL-------DGSIFHWLVGHET 388 (713)
Q Consensus 341 l--~t~---~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-------DG~I~Iwd~~~~~ 388 (713)
+ .++ +.+..+..| ..|.+++|++ ++ ++++.+. +..|.||.++...
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred eccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEEEEEcCC
Confidence 9 555 677788877 8899999998 54 4444433 4558888875443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-28 Score=262.95 Aligned_cols=240 Identities=12% Similarity=0.119 Sum_probs=205.5
Q ss_pred CceEEEEEccCCCEE-EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~L-atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~ 222 (713)
..+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .|.+++|++++++|++++ .++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 358999999999987 566689999999999999988887665 999999999999886554 67999999999998877
Q ss_pred eeccCCCCeeEEEEecCCCEE-EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005123 223 NKSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAK 300 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~L-as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~ 300 (713)
.+.. ...+.+++|++++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|++++++| ++++.|+.|++||++
T Consensus 111 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 7654 4578999999999987 67778999999999999888887754 567999999999887 567788999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE-EEEEECC
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY-FVSGSLD 376 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs---~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~-lasgs~D 376 (713)
+++.+..+. +...+.+++|++++++|++++ .++.|++||+++++.+..+..+. .+.+++|++ ++++ +++++.|
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d 265 (391)
T 1l0q_A 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFX 265 (391)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTT
T ss_pred CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCC
Confidence 998887776 566799999999999999888 68999999999999988888654 589999999 5554 4777889
Q ss_pred CcEEEEEcCCCCce
Q 005123 377 GSIFHWLVGHETPQ 390 (713)
Q Consensus 377 G~I~Iwd~~~~~~~ 390 (713)
+.|++||+.++...
T Consensus 266 ~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 266 NTVSVIDTATNTIT 279 (391)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCcEE
Confidence 99999999876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=267.03 Aligned_cols=243 Identities=13% Similarity=0.174 Sum_probs=206.0
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEE--ccCCCEEEEEeCCCcEEEEEc
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW--SHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~--spdg~~L~sgs~DG~I~vwdl 215 (713)
..+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+. +..|...|++++| ++++++|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 3566799999999999999999999999999999999988665 5679999999999 889999999999999999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCE----EEEEe
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSL----LVSGG 289 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~----L~sgs 289 (713)
++++.+..+..+. .+.++.+. ...+++++.++.+++||++......... .+...+.++++..+... +++++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 9998887776554 56666665 4588999999999999998765443322 23345566666554443 99999
Q ss_pred CCCcEEEEECCCC---ceEEEEccCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 290 KDSLVKLWDAKSG---RELCSFHGHKN------------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 290 ~Dg~I~IwDl~t~---~~~~~~~~h~~------------~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
.|+.|++||++.. +.+..+..|.. .|++++|++++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC
Confidence 9999999999987 55677777765 69999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 355 ~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..|++++|++ ++.+|++++.|+..+.|++.
T Consensus 316 ~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 316 QPISACCFNH-NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp SCEEEEEECT-TSSCEEEEECCCSTTCGGGC
T ss_pred CCceEEEECC-CCCeEEEEeccccccccccc
Confidence 9999999999 78999999999866666553
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=292.81 Aligned_cols=227 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+++|...|++|+|+|+| .++.+.+|+.+... .+. .|...|.+++|+|||++||+++.||.|+|||.+.
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCCce---EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 447899999999999999 46666666644222 222 4578899999999999999999999999999654
Q ss_pred CceeeeeccCCC-----CeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-------eEEEE----ccCCCceEEEEEcCC
Q 005123 218 NNVKANKSAHKE-----SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EERSL----TGHGWDVKSVDWHPT 281 (713)
Q Consensus 218 ~~~~~~~~~~~~-----~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~-------~~~~l----~~h~~~V~sl~~spd 281 (713)
++..+. |.. .|.+++|++|+++|++|+.||+|+|||+.++. .+.++ .+|...|.+++|+|+
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 555555 554 59999999999999999999999999998875 35665 567789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---EEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCe
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRE---LCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~---~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V 357 (713)
+ |++++.|++|++||+.+++. ..++ ..|...|.+++|+ +++||+++ +++|++||+.+++......+|...|
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE
Confidence 9 88899999999999988773 3456 4788899999999 68898887 6999999999888744444799999
Q ss_pred EEEEE--eCCCCCEEEEEECCCcEEEEEcC
Q 005123 358 TALAW--HPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 358 ~sl~f--sp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..++| ++ ++..|+++++||+ ++|..+
T Consensus 269 ~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 269 HIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred EEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 99999 98 7889999999999 999874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=276.30 Aligned_cols=243 Identities=9% Similarity=0.050 Sum_probs=180.8
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEE-----EEeccCCCEEEEEEcc--------CCCEEEEEeC
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSH--------NDNWMVSGDD 206 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~-----~l~~h~~~V~sl~~sp--------dg~~L~sgs~ 206 (713)
...|...+....+++++++|++++.|++|+|||..+++... .+.+|.+.|++|+|++ |+++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666677777788899999999999999998876543 2468999999999997 7899999999
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEE--------------------
Q 005123 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERS-------------------- 265 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~-------------------- 265 (713)
|++|+|||++++.....+..|...|.+++|+|++ .+|++++.|++|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999888888888899999999999987 4799999999999999987654322
Q ss_pred -----EccCCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEE------------------EEc
Q 005123 266 -----LTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------------------KWN 321 (713)
Q Consensus 266 -----l~~h~~~V~sl~~s-pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si------------------~fs 321 (713)
..+|...|.++.|+ ++++.|++++.|++|++||+.+++....+..+...+..+ .|+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 13467788999987 699999999999999999999877666655444433333 233
Q ss_pred C--CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 322 Q--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 322 p--dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+ ++.++++|+.|++|+|||+.+++.+..+..|...|++++|+| ++++||++++|| |.+|++
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 3 344567788899999999999999888888999999999999 899999998776 555654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=260.05 Aligned_cols=248 Identities=9% Similarity=0.097 Sum_probs=190.1
Q ss_pred EEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE-EEEEC
Q 005123 170 LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSD 248 (713)
Q Consensus 170 Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L-as~s~ 248 (713)
||++.+.+.+..+..|...|++++|++|+++|++|+.++ ++|||+++.+....... ..+..+++..+++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566666667777788999999999999999999998775 78999988776554332 357888888888887 45777
Q ss_pred CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 249 DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 249 Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
|++|++||+.+++.+..+. +...|.+++|+++ .++++ .|+.|+|||+++. +.+..+.. ....+++++ .++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 8999999999999988887 6679999999865 34444 4789999999988 66665553 444556666 667
Q ss_pred EE--EECCCeEEEEECCCCe----------------eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCc-EEEEEcCCCC
Q 005123 328 LT--ASKDQIIKLYDIRAMK----------------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHET 388 (713)
Q Consensus 328 at--gs~Dg~I~IwDl~t~~----------------~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~-I~Iwd~~~~~ 388 (713)
++ |+.||.|+|||+++++ .+..+.+|...|++++|++ ++++|++++.|++ |+|||++++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Confidence 76 5789999999999865 2678899999999999999 8999999999998 9999998887
Q ss_pred ceEEEecc-cCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 389 PQVEIHNV-HDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 389 ~~~~~~~~-h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
....+..+ |...|++++|++++.++++ .|++|+|||++....
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 66666545 9999999999999987764 899999999977543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=251.07 Aligned_cols=234 Identities=12% Similarity=0.165 Sum_probs=182.5
Q ss_pred eEEEEEccCCC---EEEEEECCCcEEEEeCCCC---ceEEEEeccCC-------------------------CEEEEEEc
Q 005123 147 INRVLWTPTGR---RLITGSQSGEFTLWNGQSF---NFEMILQAHDH-------------------------AIRSMVWS 195 (713)
Q Consensus 147 V~~v~~spdg~---~Latgs~dg~V~Iwd~~t~---~~~~~l~~h~~-------------------------~V~sl~~s 195 (713)
|.++-|-..+- .+++++++ .|++|+..+. ++++++..|+. .|++|+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 45555655443 56677754 7999998887 77888777764 45667777
Q ss_pred cC----CCEEEEEeC--------------------CCcEEEEEc-CCCceeeeeccCCCCeeEEEEec---CCCEEEEEE
Q 005123 196 HN----DNWMVSGDD--------------------GGAIKYWQN-NMNNVKANKSAHKESVRDLSFCR---TDLKFCSCS 247 (713)
Q Consensus 196 pd----g~~L~sgs~--------------------DG~I~vwdl-~~~~~~~~~~~~~~~V~~l~fs~---dg~~Las~s 247 (713)
+| +.++++++. |+.|++|++ .+++.+..+..|...++.++|++ ++.+|++++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 78 667776553 888899998 44777777788888888999988 779999999
Q ss_pred CCCeEEEEEcCCCeeEEEEccCC---CceEEEEEcCCCCEE------------EEEeCCCcEEEEECCCCceEEEE----
Q 005123 248 DDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLL------------VSGGKDSLVKLWDAKSGRELCSF---- 308 (713)
Q Consensus 248 ~Dg~I~iwDl~~~~~~~~l~~h~---~~V~sl~~spdg~~L------------~sgs~Dg~I~IwDl~t~~~~~~~---- 308 (713)
.|++|+|||+++++.++++.+|. ..+.+++|+|+++++ ++|+.|++|++||.++++.+..+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 99999999999999999998654 467888999999876 56788999999999999987765
Q ss_pred -ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 309 -HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 309 -~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~-sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.+|...+.+.+++ +.++++++.|++|+|||+.+++++.++.+|...+. +++|+| ++++|++|+.|++|+|||+
T Consensus 281 p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 281 PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 3566555555554 88999999999999999999999999999987655 689999 8999999999999999996
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=260.33 Aligned_cols=232 Identities=6% Similarity=0.042 Sum_probs=189.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---------CCeeE
Q 005123 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---------RCQEE 263 (713)
Q Consensus 193 ~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---------~~~~~ 263 (713)
.+..++++|++|+.||.|++||+++++.+..+. ...|.++.|+++ +++++.|++|++|+.. +.+.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344578899999999999999999998877765 567788888877 9999999999999765 44434
Q ss_pred EEEc-cCCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 264 RSLT-GHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 264 ~~l~-~h~~~V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
..+. .|...|.+++|++ ++++|++++.|++|++||+++++.+..+. .+...|++++|++++.+|++|+.|+.|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4443 5668899999999 99999999999999999999998877664 345579999999999999999999999999
Q ss_pred ECCCCeeE-EEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe--cccCCCe--EEEEEcCCCcEE
Q 005123 340 DIRAMKEL-ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTV--WDLAWHPIGYLL 413 (713)
Q Consensus 340 Dl~t~~~l-~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V--~~l~~spdg~~l 413 (713)
|+++++.+ ..+.. |...|++++|++ ++.+|+++++ +.|+|||+++......+. ..|...+ .+++|++++.++
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 99999887 78888 999999999999 7899999995 499999998776432221 1233334 369999999888
Q ss_pred EE--e-CCcEEEEecCCCCCc
Q 005123 414 CS--N-DHTTKFWCRNRPGDT 431 (713)
Q Consensus 414 aS--~-Dg~v~iWd~~~~~~~ 431 (713)
++ . |+.|+||+++.....
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCS
T ss_pred EEecCCCCcEEEEEEcccccc
Confidence 76 6 999999999765543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-26 Score=252.72 Aligned_cols=242 Identities=9% Similarity=0.104 Sum_probs=211.6
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~ 217 (713)
.+.+|...|++++|+++++++++++.|+.|++||+.+++.+..+..|...+.+++|++++++|++++ .|+.|++||+++
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 3558999999999999999999999999999999999999999999999999999999999886554 799999999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEE--------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE-EEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCS--------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSG 288 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s--------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L-~sg 288 (713)
++.+..+.. ...+.+++|++++++|++++ .|+.|++||+.+++.+..+. +...+.+++|+++++.| +++
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEe
Confidence 988777655 45699999999999999888 58899999999988776653 55689999999999755 566
Q ss_pred eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---------------CCeEEEEECCCCeeEEEeecC
Q 005123 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---------------DQIIKLYDIRAMKELESFRGH 353 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---------------Dg~I~IwDl~t~~~l~~~~~h 353 (713)
+.|+.|++||+++++.+..+. +...+.+++|++++++|++++. ||.|++||+.+++.+..+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~- 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA- 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-
Confidence 889999999999998887776 6778999999999999998886 57999999999999888875
Q ss_pred CCCeEEEEEeCCCCCEEEEEEC-CCcEEEEEcC
Q 005123 354 RKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVG 385 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~ 385 (713)
...+.+++|++ ++++|++++. |+.|++|+++
T Consensus 400 ~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 400 GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 56799999999 6777777764 9999999985
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=251.72 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=200.4
Q ss_pred CCEEEEEECC------CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQS------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~d------g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG---~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.+ +.|++||+.. .....+..|...|.+++|+||+++|++++.++ .|++||+++++... +..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec
Confidence 5667766654 7999999975 45677888999999999999999999999875 99999999987754 556
Q ss_pred CCCCeeEEEEecCCCEEE-EEECCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECC
Q 005123 227 HKESVRDLSFCRTDLKFC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAK 300 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~La-s~s~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-Dg--~I~IwDl~ 300 (713)
+...+.+++|++|+++|+ +++.|+ .|++||+++++. ..+..+...+.+++|+||+++|++++. ++ .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 778999999999999888 566555 499999988765 566778889999999999999998886 44 68888998
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
+++. ..+..+...+.+++|++||++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~ 375 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQG 375 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEET
T ss_pred CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCC
Confidence 8764 4455567789999999999999988764 58999999988764 455454 899999999 788888877776
Q ss_pred ---cEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 378 ---SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 378 ---~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
.|++||+... ....+..|.+.|.+++|+|..
T Consensus 376 ~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 376 MGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCC
T ss_pred CccEEEEEECCCC--cEEEeeCCCCCCcCCcccccc
Confidence 7999998633 345667789999999999864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=241.17 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=158.7
Q ss_pred CCCceEEEEEccC----CCEEEEEE--------------------CCCcEEEEeC-CCCceEEEEeccCCCEEEEEEcc-
Q 005123 143 NRCSINRVLWTPT----GRRLITGS--------------------QSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSH- 196 (713)
Q Consensus 143 H~~~V~~v~~spd----g~~Latgs--------------------~dg~V~Iwd~-~t~~~~~~l~~h~~~V~sl~~sp- 196 (713)
|...|++|+|++| +.++++++ .|+.|++|++ .+++.+..+..|...++.++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 4456777777777 66666544 3888999998 55788888888999999999998
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCCceeeeeccCC---CCeeEEEEecCCCEE------------EEEECCCeEEEEEcCC
Q 005123 197 --NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK---ESVRDLSFCRTDLKF------------CSCSDDTTVKVWDFAR 259 (713)
Q Consensus 197 --dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~---~~V~~l~fs~dg~~L------------as~s~Dg~I~iwDl~~ 259 (713)
++++|++++.|++|+|||+++++.+.++..|. ..+.+++|++++.++ ++++.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 77999999999999999999999999887644 367788999999876 5678899999999999
Q ss_pred CeeEEEE-----ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeE-EEEEcCCCCEEEEEECC
Q 005123 260 CQEERSL-----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL-CVKWNQNGNWVLTASKD 333 (713)
Q Consensus 260 ~~~~~~l-----~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~-si~fspdg~~Latgs~D 333 (713)
++.+..+ .+|...+.+.+++ +.++++++.|++|+|||+++++++.++.+|...+. +++|+|||++|++|+.|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 9887665 3566556555555 78999999999999999999999999998887655 68999999999999999
Q ss_pred CeEEEEEC
Q 005123 334 QIIKLYDI 341 (713)
Q Consensus 334 g~I~IwDl 341 (713)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-25 Score=249.75 Aligned_cols=280 Identities=11% Similarity=0.101 Sum_probs=226.7
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeC--CCCceEEEEeccCCCEEEEEEcc----CCCEEEEEeC-CCcEEEEEcCCCc
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSH----NDNWMVSGDD-GGAIKYWQNNMNN 219 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~--~t~~~~~~l~~h~~~V~sl~~sp----dg~~L~sgs~-DG~I~vwdl~~~~ 219 (713)
+.+++|++||++|++++.|+.|++||+ .+++.+.++. +...+..++|++ |+++|++++. +++|.|||..+.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 899999999999999999999999999 8888888887 456789999999 9999998884 8999999999998
Q ss_pred eeeeeccC-----------CCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEE--EEccCCCceEEEEEcCCCCEE
Q 005123 220 VKANKSAH-----------KESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 220 ~~~~~~~~-----------~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~--~l~~h~~~V~sl~~spdg~~L 285 (713)
.+..+..+ ...+.++.+++++.. +++...+++|.+||+.+.+.+. .+. +...+.++.|++++++|
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence 88776542 237889999997765 5566678999999998765433 333 56678899999999987
Q ss_pred EEEe-CCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCC-CCEEEEEE-CCCeEEEEECCC-------CeeEEEee
Q 005123 286 VSGG-KDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQN-GNWVLTAS-KDQIIKLYDIRA-------MKELESFR 351 (713)
Q Consensus 286 ~sgs-~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspd-g~~Latgs-~Dg~I~IwDl~t-------~~~l~~~~ 351 (713)
++++ .+++|.+||+++++++..+.. |......+ ++++ +.+++++. .|++|.|||+.+ ++++.++.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 7655 588999999999998888764 44434333 4676 55566665 589999999998 89999999
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEE-------CCCcEEEEEcCCCCceEEEe--------cccCCCeEEEEEcCCCcEEE-E
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGS-------LDGSIFHWLVGHETPQVEIH--------NVHDNTVWDLAWHPIGYLLC-S 415 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs-------~DG~I~Iwd~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~la-S 415 (713)
.|...+..++|+| ++++|++++ .+++|.|||+.+.+...+.+ ..+...+..++|+++|..+. +
T Consensus 418 ~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 418 GQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred cCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 9999999999999 788888877 26799999999887663443 34567899999999996664 2
Q ss_pred ------eCCcEEEEecCCCCC
Q 005123 416 ------NDHTTKFWCRNRPGD 430 (713)
Q Consensus 416 ------~Dg~v~iWd~~~~~~ 430 (713)
.|+.|.|||....+.
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EECCTTSCCEEEEEETTTTEE
T ss_pred eecCCCCCCeEEEEECCCceE
Confidence 279999999865543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=265.18 Aligned_cols=282 Identities=9% Similarity=0.051 Sum_probs=225.6
Q ss_pred CCceEEEEEccCCCEEEEEEC-CC-----cEEEEeCCCCceEEEEeccCCC------------------------EEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-SG-----EFTLWNGQSFNFEMILQAHDHA------------------------IRSMV 193 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-dg-----~V~Iwd~~t~~~~~~l~~h~~~------------------------V~sl~ 193 (713)
...|++++||+||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 8999999999887777655433 78999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC
Q 005123 194 WSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (713)
Q Consensus 194 ~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~ 271 (713)
|++||++|++++. +.|++||+.++. ....+..+...+.+++|++||++|++++. +.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 999999999883 33445667788999999999999999884 5999999998876654443333
Q ss_pred c----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q 005123 272 D----------------VKSVDWHPTKSLLVSGGKDS---------------------------------LVKLWDAKS- 301 (713)
Q Consensus 272 ~----------------V~sl~~spdg~~L~sgs~Dg---------------------------------~I~IwDl~t- 301 (713)
. +.+++|+||+++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999988765 789999998
Q ss_pred CceEEEEc--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeeEEEeecCCC----CeEEEEEeCCCCCEE
Q 005123 302 GRELCSFH--GHKNMVLCVKWNQNGNWVLTASK-----DQIIKLYDIRAMKELESFRGHRK----DVTALAWHPFHEEYF 370 (713)
Q Consensus 302 ~~~~~~~~--~h~~~I~si~fspdg~~Latgs~-----Dg~I~IwDl~t~~~l~~~~~h~~----~V~sl~fsp~~~~~l 370 (713)
++...... .+...+.+++| +||++|++++. +..|++||+.+++....+..+.. .+.+++|++ +++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~ 351 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-DGSIL 351 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-TSCEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-CCeEE
Confidence 77655433 36778999999 99999997764 56899999999988777765543 456899999 66799
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCcEEE--E-eCC--cEEEEecCCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLC--S-NDH--TTKFWCRNRPGD 430 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~la--S-~Dg--~v~iWd~~~~~~ 430 (713)
++++.||.+.||.++.... ...+..+...|.++ .|++++..++ + .|+ .++||+++..+.
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 9999999888888764444 56666677888887 5999996543 3 444 899999976544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=247.62 Aligned_cols=274 Identities=9% Similarity=0.050 Sum_probs=214.9
Q ss_pred CceEEEEEccCCC-EEEEEE----CCC----cEEEEeC--CCCceE--EEEeccCCCEEEEEEcc--------------C
Q 005123 145 CSINRVLWTPTGR-RLITGS----QSG----EFTLWNG--QSFNFE--MILQAHDHAIRSMVWSH--------------N 197 (713)
Q Consensus 145 ~~V~~v~~spdg~-~Latgs----~dg----~V~Iwd~--~t~~~~--~~l~~h~~~V~sl~~sp--------------d 197 (713)
..|...+|+..+. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..++++. .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4678888988874 565776 467 8999999 888876 45888888888877764 1
Q ss_pred CCEEEEEeCC------CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC---eEEEEEcCCCeeEEEEcc
Q 005123 198 DNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLTG 268 (713)
Q Consensus 198 g~~L~sgs~D------G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg---~I~iwDl~~~~~~~~l~~ 268 (713)
+..|+.++.+ +.|++||++... ...+..|...|.+++|++|+++|++++.++ .|++||+++++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5566655544 799999998544 456667889999999999999999999885 9999999988765 4566
Q ss_pred CCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECC
Q 005123 269 HGWDVKSVDWHPTKSLLV-SGGKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIR 342 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~-sgs~Dg~--I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D-g--~I~IwDl~ 342 (713)
+...+.+++|+||+++|+ +++.|+. |++||+++++. ..+..+...+.+++|++||++|++++.+ + .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 788999999999999888 5665554 99999998765 5666788899999999999999988864 4 68888998
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eC
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--ND 417 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~D 417 (713)
+++. ..+..+...+.+++|++ ++++|++++.+ ..|++||+.++.. ..+..+. .+.+++|++|+.+|+. .|
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred CCCE-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence 8764 44555777899999999 67777777654 5899999977653 3344443 8999999999976643 44
Q ss_pred C---cEEEEecC
Q 005123 418 H---TTKFWCRN 426 (713)
Q Consensus 418 g---~v~iWd~~ 426 (713)
+ .|++|+++
T Consensus 375 ~~~~~l~~~d~~ 386 (415)
T 2hqs_A 375 GMGSVLNLVSTD 386 (415)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 4 68888775
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=248.11 Aligned_cols=277 Identities=12% Similarity=0.058 Sum_probs=227.3
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--CCCceeeeeccCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN--NMNNVKANKSAHK 228 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl--~~~~~~~~~~~~~ 228 (713)
+|++++.++++++.|++|.+||..+++++.++..+.. +.+++|++|+++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889998999999999999999999999999885444 899999999999999999999999999 7888777776 45
Q ss_pred CCeeEEEEec----CCCEEEEEEC-CCeEEEEEcCCCeeEEEEccC-----------CCceEEEEEcCCCC-EEEEEeCC
Q 005123 229 ESVRDLSFCR----TDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKS-LLVSGGKD 291 (713)
Q Consensus 229 ~~V~~l~fs~----dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h-----------~~~V~sl~~spdg~-~L~sgs~D 291 (713)
..+..++|++ |+++|++++. +++|.|||..+.+.+..+..+ ...+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6789999999 9999998884 899999999999888877642 23789999999766 45666778
Q ss_pred CcEEEEECCCCceEE--EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec----CCCCeEEEEEeC
Q 005123 292 SLVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG----HRKDVTALAWHP 364 (713)
Q Consensus 292 g~I~IwDl~t~~~~~--~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl~fsp 364 (713)
+.|.+||+.+.+.+. .+. +...+.++.|+++|++|++++ .+++|.+||+++++++..+.. |......+ +++
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 999999998876544 343 566788999999999887665 588999999999999888874 55444443 467
Q ss_pred CCCCEEEEEE-CCCcEEEEEcCCC------CceEEEecccCCCeEEEEEcCCCcEEEE-e--------CCcEEEEecCCC
Q 005123 365 FHEEYFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCS-N--------DHTTKFWCRNRP 428 (713)
Q Consensus 365 ~~~~~lasgs-~DG~I~Iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~laS-~--------Dg~v~iWd~~~~ 428 (713)
+++.+++++. .|++|.|||+.+. .+.+..+..|...+..|+++|++..|.+ . +++|.|||++..
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 4577777776 6899999999772 4566777778888999999999988876 3 679999999876
Q ss_pred CCc
Q 005123 429 GDT 431 (713)
Q Consensus 429 ~~~ 431 (713)
+..
T Consensus 460 ~~~ 462 (543)
T 1nir_A 460 DAK 462 (543)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=255.99 Aligned_cols=277 Identities=11% Similarity=0.105 Sum_probs=210.5
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-----C
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-----N 218 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-----~ 218 (713)
...|.+++|++| ++|+++. ++.|++||+.+++.. .+..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 357999999999 6666664 599999999987654 445567788999999999999985 579999999998 7
Q ss_pred ceeeeeccCCCC--------------eeEEEEecCCCEEEEEE---------------------------------CCCe
Q 005123 219 NVKANKSAHKES--------------VRDLSFCRTDLKFCSCS---------------------------------DDTT 251 (713)
Q Consensus 219 ~~~~~~~~~~~~--------------V~~l~fs~dg~~Las~s---------------------------------~Dg~ 251 (713)
+.......+... +.+++|++|+++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 665544443333 48999999999999987 4468
Q ss_pred EEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEc--cCCC---CeEEEE
Q 005123 252 VKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFH--GHKN---MVLCVK 319 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg-----~I~IwDl~t~~~~~~~~--~h~~---~I~si~ 319 (713)
|++||+.+++...... .+...+.+++|++|+++|++++.|+ .|++||+.+++....+. .+.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887654432 4567799999999999999988775 89999999984443332 1222 246789
Q ss_pred EcC--CCCEEEEEECCCeEEEEECC-CCeeEEEeecCCCCeEE-EEEeCCCCCEE-EEEECCC----cEEEEEcCCCCce
Q 005123 320 WNQ--NGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTA-LAWHPFHEEYF-VSGSLDG----SIFHWLVGHETPQ 390 (713)
Q Consensus 320 fsp--dg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~~V~s-l~fsp~~~~~l-asgs~DG----~I~Iwd~~~~~~~ 390 (713)
|++ ||++|++++.|+.++||+++ +++.+..+..+...+.+ ++|++ +++.| ++++.++ .|+.||+.++.
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-- 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-- 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC--
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC--
Confidence 999 99999999999999999886 67777888878878877 79999 55554 5555555 56666765543
Q ss_pred EEEecccCCCeEEEEEcCCCcEEEE--eC----CcEEEEecCCC
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLCS--ND----HTTKFWCRNRP 428 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~laS--~D----g~v~iWd~~~~ 428 (713)
...+. +...+.+++|++|+.+++. .+ +.|++||++..
T Consensus 394 ~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 394 TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 23332 5677999999999976643 22 56999998654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=222.78 Aligned_cols=264 Identities=10% Similarity=0.068 Sum_probs=215.0
Q ss_pred CCceEEEEEccCCCEEEEEEC-------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEc
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQN 215 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl 215 (713)
...+..++|++++++|++++. ++.|.+||..+++.+..+.. ...+.+++|++++++++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 356889999999999998874 56899999999998888765 3457889999999966655 55799999999
Q ss_pred CCCceeeeeccCCCC---------eeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCE
Q 005123 216 NMNNVKANKSAHKES---------VRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~---------V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
.+++.+..+..+... +.+++|+++++++++++ .++.|.+||+++++.+..+..+...+.+++|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 999887776554322 78899999999888776 4789999999999988888766667899999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~~----h~~~I~si~fspdg~~Latgs~D-g~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
|++++.++.|.+||+.+++.+..+.. +...+.+++|++++++|++++.+ +.|.+||+.+++.+..+.... ...
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cce
Confidence 99999999999999999988877754 45568899999999988877654 899999999999888777544 257
Q ss_pred EEEeCCCCC-EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE
Q 005123 360 LAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 360 l~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 413 (713)
++|++ +++ ++++...++.|.+||+.+.+....+. ....+.+++|++++.++
T Consensus 277 ~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 277 VLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLALSADGKTL 328 (353)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEEECTTSCEE
T ss_pred EEECC-CCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEE
Confidence 99999 555 55555579999999997766444333 24578999999999744
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=256.74 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=214.0
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+++...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 45889999999999999986 899999999873 44556778889999999999999998874 689999999887665
Q ss_pred eeccCCCC----------------eeEEEEecCCCEEEEEECCC---------------------------------eEE
Q 005123 223 NKSAHKES----------------VRDLSFCRTDLKFCSCSDDT---------------------------------TVK 253 (713)
Q Consensus 223 ~~~~~~~~----------------V~~l~fs~dg~~Las~s~Dg---------------------------------~I~ 253 (713)
....+... +.+++|++|+++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 54443332 47899999999999987765 889
Q ss_pred EEEcCC-CeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEccCCC----CeEEEEEc
Q 005123 254 VWDFAR-CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGRELCSFHGHKN----MVLCVKWN 321 (713)
Q Consensus 254 iwDl~~-~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~-----Dg~I~IwDl~t~~~~~~~~~h~~----~I~si~fs 321 (713)
+||+.+ ++...... .+...+.+++| +|+++|++++. +..|++||+.+++....+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 76554433 36778999999 99999987764 56799999999987776654443 45689999
Q ss_pred CCCCEEEEEECCCeEEEEECC-CCeeEEEeecCCCCeEEE-EEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEeccc
Q 005123 322 QNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 322 pdg~~Latgs~Dg~I~IwDl~-t~~~l~~~~~h~~~V~sl-~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h 397 (713)
+||++|++++.|+.++||.++ +++ +..+..+...|..+ .|++++..++++++.++ .++||+++........+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 999988899999987887765 345 77787788888887 59994334445666666 8999998654433344433
Q ss_pred CCCeEEEEEcCCCcEEEE---eC---CcEEEEecC
Q 005123 398 DNTVWDLAWHPIGYLLCS---ND---HTTKFWCRN 426 (713)
Q Consensus 398 ~~~V~~l~~spdg~~laS---~D---g~v~iWd~~ 426 (713)
...+.+++|++|+..++. .. ..+.+|+.+
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 667899999999976653 22 457777653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=222.84 Aligned_cols=275 Identities=8% Similarity=0.085 Sum_probs=204.3
Q ss_pred EEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCce-eeeecc
Q 005123 150 VLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNV-KANKSA 226 (713)
Q Consensus 150 v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~~~~-~~~~~~ 226 (713)
..|..++++ +++++.++.|++||..+++.+..+..+...+ +++|++++++|++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345666655 5677788999999999999988888777777 9999999997776665 88999999999887 666666
Q ss_pred CCCCeeEEEEecCCCEEEEEECCC---eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCc-EEEEECCC
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL-VKLWDAKS 301 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg---~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~-I~IwDl~t 301 (713)
+...+.+++|++++++|+++..++ .|++||+.+++.+..+.. .....+++|++++++|+++ ..++. |.+||++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 655555599999999999655553 899999999988877764 4567999999999855554 55588 99999986
Q ss_pred CceEE----EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee---EEEeecCCCCeEEEEEeCCCCCEEE-E
Q 005123 302 GRELC----SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYFV-S 372 (713)
Q Consensus 302 ~~~~~----~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~---l~~~~~h~~~V~sl~fsp~~~~~la-s 372 (713)
...+. ..........+++|+++|++|++++ .++.|++||+++++. +..+.. ...+..++|++ ++++|+ +
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEE
Confidence 44331 2223455689999999999776655 688999999998887 777764 46678999999 666554 4
Q ss_pred EECCCcEEEEEcCCCCce--EEEecc---cC---CCeEEEEEcCCCcEE-E-E-eCCcEEEEecCCC
Q 005123 373 GSLDGSIFHWLVGHETPQ--VEIHNV---HD---NTVWDLAWHPIGYLL-C-S-NDHTTKFWCRNRP 428 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~--~~~~~~---h~---~~V~~l~~spdg~~l-a-S-~Dg~v~iWd~~~~ 428 (713)
...++.|.+||+.+++.. ..+... +. ..+.+++|++|+..+ + + .++.|+||+++..
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 455788999999776531 111111 11 123568999999755 3 3 5679999998654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=220.88 Aligned_cols=268 Identities=10% Similarity=0.087 Sum_probs=191.5
Q ss_pred EEE-EEECCCcEEEEeCC-CCce-EEEEeccCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcC--CCce--eeeeccCCC
Q 005123 158 RLI-TGSQSGEFTLWNGQ-SFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNN--MNNV--KANKSAHKE 229 (713)
Q Consensus 158 ~La-tgs~dg~V~Iwd~~-t~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~D-G~I~vwdl~--~~~~--~~~~~~~~~ 229 (713)
+|+ +++.|+.|++||+. +++. ......+...+.+++|++++++|++++.+ +.|++|+++ +++. +..+... .
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence 444 44679999999985 3322 22223467789999999999999988876 999999998 5543 3333333 3
Q ss_pred CeeEEEEecCCCEEEEEEC-CCeEEEEEcC---CCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cc
Q 005123 230 SVRDLSFCRTDLKFCSCSD-DTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GR 303 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~---~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t-~~ 303 (713)
.+.+++|++++++|++++. ++.|++||+. ..+.+..+. ....+.+++|++++++|++++ .++.|++||+++ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 8899999999998877765 8899999994 333444444 344689999999999888887 889999999987 54
Q ss_pred eEE----EEcc-CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC--Cee--EEEee---cC---CCCeEEEEEeCCCC
Q 005123 304 ELC----SFHG-HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA--MKE--LESFR---GH---RKDVTALAWHPFHE 367 (713)
Q Consensus 304 ~~~----~~~~-h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t--~~~--l~~~~---~h---~~~V~sl~fsp~~~ 367 (713)
... .+.. ....+.+++|++++++|++++ .++.|++||++. ++. +..+. .. ...+..++|++ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DG 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CC
Confidence 432 2222 345788999999999877665 789999999953 332 22222 11 23577899999 55
Q ss_pred CEEE-EEECCCcEEEEEcCCCC---ceEEEecccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 368 EYFV-SGSLDGSIFHWLVGHET---PQVEIHNVHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 368 ~~la-sgs~DG~I~Iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
++|+ ++..++.|++||++... ..+.....+. .+.+++|++++.+++ + .|+.|.||+++...
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 5555 56679999999997322 2222233333 489999999997553 3 57999999886544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=256.53 Aligned_cols=283 Identities=11% Similarity=0.110 Sum_probs=210.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC---CEEEEEEccCCCEEEEEeCC---------CcEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDDG---------GAIKYW 213 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V~sl~~spdg~~L~sgs~D---------G~I~vw 213 (713)
.+.+++|++||+++++ +.||.|++||..+++....+..|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999988888877765 49999999999999998764 788899
Q ss_pred EcCCCceeee--eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc------------------e
Q 005123 214 QNNMNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD------------------V 273 (713)
Q Consensus 214 dl~~~~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~------------------V 273 (713)
|+++++.... ...+...+..++|++||++|+.++. +.|++||+.+++.......+... +
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9998876222 2234445899999999999999886 79999999988776665543333 3
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceEEEEccC------CC
Q 005123 274 KSVDWHPTKSLLVSGGKDS----------------------------------LVKLWDAKSGRELCSFHGH------KN 313 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~~~~~~~h------~~ 313 (713)
.+++|+||+++|++++.|+ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999987653 7999999988865666543 56
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeeEEEeec-CCCCe----EEEEEeCCCCCEEEE-EECCC------
Q 005123 314 MVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKELESFRG-HRKDV----TALAWHPFHEEYFVS-GSLDG------ 377 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~----Dg~I~IwDl~t~~~l~~~~~-h~~~V----~sl~fsp~~~~~las-gs~DG------ 377 (713)
.+.+++||+||++|++.+. +..|++||+.+++....+.. +...+ ..++|+|++..++++ +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 7899999999998877653 35799999999887766543 33433 378999954444444 56677
Q ss_pred cEEEEEcCCCCc--eEEEecccCCCeEE-EEEcCCCcEEE--E-eC--CcEEEEecCCCCC
Q 005123 378 SIFHWLVGHETP--QVEIHNVHDNTVWD-LAWHPIGYLLC--S-ND--HTTKFWCRNRPGD 430 (713)
Q Consensus 378 ~I~Iwd~~~~~~--~~~~~~~h~~~V~~-l~~spdg~~la--S-~D--g~v~iWd~~~~~~ 430 (713)
.|++||+..... ....+..+...+.. ++|++|+..|+ + .| +.++||+++..+.
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 466676323332 02223223344554 69999997764 3 33 7899999986543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=250.26 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=196.9
Q ss_pred ceEEEEEccCCCEEEEEECC---------CcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~d---------g~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
.|.+++|||||++|++++.+ +.|+|||+.+++. ..+. .|...+.+++|||||++|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48999999999999999874 7788999998876 3343 34445889999999999999886 799999
Q ss_pred EcCCCceeeeeccCCCCe------------------eEEEEecCCCEEEEEECCC-------------------------
Q 005123 214 QNNMNNVKANKSAHKESV------------------RDLSFCRTDLKFCSCSDDT------------------------- 250 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V------------------~~l~fs~dg~~Las~s~Dg------------------------- 250 (713)
|+.+++.......+...+ .+++|++|+++|++++.|+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999887766555444333 7899999999999887553
Q ss_pred ---------eEEEEEcCCCeeEEEEccC------CCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceEEEEcc-
Q 005123 251 ---------TVKVWDFARCQEERSLTGH------GWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHG- 310 (713)
Q Consensus 251 ---------~I~iwDl~~~~~~~~l~~h------~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~~~~~~~~- 310 (713)
+|++||+.+++....+..+ ...+.+++|+||+++|++.+. +..|++||+.+++....+..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 7999999888765566543 567899999999998877653 35799999999887766543
Q ss_pred CCCCe----EEEEEcCCCCEEEE--EECCC------eEEEEE-CCCCe--eEEEeecCCCCeEE-EEEeCCCCCEEEEEE
Q 005123 311 HKNMV----LCVKWNQNGNWVLT--ASKDQ------IIKLYD-IRAMK--ELESFRGHRKDVTA-LAWHPFHEEYFVSGS 374 (713)
Q Consensus 311 h~~~I----~si~fspdg~~Lat--gs~Dg------~I~IwD-l~t~~--~l~~~~~h~~~V~s-l~fsp~~~~~lasgs 374 (713)
+...+ ..++|++||++|++ +..++ .|++|| ..+++ ++..+..+...+.. ++|++ +++.|+..+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~ 378 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLS 378 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEE
Confidence 33444 37899999997775 44666 577777 34444 14445444444554 69999 666666555
Q ss_pred CC---CcEEEEEcCCCCc-eEEEecc---cCCCeEEEEEcCCCcEEEE
Q 005123 375 LD---GSIFHWLVGHETP-QVEIHNV---HDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 375 ~D---G~I~Iwd~~~~~~-~~~~~~~---h~~~V~~l~~spdg~~laS 415 (713)
.+ +.++||+++.... ....+.. |...+..++|++|+..++.
T Consensus 379 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 44 7899999865432 2222322 5677899999999977653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=216.64 Aligned_cols=249 Identities=10% Similarity=0.114 Sum_probs=194.3
Q ss_pred EECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeccC-CCCeeEEEEecC
Q 005123 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAH-KESVRDLSFCRT 239 (713)
Q Consensus 162 gs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~-~~~~~~~~~~-~~~V~~l~fs~d 239 (713)
++.|+.|++||+.+++.. .+..|...|.+++|++++++|++++ ++.|++||+++ ++.......+ ...|.+++|+++
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 456889999999988766 4556899999999999999999987 78999999999 7776665555 367899999999
Q ss_pred CCEEEEEEC--CCeEEE--EEcCCCeeEEEEccCCCceEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CceEEEEccCCC
Q 005123 240 DLKFCSCSD--DTTVKV--WDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSLVKLWDAKS-GRELCSFHGHKN 313 (713)
Q Consensus 240 g~~Las~s~--Dg~I~i--wDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~Dg~I~IwDl~t-~~~~~~~~~h~~ 313 (713)
+++|++++. ++.++| ||+.+++ ...+..+ ..+.+++|++++++|+ +++.|+.++||+++. ......+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 999999983 344455 4555544 3444433 3589999999999877 677899999998632 334456666788
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC-----------CcEE
Q 005123 314 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-----------GSIF 380 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs-~Dg~I~IwDl~-t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-----------G~I~ 380 (713)
.+.+++|++++++|++++ .++.++||+++ .+..+..+..|...+.+++|++ ++++|++++.+ +.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence 899999999999888776 58899999986 5666777877888899999999 77887777765 5699
Q ss_pred EEEcCCCCce-EEEecccCCCeEEEEEcCCCcEEEE
Q 005123 381 HWLVGHETPQ-VEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 381 Iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+||+.++... +.....|...|.+++|++++..|+.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence 9999776543 2223367788999999999976643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=215.31 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=182.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEecc-CCCEEEEEEccCCCEEEEEe--CCCcEEEEE--c
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAH-DHAIRSMVWSHNDNWMVSGD--DGGAIKYWQ--N 215 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs--~DG~I~vwd--l 215 (713)
.|...|.+++|++|+++|++++ ++.|++||+.+ ++....+..+ ...|.+++|++++++|++++ .++.+.||. +
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 4678899999999999999987 78999999999 8777666665 36789999999999999998 334555555 4
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCC-CeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCC
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDS 292 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg 292 (713)
.++.. ..+. ....+..++|++++++|+ +++.|+.++||+++. ......+..+...+.+++|++++++|++++ .++
T Consensus 118 ~~~~~-~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 118 TGGTP-RLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp TCCCC-EECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCce-EEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 45443 2333 333589999999999877 777899999998632 234456666778899999999999888776 589
Q ss_pred cEEEEECC-CCceEEEEccCCCCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCee--EEEeecCCCCeE
Q 005123 293 LVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-----------QIIKLYDIRAMKE--LESFRGHRKDVT 358 (713)
Q Consensus 293 ~I~IwDl~-t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D-----------g~I~IwDl~t~~~--l~~~~~h~~~V~ 358 (713)
.++||+++ .+..+..+..+...+.+++|++++++|++++.+ +.|++||+.+++. +..+..|...|.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 99999886 566677777778889999999999999988765 5699999998765 444557888999
Q ss_pred EEEEeCCCCCEEEEEECC
Q 005123 359 ALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~D 376 (713)
+++|++ ++++|++++.|
T Consensus 276 ~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 276 SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp SCCBCT-TSSEEEEEEEC
T ss_pred cceECC-CCCEEEEEEec
Confidence 999999 67777666654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=212.76 Aligned_cols=266 Identities=6% Similarity=0.002 Sum_probs=205.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCC--CEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccC-----C
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH--AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH-----K 228 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~--~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~-----~ 228 (713)
++|++++.++.|++||..+++.+..+..... .+.+++|++++++|+ ++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887764332 588999999998765 4556789999999998877655432 2
Q ss_pred CCeeEEEEecCCCEEEEEE------------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 229 ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s------------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+.+++|++++++|++++ .++.|++||+.+++.+..+.. ...+.+++|++++++|+++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2678899999999998886 579999999999888777764 5568899999999988887 688999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC------------------------eEEEEECCCCeeE-EEee
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------------------------IIKLYDIRAMKEL-ESFR 351 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg------------------------~I~IwDl~t~~~l-~~~~ 351 (713)
||+++++.+..+..... ...+.|++++++|++.+.++ .|.+||+++++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 99999988877764431 11337889888776544332 4789999988764 3344
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-E-eCCcEEEEecCCCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC-S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S-~Dg~v~iWd~~~~~ 429 (713)
.+...+.+++|++ ++++|+++ ++.|++||+.+.+....+. ....+.+++|++++.+++ + .|+.|++||++...
T Consensus 238 ~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 5667789999999 67777777 7899999997765443333 235688999999997553 3 88999999987654
Q ss_pred Cc
Q 005123 430 DT 431 (713)
Q Consensus 430 ~~ 431 (713)
..
T Consensus 313 ~~ 314 (337)
T 1pby_B 313 KK 314 (337)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=213.87 Aligned_cols=263 Identities=9% Similarity=0.108 Sum_probs=189.2
Q ss_pred CCCceEEEEEccCCCEEEEEECC-CcEEEEeCC--CCce--EEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQ--SFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNN 216 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~d-g~V~Iwd~~--t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~ 216 (713)
|...+.+++|++++++|++++.+ +.|++|++. +++. +..+..+. .+.+++|++++++|++++. ++.|.+||++
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 56678899999999999999887 999999987 5543 34444433 8899999999998877765 7899999994
Q ss_pred ---CCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCC-CeeEE----EEcc-CCCceEEEEEcCCCCEEE
Q 005123 217 ---MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-CQEER----SLTG-HGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 217 ---~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~-~~~~~----~l~~-h~~~V~sl~~spdg~~L~ 286 (713)
..+....+. ....+.+++|++++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|++++++|+
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 115 DGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp TTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 333444433 345689999999999888887 899999999987 54432 2222 345788999999999776
Q ss_pred EEe-CCCcEEEEECCC--Cce--EEEEcc------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC----CCeeEEEe
Q 005123 287 SGG-KDSLVKLWDAKS--GRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR----AMKELESF 350 (713)
Q Consensus 287 sgs-~Dg~I~IwDl~t--~~~--~~~~~~------h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~----t~~~l~~~ 350 (713)
+++ .++.|.+||++. ++. +..+.. ....+.+++|++++++|+++. .++.|++||++ +.+.+..+
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 655 789999999953 432 222221 123577899999999888555 78999999998 34555556
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCce---EEEecccCCCeEEEEEcCCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg 410 (713)
..+.. +.+++|++ ++++|++++ .++.|.+|+++..... +..+.. .....+++|.++.
T Consensus 274 ~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 274 PTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp ECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred cCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 55544 89999999 677676666 6899999976533221 111211 2446667776654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=240.15 Aligned_cols=270 Identities=11% Similarity=0.023 Sum_probs=202.0
Q ss_pred CCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeC---CCcEEEEEcCC-
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNM- 217 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~- 217 (713)
...|++++|++||++||+++. ||+++||++.+++. ..+..+. ..|.+++|++| +++++++. +....||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 346999999999999999887 99999999866554 4555555 68999999999 77777775 45566665543
Q ss_pred -CceeeeeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC----
Q 005123 218 -NNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (713)
Q Consensus 218 -~~~~~~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---- 291 (713)
......+.. ...+...+|++|++. +++++.++.+.+||+.+++.......+. .+++|+|||++|++++.|
T Consensus 99 ~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 221123322 223456788888854 3444445556699999887665554333 899999999999988877
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeeEEEeecCCCCeEEEE--------
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRAMKELESFRGHRKDVTALA-------- 361 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg--~I~IwDl~t~~~l~~~~~h~~~V~sl~-------- 361 (713)
..|++||+.+++.. .+..+...+.+++|||||++|+++..++ .|++||+.+++.. .+..|...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 78999999988755 5677888899999999999999888888 8999999998877 7777877777777
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC-cEEEEecCCCC
Q 005123 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH-TTKFWCRNRPG 429 (713)
Q Consensus 362 fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg-~v~iWd~~~~~ 429 (713)
|++ ++.++++++.|++++||++ ++ ... ...+.|.+++|+ ++.++++ .+. .-++|.++..+
T Consensus 253 ~sp-dg~~~~~~~~~g~~~l~~~--g~-~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 253 YLP-DGRLAVVARREGRSAVFID--GE-RVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ECT-TSCEEEEEEETTEEEEEET--TE-EEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EcC-CCcEEEEEEcCCcEEEEEE--CC-eec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999 5599999999999999999 32 221 345678999999 8876654 443 34555554433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=206.15 Aligned_cols=241 Identities=8% Similarity=0.075 Sum_probs=183.1
Q ss_pred CCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCce-EEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNM 217 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG---~I~vwdl~~ 217 (713)
+...+ +++|++|+++|++++. ++.|++||..+++. ...+..+...+.+++|++++++|+++..++ .|.+||+++
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 34456 9999999998877766 88999999999887 777777766666699999999999655553 899999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEE-ECCCe-EEEEEcCCCeeE----EEEccCCCceEEEEEcCCCCEEEEEe-C
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTT-VKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGG-K 290 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~-I~iwDl~~~~~~----~~l~~h~~~V~sl~~spdg~~L~sgs-~ 290 (713)
++.+..+.. .....+++|++++++|+++ ..++. |++|++.....+ .........+.+++|++++++|++++ .
T Consensus 118 ~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 118 NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence 988776644 4567999999999865555 55578 999998754332 12223456689999999999665554 6
Q ss_pred CCcEEEEECCCCce---EEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee--EEEeecC----CC---Ce
Q 005123 291 DSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LESFRGH----RK---DV 357 (713)
Q Consensus 291 Dg~I~IwDl~t~~~---~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~--l~~~~~h----~~---~V 357 (713)
++.|++||+++++. +..+.. ...+..++|++||++|++++ .++.|.+||+.+++. +..+..+ .. .+
T Consensus 197 ~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 197 GNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp TTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred CCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 88999999999888 777763 46688999999999877665 477899999998877 4443322 22 23
Q ss_pred EEEEEeCCCCCEE-EEEECCCcEEEEEcCCC
Q 005123 358 TALAWHPFHEEYF-VSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 358 ~sl~fsp~~~~~l-asgs~DG~I~Iwd~~~~ 387 (713)
..++|++ ++++| +++..++.|.|||+...
T Consensus 276 ~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 276 NQMALNK-TETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCEEECT-TSSEEEEEETTTTEEEEEETTSC
T ss_pred cceEECC-CCCEEEEecCCCCcEEEEEecCC
Confidence 5689999 56655 55555779999999654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=244.63 Aligned_cols=276 Identities=8% Similarity=-0.018 Sum_probs=223.3
Q ss_pred CCCceEEEEEc-cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC-CEEEEEEccCCCEEEEEeCCCcEE-EEEcCCCc
Q 005123 143 NRCSINRVLWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIK-YWQNNMNN 219 (713)
Q Consensus 143 H~~~V~~v~~s-pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~DG~I~-vwdl~~~~ 219 (713)
|...|.+++|+ |||++|++++ ++.|++|+..+++.. .+..|.. .+.+++|+ |++.|++++.++.|. +||+.+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 34579999999 9999999888 789999999887644 4666777 89999999 999999998888888 99998877
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC-------
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS------- 292 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg------- 292 (713)
..... .+...+.+++|++|+++|++++.++.|++||+.+++....+..|...+.+++|+||+++|++++.++
T Consensus 371 ~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 371 AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 65544 7778999999999999999999999999999999988877778888999999999999999887654
Q ss_pred ---cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-----------------------
Q 005123 293 ---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----------------------- 346 (713)
Q Consensus 293 ---~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~----------------------- 346 (713)
.|++||+.+++ +..+..+...+.+++|++||++|++++.++...+|+......
T Consensus 450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 528 (1045)
T ss_dssp CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence 89999999877 667777888899999999999999999887777776432211
Q ss_pred --------------------EEEeecCCCCeEEEEEeCCCCCEEEE-------------EECCCcEEEEEcCCCCceEEE
Q 005123 347 --------------------LESFRGHRKDVTALAWHPFHEEYFVS-------------GSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 347 --------------------l~~~~~h~~~V~sl~fsp~~~~~las-------------gs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+..+..|...+..+++++ ++.++++ ...+..|++||+.++.. ..
T Consensus 529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~--~~ 605 (1045)
T 1k32_A 529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--TE 605 (1045)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--EE
T ss_pred CcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcE--EE
Confidence 123334567789999999 6676664 12345688888876653 22
Q ss_pred ecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 394 HNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
+. ..+.+++|++||..|++ .++.|++|+++...
T Consensus 606 l~---~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 606 VK---NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EE---EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ee---cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 22 56889999999977765 66799999997765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=245.71 Aligned_cols=278 Identities=11% Similarity=0.053 Sum_probs=224.6
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCC-CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
..+.+|...|.+++|+++ .++++++.|+.+.||++.. +.....+..|. .+.+++|++||++|+++. ++.|.+||+.
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCC
Confidence 345789999999999988 6667778889999997543 33445555554 466789999999998875 8999999995
Q ss_pred CCceeeeecc-----------CCCCeeEEEEe-cCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-ceEEEEEcCCCC
Q 005123 217 MNNVKANKSA-----------HKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKS 283 (713)
Q Consensus 217 ~~~~~~~~~~-----------~~~~V~~l~fs-~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-~V~sl~~spdg~ 283 (713)
...+. .+.. +...+.+++|+ +|+++|++++ ++.|++||+.+++.. .+..+.. .+.+++|+ |++
T Consensus 274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence 54443 4333 33468999999 9999999888 789999999877644 4556666 89999999 999
Q ss_pred EEEEEeCCCcEE-EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 284 LLVSGGKDSLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 284 ~L~sgs~Dg~I~-IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.|++++.+..|. +||+.+++.. .+..+...+.+++|++||++|++++.++.|++||+.+++....+..|...|.+++|
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 999999888899 9999877654 34477788999999999999999999999999999999988888789999999999
Q ss_pred eCCCCCEEEEEECCC----------cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEecC
Q 005123 363 HPFHEEYFVSGSLDG----------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWCRN 426 (713)
Q Consensus 363 sp~~~~~lasgs~DG----------~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd~~ 426 (713)
+| ++++|++++.++ .|++||+.++. ...+..|...+.+++|++||..|+ +.++..++|+..
T Consensus 429 Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 429 SD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99 788888776644 89999997754 455566788899999999997664 377777888753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-21 Score=203.32 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=187.4
Q ss_pred EEEEEEC----CCcEEEEe--CCCCceEE-EEeccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCce--eeeec
Q 005123 158 RLITGSQ----SGEFTLWN--GQSFNFEM-ILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNV--KANKS 225 (713)
Q Consensus 158 ~Latgs~----dg~V~Iwd--~~t~~~~~-~l~~h~~~V~sl~~spdg~~L~sgs~---DG~I~vwdl~~~~~--~~~~~ 225 (713)
+|++|+. ++.|++|+ .++++... ....+...+..++|++|++ |++++. ++.|.+||+.+++. +..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4555543 44566665 44555443 3344567788899999999 555544 68999999977653 33334
Q ss_pred cCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCC-C--eeEEEEccC---------CCceEEEEEcCCCCEEEEEeCCC
Q 005123 226 AHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-C--QEERSLTGH---------GWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~-~--~~~~~l~~h---------~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
.+...+..++|++|+++|++++ .+++|++||+.. + +.+..+... ...+.+++|+++++++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5677899999999999988888 689999999963 2 223333221 23488999999999666666788
Q ss_pred cEEEEECC-CCceEE--EEcc-CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC--Cee--EEEeecCC------CCe
Q 005123 293 LVKLWDAK-SGRELC--SFHG-HKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA--MKE--LESFRGHR------KDV 357 (713)
Q Consensus 293 ~I~IwDl~-t~~~~~--~~~~-h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t--~~~--l~~~~~h~------~~V 357 (713)
.|++||++ +++... .+.. ....+..++|++||++|+++ ..++.|++||++. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 454322 2222 23467889999999977664 5678999999874 443 23333322 348
Q ss_pred EEEEEeCCCCCEE-EEEECCCcEEEEEcCCCC--ceEEEecccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 358 TALAWHPFHEEYF-VSGSLDGSIFHWLVGHET--PQVEIHNVHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 358 ~sl~fsp~~~~~l-asgs~DG~I~Iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
..++|++ ++++| ++...++.|.+|+++... ..+.....+...+.+++|++|+.+|+ + .++.|.+|+++...
T Consensus 243 ~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 243 AAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp EEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCC
Confidence 8999999 56654 667778999999996432 22333344556789999999997554 3 45899999886543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=233.08 Aligned_cols=272 Identities=12% Similarity=0.165 Sum_probs=197.9
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceE-EEEeccC-----------------CCEEEEEEccCCCEEEEEeCCC
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-MILQAHD-----------------HAIRSMVWSHNDNWMVSGDDGG 208 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~-~~l~~h~-----------------~~V~sl~~spdg~~L~sgs~DG 208 (713)
+..+.|+ ++.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|++| +.|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 5557888 67788888888 8 9999998873 4444333 56999999999 7666664 59
Q ss_pred cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-----CeeEEEEccCCCc-----------
Q 005123 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEERSLTGHGWD----------- 272 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-----~~~~~~l~~h~~~----------- 272 (713)
.|++||+.+++.... ..+...+.+++|++|+++|+++ .|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 999999998876544 4556778999999999999985 679999999988 7665444333332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEEc--cCCCC
Q 005123 273 ---VKSVDWHPTKSLLVSGG---------------------------------KDSLVKLWDAKSGRELCSFH--GHKNM 314 (713)
Q Consensus 273 ---V~sl~~spdg~~L~sgs---------------------------------~Dg~I~IwDl~t~~~~~~~~--~h~~~ 314 (713)
+.+++|+||+++|++++ .+..|++||+++++...... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48999999999999987 34679999999887654432 45677
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEEee-c-CCC---CeEEEEEeC-CCCCEEEEEECCCcEEEEE
Q 005123 315 VLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR-G-HRK---DVTALAWHP-FHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 315 I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~~~-~-h~~---~V~sl~fsp-~~~~~lasgs~DG~I~Iwd 383 (713)
+.+++|++||++|++++.++ .|++||+.+++.+..+. . +.. .+.+++|++ .++++|++++.|+.++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988776 89999999984333332 2 222 246789998 1356888999999999999
Q ss_pred cCCCCceEEEecccCCCeEE-EEEcCCCcEEE--E-eCC--cEEEEecC
Q 005123 384 VGHETPQVEIHNVHDNTVWD-LAWHPIGYLLC--S-NDH--TTKFWCRN 426 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~-l~~spdg~~la--S-~Dg--~v~iWd~~ 426 (713)
++........+..+...|.+ ++|++++..|+ + .++ .++||.++
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 87444455666667777877 79999996553 3 343 34555444
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=202.38 Aligned_cols=240 Identities=9% Similarity=0.034 Sum_probs=189.3
Q ss_pred ceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEecc-----CCCEEEEEEccCCCEEEEEe------------CC
Q 005123 146 SINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAH-----DHAIRSMVWSHNDNWMVSGD------------DG 207 (713)
Q Consensus 146 ~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h-----~~~V~sl~~spdg~~L~sgs------------~D 207 (713)
.+.+++|++++++|+++ ..++.|++||+.+++.+..+... ...+.+++|++++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47789999999877654 55789999999999888776642 22577899999999999886 57
Q ss_pred CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+.|.+||+.+++.+..+.. ...+.+++|++++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+++++.|++
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 9999999999887766654 5568899999999988888 68899999999988877764431 113378888886655
Q ss_pred EeCCC------------------------cEEEEECCCCceE-EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 288 GGKDS------------------------LVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 288 gs~Dg------------------------~I~IwDl~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.+.++ .|.+||+++++.. ..+..+...+.+++|++|+++|+++ ++.|++||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 54332 4689999998764 2234456678899999999999988 7899999999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+++.+..+.. ...+.+++|++ ++++|++++.++.|++||+.+.+....+
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 269 KNASIKRVPL-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp TTEEEEEEEC-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCcCcceecC-CCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 9998887764 35678999999 6778888888999999999877654443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=201.70 Aligned_cols=243 Identities=9% Similarity=0.097 Sum_probs=176.7
Q ss_pred CCCceEEEEEccCCCEEEEEEC---CCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNN 216 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~---dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~ 216 (713)
+...+..++|++||+ |++++. ++.|++||+.+++ .+..+..+...+..++|++|+++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 445678899999999 665554 6899999997765 3344455778899999999999998887 67999999996
Q ss_pred C-Cc--eeeeecc---------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcC-CCeeEE--EEcc-CCCceEEEEEcC
Q 005123 217 M-NN--VKANKSA---------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEER--SLTG-HGWDVKSVDWHP 280 (713)
Q Consensus 217 ~-~~--~~~~~~~---------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~-~~~~~~--~l~~-h~~~V~sl~~sp 280 (713)
. +. .+..+.. ....+.+++|+++++++++...++.|++||+. +++... .+.. ....+..++|++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3 22 2222211 12348899999999966666678899999998 443322 2222 234688999999
Q ss_pred CCCEEEE-EeCCCcEEEEECCC--Cce--EEEEccCC------CCeEEEEEcCCCCEEE-EEECCCeEEEEECC---CCe
Q 005123 281 TKSLLVS-GGKDSLVKLWDAKS--GRE--LCSFHGHK------NMVLCVKWNQNGNWVL-TASKDQIIKLYDIR---AMK 345 (713)
Q Consensus 281 dg~~L~s-gs~Dg~I~IwDl~t--~~~--~~~~~~h~------~~I~si~fspdg~~La-tgs~Dg~I~IwDl~---t~~ 345 (713)
|+++|++ +..++.|.+||++. ++. +..+.... ..+..++|++||++|+ +...++.|.+||+. +.+
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996666 45678999999874 443 22332222 4588999999999885 45568999999997 335
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEEC-CCcEEEEEcCCC
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHE 387 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~~~ 387 (713)
.+..+..+...+..++|++ ++++|++++. ++.|.+|+++..
T Consensus 277 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp EEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTT
T ss_pred EeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCC
Confidence 5666776777789999999 6777776665 589999976543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=216.06 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=159.1
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----------ceEE-----EEeccCCCEEEEEEccCCCEEE----EE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----------NFEM-----ILQAHDHAIRSMVWSHNDNWMV----SG 204 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----------~~~~-----~l~~h~~~V~sl~~spdg~~L~----sg 204 (713)
...++++++++++.+|++++.|+ |+||+..+. ..+. ....+...|++++|++++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34588999999999999999988 888863210 0111 1123567899999999999999 77
Q ss_pred eCCCcEEEEEcCCC--------c---eeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc
Q 005123 205 DDGGAIKYWQNNMN--------N---VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272 (713)
Q Consensus 205 s~DG~I~vwdl~~~--------~---~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~ 272 (713)
+.|+.|+|||+++. + ....+.+|...|++++|+++ +.+|++++.||+|++||++++..+.....|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998654 1 13455678999999999998 789999999999999999998777677778899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC-------CCCeEEEEEcCCCCEEEE-EECCC------eEEE
Q 005123 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-------KNMVLCVKWNQNGNWVLT-ASKDQ------IIKL 338 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h-------~~~I~si~fspdg~~Lat-gs~Dg------~I~I 338 (713)
|.+++|++++++|++|+.|++|++||++ ++....+..+ ...|.+++|++++.++++ .+.|| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 5655555433 237999999998877764 33443 3999
Q ss_pred EECCCC
Q 005123 339 YDIRAM 344 (713)
Q Consensus 339 wDl~t~ 344 (713)
||+++.
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-20 Score=198.28 Aligned_cols=261 Identities=6% Similarity=0.024 Sum_probs=186.3
Q ss_pred CCCceEEEEEccCCCEEEEEECC----CcEEEEeCCC--Cce--EEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEE
Q 005123 143 NRCSINRVLWTPTGRRLITGSQS----GEFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW 213 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~d----g~V~Iwd~~t--~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vw 213 (713)
+...+..++|++|+++|++++.+ +.|.+|++.. ++. +..+..+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999886 7999998765 433 3333445667888888 888888776 57899999
Q ss_pred EcCCCceeeeec--------------cCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCee------E-------EE
Q 005123 214 QNNMNNVKANKS--------------AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE------E-------RS 265 (713)
Q Consensus 214 dl~~~~~~~~~~--------------~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~------~-------~~ 265 (713)
++.....+..+. .+...+.+++|++++++|++++. ++.|++|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543322111 11234578999999997766654 78999999875431 1 22
Q ss_pred EccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEc---cCCCCeEEEEEcCCCCEEEEEECC--CeEE
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRE--LCSFH---GHKNMVLCVKWNQNGNWVLTASKD--QIIK 337 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~--~~~~~---~h~~~I~si~fspdg~~Latgs~D--g~I~ 337 (713)
.......+.+++|++++++|++++ .++.|.+||+++++. +..+. .+.....+++|++||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233456788999999999888777 589999999987654 22222 233457899999999999877765 8999
Q ss_pred EEECC--CCe--eEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEc
Q 005123 338 LYDIR--AMK--ELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWH 407 (713)
Q Consensus 338 IwDl~--t~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~s 407 (713)
|||++ +++ .+..+.. ...+.+++|++ ++++|++++ .++.|.+|+++.....+... ..+...+.||+|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 344 4455554 56788999999 677777666 67899998775433333332 2345678999886
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=197.93 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=188.2
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCC---------EEEEEEccCCCEEEEEe--CCCcEEE
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHA---------IRSMVWSHNDNWMVSGD--DGGAIKY 212 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~---------V~sl~~spdg~~L~sgs--~DG~I~v 212 (713)
..+.+++|++++++|++++ .++.|.+||..+++.+..+..+... +.+++|++++++|++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 3477899999999766554 4799999999999988888765432 78999999999888776 4789999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc----CCCceEEEEEcCCCCEEEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----HGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~----h~~~V~sl~~spdg~~L~sg 288 (713)
||.++++.+..+..+...+.+++|++++++|++++.++.|.+||+.+++.+..+.. +...+.+++|++++++|+++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998888765667789999999999999999999999999999988877764 45568899999999977776
Q ss_pred eC-CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCC
Q 005123 289 GK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 289 s~-Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+. ++.|.+||+++++.+..+.... ..+++|++++++|++++ .++.|.+||+.+++.+..+.. ...+.+++|++ +
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-d 324 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSA-D 324 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECT-T
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcC-C
Confidence 65 4899999999999888776433 36799999999777666 689999999999998888774 34789999999 5
Q ss_pred CCEEEEEECC
Q 005123 367 EEYFVSGSLD 376 (713)
Q Consensus 367 ~~~lasgs~D 376 (713)
+++|+++..+
T Consensus 325 g~~l~v~~~~ 334 (353)
T 3vgz_A 325 GKTLYVSVKQ 334 (353)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 6655555444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-21 Score=201.81 Aligned_cols=236 Identities=9% Similarity=0.029 Sum_probs=184.5
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeecc
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
.++++++++++++++.++.|++||..+++.+..+..+. ..+..++|++++++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999998888877543 2578999999998765 445689999999999887766543
Q ss_pred C------CCCeeEEEEecCCCEEEEEECC------------CeEEEEEcCCCe---eEEEEccCCCceEEEEEcCCCCEE
Q 005123 227 H------KESVRDLSFCRTDLKFCSCSDD------------TTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 227 ~------~~~V~~l~fs~dg~~Las~s~D------------g~I~iwDl~~~~---~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
. ...+.+++|++++++|++++.+ +.|.+||+.+++ .+..+. +...+.+++|+++++ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 2 2347899999999999998865 899999998743 233443 344688999999999 5
Q ss_pred EEEeCCCcEEEEECCCCceEEEEccCC-----------------------------------------------------
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFHGHK----------------------------------------------------- 312 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~~h~----------------------------------------------------- 312 (713)
++++ +.|++||+++++.+..+....
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 5554 349999999988776654321
Q ss_pred ---------------CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 313 ---------------NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 313 ---------------~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
..+.+++|++ ++++|+++ ++.|++||+++++.+..+.. ...+.+++|++ ++++|++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTF 315 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCC
Confidence 1345677889 99999888 88999999999998887763 34578999999 56666667888
Q ss_pred CcEEEEEcCCCCceEE
Q 005123 377 GSIFHWLVGHETPQVE 392 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~ 392 (713)
+.|++||+++.+....
T Consensus 316 ~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 316 NDLAVFNPDTLEKVKN 331 (349)
T ss_dssp SEEEEEETTTTEEEEE
T ss_pred CeEEEEeccccceeee
Confidence 9999999977654433
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=236.21 Aligned_cols=279 Identities=7% Similarity=0.003 Sum_probs=196.8
Q ss_pred ceEEEEEccCCCEEEEEEC---------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 146 SINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~---------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.|.+++|||||++|++++. ++.|+|||+.+++.+... .....+.+++|||||++|+++. ++.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4789999999999998876 789999999988762101 1135688999999999999886 7899999998
Q ss_pred CCceeeee-ccCCCC-----------------eeEEEEecCCCEEEEEECCC----------------------------
Q 005123 217 MNNVKANK-SAHKES-----------------VRDLSFCRTDLKFCSCSDDT---------------------------- 250 (713)
Q Consensus 217 ~~~~~~~~-~~~~~~-----------------V~~l~fs~dg~~Las~s~Dg---------------------------- 250 (713)
+++..... .++... ..+++|++||++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 88765433 222221 25899999999999987652
Q ss_pred ------eEEEEEcCCCeeE--EE------EccCCCceEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceEEEE
Q 005123 251 ------TVKVWDFARCQEE--RS------LTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWD----AKSGRELCSF 308 (713)
Q Consensus 251 ------~I~iwDl~~~~~~--~~------l~~h~~~V~sl~~spdg~~L~sgs~D----g~I~IwD----l~t~~~~~~~ 308 (713)
+|++||+.+++.+ .. +..+...+.+++|+||++++++.... ..|.+|| +.+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7899999887642 11 23577789999999998776664432 2488999 8777655444
Q ss_pred ----ccCCCCeE-----EEEEcCCCCEEEE--EECCC--eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 309 ----HGHKNMVL-----CVKWNQNGNWVLT--ASKDQ--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 309 ----~~h~~~I~-----si~fspdg~~Lat--gs~Dg--~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
..+...+. ++.|++||+.|+. ...++ .|++||+.+++ ...+..+...|..+.++ +++.+++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 35666676 8899999996654 33444 57788887766 45555566678888777 45555555554
Q ss_pred ----CCcEEEEEcCCCCc--eEEEecc----cCCCeEEEEEcCCCcEEE---E--eCCcEEEEecCCC
Q 005123 376 ----DGSIFHWLVGHETP--QVEIHNV----HDNTVWDLAWHPIGYLLC---S--NDHTTKFWCRNRP 428 (713)
Q Consensus 376 ----DG~I~Iwd~~~~~~--~~~~~~~----h~~~V~~l~~spdg~~la---S--~Dg~v~iWd~~~~ 428 (713)
++.+++|.+..... ....+.. |...+..+.|++++.+++ + ....+.+|+++..
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 48899998864221 2233322 556788999999885443 2 2246788877543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=225.42 Aligned_cols=287 Identities=9% Similarity=-0.044 Sum_probs=206.4
Q ss_pred eeCCCCCceEEEEEccCCCEEEEE--ECCCcEEEEeCCCCceEEEEeccCCCEE---------EEEEc--cCCCE-EEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITG--SQSGEFTLWNGQSFNFEMILQAHDHAIR---------SMVWS--HNDNW-MVSG 204 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latg--s~dg~V~Iwd~~t~~~~~~l~~h~~~V~---------sl~~s--pdg~~-L~sg 204 (713)
.+.+|...|..++|+++.-+++.. +.++...||....+.....+..+...|. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 355788899999999776555555 4578899998655556667777776666 66676 99998 7765
Q ss_pred eC-CCcEEEEEcC--C-Cceeeeecc-----CCCCeeEEEEecCCCEEEEEECC----------CeEEEEEcCC------
Q 005123 205 DD-GGAIKYWQNN--M-NNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD----------TTVKVWDFAR------ 259 (713)
Q Consensus 205 s~-DG~I~vwdl~--~-~~~~~~~~~-----~~~~V~~l~fs~dg~~Las~s~D----------g~I~iwDl~~------ 259 (713)
+. +..|.+|++. . ++ ...+.. +...+.+++|++|++.|++++.| ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 54 5566666665 2 43 333444 56678999999999999998876 5899999987
Q ss_pred CeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceEEEEccCCCCeEEEEEcCCCCE
Q 005123 260 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAK-SG---RELCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 260 ~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~D--------g~I~IwDl~-t~---~~~~~~~~h~~~I~si~fspdg~~ 326 (713)
++ ...+. .+...+.+++|+|||++|++++.+ ..|++||+. ++ +.......+...+..++|++||++
T Consensus 177 ~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 177 SA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred Cc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 44 34555 556778899999999999988755 379999999 56 444444445788999999999997
Q ss_pred EEEEECCC--eEEEEECCCCeeEEEeecCCCC--------eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc
Q 005123 327 VLTASKDQ--IIKLYDIRAMKELESFRGHRKD--------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (713)
Q Consensus 327 Latgs~Dg--~I~IwDl~t~~~l~~~~~h~~~--------V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~ 396 (713)
+++++.++ .|++||+.+++....+..+... +.+++|++ ++.++++++. +.++||.++........+..
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~ 333 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAAG 333 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECCS
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEecC
Confidence 77887788 6777777677655444433222 56788988 7889999998 99999965443333556666
Q ss_pred cCCCeEEE-EEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 397 HDNTVWDL-AWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 397 h~~~V~~l-~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
+...+..+ +++.+..++++ .+....||.++..+
T Consensus 334 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 334 PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 77778877 66666555543 55666777665433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-19 Score=195.49 Aligned_cols=271 Identities=8% Similarity=0.094 Sum_probs=187.0
Q ss_pred CCEEEEEEC----CCcEEEEeC--CCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCC--Cce--e
Q 005123 156 GRRLITGSQ----SGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNM--NNV--K 221 (713)
Q Consensus 156 g~~Latgs~----dg~V~Iwd~--~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwdl~~--~~~--~ 221 (713)
..++++|+. ++.|++|++ ++++.......+...+..++|++|+++|++++.+ +.|.+|+++. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345666654 567888865 5565544333367788899999999999998876 7999998875 433 2
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEE------cc--------CCCceEEEEEcCCCCEEE
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSL------TG--------HGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l------~~--------h~~~V~sl~~spdg~~L~ 286 (713)
.....+......+++ ++++|++++ .+++|.+||+.....+..+ .+ +...+.+++|+|++++|+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 233335566778888 888877776 5789999999754322111 11 122358899999999776
Q ss_pred EEe-CCCcEEEEECCCCce------E-------EEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee--EEE
Q 005123 287 SGG-KDSLVKLWDAKSGRE------L-------CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LES 349 (713)
Q Consensus 287 sgs-~Dg~I~IwDl~t~~~------~-------~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~--l~~ 349 (713)
+++ .++.|++|+++.... + .........+..++|++||++|++++ .++.|.+||+++++. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 665 478999998875431 1 12233455688999999999888877 689999999987754 233
Q ss_pred ee---cCCCCeEEEEEeCCCCCEEEEEEC--CCcEEEEEcCCC--Cc-eEEEecccCCCeEEEEEcCCCcEEE-E--eCC
Q 005123 350 FR---GHRKDVTALAWHPFHEEYFVSGSL--DGSIFHWLVGHE--TP-QVEIHNVHDNTVWDLAWHPIGYLLC-S--NDH 418 (713)
Q Consensus 350 ~~---~h~~~V~sl~fsp~~~~~lasgs~--DG~I~Iwd~~~~--~~-~~~~~~~h~~~V~~l~~spdg~~la-S--~Dg 418 (713)
+. .+...+..++|++ ++++|+++.. ++.|.+|+++.. .. .+..... ...+.+++|++|+.+|+ + .++
T Consensus 251 ~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 32 2335578999999 6777765555 489999999632 21 2222222 45788999999997554 3 579
Q ss_pred cEEEEecCCCCC
Q 005123 419 TTKFWCRNRPGD 430 (713)
Q Consensus 419 ~v~iWd~~~~~~ 430 (713)
.|.+|+++....
T Consensus 329 ~v~v~~~d~~~g 340 (361)
T 3scy_A 329 VIQIFERDQATG 340 (361)
T ss_dssp EEEEEEECTTTC
T ss_pred CEEEEEEECCCC
Confidence 999998875443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=7e-21 Score=205.92 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=201.8
Q ss_pred eeCCCCCceEE-----EEEccCCCEEEEEEC-CC--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q 005123 139 SLNKNRCSINR-----VLWTPTGRRLITGSQ-SG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (713)
Q Consensus 139 ~l~~H~~~V~~-----v~~spdg~~Latgs~-dg--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I 210 (713)
.+..|...+.. .+|+|||++|++++. ++ .|++||+.+++.......+...+.+++|++|++.|+.++.++.|
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l 104 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL 104 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence 34455555555 889999999999887 66 48889999988777666666666678899999999999999999
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEE--EecCCCEEEEEE----------------------CCCeEEEEEcCCCeeEEEE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCS----------------------DDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~--fs~dg~~Las~s----------------------~Dg~I~iwDl~~~~~~~~l 266 (713)
++||+.+++.......+...+.... +++++++++... .+..|++||+.+++... +
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l 183 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-I 183 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-E
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-e
Confidence 9999999987766666655554444 478998887432 34689999999886544 4
Q ss_pred ccCCCceEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceEEEEccCC--CCeEEEEEcCCCCEEEEEEC-CC--
Q 005123 267 TGHGWDVKSVDWHP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHK--NMVLCVKWNQNGNWVLTASK-DQ-- 334 (713)
Q Consensus 267 ~~h~~~V~sl~~sp-dg~~L~sgs~D------g~I~IwDl~t~~~~~~~~~h~--~~I~si~fspdg~~Latgs~-Dg-- 334 (713)
..+...+..++|+| |++.|+.++.+ ..|.++|+.+++. ..+..+. ..+..++|++||+.|+..+. ++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 44667799999999 99999887763 3788888876544 3343333 35788999999998765443 22
Q ss_pred --eEEEEECCCCeeEE--EeecCCC---CeEEEEEeCCCCCEEEEE---------ECCCcEEEEEcCCCCceEEEecccC
Q 005123 335 --IIKLYDIRAMKELE--SFRGHRK---DVTALAWHPFHEEYFVSG---------SLDGSIFHWLVGHETPQVEIHNVHD 398 (713)
Q Consensus 335 --~I~IwDl~t~~~l~--~~~~h~~---~V~sl~fsp~~~~~lasg---------s~DG~I~Iwd~~~~~~~~~~~~~h~ 398 (713)
.|++||+.+++... .+..+.. ....++|++ +++.|+.. ..+..|++||+.++.. ..+..+.
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~ 339 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHD 339 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEE--EEEEECC
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCce--EEecccc
Confidence 39999999887432 3332100 011236899 45555432 4566899999976542 3333344
Q ss_pred C-----------CeEEEEEcCCCcEEE--E-eCCcEEEEecCCCC
Q 005123 399 N-----------TVWDLAWHPIGYLLC--S-NDHTTKFWCRNRPG 429 (713)
Q Consensus 399 ~-----------~V~~l~~spdg~~la--S-~Dg~v~iWd~~~~~ 429 (713)
. .+.+++|++||..|+ + .++...||.++...
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 4 578899999996654 3 67888898876544
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=229.73 Aligned_cols=274 Identities=10% Similarity=0.050 Sum_probs=198.7
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC---CEEEEEEccCCCEEEEEeC---------CCcEEEEEcC
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDD---------GGAIKYWQNN 216 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V~sl~~spdg~~L~sgs~---------DG~I~vwdl~ 216 (713)
+++|++|++++ +.+.|+.|++||+.+++....+..+.. .|.+++|||||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67999999644 455799999999999988777766544 4899999999999998876 6899999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-ccCCCce-----------------EEEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV-----------------KSVDW 278 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~V-----------------~sl~~ 278 (713)
+++.+... .....+.+++|+|||+.|+.+. |+.|++||+.+++..... .++...| .+++|
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 98763111 1135689999999999999886 779999999887664432 2222222 58999
Q ss_pred cCCCCEEEEEeCCC----------------------------------cEEEEECCCCceE--EE------EccCCCCeE
Q 005123 279 HPTKSLLVSGGKDS----------------------------------LVKLWDAKSGREL--CS------FHGHKNMVL 316 (713)
Q Consensus 279 spdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~~--~~------~~~h~~~I~ 316 (713)
+|||++|++++.|. .|++||+.+++.+ .. +..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999988652 7889999987653 11 235777899
Q ss_pred EEEEcCCCCEEEEEECC----CeEEEEE----CCCCeeEEEe----ecCCCCeE-----EEEEeCCCCCEEE-EEECCCc
Q 005123 317 CVKWNQNGNWVLTASKD----QIIKLYD----IRAMKELESF----RGHRKDVT-----ALAWHPFHEEYFV-SGSLDGS 378 (713)
Q Consensus 317 si~fspdg~~Latgs~D----g~I~IwD----l~t~~~l~~~----~~h~~~V~-----sl~fsp~~~~~la-sgs~DG~ 378 (713)
+++||||++++++.... ..|++|| +.+++....+ ..|...|. .++|++++..+++ +...+|.
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 99999998777664432 2489999 8887766555 46777776 8899994444433 3445664
Q ss_pred --EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EE-e-----CCcEEEEecCCC
Q 005123 379 --IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CS-N-----DHTTKFWCRNRP 428 (713)
Q Consensus 379 --I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS-~-----Dg~v~iWd~~~~ 428 (713)
|++||+..+. ...+..+...|..+.++ ++..+ .+ . ++.++||.++..
T Consensus 337 ~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 337 KHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp EEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred eEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 6666665444 34444455668877777 66444 33 3 478999998763
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=211.66 Aligned_cols=212 Identities=13% Similarity=0.226 Sum_probs=164.5
Q ss_pred CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-----------ceee----eeccCCCC
Q 005123 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-----------NVKA----NKSAHKES 230 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-----------~~~~----~~~~~~~~ 230 (713)
+.|++|+.... .....++.+++++++.+|++++.|+ |+||+.... .... ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888764321 1345688999999999999999888 888874311 1110 01234567
Q ss_pred eeEEEEecCCCEEE----EEECCCeEEEEEcCCC--------e---eEEEEccCCCceEEEEEcCC-CCEEEEEeCCCcE
Q 005123 231 VRDLSFCRTDLKFC----SCSDDTTVKVWDFARC--------Q---EERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLV 294 (713)
Q Consensus 231 V~~l~fs~dg~~La----s~s~Dg~I~iwDl~~~--------~---~~~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I 294 (713)
|++++|++++++|+ +++.|++|+|||+++. + .+..+.+|...|.+|+|+|+ +++|++++.|++|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 6788999999998653 1 24455678999999999997 7899999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-------CCeEEEEEeCCCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHE 367 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-------~~V~sl~fsp~~~ 367 (713)
+|||++++..+.....|...|++++|+++|++|++|+.|+.|++||++ ++....+..|. ..|.+++|++ +.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TY 252 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TT
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-Cc
Confidence 999999987777777788999999999999999999999999999998 55555554432 3799999998 55
Q ss_pred CEEEE-EECCCc------EEEEEcCCC
Q 005123 368 EYFVS-GSLDGS------IFHWLVGHE 387 (713)
Q Consensus 368 ~~las-gs~DG~------I~Iwd~~~~ 387 (713)
.++++ .+.||. +++|++++.
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 55543 444543 899999765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-19 Score=190.51 Aligned_cols=269 Identities=12% Similarity=0.083 Sum_probs=184.8
Q ss_pred EEEEEECC--CcEEEEeC--CCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeecc-CC
Q 005123 158 RLITGSQS--GEFTLWNG--QSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANKSA-HK 228 (713)
Q Consensus 158 ~Latgs~d--g~V~Iwd~--~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~-~~~~~~~~~~-~~ 228 (713)
+|++|+.. +.|++|++ .++++..... .....+..++|++|+++|++++.+ .|.+|++. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46666653 46777664 4555432221 233468899999999999999887 99999997 6765433221 11
Q ss_pred CCeeEEEEecCCCE--EEEEE-------------CCCeEEEEEcC-CCeeEEEEc----cCCCceEEEEEcCCCCEEEEE
Q 005123 229 ESVRDLSFCRTDLK--FCSCS-------------DDTTVKVWDFA-RCQEERSLT----GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 229 ~~V~~l~fs~dg~~--Las~s-------------~Dg~I~iwDl~-~~~~~~~l~----~h~~~V~sl~~spdg~~L~sg 288 (713)
..+.+++|++|+++ +++++ .++++.+|++. +++....+. .+...+.+++|+||+++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 33667899999995 44543 68999999997 455443333 245679999999999988877
Q ss_pred eC-CCcEEEEECC-CCceE--EEEc--cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeeE---EEeec----
Q 005123 289 GK-DSLVKLWDAK-SGREL--CSFH--GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIR--AMKEL---ESFRG---- 352 (713)
Q Consensus 289 s~-Dg~I~IwDl~-t~~~~--~~~~--~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~--t~~~l---~~~~~---- 352 (713)
+. ++.|++||++ +++.. ..+. .+...+..++|++||++|++++. ++.|.+|+++ +++.. ..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6789999998 67643 2333 23567999999999999988775 6899999875 45532 12221
Q ss_pred ---CCC------CeEEEE-EeCCCCCEEEEEECC-C-----cEEEEEcCCCCceEE---EecccCCCeEEEEEcC---CC
Q 005123 353 ---HRK------DVTALA-WHPFHEEYFVSGSLD-G-----SIFHWLVGHETPQVE---IHNVHDNTVWDLAWHP---IG 410 (713)
Q Consensus 353 ---h~~------~V~sl~-fsp~~~~~lasgs~D-G-----~I~Iwd~~~~~~~~~---~~~~h~~~V~~l~~sp---dg 410 (713)
|.. .+..++ |++ ++++|++++.+ . +|.+|+++....... ....+...+..++|+| |+
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 122 588999 999 67776665532 2 899999963333332 2223455677899999 78
Q ss_pred cEEEE---eCCcEEEEecCCC
Q 005123 411 YLLCS---NDHTTKFWCRNRP 428 (713)
Q Consensus 411 ~~laS---~Dg~v~iWd~~~~ 428 (713)
.+|+. .++.|+||+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 76654 4589999998754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-19 Score=189.02 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=176.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCC-CCceEEEEecc-CCCEEEEEEccCCCE--EEEEe-------------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAH-DHAIRSMVWSHNDNW--MVSGD------------- 205 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-t~~~~~~l~~h-~~~V~sl~~spdg~~--L~sgs------------- 205 (713)
....+..++|++|+++|++++.+ .|.+||+. +++........ .+.+.+++|++|+++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33467889999999999999988 99999987 77665433311 133567899999995 44543
Q ss_pred CCCcEEEEEcCC-Cceeeeec----cCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcC-CCeeE--EEEc--cCCCceE
Q 005123 206 DGGAIKYWQNNM-NNVKANKS----AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFA-RCQEE--RSLT--GHGWDVK 274 (713)
Q Consensus 206 ~DG~I~vwdl~~-~~~~~~~~----~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~-~~~~~--~~l~--~h~~~V~ 274 (713)
.+|.+.+|+++. ++....+. .+...+.+++|++|+++|++++. ++.|++||+. +++.. ..+. .+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974 55443332 24567999999999998887764 6799999998 66543 2333 2356799
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECC--CCceEE---EEcc-------CCC------CeEEEE-EcCCCCEEEEEECCC
Q 005123 275 SVDWHPTKSLLVSGGK-DSLVKLWDAK--SGRELC---SFHG-------HKN------MVLCVK-WNQNGNWVLTASKDQ 334 (713)
Q Consensus 275 sl~~spdg~~L~sgs~-Dg~I~IwDl~--t~~~~~---~~~~-------h~~------~I~si~-fspdg~~Latgs~Dg 334 (713)
.++|++++++|++++. ++.|.+|+++ +++... .+.. +.. .+..++ |++||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999888775 6889999765 455421 2221 121 588999 999999988776432
Q ss_pred ------eEEEEECC-CCeeEE---EeecCCCCeEEEEEeCC--CCCEEEEEEC-CCcEEEEEcCCC
Q 005123 335 ------IIKLYDIR-AMKELE---SFRGHRKDVTALAWHPF--HEEYFVSGSL-DGSIFHWLVGHE 387 (713)
Q Consensus 335 ------~I~IwDl~-t~~~l~---~~~~h~~~V~sl~fsp~--~~~~lasgs~-DG~I~Iwd~~~~ 387 (713)
.|.+||++ +++... .+..+...+..++|+|. ++++|++++. ++.|.||+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 565443 23335556778899994 4677777776 589999998655
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-19 Score=187.14 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=173.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEE-EECCCeEEEEEcCCCeeEEEEcc
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las-~s~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
.++++++++++++++.++.|++||+.+++.+..+.... ..+..++|+++++++++ +..++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45677788899999999999999999998877765433 25789999999987654 45689999999999888777653
Q ss_pred CC------CceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEccCCCCeEEEEEcCCCCEE
Q 005123 269 HG------WDVKSVDWHPTKSLLVSGGKD------------SLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 269 h~------~~V~sl~~spdg~~L~sgs~D------------g~I~IwDl~t~~~---~~~~~~h~~~I~si~fspdg~~L 327 (713)
.. ..+.+++|++++++|++++.+ +.|.+||+.+++. +..+. +...+.+++|++|++ |
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 32 237899999999999998865 8999999988543 33443 344688999999999 6
Q ss_pred EEEECCCeEEEEECCCCeeEEEeecCC-----------------------------------------------------
Q 005123 328 LTASKDQIIKLYDIRAMKELESFRGHR----------------------------------------------------- 354 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t~~~l~~~~~h~----------------------------------------------------- 354 (713)
++++. .|++||+++++.+..+..+.
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 65543 49999999888776654331
Q ss_pred ---------------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EE-eC
Q 005123 355 ---------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CS-ND 417 (713)
Q Consensus 355 ---------------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS-~D 417 (713)
..+.+++|++.++++|+++ ++.|++||+.+.+....+.. ...+.+++|++++..| ++ .+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCC
Confidence 1244566777235566666 88999999987654433332 3457899999998544 34 78
Q ss_pred CcEEEEecCCCCC
Q 005123 418 HTTKFWCRNRPGD 430 (713)
Q Consensus 418 g~v~iWd~~~~~~ 430 (713)
+.|++||++....
T Consensus 316 ~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 316 NDLAVFNPDTLEK 328 (349)
T ss_dssp SEEEEEETTTTEE
T ss_pred CeEEEEeccccce
Confidence 9999999865443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=197.06 Aligned_cols=280 Identities=10% Similarity=0.004 Sum_probs=190.7
Q ss_pred ceEEEEEccCCCEEEEEECC---CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 146 SINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~d---g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
.+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|++|+++|+.++.++.|++||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999998877653 468899998876544333333223347899999999999999999999999887665
Q ss_pred eeccCCCCeeE-------------------EEEecCCCEEEEE-----ECCCeEEEEEcCCCeeEEEEccCCCceEEEEE
Q 005123 223 NKSAHKESVRD-------------------LSFCRTDLKFCSC-----SDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 278 (713)
Q Consensus 223 ~~~~~~~~V~~-------------------l~fs~dg~~Las~-----s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~ 278 (713)
....+...... +.|+++++.++.+ ..+..|++||+.+++..... .+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence 55433332222 3456666665544 35678999999887765444 46678999999
Q ss_pred cC-CCCEEEEEeCC------CcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005123 279 HP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (713)
Q Consensus 279 sp-dg~~L~sgs~D------g~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~ 344 (713)
++ +++.|+.++.+ ..|.+||+.+++.. .+..+ ...+..++|++||++|++++.+ +.|++||+.++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 78877776653 36889998765533 33322 2357889999999988777544 45999999987
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCCEEEEEE----------------CCCcEEEEEcCCCCceEEEecccCC---------
Q 005123 345 KELESFRGHRKDVTALAWHPFHEEYFVSGS----------------LDGSIFHWLVGHETPQVEIHNVHDN--------- 399 (713)
Q Consensus 345 ~~l~~~~~h~~~V~sl~fsp~~~~~lasgs----------------~DG~I~Iwd~~~~~~~~~~~~~h~~--------- 399 (713)
+....... .. +. +.|++.++++|++++ .+..|++||+.++... .+ ..+..
T Consensus 275 ~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 275 ENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KL-CKHSTSWDVLDGDR 349 (396)
T ss_dssp CEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EE-EECCCCCCCBTTBS
T ss_pred CeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-Ec-cCCCCccccccccc
Confidence 65443321 12 33 889982345666654 3468999999766532 22 22333
Q ss_pred --CeEEEEEcCCCcEEE--E-eCCcEEEEecCCCCCcc
Q 005123 400 --TVWDLAWHPIGYLLC--S-NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 400 --~V~~l~~spdg~~la--S-~Dg~v~iWd~~~~~~~~ 432 (713)
.+..++|++|+..|+ + .++...||.++..+...
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 256789999996654 3 46777888776554433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=206.60 Aligned_cols=230 Identities=8% Similarity=-0.011 Sum_probs=173.6
Q ss_pred CCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCC--
Q 005123 186 DHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFAR-- 259 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~-- 259 (713)
...|.+++|++||++|++++. ||+++||++++++.......+...+.+++|++| +.+++++. +...+||++..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999998876 999999999776665544333368999999999 77777765 45556655432
Q ss_pred -CeeEEEEccCCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC----
Q 005123 260 -CQEERSLTGHGWDVKSVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---- 333 (713)
Q Consensus 260 -~~~~~~l~~h~~~V~sl~~spdg~~-L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---- 333 (713)
+... .+... ..+...+|+++++. +++.+.++.+.|||+++++......... .+++|||||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33322 23556688887753 3344445556699999887665554332 789999999999988877
Q ss_pred CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEecccCCCeEEEE------
Q 005123 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDNTVWDLA------ 405 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~------ 405 (713)
+.|++||+.+++.. .+..|...+..++||| ++++|++++.++ .|++||++++... +...|...+.+++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccc
Confidence 78999999987754 5677888899999999 788888888888 8999999776644 6666777777777
Q ss_pred --EcCCCcEEEE--eCCcEEEEec
Q 005123 406 --WHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 406 --~spdg~~laS--~Dg~v~iWd~ 425 (713)
|++||.++++ .|++++||++
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999976654 8999999998
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-19 Score=207.00 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=194.3
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCC-----EEEEEEccCCCEEEEEeCC---------CcEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGDDG---------GAIK 211 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~-----V~sl~~spdg~~L~sgs~D---------G~I~ 211 (713)
...+++|++|+++|+++ |+.|++||+.+++....+..|... ...++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999888886 999999999999988888877643 2448899999999988875 5677
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-ccCCCce-----------------
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV----------------- 273 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~~h~~~V----------------- 273 (713)
+||+.+++... +..+...+...+|||||+.||.+. |+.|++||+.+++..+.. .++...+
T Consensus 96 ~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 99999988654 556677899999999999999885 679999999887654321 1222222
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eEEEEc---
Q 005123 274 KSVDWHPTKSLLVSGGKDS------------------------------------LVKLWDAKS---GR--ELCSFH--- 309 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg------------------------------------~I~IwDl~t---~~--~~~~~~--- 309 (713)
.++.|+|||++|+.++.|. +|+|||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3589999999999875322 488899988 73 233443
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCe----eE--EEe--ecCCCCeE-----EEEEeCCCCCE
Q 005123 310 ---GHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMK----EL--ESF--RGHRKDVT-----ALAWHPFHEEY 369 (713)
Q Consensus 310 ---~h~~~I~si~fspdg~~Latgs~----Dg~I~IwDl~t~~----~l--~~~--~~h~~~V~-----sl~fsp~~~~~ 369 (713)
++...+..++|++||++++.... +..|++||+.+++ +. ..+ ..|...|. .++|++ +++.
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~ 332 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNS 332 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCE
Confidence 27778999999999997765543 2379999999887 22 122 44555554 789999 5665
Q ss_pred EE-EEEC-CC--cEEEEEcCCCCceEEEecccCCCeEEEE-EcCCCcEEE-E-e----CCcEEEEecCCCCC
Q 005123 370 FV-SGSL-DG--SIFHWLVGHETPQVEIHNVHDNTVWDLA-WHPIGYLLC-S-N----DHTTKFWCRNRPGD 430 (713)
Q Consensus 370 la-sgs~-DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~-~spdg~~la-S-~----Dg~v~iWd~~~~~~ 430 (713)
|+ ..+. +| .|++||+..+. ...+. .....|..+. |+ ++.++. + . .+...||.++..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~-~~~lT-~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD-CTFIT-KGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS-CEESC-CSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEecc-cCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 55 5554 44 57788876543 33333 3344565554 55 333333 3 3 24567777765543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=206.07 Aligned_cols=276 Identities=8% Similarity=0.014 Sum_probs=186.8
Q ss_pred eEEEEEccCCCEEEEEECC---------CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 147 INRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~d---------g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
...++|||||++|++++.+ +.++|||+.+++.. .+..|...+..++|||||+.||.+. |+.|++|++.+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3468999999999998876 56789999998754 4666778899999999999999885 68999999988
Q ss_pred Cceeeeec-cCCCCe-----------------eEEEEecCCCEEEEEECCC-----------------------------
Q 005123 218 NNVKANKS-AHKESV-----------------RDLSFCRTDLKFCSCSDDT----------------------------- 250 (713)
Q Consensus 218 ~~~~~~~~-~~~~~V-----------------~~l~fs~dg~~Las~s~Dg----------------------------- 250 (713)
++...... ++...+ ..+.|||||++|+.++.|.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 77554322 222222 3589999999999875321
Q ss_pred -------eEEEEEcCC---Ce--eEEEEc------cCCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----e
Q 005123 251 -------TVKVWDFAR---CQ--EERSLT------GHGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR----E 304 (713)
Q Consensus 251 -------~I~iwDl~~---~~--~~~~l~------~h~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~----~ 304 (713)
+|++||+.+ ++ ....+. ++...+..++|+||+++++.... +..|++||+.+++ +
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 588899988 63 233343 27778999999999997666543 2369999999887 2
Q ss_pred E--EEE--ccCCCCeE-----EEEEcCCCCEEE-EEEC-C--CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEE
Q 005123 305 L--CSF--HGHKNMVL-----CVKWNQNGNWVL-TASK-D--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 305 ~--~~~--~~h~~~I~-----si~fspdg~~La-tgs~-D--g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~la 371 (713)
. ..+ ..+...|. .++|++||+.|+ ..+. + ..|++||+.+++... +......|..+.+ .+++.+++
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEE
Confidence 2 222 44555554 789999999887 6654 3 368999998766554 3334555666543 32455555
Q ss_pred EEEC----CCcEEEEEcCCCCceEE-Eecc----cCCCeEEEEEcCCCcEEE-EeC----CcEEEEecC
Q 005123 372 SGSL----DGSIFHWLVGHETPQVE-IHNV----HDNTVWDLAWHPIGYLLC-SND----HTTKFWCRN 426 (713)
Q Consensus 372 sgs~----DG~I~Iwd~~~~~~~~~-~~~~----h~~~V~~l~~spdg~~la-S~D----g~v~iWd~~ 426 (713)
+++. .+...||.++....... .+.. ....+..+.|++++.+++ ... ..+.+++.+
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred EEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 5554 24455555543332222 2321 235788999999997654 222 256666553
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=178.74 Aligned_cols=257 Identities=11% Similarity=0.064 Sum_probs=183.1
Q ss_pred CceEEEEEccCCCEEEEEE---------CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---C--cE
Q 005123 145 CSINRVLWTPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G--AI 210 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs---------~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D---G--~I 210 (713)
..|..++| ||++|+... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34677777 888887653 25679999999876543 3 568899999999999877653 3 37
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC---------------------------CeEEEEEcCCCeeE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---------------------------TTVKVWDFARCQEE 263 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D---------------------------g~I~iwDl~~~~~~ 263 (713)
.+||+.+++........ . +.+++|++|++.|+.++.+ ..|++||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 78888887765544333 3 9999999999998887632 57999999988764
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--- 333 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-------~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D--- 333 (713)
..+.. . .+..++|++++ +++++..+. ...||.+++++. ..+..+ ..+..+ ++||++|++++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 55554 3 78899999999 777776542 334444434443 334333 445544 9999999887754
Q ss_pred -----CeEEEEECCCCeeEEEeecCCCCeEE-EEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 334 -----QIIKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 334 -----g~I~IwDl~t~~~l~~~~~h~~~V~s-l~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
..|++|| +++....+..+...+.. +.|+ + + ++++++.++.++|| +.+ .....+. .+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~-g~~~~~~-~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWD-GEIKPIA-KGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EES-SSEEEEE-CSSSEEEEEEES
T ss_pred CccccceEEEEC--CCceEeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcC-CceEEEe-cCCCeEEeeeee
Confidence 3688888 56655555566777886 8998 4 5 88999999999999 873 3333333 457789999999
Q ss_pred CCCcEEEE-eCCcE-EEEecC
Q 005123 408 PIGYLLCS-NDHTT-KFWCRN 426 (713)
Q Consensus 408 pdg~~laS-~Dg~v-~iWd~~ 426 (713)
+ ..+++. .++.. +||.++
T Consensus 311 ~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 311 E-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S-SEEEEEECSSSCCEEEEES
T ss_pred C-cEEEEEcCCCChHHheEeC
Confidence 9 644443 55554 888886
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-17 Score=177.09 Aligned_cols=241 Identities=7% Similarity=0.035 Sum_probs=188.5
Q ss_pred CCceEEEEEccCCCEEEEEECC------------------------CcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQS------------------------GEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND 198 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~d------------------------g~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg 198 (713)
-+.|.+|+++++|+++++...+ +.|++||..+++.+..+. .+-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999988888777 479999999888876665 344678999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCc-eeeee---------ccCCCCeeEEEEec-CCCEEEEEE-CCCeEEEEEcCCCeeEEEE
Q 005123 199 NWMVSGDDGGAIKYWQNNMNN-VKANK---------SAHKESVRDLSFCR-TDLKFCSCS-DDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~-~~~~~---------~~~~~~V~~l~fs~-dg~~Las~s-~Dg~I~iwDl~~~~~~~~l 266 (713)
+++++...++.|++||.+... .+..+ ..+.....+|++++ ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888888999999986552 33333 23344689999999 777777775 689999999 556666666
Q ss_pred ccC----------CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcC------CCCEE
Q 005123 267 TGH----------GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGNWV 327 (713)
Q Consensus 267 ~~h----------~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fsp------dg~~L 327 (713)
... ......|+++++ ++++++...++.|++||.++++.+..+. .+...+.+++|++ +++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 422 234889999998 6777777788899999999898888874 3556788999998 33322
Q ss_pred EEEECCCeEEEEECCCCeeEEEee---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 328 LTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t~~~l~~~~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++...+..|++||+.+++.+..+. .+...+..|++++ ++.++++...+++|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 223345589999999999988873 5667899999999 678899999999999999853
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-17 Score=167.99 Aligned_cols=239 Identities=10% Similarity=0.112 Sum_probs=182.5
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec------cCCCEEEEEEc-cCCCEEEEEeC-CCcEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA------HDHAIRSMVWS-HNDNWMVSGDD-GGAIKYW 213 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~------h~~~V~sl~~s-pdg~~L~sgs~-DG~I~vw 213 (713)
++-..+.+++++++++++++...++.|++||.. ++.+..+.. +...+.+++++ ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455679999999999988888889999999987 555555542 34578999994 56655555533 7899999
Q ss_pred EcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC
Q 005123 214 QNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 214 dl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
| .+++.+..+. .....+.+++++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 4555555443 334678999999999988877788999999964 45555553 34467899999999988777778
Q ss_pred CCcEEEEECCCCceEEEEccC--CCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeeEEEeecCC--CCeEEEEEeCC
Q 005123 291 DSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHR--KDVTALAWHPF 365 (713)
Q Consensus 291 Dg~I~IwDl~t~~~~~~~~~h--~~~I~si~fspdg~~Latgs~Dg-~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~ 365 (713)
++.|++||.. ++.+..+... ...+..|+++++|+++++...++ .|++||.. ++.+..+..+. ..+.++++++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~- 260 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMD- 260 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEET-
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECC-
Confidence 8999999974 5666666533 36789999999999888887776 99999964 66676666543 3478999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+++++++ +.|++|++|++...
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcEEEE-CCCCeEEEEEcccc
Confidence 6777776 67999999998543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-15 Score=156.66 Aligned_cols=282 Identities=7% Similarity=-0.032 Sum_probs=203.9
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
...+..+...+.+++++++|+++++...++.|.+||.. ++..... ..+...+.+++++++++++++...++.|..||.
T Consensus 7 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 7 ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp EEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 34556677889999999999977766668899999988 5543322 234578999999999988887777889999997
Q ss_pred CCCceee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 216 NMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 216 ~~~~~~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+ ++... .+......+.++++.++++++++...++.|.+||. +++.... +......+.+++++++++++++...++.
T Consensus 86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 6 33322 22224567899999999988887777889999998 4443322 2334567899999999987777777789
Q ss_pred EEEEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCCCCeEEEEEeCCCCCEEE
Q 005123 294 VKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFV 371 (713)
Q Consensus 294 I~IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~~~V~sl~fsp~~~~~la 371 (713)
|.+||. +++.... +......+.+++++++++++++...++.|.+||. +++.... +..+...+.++++++ ++++++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v 240 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWF 240 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEE
Confidence 999998 6655433 2334556889999999987776666889999999 6654332 233456789999998 677777
Q ss_pred EEECCCcEEEEEcCCCCceEEE-ecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~ 427 (713)
+...++.|.+||.+ +. ...+ ...+...+.++++ +++.+.++ ..+.|..++.+.
T Consensus 241 ~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 241 TEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp EETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred eccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence 76678899999983 32 2222 2334567999999 88877665 467777776643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-17 Score=189.17 Aligned_cols=272 Identities=7% Similarity=-0.029 Sum_probs=189.6
Q ss_pred cCCCEEEEEECC-----CcEEEEeCCCCceEEEEe------ccCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCC
Q 005123 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDGG-----AIKYWQNNM 217 (713)
Q Consensus 154 pdg~~Latgs~d-----g~V~Iwd~~t~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~DG-----~I~vwdl~~ 217 (713)
++|++++....+ +.|++.+..+++....+. +|...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 678877765433 244555555544433332 2334688999999999998765433 899999999
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEECCCe----------------EEEEEcCCCee--EEEEcc--CCCceEEEE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT----------------VKVWDFARCQE--ERSLTG--HGWDVKSVD 277 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~----------------I~iwDl~~~~~--~~~l~~--h~~~V~sl~ 277 (713)
++....... ...+.+++|++|++.|+.++.++. |++|++.++.. ...+.. +...+.++.
T Consensus 161 g~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 987654322 223778999999999999988766 99999987653 222332 445688999
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eEEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEEC
Q 005123 278 WHPTKSLLVSGGK-----DSLVKLWDAKS------GR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDI 341 (713)
Q Consensus 278 ~spdg~~L~sgs~-----Dg~I~IwDl~t------~~-~~~~~~~h~~~I~si~fspdg~~Latgs~D----g~I~IwDl 341 (713)
|++|+++|++++. +..|++||+.+ ++ ....+..+...+.. .|+++|+.|+..+.+ ..|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999988765 56899999986 43 35556555555554 488899988877653 36999999
Q ss_pred CCCe--eEEEeecCCC--CeEEEEEeCCCCCEEEEEECCCc--EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE-
Q 005123 342 RAMK--ELESFRGHRK--DVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC- 414 (713)
Q Consensus 342 ~t~~--~l~~~~~h~~--~V~sl~fsp~~~~~lasgs~DG~--I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 414 (713)
.+++ ....+..+.. .|..++|++ ++.++++...|+. |++||+.++. ....+..+.+.|..+++++++..++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEE
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEE
Confidence 8764 2344444543 688899986 6788889988885 5556664444 3344445677889999999884432
Q ss_pred E-----eCCcEEEEecCCCC
Q 005123 415 S-----NDHTTKFWCRNRPG 429 (713)
Q Consensus 415 S-----~Dg~v~iWd~~~~~ 429 (713)
+ ..++|.+||+....
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 2 45789999886544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-16 Score=161.43 Aligned_cols=236 Identities=10% Similarity=0.128 Sum_probs=177.0
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec------cCCCCeeEEEEe-cCCCEEEEEEC-CCeEEEEE
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDLSFC-RTDLKFCSCSD-DTTVKVWD 256 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~------~~~~~V~~l~fs-~dg~~Las~s~-Dg~I~iwD 256 (713)
+-..+.+++++++++++++...++.|.+||.+ ++.+..+. .+...+.+++++ .+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44678999999999988888889999999987 44444442 233578899995 56655555433 88999999
Q ss_pred cCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEEECC
Q 005123 257 FARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 257 l~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latgs~D 333 (713)
.+++.+..+.. +...+.+|+++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++.+.+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 56666666643 34678999999999988877788999999965 56665553 344578999999999977777788
Q ss_pred CeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCEEEEEECCC-cEEEEEcCCCCceEEEecccC--CCeEEEEEcC
Q 005123 334 QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHD--NTVWDLAWHP 408 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG-~I~Iwd~~~~~~~~~~~~~h~--~~V~~l~~sp 408 (713)
+.|++||.. ++.+..+..+ ...+..|++++ +++++++...++ .|.+||.+ +. .+..+..+. ..+.++++++
T Consensus 185 ~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 185 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQ-LISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SC-EEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CC-EEEEEcccCCCCcceeEEECC
Confidence 999999985 5666666543 36789999999 678888888776 99999964 33 233333332 3478999999
Q ss_pred CCcEEEE-eCCcEEEEecCC
Q 005123 409 IGYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 409 dg~~laS-~Dg~v~iWd~~~ 427 (713)
++.++++ .|++|+||++..
T Consensus 261 ~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 261 DGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp TTEEEEEETTTEEEEEECSC
T ss_pred CCcEEEECCCCeEEEEEccc
Confidence 9977765 789999998754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=191.25 Aligned_cols=272 Identities=12% Similarity=0.015 Sum_probs=181.0
Q ss_pred EEEEc--cCCCE-EEEEEC-CCcEEEEeCC--CCceEEEEec-----cCCCEEEEEEccCCCEEEEEeCC----------
Q 005123 149 RVLWT--PTGRR-LITGSQ-SGEFTLWNGQ--SFNFEMILQA-----HDHAIRSMVWSHNDNWMVSGDDG---------- 207 (713)
Q Consensus 149 ~v~~s--pdg~~-Latgs~-dg~V~Iwd~~--t~~~~~~l~~-----h~~~V~sl~~spdg~~L~sgs~D---------- 207 (713)
...|+ |||++ |+.++. +..|++|++. +......+.. |...+.+++|++||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99998 776654 5667777776 3033445555 56788999999999999988876
Q ss_pred CcEEEEEcCC------Cceeeeec-cCCCCeeEEEEecCCCEEEEEECC--------CeEEEEEcC-CC---eeEEEEcc
Q 005123 208 GAIKYWQNNM------NNVKANKS-AHKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFA-RC---QEERSLTG 268 (713)
Q Consensus 208 G~I~vwdl~~------~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~D--------g~I~iwDl~-~~---~~~~~l~~ 268 (713)
..|++||+.+ ++.. .+. .+...+..++|++||++|+.++.+ ..|++||+. ++ +.......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999988 5544 344 555678889999999999987754 379999998 56 44444444
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEccCCCC--------eEEEEEcCCCCEEEEEECCCeEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFHGHKNM--------VLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg--~I~IwDl~t~~~~~~~~~h~~~--------I~si~fspdg~~Latgs~Dg~I~I 338 (713)
+...+.+++|++|++++++++.++ .|.+||+.+++....+..+... +.+++|+++++++++++. +.++|
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 578899999999999888888888 6777777666654433322222 567899999999999988 98888
Q ss_pred E--ECCCCeeEEEeecCCCCeEEE-EEeCCCCCEEEEEECCCc--EEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE
Q 005123 339 Y--DIRAMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 339 w--Dl~t~~~l~~~~~h~~~V~sl-~fsp~~~~~lasgs~DG~--I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 413 (713)
| |+.+++ +..+..+...+..+ +++. +.-++++++.+.. |++||+.++. ...+...+...+....+.....+.
T Consensus 319 ~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~ 395 (662)
T 3azo_A 319 GILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTGR-ARTIGARHTDPVDPAYYPEPQIRT 395 (662)
T ss_dssp EEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTCC-EEEEESCCCCSSCGGGSCCCEEEE
T ss_pred EEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCCc-eEEeecCCcccCCccccCcceEEE
Confidence 8 665555 67777777778777 5543 2333444555544 4555554443 333333343333333333333333
Q ss_pred EE--eCCcEEEEec
Q 005123 414 CS--NDHTTKFWCR 425 (713)
Q Consensus 414 aS--~Dg~v~iWd~ 425 (713)
.. .+..|..|-+
T Consensus 396 ~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 396 FTAPDGREIHAHIY 409 (662)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEcCCCCEEEEEEE
Confidence 32 2335655654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-17 Score=173.41 Aligned_cols=256 Identities=11% Similarity=-0.005 Sum_probs=182.7
Q ss_pred EEEeCCCCceEEEEeccCCCEEE-----EEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccCCCCeeEEEEecCC
Q 005123 169 TLWNGQSFNFEMILQAHDHAIRS-----MVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 169 ~Iwd~~t~~~~~~l~~h~~~V~s-----l~~spdg~~L~sgs~-DG--~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg 240 (713)
..+|..++..+..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++.......+...+.++.|++|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34577788888888888777766 889999999998887 66 48888999988877766666666678899999
Q ss_pred CEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEE--EcCCCCEEEEEe----------------------CCCcEEE
Q 005123 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD--WHPTKSLLVSGG----------------------KDSLVKL 296 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~--~spdg~~L~sgs----------------------~Dg~I~I 296 (713)
+.|+.++.++.|++||+.+++....+..+...+.... +++++++++... .+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999887776666665554444 488999887532 3467999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeeEEEeecCC--CCeEEEEEeCCCC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD------QIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHE 367 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs~D------g~I~IwDl~t~~~l~~~~~h~--~~V~sl~fsp~~~ 367 (713)
||+.+++... +..+...+..++|+| ||++|+.+..+ ..|+++|+.+++. ..+..+. ..+..++|+| ++
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~sp-dg 249 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVP-DG 249 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECT-TS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECC-CC
Confidence 9999886544 444667799999999 99999887753 3788888876544 3343343 3578899999 55
Q ss_pred CEE-EEEECCC----cEEEEEcCCCCceEE-EecccCC---CeEEEEEcCCCcEEE-----------EeCCcEEEEecCC
Q 005123 368 EYF-VSGSLDG----SIFHWLVGHETPQVE-IHNVHDN---TVWDLAWHPIGYLLC-----------SNDHTTKFWCRNR 427 (713)
Q Consensus 368 ~~l-asgs~DG----~I~Iwd~~~~~~~~~-~~~~h~~---~V~~l~~spdg~~la-----------S~Dg~v~iWd~~~ 427 (713)
+.| +++..++ .|++||+.++..... ....+.. ....++|++||..|+ ..+..|++||++.
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 544 4443322 399999987653221 1111000 011236899986554 2356888888765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-17 Score=192.36 Aligned_cols=271 Identities=8% Similarity=-0.102 Sum_probs=184.3
Q ss_pred ccCCCEEEEEECCC-----cEEEEeCCCCceEEEEe------ccCCCEEEEEEccCCCEEEEE-----eCCCcEEEEEcC
Q 005123 153 TPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSG-----DDGGAIKYWQNN 216 (713)
Q Consensus 153 spdg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~------~h~~~V~sl~~spdg~~L~sg-----s~DG~I~vwdl~ 216 (713)
+++|++++....++ .|++.+...++....+. +|...+.+++|||||++|+.+ +.+..|++||++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 36888888776543 34555555554443332 244478999999999999843 344689999999
Q ss_pred CCcee-eeeccCCCCeeEEEEecCCCEEEEEECCCe-------------EEEEEcCCCee--EEEE--ccCCCceEEEEE
Q 005123 217 MNNVK-ANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------------VKVWDFARCQE--ERSL--TGHGWDVKSVDW 278 (713)
Q Consensus 217 ~~~~~-~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~-------------I~iwDl~~~~~--~~~l--~~h~~~V~sl~~ 278 (713)
+++.+ ... ........++|++|++.|+.++.|.. |++|++.++.. ...+ ..+...+.++.|
T Consensus 156 tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 156 SGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 98865 211 11112268999999999999998776 99999987752 2233 234467899999
Q ss_pred cCCCCEEEEEeCCC----cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCee---E
Q 005123 279 HPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKE---L 347 (713)
Q Consensus 279 spdg~~L~sgs~Dg----~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~----Dg~I~IwDl~t~~~---l 347 (713)
++||++|++++.++ .|++||..+++. ..+..+...+....| ++|+ |+..+. ++.|++||+.+++. .
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 99999998887666 677887665543 344445555666666 5666 554443 57899999987653 2
Q ss_pred EEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc-CCCeEEEEEcCCCcEEE----E--eCCc
Q 005123 348 ESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLC----S--NDHT 419 (713)
Q Consensus 348 ~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~la----S--~Dg~ 419 (713)
..+..+ ...|..++|+ ++.++++...|+..+||.++........+..+ .+.|..+++++++..++ + ..++
T Consensus 312 ~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 333333 4457888887 57889999999998888765333333333333 56788889999885443 2 5578
Q ss_pred EEEEecCCCC
Q 005123 420 TKFWCRNRPG 429 (713)
Q Consensus 420 v~iWd~~~~~ 429 (713)
|++||++...
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999986544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=168.62 Aligned_cols=274 Identities=8% Similarity=0.073 Sum_probs=196.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
..|.+++|++++..++..+.++.+++| ..+....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346778889888877777888899999 34556667777788899999999998888888999999999888766554
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC------CC
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK------DS 292 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~------Dg 292 (713)
..+...+.+++++++++++++...+ +.|.+||.++++....+. .....+.+++++++++++++... ++
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 4566789999999999888777666 689999998776543333 24457999999999987776653 35
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC-CeeEEE--------eecCCCCeEEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA-MKELES--------FRGHRKDVTALAW 362 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t-~~~l~~--------~~~h~~~V~sl~f 362 (713)
.|..||.++++... +......+..++|++++++|+++ +.++.|++||+++ ++.+.. +..+ ..+..+++
T Consensus 163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~ 240 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI 240 (333)
T ss_dssp EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE
T ss_pred eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE
Confidence 67777766554433 22233458899999999876655 4578999999963 332221 1122 46788999
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC------CeEEEEEcCCC-cEE-EEeCC----cEEEEecC
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------TVWDLAWHPIG-YLL-CSNDH----TTKFWCRN 426 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~------~V~~l~~spdg-~~l-aS~Dg----~v~iWd~~ 426 (713)
++ +++++++...++.|.+||.+ +. .+..+..+.. .+.+++|++|+ .+. ++.++ ...||.++
T Consensus 241 d~-~G~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 241 DS-DDNLYVAMYGQGRVLVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp BT-TCCEEEEEETTTEEEEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CC-CCCEEEEEcCCCEEEEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 98 67888888888999999983 33 3333332322 68999999987 333 34442 34555554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-16 Score=164.07 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=183.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCC------------------------CcEEEEEcCCCceeeeec-cCCCCeeEEEEecCC
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDG------------------------GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTD 240 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~D------------------------G~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg 240 (713)
-+.+.+|+++++|+++++...+ +.|.+||..+++++..+. .+......+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999988887776 479999999888776553 344578999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCe-eEEEE---------ccCCCceEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceEEEE
Q 005123 241 LKFCSCSDDTTVKVWDFARCQ-EERSL---------TGHGWDVKSVDWHP-TKSLLVSGG-KDSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 241 ~~Las~s~Dg~I~iwDl~~~~-~~~~l---------~~h~~~V~sl~~sp-dg~~L~sgs-~Dg~I~IwDl~t~~~~~~~ 308 (713)
+++++...++.|++||..... .+..+ ..+......|++++ +++++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 44554 23445789999999 788777776 689999999 557777766
Q ss_pred ccC----------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEee--cCCCCeEEEEEeCCCCCEEEEEE-
Q 005123 309 HGH----------KNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGS- 374 (713)
Q Consensus 309 ~~h----------~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs- 374 (713)
... ......|+++++ ++++++...++.|++||..+++.+..+. .+...+.+++|+| +.++++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 422 234889999998 6766777788999999999888888874 4556789999988 33333332
Q ss_pred ------CCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCC
Q 005123 375 ------LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRP 428 (713)
Q Consensus 375 ------~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~ 428 (713)
.+..|++||+.++.....+. ..+...+.+|+++++|.++++ .++.|++|+++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 34589999998776444332 356677999999999977666 7899999998643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-16 Score=168.59 Aligned_cols=248 Identities=9% Similarity=0.058 Sum_probs=173.5
Q ss_pred CCCEEEEEE------CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC----------CCcEEEEEcCCC
Q 005123 155 TGRRLITGS------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMN 218 (713)
Q Consensus 155 dg~~Latgs------~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~----------DG~I~vwdl~~~ 218 (713)
+++++++.. .|+.|++||..+++.+..+..+... .++|++|+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455666554 3679999999999988888776554 8999999999998863 578999999998
Q ss_pred ceeeeeccC------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCC-CEEEEE
Q 005123 219 NVKANKSAH------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLLVSG 288 (713)
Q Consensus 219 ~~~~~~~~~------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg-~~L~sg 288 (713)
+.+..+... ......++|++|+++|+++.. +++|.+||+.+++.+.. +... . ...+.+.+++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEE
Confidence 887766432 345778999999999998874 58999999999988776 4321 1 1112333322 233333
Q ss_pred eCCCc------------------------------------------------EEEEECCCCceE--EEEccC------C
Q 005123 289 GKDSL------------------------------------------------VKLWDAKSGREL--CSFHGH------K 312 (713)
Q Consensus 289 s~Dg~------------------------------------------------I~IwDl~t~~~~--~~~~~h------~ 312 (713)
+.||. |.++|+...... ..+... .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK 249 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence 44444 444444322111 111000 0
Q ss_pred ----CCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 313 ----NMVLCVKWNQNGNWVLTASK-----------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 313 ----~~I~si~fspdg~~Latgs~-----------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
.....++|+++++.++++.. ++.|.+||+.+++.+.++..+. +.+++|++ ++++|++++. +
T Consensus 250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~ 325 (361)
T 2oiz_A 250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-G 325 (361)
T ss_dssp TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-S
T ss_pred ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-C
Confidence 00112688999888887654 3489999999999999998877 99999999 6778887776 9
Q ss_pred cEEEEEcCCC--CceEEEecccCCCeEEEEEcCCCc
Q 005123 378 SIFHWLVGHE--TPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 378 ~I~Iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
.|.+||..+. +. +..+..+......++++|+|.
T Consensus 326 ~v~v~D~~t~~l~~-~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKL-LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEE-EEEETTSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCccee-eEEeccCCCCcEEEEecCCCC
Confidence 9999999887 43 333334567788999999974
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-16 Score=162.72 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=177.2
Q ss_pred CCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+.....+++|+++++ +++++..++.|++||..++ ...+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 4566788999999998 7778888999999999887 566777788899999999999887777778999999988775
Q ss_pred eeeecc----CCCCeeEEEEecCCCEEEEEEC-----------------CCeEEEEEcCCCeeEEEEccCCCceEEEEEc
Q 005123 221 KANKSA----HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 221 ~~~~~~----~~~~V~~l~fs~dg~~Las~s~-----------------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s 279 (713)
...... ....+.+++++++++++++.+. .+.|..+|.. ++ ...+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence 543322 1235678999999998887321 3456666654 33 34445566778999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCce---EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC
Q 005123 280 PTKSLLVSGGKDSLVKLWDAK-SGRE---LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~-t~~~---~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~ 355 (713)
++++.|++.+.++.|++||++ +++. ...+..+...+.+++++++|+++++. ++.|.+||.. ++.+..+..+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence 999988777778999999997 4544 23333345567789999999866655 8899999987 778888887777
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
+++++|...+++.|++++.+ .|..++.++.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 99999953267777777766 4444555443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-16 Score=184.05 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=180.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCC-----cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc-------
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg-----~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~------- 209 (713)
+|...+..++|||||++||.+..++ .|+|||+.+++.+.....+ ..+.+++|++|++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555789999999999999776543 8999999998876543322 23678999999999998887766
Q ss_pred ---------EEEEEcCCCce----eeeeccCCCCeeEEEEecCCCEEEEEEC-----CCeEEEEEcCC------Ce-eEE
Q 005123 210 ---------IKYWQNNMNNV----KANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFAR------CQ-EER 264 (713)
Q Consensus 210 ---------I~vwdl~~~~~----~~~~~~~~~~V~~l~fs~dg~~Las~s~-----Dg~I~iwDl~~------~~-~~~ 264 (713)
|++|++.++.. +.....+...+..+.|++|+++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988752 2222224556789999999999888765 56899999976 43 355
Q ss_pred EEccCCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCc--eEEEEccCCC--CeEEEEEcCCCCEEEEEECCCe-
Q 005123 265 SLTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQI- 335 (713)
Q Consensus 265 ~l~~h~~~V~sl~~spdg~~L~sgs~D----g~I~IwDl~t~~--~~~~~~~h~~--~I~si~fspdg~~Latgs~Dg~- 335 (713)
.+..+...+.. .|+++++.|+..+.+ ..|.+||+.++. ....+..+.. .+..++|++++.++++...|+.
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 56656655655 478888888777653 359999998764 2344444433 6888999877777788888874
Q ss_pred -EEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 336 -IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 336 -I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
|++||+.+++.+..+..+...|..+++++++..++++.+. .++|++||+.++.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6677887788778888777888999999844445555444 4689999997765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-16 Score=166.73 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=161.6
Q ss_pred CceEEEEEccCCCEEEEEECC---C--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC------------
Q 005123 145 CSINRVLWTPTGRRLITGSQS---G--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------------ 207 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~d---g--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D------------ 207 (713)
..+.+++|||||++||+++.+ + .|++||+.+++.......+ . +.+++|++|++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457899999999999988754 2 3888899887765554443 4 9999999999998877632
Q ss_pred ---------------CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC-------eEEEEEcCCCeeEEE
Q 005123 208 ---------------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-------TVKVWDFARCQEERS 265 (713)
Q Consensus 208 ---------------G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-------~I~iwDl~~~~~~~~ 265 (713)
..|.+||+.+++.+..+.. . .+..++|++|+ ++++++.+. ...||.+.+++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 5789999998876344444 3 88999999999 777776542 334444435443 33
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEccCCCCeEE-EEEcCCCCEEEEEECCCeE
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLC-VKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~D--------g~I~IwDl~t~~~~~~~~~h~~~I~s-i~fspdg~~Latgs~Dg~I 336 (713)
+..+ ..+.++ +++|++|++++.+ ..|.+|| +++....+..+...+.. +.|+ |+ ++++++.++.+
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 4334 455544 8999988887754 3688888 55544444555677886 9999 88 88899999999
Q ss_pred EEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE-EEEEcC
Q 005123 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI-FHWLVG 385 (713)
Q Consensus 337 ~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I-~Iwd~~ 385 (713)
+|| +.+++... +..+...|.+++|++ .++++++.++.. .||.++
T Consensus 286 ~l~-~~~g~~~~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKP-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEE-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEE-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999 87665543 444577899999987 677788777765 778776
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-16 Score=158.87 Aligned_cols=241 Identities=9% Similarity=-0.037 Sum_probs=175.2
Q ss_pred ceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
...++++++++++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||.+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999666 446788999999766543322223345788999999988665555 889999998776544332
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
......+.+++++++++++++...++.|.+||..+.............+.+|+++++++++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999998777777788999998765443332223334688999999999777777788999999887665
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
..........+.+|+++++|+++++...++.|.+||............+...+.++++++ +++++++...++.|++|++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcC
Confidence 443333346789999999997777777788999999976544332223346789999998 6788889889999999998
Q ss_pred CCCC
Q 005123 385 GHET 388 (713)
Q Consensus 385 ~~~~ 388 (713)
....
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-15 Score=155.72 Aligned_cols=235 Identities=9% Similarity=0.018 Sum_probs=171.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwd 214 (713)
.+..+...+.+++|++++++++++..++.|++||..+++.......+...+.+++|+++++++++...+ +.|.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 345666778999999999987888889999999999887766555567889999999999988877666 6899999
Q ss_pred cCCCceeeeec--cCCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 215 NNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 215 l~~~~~~~~~~--~~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
.+++.....+. .....+.+++++++++++++... ++.|..||..+++... +......+..++|+++++.|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence 98876553332 24457899999999987776654 3566677765544433 222334688999999998665
Q ss_pred EE-eCCCcEEEEECCC-CceEEEE-----ccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC--
Q 005123 287 SG-GKDSLVKLWDAKS-GRELCSF-----HGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-- 355 (713)
Q Consensus 287 sg-s~Dg~I~IwDl~t-~~~~~~~-----~~h--~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-- 355 (713)
++ +.++.|.+||+++ ++.+..+ ... ...+..++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~ 276 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE 276 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcc
Confidence 54 5578999999964 3333211 111 146788999999998888878899999998 4666766665443
Q ss_pred ----CeEEEEEeCCCCCEEEEEECC
Q 005123 356 ----DVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 356 ----~V~sl~fsp~~~~~lasgs~D 376 (713)
.+.+++|++ ++..|+.++.+
T Consensus 277 g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 GHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp TCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred ccccCcceEEECC-CCCEEEEEeCc
Confidence 689999998 45445444443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-14 Score=145.02 Aligned_cols=279 Identities=7% Similarity=-0.009 Sum_probs=198.8
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.+......+.+++++++|+++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|.+||..
T Consensus 14 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 344556789999999999977777678999999988 554432 22234679999999999877777667899999987
Q ss_pred Cceeee-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEE-EEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 218 NNVKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 218 ~~~~~~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~-~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
++.... .......+.++++.++++++++...++.|..||.. ++... .+......+.+++++++++++++...++.|.
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 554322 22234678999999999888777778899999987 44432 2333456789999999999666666678899
Q ss_pred EEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCCCCeEEEEEeCCCCCEEEEE
Q 005123 296 LWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 296 IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
+||. +++.... .......+.+++++++++++++...++.|.+||. +++.... +......+.++++++ +++++++.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEec
Confidence 9998 5554432 2234457899999999987776666778999998 4443332 333456789999998 67777777
Q ss_pred ECCCcEEEEEcCCCCceEEE-ecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 374 SLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 374 s~DG~I~Iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
..++.|.+||.. +. .... .......+.++++++++.+.++..+.|..++.
T Consensus 248 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITND-NT-IQEYQLQTENAEPHGITFGKDGSVWFALKCKIGKLNL 298 (300)
T ss_dssp TTTTEEEEECTT-SC-EEEEECCSTTCCCCCEEECTTSCEEEECSSEEEEEEE
T ss_pred cCCCeEEEECCC-Cc-EEEEECCccCCccceeEeCCCCCEEEEccCceEEeCC
Confidence 677899999983 32 2222 22234678999999999877764334544443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=172.04 Aligned_cols=229 Identities=8% Similarity=0.081 Sum_probs=162.0
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEE-------------------EEEccCCCEEEEE-----
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS-------------------MVWSHNDNWMVSG----- 204 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~s-------------------l~~spdg~~L~sg----- 204 (713)
++.|++||++|++++.++.|++||+.+++.......+...... ++|+++++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988876666655443333 3567777766644
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec-CCCEEEEEECC------CeEEEEEcCCCeeEEEEccC--CCceEE
Q 005123 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDD------TTVKVWDFARCQEERSLTGH--GWDVKS 275 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~-dg~~Las~s~D------g~I~iwDl~~~~~~~~l~~h--~~~V~s 275 (713)
..+..|.+||+.+++..... .+...+..+.|++ +++.|+.++.+ ..|.+||+..++.. .+..+ ...+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTH 242 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEE
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccc
Confidence 35678999999988765544 4567889999999 78877776653 36889998765433 33322 235888
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEccCCCCeEEEEEcC-CCCEEEEEE----------------CC
Q 005123 276 VDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTAS----------------KD 333 (713)
Q Consensus 276 l~~spdg~~L~sgs~D-----g~I~IwDl~t~~~~~~~~~h~~~I~si~fsp-dg~~Latgs----------------~D 333 (713)
++|++++++|++++.+ +.|++||+.+++...... ... .. +.|++ ||++|++++ .+
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999999988777654 449999999887544332 222 33 89999 999888765 34
Q ss_pred CeEEEEECCCCeeEEEeecCCC-----------CeEEEEEeCCCCCEEEEEE-CCCcEEEEEc
Q 005123 334 QIIKLYDIRAMKELESFRGHRK-----------DVTALAWHPFHEEYFVSGS-LDGSIFHWLV 384 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~~-----------~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~ 384 (713)
..|++||+.+++.. .+..+.. .+..++|++ +++.|+.++ .++...||.+
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence 78999999887653 3433443 256788999 566666555 4565555544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-15 Score=154.84 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=173.7
Q ss_pred CceEEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 176 FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 176 ~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
+..+..+..+.....+++|+++++ +++++..++.|.+||..++ ...+..+...+.+++++++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 334455656677889999999998 6778888899999999887 4555566778999999999998877777789999
Q ss_pred EEcCCCeeEEEEccC----CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEccCCC
Q 005123 255 WDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKN 313 (713)
Q Consensus 255 wDl~~~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~-----------------Dg~I~IwDl~t~~~~~~~~~h~~ 313 (713)
||..+++........ ...+.+++++++|+++++.+. .+.|..||.. ++ +..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 999777654433221 235678999999998887321 3456666655 43 444455666
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECC-CCee---EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKE---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~~---l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
....++|++++++|++.+.++.|++||+. +++. ...+..+...+..+++++ +++++++. ++.|.+||.+ +.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~- 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GD- 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SC-
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CC-
Confidence 78999999999999777778999999997 4543 333333455678899998 67766666 7899999985 33
Q ss_pred eEEEecccCCCeEEEEE-cCCCcEE-EEeCCcEEEEecCCCCC
Q 005123 390 QVEIHNVHDNTVWDLAW-HPIGYLL-CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~~-spdg~~l-aS~Dg~v~iWd~~~~~~ 430 (713)
.+..+..+.. +++++| .+++..| ++..+ .+|.++....
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~--~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVST--EFWSIETNVR 287 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTSCEEEEEETT--EEEEEECSCC
T ss_pred EEEEEECCCC-ceeEEEECCCCCEEEEEcCC--eEEEEEcccc
Confidence 4444555566 999999 5777544 44444 4555544433
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-15 Score=152.88 Aligned_cols=213 Identities=9% Similarity=0.032 Sum_probs=174.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccC-CCCee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVR 232 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~-~~~V~ 232 (713)
.+++|++++.|+.|++||.++++.+.++..+. ..+.++.++++|++|+ +.++.|..||. +++.+..+... ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998776 5789999999999888 45788999999 78888877764 35788
Q ss_pred EEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEcc------CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 233 DLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~------h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
++.+.+++++|++.+. ++.|..+|. +++.+..+.. +......+++.+++++|++...++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 778888885 6666665542 11245567788999999999999999999998 9999
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC------CCeEEEEEeCCCCCEEEEEE
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR------KDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~------~~V~sl~fsp~~~~~lasgs 374 (713)
.++... ....++.+.++|++|++++.++.|..+|..+++.+.++.... ..+..++..+ +++++++..
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEec
Confidence 888754 456678888999999999888899999999999999886432 2367788877 677776664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-15 Score=155.58 Aligned_cols=254 Identities=8% Similarity=0.013 Sum_probs=185.1
Q ss_pred CCcEEEEeCCCCceEEEEe------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec
Q 005123 165 SGEFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~ 238 (713)
++.|.+||.++++....+. ........+++. +++++++...++.|.+||..+++.+..+. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 7899999999988765431 122456778774 44555566667999999999999887774 356789999988
Q ss_pred CCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEccC
Q 005123 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFHGH 311 (713)
Q Consensus 239 dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs--~Dg~I~IwDl~t~~~~~~~~~h 311 (713)
+++.+++...++.|.+||..+++.+..+.... .....+++ +++.|+++. .++.|.+||+++++.+.++..
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~- 170 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI- 170 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-
Confidence 88544444389999999999998877665332 15667777 355555555 488999999999988877764
Q ss_pred CCCeEEEEEcCCCCEEEEEECC----------CeEEEEECCCCeeEEEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEE
Q 005123 312 KNMVLCVKWNQNGNWVLTASKD----------QIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIF 380 (713)
Q Consensus 312 ~~~I~si~fspdg~~Latgs~D----------g~I~IwDl~t~~~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~ 380 (713)
......++++++|++++++..+ +.|.+||..+++.+..+... ......++|++ ++++|+++.. .|.
T Consensus 171 g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 171 GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIW 247 (328)
T ss_dssp SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEE
T ss_pred CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEE
Confidence 3446789999999877766554 78999999999887777543 34689999999 5666666544 899
Q ss_pred EEEcCCCCceEE-EecccCCCeEEEEEcC-CCcEEEEe------CCcEEEEecC
Q 005123 381 HWLVGHETPQVE-IHNVHDNTVWDLAWHP-IGYLLCSN------DHTTKFWCRN 426 (713)
Q Consensus 381 Iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-dg~~laS~------Dg~v~iWd~~ 426 (713)
+||..+.+.... +..........+++++ ++.+.++. ++.|.+|+.+
T Consensus 248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999977654211 1111246789999998 56666554 6889999875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=154.64 Aligned_cols=239 Identities=10% Similarity=-0.019 Sum_probs=178.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~ 224 (713)
....+++. +++++++...++.|.+||..+++.+.++. .......++++++++ |+++. .++.|.+||..++++...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEE
Confidence 45667663 34445555567899999999999988885 356789999988884 55554 8899999999999877665
Q ss_pred ccCC-----CCeeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC------
Q 005123 225 SAHK-----ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD------ 291 (713)
Q Consensus 225 ~~~~-----~~V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D------ 291 (713)
.... .....+++ ++..|++++ .+++|.+||+++++.+..+.. ......+++++++++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcc
Confidence 4322 15567777 455555555 488999999999988877764 3456789999999877766554
Q ss_pred ----CcEEEEECCCCceEEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE--eecCCCCeEEEEEeC
Q 005123 292 ----SLVKLWDAKSGRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHP 364 (713)
Q Consensus 292 ----g~I~IwDl~t~~~~~~~~~h-~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp 364 (713)
+.|.+||.++++.+..+... ......++|++++++|+++.. .|.+||..+++.... +.........+++++
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 78999999998877666532 346899999999999988765 899999988775321 221246789999998
Q ss_pred CCCCEEEEE----ECCCcEEEEEcCCCCceEEE
Q 005123 365 FHEEYFVSG----SLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 365 ~~~~~lasg----s~DG~I~Iwd~~~~~~~~~~ 393 (713)
++++++++. ..++.|.+||.+ ++.+..+
T Consensus 277 ~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 277 NNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp TTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 677788877 678899999986 5433333
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=184.88 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=170.1
Q ss_pred CCCCceEEEEEccCCCEEEEEE-----CCCcEEEEeCCCCceEEEEeccCCCE--EEEEEccCCCEEEEEeCCCc-----
Q 005123 142 KNRCSINRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDGGA----- 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs-----~dg~V~Iwd~~t~~~~~~l~~h~~~V--~sl~~spdg~~L~sgs~DG~----- 209 (713)
+|...+.+++|||||++||.+. .+..|+|||+.+++.+. ..+...+ .+++|++||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 5666899999999999999543 34689999999987641 1122222 68999999999999988776
Q ss_pred --------EEEEEcCCCc----eeeeeccCCCCeeEEEEecCCCEEEEEECCC----eEEEEEcCCCeeEEEEccCCCce
Q 005123 210 --------IKYWQNNMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQEERSLTGHGWDV 273 (713)
Q Consensus 210 --------I~vwdl~~~~----~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg----~I~iwDl~~~~~~~~l~~h~~~V 273 (713)
|++|++.++. ++.....+...+.++.|++|+++|+.++.++ .|++||..+++ ...+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998875 2333334456789999999999998877665 67777765554 34444455566
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCCCce---EEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCe
Q 005123 274 KSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRE---LCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMK 345 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs---~Dg~I~IwDl~t~~~---~~~~~~h-~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~ 345 (713)
....| +++++++++. .++.|.+||+++++. ...+..+ ...+..++|+ ++.++++...|+..+||.+. +++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 66667 4555444443 257899999987653 3333333 4568888998 67788888899988887654 455
Q ss_pred eEEEeecC-CCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 346 ELESFRGH-RKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
.+..+..+ ...|..+++++++..++++.+. .++|++||+.++.
T Consensus 353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66666655 5667888899844444444443 4679999997765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-14 Score=158.60 Aligned_cols=281 Identities=12% Similarity=0.111 Sum_probs=203.6
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC--CCceEEEEeccCCCEEEEEEc----cCCCEEEEEeC-CCcEEEEEcCC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWS----HNDNWMVSGDD-GGAIKYWQNNM 217 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~--t~~~~~~l~~h~~~V~sl~~s----pdg~~L~sgs~-DG~I~vwdl~~ 217 (713)
..+..++|++||++|++++.|+.|.+||+. +.+.+..+... .....++|+ +||+++++++. ++.|.|+|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 357799999999999999999999999995 78888777753 346799999 69999887765 59999999999
Q ss_pred CceeeeeccC-----------CCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeE--EEEccCCCceEEEEEcCCCC
Q 005123 218 NNVKANKSAH-----------KESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 218 ~~~~~~~~~~-----------~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~--~~l~~h~~~V~sl~~spdg~ 283 (713)
.+.+..+... ...+..+.+++++..++ ....+|.|.++|..+.+.+ ..+ .......++.|+++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR 354 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC
Confidence 8887765422 12677888888766544 4455799999999775432 222 2345677899999999
Q ss_pred EEEEEe-CCCcEEEEECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEE-EEE-CCCeEEEEECCC-------CeeEE
Q 005123 284 LLVSGG-KDSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVL-TAS-KDQIIKLYDIRA-------MKELE 348 (713)
Q Consensus 284 ~L~sgs-~Dg~I~IwDl~t~~~~~~~~~-----h~~~I~si~fspdg~~La-tgs-~Dg~I~IwDl~t-------~~~l~ 348 (713)
+|++++ .+++|.++|+++++.+..+.. |.+....+ +++++..++ ++. .+++|.++|..+ ++.+.
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 887766 578899999999988776653 22112122 577755554 443 468999999988 77888
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEEC-------CCcEEEEEcCCC-----CceEEEecc--------cCCCeEEEEEcC
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSL-------DGSIFHWLVGHE-----TPQVEIHNV--------HDNTVWDLAWHP 408 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~-------DG~I~Iwd~~~~-----~~~~~~~~~--------h~~~V~~l~~sp 408 (713)
++......-..++.+| ++++|.+... ..+|.|+|+.+. ...+..+.. ....+..+.|++
T Consensus 434 ~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 434 SFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 8876554445678899 6666666552 359999999766 333233321 235789999999
Q ss_pred CCcEE-EE-e-----CCcEEEEecCCCC
Q 005123 409 IGYLL-CS-N-----DHTTKFWCRNRPG 429 (713)
Q Consensus 409 dg~~l-aS-~-----Dg~v~iWd~~~~~ 429 (713)
+|..+ +| . ++.|.|+|.....
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 99544 34 2 7999999875543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-15 Score=151.00 Aligned_cols=238 Identities=10% Similarity=-0.041 Sum_probs=170.7
Q ss_pred CEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 188 AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 188 ~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
...++++++++++++ +...++.|.+||..+.............+.+++++++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 778999999998766 446788999998766554333233345788999999988655555 889999998765433222
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
......+.+++++++++++++...++.|.+||..+.............+.+++++++++++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 22336789999999999777777788999998766544332223334678999999999777766788999999987665
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
......+...+.+|++++ ++.++++...++.|.+||...... ......+...+.++++++++.++++ .++.|++|+
T Consensus 184 ~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp EECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 443333446789999998 668888877888999999865433 2222233467899999999977665 789999998
Q ss_pred cCCC
Q 005123 425 RNRP 428 (713)
Q Consensus 425 ~~~~ 428 (713)
+...
T Consensus 262 ~~~~ 265 (270)
T 1rwi_B 262 SLEH 265 (270)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 7544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-15 Score=175.54 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=180.9
Q ss_pred cCCCEEEEEECCCc---EEEE--eCC---CCceEEEEe------ccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEE
Q 005123 154 PTGRRLITGSQSGE---FTLW--NGQ---SFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQ 214 (713)
Q Consensus 154 pdg~~Latgs~dg~---V~Iw--d~~---t~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vwd 214 (713)
+||++++....++. -.|| +.. .++....+. +|...+..++|||||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888887665432 3444 443 333333221 223468899999999999876543 3599999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCe--------------EEEEEcCCCee--EEEEcc--CCCceEEE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT--------------VKVWDFARCQE--ERSLTG--HGWDVKSV 276 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~--------------I~iwDl~~~~~--~~~l~~--h~~~V~sl 276 (713)
+++++.+... .....+..++|++| +.|+.++.|+. |++|++.+... ...+.. +...+.++
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999875532 22223467899999 99988887654 89999977652 223332 23358899
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEECCCC--ceEEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCC-
Q 005123 277 DWHPTKSLLVSGGKDS-----LVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDIRAM- 344 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg-----~I~IwDl~t~--~~~~~~~~h~~~I~si~fspdg~~Latgs~D----g~I~IwDl~t~- 344 (713)
.|++||++|+..+.++ .|++||+.++ +....+..+...+.... +++|+.|+..+.+ +.|++||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999988877544 7999999877 41445544444455543 4889988887764 45999999874
Q ss_pred -eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc-cCCCeEEEEEcCCCcEEE----E--e
Q 005123 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLC----S--N 416 (713)
Q Consensus 345 -~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~la----S--~ 416 (713)
+....+..+...+..++|+ ++.++++...|+..+||.++........+.. +.+.|..+++++++..++ + .
T Consensus 353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3334444455556778887 5678889999998888766533333333333 356788999999874332 2 5
Q ss_pred CCcEEEEecCCC
Q 005123 417 DHTTKFWCRNRP 428 (713)
Q Consensus 417 Dg~v~iWd~~~~ 428 (713)
.++|.+||++..
T Consensus 431 P~~i~~~d~~tg 442 (741)
T 1yr2_A 431 PATVLALDPATA 442 (741)
T ss_dssp EEEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 578999988653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=156.47 Aligned_cols=212 Identities=15% Similarity=0.182 Sum_probs=151.9
Q ss_pred EEEEccCCCEEEEEEC----------CCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCCCEEEEEeC--CCcE
Q 005123 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWMVSGDD--GGAI 210 (713)
Q Consensus 149 ~v~~spdg~~Latgs~----------dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg~~L~sgs~--DG~I 210 (713)
.++|++|+++|++++. ++.|.+||..+.+.+..+... ......++|++||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7999999999999873 567999999999988887643 245678999999999998874 5899
Q ss_pred EEEEcCCCceeee-eccCCCCeeEEEEecCC-CEEEEEEC----------------------------------------
Q 005123 211 KYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSD---------------------------------------- 248 (713)
Q Consensus 211 ~vwdl~~~~~~~~-~~~~~~~V~~l~fs~dg-~~Las~s~---------------------------------------- 248 (713)
.+||+.+++.+.. +.... ...+.+.+++ ..+++.+.
T Consensus 134 ~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK 211 (361)
T ss_dssp EEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred EEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence 9999999987766 43211 1112222222 22333333
Q ss_pred --------CCeEEEEEcCCCee--EEEEccCC----------CceEEEEEcCCCCEEEEEeC-----------CCcEEEE
Q 005123 249 --------DTTVKVWDFARCQE--ERSLTGHG----------WDVKSVDWHPTKSLLVSGGK-----------DSLVKLW 297 (713)
Q Consensus 249 --------Dg~I~iwDl~~~~~--~~~l~~h~----------~~V~sl~~spdg~~L~sgs~-----------Dg~I~Iw 297 (713)
++.|.+||+..... +..+.... .....++|+++++.++++.. ++.|.+|
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 34444455432211 11111000 01112788999888777653 3479999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eeEEEeecCCCCeEEEEEeCC
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--~~l~~~~~h~~~V~sl~fsp~ 365 (713)
|+++++.+.++..+. +.+++|++||++|++++. +.|.|||..++ +.+.++..+......++++|+
T Consensus 292 D~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp ETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred ECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 999999999988766 999999999999998887 99999999999 999888777888899999994
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-13 Score=156.21 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=197.6
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccCCCCe
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESV 231 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~--~~~~~~~~~~~~~~V 231 (713)
+.+.++++...++.|.+||..+++.+.++.. ...+..+.|++|+++|++++.|+.|.+||+. +.+.+..+.. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 3345566777789999999999999988874 3467799999999999999999999999996 7777766654 3456
Q ss_pred eEEEEe----cCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccC-----------CCceEEEEEcCCCCEE-EEEeCCCcE
Q 005123 232 RDLSFC----RTDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLL-VSGGKDSLV 294 (713)
Q Consensus 232 ~~l~fs----~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h-----------~~~V~sl~~spdg~~L-~sgs~Dg~I 294 (713)
..++|+ +|++++++++. +++|.|+|..+.+.+..+... ...+..+..++++..+ +....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 899999 69998887665 589999999998888776521 2267888888876654 444567999
Q ss_pred EEEECCCCceEEEE-ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec-----CCCCeEEEEEeCCCC
Q 005123 295 KLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG-----HRKDVTALAWHPFHE 367 (713)
Q Consensus 295 ~IwDl~t~~~~~~~-~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~-----h~~~V~sl~fsp~~~ 367 (713)
.++|..+.+.+... ........++.|++++++|++++ .++.|.++|+++++.+..+.. |.+.-..+ ++++.+
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g 401 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFG 401 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCC
Confidence 99999876433221 12345677899999999988766 578999999999998776654 32222222 577445
Q ss_pred CEEEEEE-CCCcEEEEEcCCC------CceEEEecccCCCeEEEEEcCCCcEEEE-e--------CCcEEEEecCCC
Q 005123 368 EYFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCS-N--------DHTTKFWCRNRP 428 (713)
Q Consensus 368 ~~lasgs-~DG~I~Iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~laS-~--------Dg~v~iWd~~~~ 428 (713)
.++++.. .+++|.++|.... .+.+..+......-..|..++++..+.. . .++|.|+|++..
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 5556554 4689999999762 2334444333333345778999976643 2 359999999765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-14 Score=146.73 Aligned_cols=240 Identities=10% Similarity=0.093 Sum_probs=173.6
Q ss_pred CCCceEEEEEccCCCEEEE-------EECCCcEEEEeCCCCceEEEEe----ccCCCEEEEEEccC-CCEEEEEeCCCcE
Q 005123 143 NRCSINRVLWTPTGRRLIT-------GSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHN-DNWMVSGDDGGAI 210 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Lat-------gs~dg~V~Iwd~~t~~~~~~l~----~h~~~V~sl~~spd-g~~L~sgs~DG~I 210 (713)
.-....+++|+++++++++ +..++.|++||..+++...... .+...+.+++++++ +++++ ++.++.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCE
Confidence 3446789999999988777 5778899999988877653322 24567999999998 55444 4445579
Q ss_pred EEEEcCCCceeee-ecc----CCCCeeEEEEecCCCEEEEEECC---------------CeEEEEEcCCCeeEEEEccCC
Q 005123 211 KYWQNNMNNVKAN-KSA----HKESVRDLSFCRTDLKFCSCSDD---------------TTVKVWDFARCQEERSLTGHG 270 (713)
Q Consensus 211 ~vwdl~~~~~~~~-~~~----~~~~V~~l~fs~dg~~Las~s~D---------------g~I~iwDl~~~~~~~~l~~h~ 270 (713)
.+||.+ ++.... ... ....+.+++++++++++++...+ +.|..||.. ++.... ..+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCC
Confidence 999988 665433 221 12458899999999887776654 567777765 443332 2233
Q ss_pred CceEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCce-----EEEEccCC-CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 271 WDVKSVDWH----PTKSLLVSG-GKDSLVKLWDAK-SGRE-----LCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 271 ~~V~sl~~s----pdg~~L~sg-s~Dg~I~IwDl~-t~~~-----~~~~~~h~-~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.....++|+ ++++.|+++ ..++.|.+||++ +++. ...+..+. ..+..++++++|+++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 998766555 467899999986 4432 22233333 56889999999998888888899999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCC
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~ 387 (713)
||.++++.+..+..+...+.+++|++ +++ ++++...++.|..|++...
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 99987887777777778899999998 566 5666666789999998653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-14 Score=145.80 Aligned_cols=229 Identities=11% Similarity=0.031 Sum_probs=181.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-CceE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVK 274 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-~~V~ 274 (713)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+++++++|+ +.++.|+.||. +++.+..+.... ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46889999999999999999999998887765 5789999999999888 45788999998 888888887643 5788
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEcc------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 275 SVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 275 sl~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~~~~------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
++.+.+++++|++.+. ++.|..+|. +++.+.++.. +......+++.++|++|++.+.++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 778888885 6787776642 11235566788999999999999999999998 9999
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEeccc-----CCCeEEEEEcCCCcEEEE-eCC---
Q 005123 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-----DNTVWDLAWHPIGYLLCS-NDH--- 418 (713)
Q Consensus 348 ~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~laS-~Dg--- 418 (713)
.++... ..+.++.+.+ ++++|++++.+++|..||..+++.+.++.... -..+..++..+++.++++ .++
T Consensus 159 w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT
T ss_pred EEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccc
Confidence 998865 3456677777 78899988888899999998777665554211 123788889999977765 433
Q ss_pred ------cEEEEecCCCCCcc
Q 005123 419 ------TTKFWCRNRPGDTA 432 (713)
Q Consensus 419 ------~v~iWd~~~~~~~~ 432 (713)
..++++++..++..
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEE
T ss_pred cccccCCceEEEECCCCCEE
Confidence 44688887766653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-14 Score=167.36 Aligned_cols=242 Identities=10% Similarity=-0.046 Sum_probs=168.2
Q ss_pred CCCceEEEEEccCCCEEEEEECC-----CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc--------
Q 005123 143 NRCSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA-------- 209 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~d-----g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~-------- 209 (713)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|++| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999987654 35999999998875432 12222357899999 99988876654
Q ss_pred ------EEEEEcCCCce--eeeec--cCCCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCCe-e-EEEEccCCCc
Q 005123 210 ------IKYWQNNMNNV--KANKS--AHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQ-E-ERSLTGHGWD 272 (713)
Q Consensus 210 ------I~vwdl~~~~~--~~~~~--~~~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~~-~-~~~l~~h~~~ 272 (713)
|++|++.++.. ...+. .+...+.++.|++||++|+..+.++ .|++||+.++. . ...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 88999877652 22222 2333588999999999988877543 89999998762 2 4455555555
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCe
Q 005123 273 VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMK 345 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs~D----g~I~IwDl~t~--~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~-t~~ 345 (713)
+.... +++++.|+..+.+ +.|.+||+.++ +....+..+...+.+++|+ ++.++++...|+..+||.++ +++
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 55553 4788888887764 45999999875 3333444455557778887 56677788889887777554 455
Q ss_pred eEEEeecC-CCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCC
Q 005123 346 ELESFRGH-RKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~~~~~h-~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~ 388 (713)
.+..+..+ ...|..+++++++..++++.+. .++|++||+.++.
T Consensus 397 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66666543 5678899999954455555443 4689999997654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-12 Score=135.13 Aligned_cols=237 Identities=6% Similarity=-0.053 Sum_probs=171.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+...+.+++++++++++++...++.|.+||.. ++. ..+. .....+.++++.++++++++...++.|.+||. +++
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 345779999999999977777768899999976 333 2232 24567999999999988887777889999998 554
Q ss_pred eeee-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 220 VKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 220 ~~~~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.... .......+.++++.++++.+++...++.|.+||. +++.... +......+.+++++++++++++...++.|.+|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 4332 2234567899999999988777777889999998 5554432 33345678899999999877776667899999
Q ss_pred ECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEE-eecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 298 DAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 298 Dl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~-~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
|. +++.... +......+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++ + +++++++.+
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~- 284 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-D-GETIWFAME- 284 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-c-CCCEEEEec-
Confidence 99 6654332 23345678999999999866665577899999984 543221 2344567899999 6 677766655
Q ss_pred CCcEEEEEcCCC
Q 005123 376 DGSIFHWLVGHE 387 (713)
Q Consensus 376 DG~I~Iwd~~~~ 387 (713)
.+.|..++.++.
T Consensus 285 ~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEEEC--
T ss_pred CCcEEEEEcCcc
Confidence 567777777543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-12 Score=140.73 Aligned_cols=270 Identities=9% Similarity=-0.073 Sum_probs=184.5
Q ss_pred EccCCCEEEEEEC--CC---cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcC
Q 005123 152 WTPTGRRLITGSQ--SG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNN 216 (713)
Q Consensus 152 ~spdg~~Latgs~--dg---~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~ 216 (713)
..+++++++++.. .. .|.+||..+++.+..+...... .+++++|+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777776653 22 7899999999988887754444 999999999999886 36789999999
Q ss_pred CCceeeeeccC-------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCC-CEE
Q 005123 217 MNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLL 285 (713)
Q Consensus 217 ~~~~~~~~~~~-------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg-~~L 285 (713)
+.+.+..+... ...-..+.|++|+++|++++. ++.|.++| .+++.+.. +... . |+.+.+++ +.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceE
Confidence 88877665432 133568999999999998874 57899999 99888777 5422 2 24455544 456
Q ss_pred EEEeCCCcEEEEECCCCceEEEEc-----cCCCC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCe--eEEEeecC----
Q 005123 286 VSGGKDSLVKLWDAKSGRELCSFH-----GHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH---- 353 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~-I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--~l~~~~~h---- 353 (713)
++.+.||.+.+||. +++.+.... ..... .....+.+++..++..+.++.|.+.|+.+.. .+..+...
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 77778999999999 877663322 11111 2334566766665555578899999997542 22333211
Q ss_pred ------CCCeEEEEEeCCCCCEEEEEE---------CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEE-E-
Q 005123 354 ------RKDVTALAWHPFHEEYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLC-S- 415 (713)
Q Consensus 354 ------~~~V~sl~fsp~~~~~lasgs---------~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la-S- 415 (713)
......+++++++++++++.. .++.|.++|+.+.+....+.. ....++++|++|+. ++. +
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEc
Confidence 122344788884444444332 135799999987765555543 34689999999997 453 3
Q ss_pred -eCCcEEEEecCCCCCc
Q 005123 416 -NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~~ 431 (713)
.++.|.|||....+..
T Consensus 338 ~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 338 AGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCCeEEEEECCCCCEE
Confidence 4899999998665543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-13 Score=143.86 Aligned_cols=275 Identities=9% Similarity=0.004 Sum_probs=192.5
Q ss_pred EEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEc
Q 005123 151 LWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQN 215 (713)
Q Consensus 151 ~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl 215 (713)
...|++++|++... ++.|.++|..+++.+..+...... . +++++|+++|++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34678888888876 679999999999999988865555 4 99999999988775 3678999999
Q ss_pred CCCceeeeeccC-------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 216 NMNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 216 ~~~~~~~~~~~~-------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
.+.+.+..+... ...-..+.|++|+++|+++.. ++.|.++|+.+++.+.++.... + ...+....+.++
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFF 193 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeE
Confidence 999988776432 125667999999999998874 6899999999999988885322 1 222333456777
Q ss_pred EEeCCCcEEEEECCC-CceEEEEccC----CCCe-EEEEEc-CCCCEEEEEECCCeEEEEECCCCe--eEEEeec-----
Q 005123 287 SGGKDSLVKLWDAKS-GRELCSFHGH----KNMV-LCVKWN-QNGNWVLTASKDQIIKLYDIRAMK--ELESFRG----- 352 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t-~~~~~~~~~h----~~~I-~si~fs-pdg~~Latgs~Dg~I~IwDl~t~~--~l~~~~~----- 352 (713)
+.+.||++.++++.+ ++.+.+.... ...+ ....|. ++|++++ .+.++.|+++|+.+.. .+..+..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence 888899999999976 5543322111 1122 224564 5775444 5668999999997653 3332220
Q ss_pred -----CCCCeEEEEEeCCCCCEEEEEEC---------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-E-EEE-
Q 005123 353 -----HRKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-L-LCS- 415 (713)
Q Consensus 353 -----h~~~V~sl~fsp~~~~~lasgs~---------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~-laS- 415 (713)
....+..++++++.++++++... ...|.++|+.+.+.+..+..+ ..++.|++++|+. + +++
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEE
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEc
Confidence 01233457778844444444331 247999999888876666654 3789999999985 3 444
Q ss_pred -eCCcEEEEecCCCCCccc
Q 005123 416 -NDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 416 -~Dg~v~iWd~~~~~~~~~ 433 (713)
.++.|.|+|....+...+
T Consensus 351 ~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 351 TGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TTTTEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEECCCCcEEEE
Confidence 589999999876554433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-12 Score=135.63 Aligned_cols=232 Identities=9% Similarity=0.111 Sum_probs=161.6
Q ss_pred CCCCCceEEEEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+..-..+..|++++.. +++...++.|+.||..+++.. .+ .....+.+++++++++++++ . ++.|.+||.++++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 344455678999996554 555556889999999887653 33 24578999999999995554 4 5679999998876
Q ss_pred eeeeecc----CCCCeeEEEEecCCCEEEEEECC---------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 220 VKANKSA----HKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 220 ~~~~~~~----~~~~V~~l~fs~dg~~Las~s~D---------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
....... ....+++++++++++++++...+ ....||.+........+.......+.++|+++++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 5443322 22458899999999977655322 2345555443222222333445678999999998765
Q ss_pred E-EeCCCcEEEEEC--CCCceE-----EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 287 S-GGKDSLVKLWDA--KSGREL-----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 287 s-gs~Dg~I~IwDl--~t~~~~-----~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+ .+.++.|.+||+ .+++.. ..+.........++++++|+++++...++.|.+||.++++.+..+..+...++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 5 455788999987 455432 22222345688999999999888888888999999999999999988878899
Q ss_pred EEEEe-CCCCCEEEEEECC
Q 005123 359 ALAWH-PFHEEYFVSGSLD 376 (713)
Q Consensus 359 sl~fs-p~~~~~lasgs~D 376 (713)
+++|. ++.+.++++...+
T Consensus 245 ~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEESGGGCEEEEEEBCT
T ss_pred EEEEeCCCCCEEEEEcCCc
Confidence 99998 6444555555443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=134.75 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=168.0
Q ss_pred ccCCCEEEEEEccCCCEEEE-------EeCCCcEEEEEcCCCceeeeec----cCCCCeeEEEEecC-CCEEEEEECCCe
Q 005123 184 AHDHAIRSMVWSHNDNWMVS-------GDDGGAIKYWQNNMNNVKANKS----AHKESVRDLSFCRT-DLKFCSCSDDTT 251 (713)
Q Consensus 184 ~h~~~V~sl~~spdg~~L~s-------gs~DG~I~vwdl~~~~~~~~~~----~~~~~V~~l~fs~d-g~~Las~s~Dg~ 251 (713)
..-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++ |++++.++.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCC
Confidence 33456789999998888777 5678899999988777643322 14467899999998 55 444444558
Q ss_pred EEEEEcCCCeeEEE-Ecc----CCCceEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceEEEEccC
Q 005123 252 VKVWDFARCQEERS-LTG----HGWDVKSVDWHPTKSLLVSGGKD---------------SLVKLWDAKSGRELCSFHGH 311 (713)
Q Consensus 252 I~iwDl~~~~~~~~-l~~----h~~~V~sl~~spdg~~L~sgs~D---------------g~I~IwDl~t~~~~~~~~~h 311 (713)
|.+||.. ++.... ... ....+.+++++++++++++...+ +.|..||.. ++..... ..
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 9999988 554332 211 12458899999999877776654 567777766 5443322 23
Q ss_pred CCCeEEEEEc----CCCCEEEEE-ECCCeEEEEECC-CCe-----eEEEeecCC-CCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 312 KNMVLCVKWN----QNGNWVLTA-SKDQIIKLYDIR-AMK-----ELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 312 ~~~I~si~fs----pdg~~Latg-s~Dg~I~IwDl~-t~~-----~l~~~~~h~-~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
......++|+ ++++.|+++ ..++.|++||++ +++ .+..+..+. ..+..+++++ +++++++...++.|
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHI 249 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEE
Confidence 3457889999 999766655 467899999986 443 223333333 5688999998 78888888888999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEEE--eCCcEEEEecCCCC
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS--~Dg~v~iWd~~~~~ 429 (713)
.+||.+++..... ...+...+.+++|++++. +.++ .++.|..|+++..+
T Consensus 250 ~~~d~~~g~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 250 EVFGPDGGQPKMR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEECTTCBSCSEE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEcCCCCcEeEE-EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 9999875543333 334557899999999997 4454 45689999886543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=141.95 Aligned_cols=234 Identities=9% Similarity=0.040 Sum_probs=169.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~ 222 (713)
.....|+|+++++++++...++.|++||.+++......... .... ++|+++++.|++++.++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46889999999987777777799999999987776665543 3333 99999999999988866 78888877665433
Q ss_pred ee----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE----EccCCCce--EEEEEcCC-CCEEEEEeCC
Q 005123 223 NK----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS----LTGHGWDV--KSVDWHPT-KSLLVSGGKD 291 (713)
Q Consensus 223 ~~----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~----l~~h~~~V--~sl~~spd-g~~L~sgs~D 291 (713)
.+ ......+.++++++++..|+++..++.|+.||..++..... ..+..... ..++|+++ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456788999999666666677889999999987654322 22222222 29999995 5555555667
Q ss_pred CcEEEEECCCCceEEEEccC---------------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecC--
Q 005123 292 SLVKLWDAKSGRELCSFHGH---------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGH-- 353 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h---------------~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h-- 353 (713)
+.|+.||.+.. +..+.++ -.....++|+++|+++++-+ .++.|++||+.+++. .++.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 88999997643 3333222 24578999999999777777 789999999877764 334333
Q ss_pred -------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 354 -------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 354 -------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
-.....|++++ ++.++++-..+++|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 24588999999 5888888888888888775
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-11 Score=132.79 Aligned_cols=236 Identities=7% Similarity=-0.066 Sum_probs=167.8
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCc
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spdg~~L~sgs~--DG~ 209 (713)
.++|++|+++|+++. .++.|.+||..+.+.+..+... ...-..++|++||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776542 123458999999999998874 478
Q ss_pred EEEEEcCCCceeee-eccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcCCCeeEEEEc-----cCCCc-eEEEEEcCC
Q 005123 210 IKYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWD-VKSVDWHPT 281 (713)
Q Consensus 210 I~vwdl~~~~~~~~-~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~-V~sl~~spd 281 (713)
|.++| .+++.+.. +.. .. ++.+.+++ +.+++.+.||++.+||. +++.+.... ..... .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888766 432 22 24444554 45677778999999999 776653322 11111 123455666
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--eEEEEccC----------CCCeEEEEEcCCCCEEEEEEC----------CCeEEEE
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH----------KNMVLCVKWNQNGNWVLTASK----------DQIIKLY 339 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h----------~~~I~si~fspdg~~Latgs~----------Dg~I~Iw 339 (713)
+..++..+.++.|.+.|+.+.. .+..+... ......+.+++|++.|+++.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6655555578899999997653 22222110 122344788999988887654 3579999
Q ss_pred ECCCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEE-CCCcEEEEEcCCCCceEE
Q 005123 340 DIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 340 Dl~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs-~DG~I~Iwd~~~~~~~~~ 392 (713)
|+.+++.+.++.. ......++|++ +++ +++++. .++.|.+||+.+.+....
T Consensus 304 D~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 304 TGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9999999888863 44689999999 555 777776 589999999988775544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-11 Score=127.49 Aligned_cols=236 Identities=7% Similarity=-0.014 Sum_probs=168.1
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+...+.+++++++++++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|..||.+ ++
T Consensus 58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 3445679999999999877776667889999987 554322 22234679999999999888777768899999987 55
Q ss_pred eeee-eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE-EccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 220 VKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 220 ~~~~-~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
.... +......+.++++.++++++++...++.|.+||. +++.... +......+.+++++++++++++...++.|.+|
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 4422 2334567899999999997666666789999998 4444332 22344578999999999877766667789999
Q ss_pred ECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 298 DAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 298 Dl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
|. +++.... +......+.+++++++|+++++...++.|.+||.. ++... .+......+.++++++ +++++++..
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~- 290 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGK-DGSVWFALK- 290 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECT-TSCEEEECS-
T ss_pred cC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCC-CCCEEEEcc-
Confidence 98 4544332 23345678999999999866666567899999984 44332 2233345688999988 566666554
Q ss_pred CCcEEEEEc
Q 005123 376 DGSIFHWLV 384 (713)
Q Consensus 376 DG~I~Iwd~ 384 (713)
+ .|..+|.
T Consensus 291 ~-~i~~~~p 298 (300)
T 2qc5_A 291 C-KIGKLNL 298 (300)
T ss_dssp S-EEEEEEE
T ss_pred C-ceEEeCC
Confidence 4 7777765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-11 Score=130.70 Aligned_cols=223 Identities=9% Similarity=0.004 Sum_probs=155.8
Q ss_pred ceEEEEEccCCCE-EEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 146 SINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 146 ~V~~v~~spdg~~-Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
-..+.+|++++.. +++...++.|.+||..+++.. .+. ....|.+++|+++++++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 4578899998554 455556789999999887543 333 35689999999998877754 44 4999999887754332
Q ss_pred cc----CCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCc
Q 005123 225 SA----HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL 293 (713)
Q Consensus 225 ~~----~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~ 293 (713)
.. ....+++++++++++++++... .+.|..+| +++... +.........++|+++++.|+++ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987765542 24566666 444333 32233457899999999877655 45688
Q ss_pred EEEEECC--CC-ce-----EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe-C
Q 005123 294 VKLWDAK--SG-RE-----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-P 364 (713)
Q Consensus 294 I~IwDl~--t~-~~-----~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs-p 364 (713)
|.+||++ ++ +. +..+.........++++.+|+++++...++.|.+||. +++.+..+..+...+++++|+ +
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 32 2222333456788999999988777777789999998 577777787777789999998 6
Q ss_pred CCCCEEEEEECC
Q 005123 365 FHEEYFVSGSLD 376 (713)
Q Consensus 365 ~~~~~lasgs~D 376 (713)
+.+.++++...+
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 334444555444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-12 Score=141.00 Aligned_cols=271 Identities=9% Similarity=0.024 Sum_probs=190.7
Q ss_pred cCCCEEEEEECC-----CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCC
Q 005123 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMN 218 (713)
Q Consensus 154 pdg~~Latgs~d-----g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~~~ 218 (713)
+++++++++... +.|.++|..+.+.+..+..-... .+++++|+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466667666553 68999999999999999876666 899999999988876 4678999999999
Q ss_pred ceeeeeccC-------CCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC-CCEEEEE
Q 005123 219 NVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSG 288 (713)
Q Consensus 219 ~~~~~~~~~-------~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd-g~~L~sg 288 (713)
+.+..+... ......+.|++|+++|+++.. +++|.++|+.+.+.+..+..... ....++ ...+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 888776432 234567899999999999875 57899999999998888764221 233333 3566777
Q ss_pred eCCCcEEEEECCCCceEEEE----ccCCCC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE--EEeecC--------
Q 005123 289 GKDSLVKLWDAKSGRELCSF----HGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGH-------- 353 (713)
Q Consensus 289 s~Dg~I~IwDl~t~~~~~~~----~~h~~~-I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l--~~~~~h-------- 353 (713)
+.||++.+.|+.+++..... ...... ...+.|++++..++..+.++.|.+.|+...... ..+..-
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 78888888888666554321 111111 123567899888888888899999999754421 111100
Q ss_pred --CCCeEEEEEeCCCCCEEEEEEC---------CCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc-EEEE---eCC
Q 005123 354 --RKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS---NDH 418 (713)
Q Consensus 354 --~~~V~sl~fsp~~~~~lasgs~---------DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS---~Dg 418 (713)
......+++++++.+++++... ++.|.++|+.+.+....+..+ ...+.|+|++|+. ++.+ .++
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTT
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCC
Confidence 0112236889954445554431 357999999888766665543 3589999999997 5543 489
Q ss_pred cEEEEecCCCCCcc
Q 005123 419 TTKFWCRNRPGDTA 432 (713)
Q Consensus 419 ~v~iWd~~~~~~~~ 432 (713)
.|.|+|....+...
T Consensus 394 ~VsVID~~t~kvv~ 407 (426)
T 3c75_H 394 TLHIYDAATGEELR 407 (426)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEECCCCCEEE
Confidence 99999997665543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=153.67 Aligned_cols=241 Identities=9% Similarity=0.048 Sum_probs=163.5
Q ss_pred CCCCceEEEEEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc-------
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~------- 209 (713)
+|...|..++|||||++||.+.. +..|+|||+.+++.+... .+.....+++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 45667999999999999986432 256999999999865431 111113577999 9999998887743
Q ss_pred ------EEEEEcCCCce----eeeecc-CCCCeeEEEEecCCCEEEEEEC----CCeEEEEEcCCCe-eEEEEccCCCce
Q 005123 210 ------IKYWQNNMNNV----KANKSA-HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQ-EERSLTGHGWDV 273 (713)
Q Consensus 210 ------I~vwdl~~~~~----~~~~~~-~~~~V~~l~fs~dg~~Las~s~----Dg~I~iwDl~~~~-~~~~l~~h~~~V 273 (713)
|++|++.+... +..... +...+.++.|++|+++|+.... +..|++||+.+.. ....+..+...+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999887642 222222 3445788999999998865443 3589999997763 344555555555
Q ss_pred EEEEEcCCCCEEEEEeC-C---CcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCC
Q 005123 274 KSVDWHPTKSLLVSGGK-D---SLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAM 344 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~-D---g~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg---~I~IwDl~t~ 344 (713)
... |+++++.|+..+. + +.|.++|+.++.. ...+..+...+. .|++++++|+....++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 5666666555543 3 5799999988654 344555555554 8888998888766544 6899998854
Q ss_pred eeEEEee-cCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcCCCC
Q 005123 345 KELESFR-GHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHET 388 (713)
Q Consensus 345 ~~l~~~~-~h~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~~~~~ 388 (713)
. ...+. .....+..+.+++++..++++.+.. ++|+.||+.++.
T Consensus 361 ~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 44443 2345677888887555555555442 789999986654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=136.32 Aligned_cols=232 Identities=9% Similarity=0.048 Sum_probs=164.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--eEEEEEcCCCeeEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~~~ 264 (713)
.....|+|+++++++++...++.|++||.+++.+...... ..... ++|+++++.|++++.++ .|.+||........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999998777777779999999998877655444 33334 99999999999988866 79999987655444
Q ss_pred EE----ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE----EccCCCCe--EEEEEcCC-CCEEEEEECC
Q 005123 265 SL----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS----FHGHKNMV--LCVKWNQN-GNWVLTASKD 333 (713)
Q Consensus 265 ~l----~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~----~~~h~~~I--~si~fspd-g~~Latgs~D 333 (713)
.+ ......+.++++++++..|+++..++.|+.||..++..... ..+..... ..++|+++ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456788999999656666677788999999987764332 22222222 38999995 5555555667
Q ss_pred CeEEEEECCCCeeEEEeecCC---------------CCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEeccc
Q 005123 334 QIIKLYDIRAMKELESFRGHR---------------KDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVH 397 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~---------------~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~~h 397 (713)
+.|+.||.... +..+.++. .....+++++ +++++++-+ .++.|+.|++.++. +..+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~--v~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGY--VSTVAGQ 363 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTE--EEEEEEC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCE--EEEEeCC
Confidence 89999998743 33333322 3478999999 677888877 88999999975543 2222222
Q ss_pred ---------------CCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 398 ---------------DNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 398 ---------------~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
-.....|++++++.++++ .++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246889999999977766 6677777765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=138.98 Aligned_cols=253 Identities=8% Similarity=-0.007 Sum_probs=174.1
Q ss_pred EEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCcE
Q 005123 150 VLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGAI 210 (713)
Q Consensus 150 v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~-------~~V~sl~~spdg~~L~sgs~--DG~I 210 (713)
+++++||++|+++. .++.|.+||..+.+.+..+.... ..-..++|++||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999988775 36789999999999988875422 24557899999999998874 6899
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-CeeEEEEccC----CCce-EEEEEc-CCCC
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGH----GWDV-KSVDWH-PTKS 283 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-~~~~~~l~~h----~~~V-~sl~~s-pdg~ 283 (713)
.|+|+.+++.+.++.... + ...+....+.+++.+.||++.+.++.+ ++.+...... ...+ ....|. ++++
T Consensus 163 sVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~ 239 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 239 (386)
T ss_dssp EEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence 999999999988874322 1 233444556777888899999999876 4443222111 1112 124564 5665
Q ss_pred EEEEEeCCCcEEEEECCCCc--eEEEEcc----------CCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005123 284 LLVSGGKDSLVKLWDAKSGR--ELCSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~--~~~~~~~----------h~~~I~si~fspdg~~Latgs~----------Dg~I~IwDl 341 (713)
++ ..+.+++|+++|+.+.. .+..+.. ....+..++++++++.|++... .+.|.++|+
T Consensus 240 ~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 240 LV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 44 46668999999997654 2222210 0122345778999988888653 257999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE-ECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 342 ~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg-s~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
++++.+..+.. ...+..|++++++..+|+++ ..++.|.++|..+.+.+..+.. .+.-+.|.+++|
T Consensus 319 ~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 319 KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 99999988863 34678999999544366554 4589999999988775544433 233444555554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=154.05 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=156.6
Q ss_pred cCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC---------
Q 005123 185 HDHAIRSMVWSHNDNWMVSGD-----DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--------- 250 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs-----~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--------- 250 (713)
+...+..++|||||++|+.+. ++..|+|||+++++.+... ........++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 455788999999999888432 2357999999999865431 111123678999 999999988774
Q ss_pred ----eEEEEEcCCCee--EEEEc--c-CCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eEEEEccCCCCeE
Q 005123 251 ----TVKVWDFARCQE--ERSLT--G-HGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR-ELCSFHGHKNMVL 316 (713)
Q Consensus 251 ----~I~iwDl~~~~~--~~~l~--~-h~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~-~~~~~~~h~~~I~ 316 (713)
.|++|++.+... ...+. . +...+.++.|++|+++|+.... ++.|+++|+.++. ....+..+...+.
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 399999977543 23333 2 3445789999999998866543 2489999998764 4455555555555
Q ss_pred EEEEcCCCCEEEEEEC-C---CeEEEEECCCCee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCC
Q 005123 317 CVKWNQNGNWVLTASK-D---QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 388 (713)
Q Consensus 317 si~fspdg~~Latgs~-D---g~I~IwDl~t~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~ 388 (713)
.. |+++++.|+..+. + +.|.++|+.++.. ...+..|...+. .|+++++.++++...++ .|++||++..
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 55 6667766665543 2 5799999987654 345555666665 78884444445555565 5888887633
Q ss_pred ceEEEecccCCCeEEEEEcCCCcEE-EE-eC----CcEEEEecCCC
Q 005123 389 PQVEIHNVHDNTVWDLAWHPIGYLL-CS-ND----HTTKFWCRNRP 428 (713)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~l-aS-~D----g~v~iWd~~~~ 428 (713)
....+.....+.+..+.+++++..+ .+ .+ ++|..||++..
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 2333333344567788888777433 22 33 77888877543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-13 Score=145.29 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=137.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCc---------eEE-EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---------FEM-ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~---------~~~-~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
.++.++++++..+|++|+.++ ++||++++.. ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 6669855332 111 2223566 999999 89999998 7899999999
Q ss_pred CCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
.+.........+...|.++.+... .+++++.||.|.+||+.++.... +...|+|++|+++| +++|..||+|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 887666666677778888887654 38899999999999998776643 34589999999999 78899999999
Q ss_pred EEECCCCce--EEEE------c---cCCCCeEEEEEcCCCCEEEEE
Q 005123 296 LWDAKSGRE--LCSF------H---GHKNMVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 296 IwDl~t~~~--~~~~------~---~h~~~I~si~fspdg~~Latg 330 (713)
+|+.+..+. ..++ . +|...|.+|+|.+++.+|++=
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999887775 5556 2 367889999999999888763
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-12 Score=130.90 Aligned_cols=231 Identities=9% Similarity=0.012 Sum_probs=159.4
Q ss_pred CCCCceEEEEEccCCC-EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.........+|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+ ++.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 3445678899999998 5556667889999998 444 44555667789999999999976666566889999986 543
Q ss_pred eeeecc----CCCCeeEEEEecCCCEEEE----EEC-------------CCeEEEEEcCCCeeEEEEccCCCceEEEEEc
Q 005123 221 KANKSA----HKESVRDLSFCRTDLKFCS----CSD-------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (713)
Q Consensus 221 ~~~~~~----~~~~V~~l~fs~dg~~Las----~s~-------------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~s 279 (713)
...... ....++++++.++++++++ +.. .+.|..||..+++..... .....+.++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 322211 1235778999999998876 321 256788887666544333 34567899999
Q ss_pred CCCCEEEEEeCC------CcEEEEECCCCceE--EEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 280 PTKSLLVSGGKD------SLVKLWDAKSGREL--CSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 280 pdg~~L~sgs~D------g~I~IwDl~t~~~~--~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
+|++.|+++..+ +.|.+||+..+... ..+ .........++++++|+++ +++.+ .|.+||. +++.+..+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEE
Confidence 999988877665 68999998765411 111 1123445678999999944 44444 5999998 47777777
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.... .+.+++|++ +++.|+.++.+ .|+.++
T Consensus 274 ~~~~-~~~~~~f~~-d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 274 PTPG-TASNCTFDQ-AQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp ECSS-CCCEEEECT-TSCEEEEEETT-EEEEEE
T ss_pred ECCC-ceeEEEEeC-CCCEEEEEcCC-eEEEEE
Confidence 6555 588999997 66666666665 444433
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-11 Score=130.73 Aligned_cols=263 Identities=6% Similarity=-0.038 Sum_probs=177.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC---------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD---------HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~---------~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.++.|+.||.++++.+-.+.... ..+.+. ..-++..|++++.++.|..+|.++++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5678888889999999999998876665421 223222 222467888889999999999999988766654
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-----~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
.........+. +..+++++.++.|..+|.++++.+..+....... ...... +..+++++.++.|..+|.++
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 43322222332 4578888899999999999998887765432211 222222 45788888899999999999
Q ss_pred CceEEEEccCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEE
Q 005123 302 GRELCSFHGHKNM----------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 302 ~~~~~~~~~h~~~----------I-~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~l 370 (713)
++.+..+...... + ....+ .+..|++++.++.|..+|.++++.+..... .....+.. ++..|
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~---~~~~l 280 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV---DGNRI 280 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE---ETTEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE---ECCEE
Confidence 9988776532110 1 11111 356788888899999999999998876653 33455554 35667
Q ss_pred EEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
++++.++.|..+|..+++............+.......+..++++.++.|.+||.+..+.
T Consensus 281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE
Confidence 778889999999998887655443222333444444444444555889999999866543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-11 Score=128.42 Aligned_cols=260 Identities=13% Similarity=0.038 Sum_probs=173.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe---
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V--- 231 (713)
++..|++++.++.|+.+|.++++.+-.............. .+..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 4567888999999999999999987766654332222223 24578888899999999999998877664432211
Q ss_pred --eEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc-------eEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 005123 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD-------VKSVDWHP--TKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 232 --~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~-------V~sl~~sp--dg~~L~sgs~Dg~I~IwDl~ 300 (713)
...... +..+++++.++.|..+|..+++.+......... +..+...+ .+..+++++.++.|..+|.+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 222222 456788888999999999999887666432110 00011111 25678888889999999999
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
+++.+..... .....+.. ++..|++++.++.|..+|.++++.+..... ....+...... +..|++++.+|.|
T Consensus 258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l 330 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYL 330 (376)
T ss_dssp TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEE
T ss_pred CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeE
Confidence 9998876652 33444544 466888889999999999999998877652 22333334432 4578888899999
Q ss_pred EEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 380 ~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
+++|.++++....................+..++++.||.|.+|+.
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 9999988775544433222222223334333455568899998863
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-10 Score=121.80 Aligned_cols=224 Identities=8% Similarity=0.056 Sum_probs=151.7
Q ss_pred EeccCCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 005123 182 LQAHDHAIRSMVWSHNDNW-MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~-L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~ 260 (713)
+.....-..+..|++++.. +++...++.|..||..+++... + .....+.+++++++++++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3334455678899986654 4555667899999998876532 2 34568999999999995544 4 568999999887
Q ss_pred eeEEEEcc----CCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 261 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 261 ~~~~~l~~----h~~~V~sl~~spdg~~L~sgs~D---------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
+....... ....+++++++++|+++++...+ ....||.+.....+..+.......+.++|++|++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 65433322 12458899999999966654321 223455443322233333334557899999999877
Q ss_pred EEE-ECCCeEEEEEC--CCCee-----EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 328 LTA-SKDQIIKLYDI--RAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 328 atg-s~Dg~I~IwDl--~t~~~-----l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+++ +.++.|.+||+ .+++. +..+..+......+++++ +++++++...++.|.+||.++++.. ..+..+..
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~-~~i~~p~~ 241 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRL-QTVKLPVD 241 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEE-EEEECSSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEE-EEEECCCC
Confidence 655 45789999997 44432 222333345678999998 6788888888889999998766543 34444567
Q ss_pred CeEEEEEc-CCCc
Q 005123 400 TVWDLAWH-PIGY 411 (713)
Q Consensus 400 ~V~~l~~s-pdg~ 411 (713)
.+++++|. +++.
T Consensus 242 ~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 242 KTTSCCFGGKNYS 254 (297)
T ss_dssp BEEEEEEESGGGC
T ss_pred CceEEEEeCCCCC
Confidence 89999998 6653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-12 Score=135.60 Aligned_cols=254 Identities=11% Similarity=0.025 Sum_probs=167.0
Q ss_pred CceEEEEEccCCCEEEEEEC--CCcEEEEeCCCCceEEEE-------eccCCCEEEEEEccCCCEEEEEeC-----CCcE
Q 005123 145 CSINRVLWTPTGRRLITGSQ--SGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHNDNWMVSGDD-----GGAI 210 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~--dg~V~Iwd~~t~~~~~~l-------~~h~~~V~sl~~spdg~~L~sgs~-----DG~I 210 (713)
..+..|+++++|+++++... ++.++||.+.+++.. .+ ..+-..+.+|+++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 343555554444332 22 124467999999999876555433 5789
Q ss_pred EEEEcCCCceeeeeccC------CCCeeEEEEecCCCEEE-EEE---CCCeEEEEEcCCCeeEEEEccCCCceE-EEEEc
Q 005123 211 KYWQNNMNNVKANKSAH------KESVRDLSFCRTDLKFC-SCS---DDTTVKVWDFARCQEERSLTGHGWDVK-SVDWH 279 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~------~~~V~~l~fs~dg~~La-s~s---~Dg~I~iwDl~~~~~~~~l~~h~~~V~-sl~~s 279 (713)
.+||+.+++++..+... ...+.++++++++..++ +.. .++.|.+||+.+++..+.+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999998866555321 23568999997655554 444 578999999998877666654322110 13334
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECC---CCe-----eEE--
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIR---AMK-----ELE-- 348 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg-~I~IwDl~---t~~-----~l~-- 348 (713)
.++..+.+.+.++.++.|. ..+..|+|++|+++|+++..++ .|+.+|.. .+. ...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 4566777777777776653 2367899999999999888766 55555532 110 000
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec-ccCCCeEEEEEcCCCcEEEE
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~laS 415 (713)
...++......+++++ +++++++...++.|.+||..+++ ...+.. .+...+.+|+|.+++.++++
T Consensus 242 ~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 242 ERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp EEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred EecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEE
Confidence 1112334566789998 68899999899999999984443 222222 22456889999988866655
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=140.29 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=137.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc---------eee-eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---------VKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~---------~~~-~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
.++.++++++..+|++|+.++ ++||++++.+ ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999875 5669865433 111 1223455 999999 89999998 8899999999
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~ 337 (713)
.+......+..+...+.++.+.+. .+++++.||.|.+||++++.... +...|+|++||++| +++|..||+|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 877666666677788888888754 38889999999999999877653 34579999999999 78899999999
Q ss_pred EEECCCCee--EEEe------e---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 338 LYDIRAMKE--LESF------R---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 338 IwDl~t~~~--l~~~------~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+|+....+. ..++ . +|...|.+|.|.+ +..++++-.
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEEc
Confidence 999987775 5556 2 3778899999998 677777643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-11 Score=133.70 Aligned_cols=239 Identities=6% Similarity=-0.011 Sum_probs=171.2
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCc
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spdg~~L~sgs~--DG~ 209 (713)
.+++++|+++|+++. .++.|.++|..+.+.+..+... ......++|++|+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998876 3678999999999998887542 123457899999999999874 578
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCeeEEEE----ccCCCc-eEEEEEcCCCC
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSL----TGHGWD-VKSVDWHPTKS 283 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~~~~l----~~h~~~-V~sl~~spdg~ 283 (713)
|.++|+.+.+++..+..... ....++ ...+++.+.||++.+.|+.+++..... ...... ...+.|.+++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 99999999998877654221 222333 356677778888888888665544321 111111 12456788888
Q ss_pred EEEEEeCCCcEEEEECCCCceE--EEEcc---C-------CCCeEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005123 284 LLVSGGKDSLVKLWDAKSGREL--CSFHG---H-------KNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~--~~~~~---h-------~~~I~si~fspdg~~Latgs~----------Dg~I~IwDl 341 (713)
.++..+.++.|.+.|+.+.... ..+.. . ......+++++++++|++... ++.|.++|+
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 8888888899999998764422 11110 0 011223789999888877653 357999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEE-CCCcEEEEEcCCCCceEEE
Q 005123 342 RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 342 ~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs-~DG~I~Iwd~~~~~~~~~~ 393 (713)
.+.+.+.++..- .....++|++ +++ +++++. .++.|.|+|+.+.+....+
T Consensus 358 ~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 358 ETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999888632 3578999999 566 777777 5999999999888765554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-10 Score=119.38 Aligned_cols=214 Identities=8% Similarity=-0.023 Sum_probs=146.7
Q ss_pred CEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 188 AIRSMVWSHNDNW-MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 188 ~V~sl~~spdg~~-L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
...+.+|++++.. +++...++.|.+||.++++.... .....+.+++|++++++++++ .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 4567899997554 45555678999999988765432 234679999999999877654 44 5999999877654332
Q ss_pred cc----CCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 005123 267 TG----HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (713)
Q Consensus 267 ~~----h~~~V~sl~~spdg~~L~sgs~------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~ 335 (713)
.. ....+.+++++++++++++... .+.|..+| +++.. .+.........++|++|+++|+++. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987665542 24566666 45433 3322334578899999998776654 5689
Q ss_pred EEEEECC--CC-e-----eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEc
Q 005123 336 IKLYDIR--AM-K-----ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 336 I~IwDl~--t~-~-----~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
|.+||++ ++ + .+..+......+..+++++ +++++++...++.|.+||. ++. .+..+..+...+++++|+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~-~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGN-HIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCC-EEEEEECSCSBEEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCC-EEEEEECCCCCcEEEEEe
Confidence 9999986 55 3 1223333345678899988 6778877777789999998 333 344444556679999998
Q ss_pred -CCCc
Q 005123 408 -PIGY 411 (713)
Q Consensus 408 -pdg~ 411 (713)
+++.
T Consensus 280 g~d~~ 284 (326)
T 2ghs_A 280 GPDAS 284 (326)
T ss_dssp STTSC
T ss_pred cCCCC
Confidence 7764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-11 Score=138.44 Aligned_cols=255 Identities=10% Similarity=0.034 Sum_probs=179.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEecc-C----CCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH-D----HAIRSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-~----~~V~sl~~spdg~~L~sgs~------DG~I~vwdl~~~~~~~~ 223 (713)
++..|++++.|+.|+.+|..+++.+-.+... . ..+.+.-.. .+..+++++. ++.|+.||.++++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4668889999999999999999998887754 2 122211111 2345555543 69999999999998776
Q ss_pred eccCCC--------------------------------CeeEEEEecCCCEEEEEECCC-------------------eE
Q 005123 224 KSAHKE--------------------------------SVRDLSFCRTDLKFCSCSDDT-------------------TV 252 (713)
Q Consensus 224 ~~~~~~--------------------------------~V~~l~fs~dg~~Las~s~Dg-------------------~I 252 (713)
+..... ....+++++++.+|++++.++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 643211 113578888888888887664 59
Q ss_pred EEEEcCCCeeEEEEcc--CC-------CceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEccCC-CC-----
Q 005123 253 KVWDFARCQEERSLTG--HG-------WDVKSVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NM----- 314 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~--h~-------~~V~sl~~spdg---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~----- 314 (713)
..+|.++++.+..+.. |. .....+....+| +.|++++.+|.|+++|.++++.+..+.... ..
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999999998877653 21 122233333366 688999999999999999999887664221 00
Q ss_pred -----e------------------------EEEEEcCCCCEEEEEECC--------------------------------
Q 005123 315 -----V------------------------LCVKWNQNGNWVLTASKD-------------------------------- 333 (713)
Q Consensus 315 -----I------------------------~si~fspdg~~Latgs~D-------------------------------- 333 (713)
+ ..++|++++.+|++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 1 146888988888876432
Q ss_pred -----------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 334 -----------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 334 -----------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
+.|..||+++++.+..+.. ...+....+.. .+.++++++.||.|++||.++++.+..+...+.....
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 7899999999999888763 33344444555 5667888899999999999999887777665544445
Q ss_pred EEEEcCCCcE
Q 005123 403 DLAWHPIGYL 412 (713)
Q Consensus 403 ~l~~spdg~~ 412 (713)
-+.|..+|..
T Consensus 524 p~~y~~~G~~ 533 (677)
T 1kb0_A 524 PSTYMVDGRQ 533 (677)
T ss_dssp CEEEEETTEE
T ss_pred CEEEEeCCEE
Confidence 5667777743
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-11 Score=137.42 Aligned_cols=255 Identities=8% Similarity=0.004 Sum_probs=174.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEecc--C---CCEEE-EEEccCCCEEEEEe------CCCcEEEEEcCCCceee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH--D---HAIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~---~~V~s-l~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~ 222 (713)
++.+|++++.|+.|+.+|.++++.+-.+... . ..+.+ ..+ .++ .+++++ .+|.|..||.++++.+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3568889999999999999999988776542 1 11111 111 144 444443 36899999999999876
Q ss_pred eeccCC-------------------------------CCeeEEEEecCCCEEEEEECCCe-------------------E
Q 005123 223 NKSAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDTT-------------------V 252 (713)
Q Consensus 223 ~~~~~~-------------------------------~~V~~l~fs~dg~~Las~s~Dg~-------------------I 252 (713)
.+.... .....++++++..+|++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 654210 01125788888889999887764 9
Q ss_pred EEEEcCCCeeEEEEccC--C-------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC-CC-----
Q 005123 253 KVWDFARCQEERSLTGH--G-------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK-NM----- 314 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h--~-------~~V~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~----- 314 (713)
..||.++++.+..+... . ..+....+..+++ .|+.++.+|.|+++|.++++.+....... .+
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 99999999998877542 1 1122222222454 78899999999999999999875432111 00
Q ss_pred ---------------------------------eEEEEEcCCCCEEEEEEC-----------------------------
Q 005123 315 ---------------------------------VLCVKWNQNGNWVLTASK----------------------------- 332 (713)
Q Consensus 315 ---------------------------------I~si~fspdg~~Latgs~----------------------------- 332 (713)
-..++|+++..+|++.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 112678888887776532
Q ss_pred ----------------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc
Q 005123 333 ----------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (713)
Q Consensus 333 ----------------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~ 396 (713)
++.|+.||+++++.+..+..+... ....++. .+.++++++.||.|++||.++++.+.++...
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 377999999999999888755432 3234444 5778889999999999999999877776655
Q ss_pred cCCCeEEEEEcCCCcEE
Q 005123 397 HDNTVWDLAWHPIGYLL 413 (713)
Q Consensus 397 h~~~V~~l~~spdg~~l 413 (713)
+.....-+.|..+|+..
T Consensus 516 ~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SCCCSCCEEEEETTEEE
T ss_pred CCcccCceEEEECCEEE
Confidence 44444556777888433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-10 Score=119.27 Aligned_cols=234 Identities=7% Similarity=-0.067 Sum_probs=154.2
Q ss_pred EEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 179 EMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 179 ~~~l~~h~~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
+..+..........+|+++++ ++++...++.|..|+. +++. ..+......+..++++++++++++...++.|.+||.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 334444556678899999998 5556667889999988 4443 344455677899999999997666556689999998
Q ss_pred CCCeeEEEEcc----CCCceEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEccCCCCeE
Q 005123 258 ARCQEERSLTG----HGWDVKSVDWHPTKSLLVS----GGK-------------DSLVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 258 ~~~~~~~~l~~----h~~~V~sl~~spdg~~L~s----gs~-------------Dg~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
. ++....... ....+++++++++|+++++ |.. .+.|+.||.++++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 443222211 1235778999999997775 332 256888888776654433 345678
Q ss_pred EEEEcCCCCEEEEEECC------CeEEEEECCCCee--EEEe-ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 317 CVKWNQNGNWVLTASKD------QIIKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 317 si~fspdg~~Latgs~D------g~I~IwDl~t~~~--l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.++|++|+++|+++... +.|++||+..... ...+ .........+++++ +++++++. .+ .|.+|+.+ +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~-g 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD-G 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-S
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-C
Confidence 89999999988887765 7899999876441 1111 11234456788888 66755544 44 59999873 3
Q ss_pred CceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEE
Q 005123 388 TPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFW 423 (713)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iW 423 (713)
+ .+..+.... .+.+++|++++..| ++.++.+..+
T Consensus 268 ~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 Q-LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp C-EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred C-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 3 333333333 58899999887443 4444444433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-13 Score=145.86 Aligned_cols=195 Identities=11% Similarity=0.053 Sum_probs=117.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC-Cee-
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE-SVR- 232 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~-~V~- 232 (713)
++.+|++++.|+.|+.||..+++.+-.+.. +.+.+..+..+++.+++++.||.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999888776 4555555666777888888999999999988877655433211 111
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC
Q 005123 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
+..+. ++..|++++.|+.|+.||.++++.+..+..+. .+.+++++..|++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34567788889999999999998887766443 23455678889999999999999999998776654211
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 313 NMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 313 ~~I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
....+++.+. ..+++++.|+.|+.||.++++.+..+.. ...+..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVA 207 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEE
Confidence 1223333322 5677889999999999999999888773 344433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=135.69 Aligned_cols=274 Identities=9% Similarity=0.047 Sum_probs=177.8
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC----------E-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~----------V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+.+|..+++.+-++...... + ..+++ ++..|++++.|+.|..+|.++++.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567888888999999999999988777543221 1 11222 4678888999999999999999988766
Q ss_pred ccC-C----CCeeEEEEecCCCEEEEEE-----CCCeEEEEEcCCCeeEEEEccCC------------------------
Q 005123 225 SAH-K----ESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHG------------------------ 270 (713)
Q Consensus 225 ~~~-~----~~V~~l~fs~dg~~Las~s-----~Dg~I~iwDl~~~~~~~~l~~h~------------------------ 270 (713)
... . ..+.+.-...++..++.++ .++.|+.||.++++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 442 1 1111111111444333322 37899999999999887764210
Q ss_pred -------CceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEcc--CC-------CCe
Q 005123 271 -------WDVKSVDWHPTKSLLVSGGKDSL-------------------VKLWDAKSGRELCSFHG--HK-------NMV 315 (713)
Q Consensus 271 -------~~V~sl~~spdg~~L~sgs~Dg~-------------------I~IwDl~t~~~~~~~~~--h~-------~~I 315 (713)
.....++++++.++|++++.++. |..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 01125788888889999887763 99999999999887754 21 112
Q ss_pred EEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEEeecCC-CC-----------------------------------
Q 005123 316 LCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHR-KD----------------------------------- 356 (713)
Q Consensus 316 ~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-~~----------------------------------- 356 (713)
.......+|+ .|++++.+|.|+++|.++++.+....... ..
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 2222223565 78899999999999999999875433111 00
Q ss_pred ---eEEEEEeCCCCCEEEEEEC---------------------------------------------CCcEEEEEcCCCC
Q 005123 357 ---VTALAWHPFHEEYFVSGSL---------------------------------------------DGSIFHWLVGHET 388 (713)
Q Consensus 357 ---V~sl~fsp~~~~~lasgs~---------------------------------------------DG~I~Iwd~~~~~ 388 (713)
-..++|++ +..+|++.+. +|.|+.||+.+++
T Consensus 388 g~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 388 AHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp SSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred ccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 11267888 4555555422 3779999998887
Q ss_pred ceEEEecccCCCeEEEEEc-CCCcEE-EEeCCcEEEEecCCCCCcccc
Q 005123 389 PQVEIHNVHDNTVWDLAWH-PIGYLL-CSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~s-pdg~~l-aS~Dg~v~iWd~~~~~~~~~~ 434 (713)
.+.+... + ..+..-.+. ..+.++ ++.|+.|++||.+..+...+.
T Consensus 467 ~~W~~~~-~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 467 AAWEVPY-V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp EEEEEEE-S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEeEccC-C-CCccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 6555433 2 223322333 344444 348999999999776655443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-11 Score=124.91 Aligned_cols=265 Identities=11% Similarity=0.015 Sum_probs=176.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
..+.++....++. |++++.+ |+.||. +++....+......+....+. +..|++++.++.|..+|.+ ++.....
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3456777776665 5555544 888886 444332222222222233333 5677888888999999988 7666665
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 225 ~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
......+.++....++. |++++.++.|..||.. ++.+..+......+.++.+..++.++ +++ +.|..|| .+++.
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCE
T ss_pred cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcE
Confidence 55555667777766665 6667788999999998 77766666556677788887777644 444 7899999 77877
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+..+......+.++.+..++. |.+++.++.|..+|. +++.+..+......+.++.+.. +..|..++.+|.|..+|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 207 KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEECT
T ss_pred EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEECC
Confidence 777766666788888887775 566777888999984 5666666665444445555543 445677888889999985
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecCCC
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~~~ 428 (713)
++... .........+.++..+.++.+.+ +.+|.+++...+..
T Consensus 283 -~g~~~-~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 283 -DGTEK-WNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -TSCEE-EEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred -CCcEE-EEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 44433 33333456678888877776554 58999998876443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-10 Score=135.37 Aligned_cols=272 Identities=8% Similarity=0.029 Sum_probs=182.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC-----------CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----------AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-----------~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+.+|..+++.+-++..... ....+++ ++..|++++.|+.|..+|..+++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55788888889999999999998877764321 1122333 4678888999999999999999988777
Q ss_pred ccC-C----CCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCc---------------------
Q 005123 225 SAH-K----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD--------------------- 272 (713)
Q Consensus 225 ~~~-~----~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~--------------------- 272 (713)
... . ..+.+--...+ ..+++++. ++.|+.||.++++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 544 1 12221111113 44555443 789999999999988776532211
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEcc--CC-------C
Q 005123 273 -----------VKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------N 313 (713)
Q Consensus 273 -----------V~sl~~spdg~~L~sgs~Dg-------------------~I~IwDl~t~~~~~~~~~--h~-------~ 313 (713)
...+++++++++|++++.++ .|..+|.++++.+..+.. +. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 13578888888898887664 499999999999887753 21 1
Q ss_pred CeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeeEEEeecCCC-----------Ce----------------------
Q 005123 314 MVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRK-----------DV---------------------- 357 (713)
Q Consensus 314 ~I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~-----------~V---------------------- 357 (713)
....+....+| +.|++++.+|.|+++|.++++.+..+..... .+
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 22233333477 6889999999999999999999876653210 01
Q ss_pred --EEEEEeCCCCCEEEEEEC-------------------------------------------CCcEEEEEcCCCCceEE
Q 005123 358 --TALAWHPFHEEYFVSGSL-------------------------------------------DGSIFHWLVGHETPQVE 392 (713)
Q Consensus 358 --~sl~fsp~~~~~lasgs~-------------------------------------------DG~I~Iwd~~~~~~~~~ 392 (713)
..+++++ +..++++... .|.|..||+.+++...+
T Consensus 394 ~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 394 NWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp CSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred CCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 1467888 4555555432 27899999988876555
Q ss_pred EecccCCCeEEEEEcCCC-cEE-EEeCCcEEEEecCCCCCccc
Q 005123 393 IHNVHDNTVWDLAWHPIG-YLL-CSNDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 393 ~~~~h~~~V~~l~~spdg-~~l-aS~Dg~v~iWd~~~~~~~~~ 433 (713)
... ...++...+..++ .++ ++.|+.+++||....+...+
T Consensus 473 ~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 473 VEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 432 3344444454444 333 34899999999976655443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=123.63 Aligned_cols=233 Identities=9% Similarity=-0.087 Sum_probs=156.1
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeccC-------CC
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAH-------KE 229 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~vwdl~~~~~~~~~~~~-------~~ 229 (713)
.|.++|..+++.+.++...... .+.+++|+++|+++. .++.|.+||+.+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999999876666 799999999999886 3688999999999998887543 13
Q ss_pred CeeEEEEecCCCEEEEEEC--CCeEEE--EEcCCCeeEEEEccC------------------CCceEEEEE---------
Q 005123 230 SVRDLSFCRTDLKFCSCSD--DTTVKV--WDFARCQEERSLTGH------------------GWDVKSVDW--------- 278 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~--Dg~I~i--wDl~~~~~~~~l~~h------------------~~~V~sl~~--------- 278 (713)
....+.+++|+++|+++.. +..|.+ +|+.+ +..+... .+.+..+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 4678999999999999875 467888 88865 2222110 001111111
Q ss_pred -----------------cCCCCEEEEEeCCCcEEEEECCCCc--eEEEEccC------C----CCeEEEEEcCCCCEEEE
Q 005123 279 -----------------HPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH------K----NMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 279 -----------------spdg~~L~sgs~Dg~I~IwDl~t~~--~~~~~~~h------~----~~I~si~fspdg~~Lat 329 (713)
.+++..++..+. +.|.+.|+.+.. .+..+... . .....++|++|++.|++
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 222333344444 666677765432 11111100 0 11122689999998887
Q ss_pred EEC-C--------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcCCCCceEEEecccCC
Q 005123 330 ASK-D--------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 330 gs~-D--------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs-~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+.. + +.+.++|+.+.+.+..+.... ....++|++++..++++.. .++.|.++|+.+.+.+..+.. ..
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v--g~ 357 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL--DK 357 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC--CS
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC--CC
Confidence 643 2 356799999999988886443 5889999995555788888 699999999988765544432 23
Q ss_pred CeEEEEEcC
Q 005123 400 TVWDLAWHP 408 (713)
Q Consensus 400 ~V~~l~~sp 408 (713)
..+.+++.+
T Consensus 358 ~P~~i~~~~ 366 (368)
T 1mda_H 358 GPESLSVQN 366 (368)
T ss_dssp CCCEEECCC
T ss_pred CCCEEEeec
Confidence 445555543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.9e-09 Score=105.40 Aligned_cols=251 Identities=6% Similarity=-0.017 Sum_probs=160.7
Q ss_pred CEEEEEECCCcEEEEeCCCCce-----EEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCC
Q 005123 157 RRLITGSQSGEFTLWNGQSFNF-----EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKES 230 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~-----~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~ 230 (713)
.+|+.+.. +.|+.+++..... ...+......+..++|+++++.|+.++ .++.|.+++.+..............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555553 4788888765432 122222234678999999777666555 5679999998876544433333357
Q ss_pred eeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEE
Q 005123 231 VRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELC 306 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~~~~ 306 (713)
...+++++++..|+.+. .++.|.++|+........+.........+++++++..|+.+.. .+.|..++++......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 88999998766655554 5679999998654333333323356789999997666666554 3678888886433222
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...........+++++++++|+++. ..+.|.++|+........+.. ......++.. ++.++++...++.|.++|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 2223345678999999877776555 567899999985544333332 3345667653 45566666567899999987
Q ss_pred CCCceEEEecccCCCeEEEEEcCCCc
Q 005123 386 HETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
+++....+..+.....+.|++.+++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 76655444433223467788877764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=140.98 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=118.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-ceE-
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVK- 274 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-~V~- 274 (713)
++..|++++.||.|+.||..+++.+..+.. ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578999999999999999999998887765 4555555666777888888999999999988877666543211 111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC
Q 005123 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (713)
Q Consensus 275 sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~ 354 (713)
+..+. ++..|++++.|+.|+.||.++|+.+.++..+. .+.+++++..|++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34577888889999999999999887776443 23456688889999999999999999998876654321
Q ss_pred CCeEEEEEeCCC--CCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE-EEEEcCCCcE
Q 005123 355 KDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYL 412 (713)
Q Consensus 355 ~~V~sl~fsp~~--~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~ 412 (713)
....+++.+. +..+++++.||.|+.||.++++...... ....+. ...++.++.+
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGLR 217 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSCE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCceE
Confidence 1222232210 1457778899999999998877544433 233443 3445566643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=123.10 Aligned_cols=227 Identities=7% Similarity=-0.042 Sum_probs=155.5
Q ss_pred CCCCceEEEEEccCCCEEEEEEC-----CCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCCCEEEEEe----C
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWMVSGD----D 206 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg~~L~sgs----~ 206 (713)
.|...+.+|+++++++++++-.. +..|.+||+.+++.+..+... ...+..+++++++..++++. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 56778999999999876555433 578999999999877776542 23568999997665655444 5
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCee-EEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEE
Q 005123 207 GGAIKYWQNNMNNVKANKSAHKESVR-DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~~~~~V~-~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
++.|.+||+.+++....+..|..... ...+..++..+.+.+.+++++.|. ..+..|+|+++++.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999998887766544322111 134455777777777888876663 246789999999988
Q ss_pred EEEeCCC-cEEEEECC---CCc-----eE--EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec-C
Q 005123 286 VSGGKDS-LVKLWDAK---SGR-----EL--CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-H 353 (713)
Q Consensus 286 ~sgs~Dg-~I~IwDl~---t~~-----~~--~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~-h 353 (713)
+++..++ .|..+|.. .+. .. ....++......++++++|+++++...++.|.+||..+++....... +
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 8887766 45555532 111 00 01112334567799999999888888899999999855664333332 2
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 354 ~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
...+++++|.+ ++.++++.+..+.+.+|.
T Consensus 290 ~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 290 LSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred eecCCeeEECC-CCcEEEEeCccccccccc
Confidence 45689999998 677877777655554443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-09 Score=113.05 Aligned_cols=219 Identities=12% Similarity=0.067 Sum_probs=152.8
Q ss_pred cCCCEEEEE-ECCCcEEEEeCCCC----ceEEEEe-------ccCCCEEEEEEccCCCEEEEEeCC------CcEEEEEc
Q 005123 154 PTGRRLITG-SQSGEFTLWNGQSF----NFEMILQ-------AHDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (713)
Q Consensus 154 pdg~~Latg-s~dg~V~Iwd~~t~----~~~~~l~-------~h~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl 215 (713)
.++++|++. ..++.|+|+|+.+. +.++++. .....-..+..++++ +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788887765 45788999998765 6666663 112245667888999 66665544 78999999
Q ss_pred CCCceeeeeccCCC---CeeEEEEecCCCEEEEEE-------------------CCCeEEEEEcCCCeeEEEEccCC--C
Q 005123 216 NMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCS-------------------DDTTVKVWDFARCQEERSLTGHG--W 271 (713)
Q Consensus 216 ~~~~~~~~~~~~~~---~V~~l~fs~dg~~Las~s-------------------~Dg~I~iwDl~~~~~~~~l~~h~--~ 271 (713)
++.+++.++..... .-.++.|+++++.++++. .+.+|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99998888763322 234688899999888885 36899999999988887776421 3
Q ss_pred ceEEEEE--cCCCCEEEEEeC------CCcEEEEECCCCce--EEEE--ccC----------------CCCeEEEEEcCC
Q 005123 272 DVKSVDW--HPTKSLLVSGGK------DSLVKLWDAKSGRE--LCSF--HGH----------------KNMVLCVKWNQN 323 (713)
Q Consensus 272 ~V~sl~~--spdg~~L~sgs~------Dg~I~IwDl~t~~~--~~~~--~~h----------------~~~I~si~fspd 323 (713)
....|.| +|+++++++++. +++|.+|..+.++. +..+ ... ......|.+|+|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4556666 999998888774 56787776554431 1111 110 245788999999
Q ss_pred CCEEEEEEC-CCeEEEEECCC---CeeEEEeecCC--------------CCeEEEEEeCCCCCEEEEEE
Q 005123 324 GNWVLTASK-DQIIKLYDIRA---MKELESFRGHR--------------KDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 324 g~~Latgs~-Dg~I~IwDl~t---~~~l~~~~~h~--------------~~V~sl~fsp~~~~~lasgs 374 (713)
|++|+++.. .+.|.+||+.. .+.+..+.... ..-..+++++ ++++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 999998875 67999999852 35555544321 1257889999 677766665
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.7e-11 Score=122.98 Aligned_cols=256 Identities=13% Similarity=0.057 Sum_probs=170.8
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~ 230 (713)
.+..++ .|++++.++.|..|| .+++....+......+.++....++. |++++.+ |..+|. +++....+......
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 343445 466777888899999 78777655554455567777766654 4555544 888885 55544443333333
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 231 V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
.....+. +..|.+++.++.|..+|.. ++....+......+.++....++. |++++.++.|..||.+ ++.+..+..
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 3334443 5667888889999999988 666666655555667777777776 6667788999999998 887777765
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
....+.++.+..++.+++ ++ +.|..|| .+++.+..+......+.++.... ++ .|..++.++.|..+|. ++...
T Consensus 175 ~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp SSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEE
T ss_pred CCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEe
Confidence 566677788877777544 44 7899999 77887777766666788888876 44 4556677888888874 33333
Q ss_pred EEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
.. .......+.++.+..++.+.+ +.++.|..+|.
T Consensus 248 ~~-~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WR-FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EE-EECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred EE-eeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 32 223334455667776776554 47778888874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-09 Score=124.81 Aligned_cols=273 Identities=9% Similarity=0.054 Sum_probs=174.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC----------E-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~----------V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.++.|+.+|..+++.+-++...... + ..+++ ++..|++++.|+.|..+|.++++.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557888888999999999999988777543211 0 12233 3567888899999999999999988776
Q ss_pred ccCC----CCeeE-EEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCC-----------------------
Q 005123 225 SAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG----------------------- 270 (713)
Q Consensus 225 ~~~~----~~V~~-l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~----------------------- 270 (713)
.... ..+.+ ..+ .++ .+++++. ++.|+.||.++++.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 111 134 4454432 5899999999999887765210
Q ss_pred --------CceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEcc--CC-------CC
Q 005123 271 --------WDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------NM 314 (713)
Q Consensus 271 --------~~V~sl~~spdg~~L~sgs~Dg-------------------~I~IwDl~t~~~~~~~~~--h~-------~~ 314 (713)
.....++++++.+++++++.++ .|..+|.++++.+..+.. |. ..
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888888888766 399999999999888764 22 22
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEEeecCCC------------Ce----------------------
Q 005123 315 VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK------------DV---------------------- 357 (713)
Q Consensus 315 I~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~------------~V---------------------- 357 (713)
.....+..+|+ .|++++.+|.|+++|.++++.+..+..... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22233334665 688999999999999999998854432210 00
Q ss_pred --EEEEEeCCCCCEEEEE-----------------------------------ECCCcEEEEEcCCCCceEEEecccCCC
Q 005123 358 --TALAWHPFHEEYFVSG-----------------------------------SLDGSIFHWLVGHETPQVEIHNVHDNT 400 (713)
Q Consensus 358 --~sl~fsp~~~~~lasg-----------------------------------s~DG~I~Iwd~~~~~~~~~~~~~h~~~ 400 (713)
..++++++.+.+++.. ..+|.|..||+.+++...+.... ..
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~ 459 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--TH 459 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SS
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CC
Confidence 1256777333333211 12478999999888765554432 22
Q ss_pred eEEEEEc-CCCcEE-EEeCCcEEEEecCCCCCcccc
Q 005123 401 VWDLAWH-PIGYLL-CSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 401 V~~l~~s-pdg~~l-aS~Dg~v~iWd~~~~~~~~~~ 434 (713)
+....+. .++.++ ++.|+.|++||.+..+...+.
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 3222222 334444 448999999998765554443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-09 Score=114.69 Aligned_cols=220 Identities=10% Similarity=0.053 Sum_probs=145.9
Q ss_pred cCCCEEEE-EeCCCcEEEEEcCCC----ceeeeec-------cCCCCeeEEEEecCCCEEEEEECC------CeEEEEEc
Q 005123 196 HNDNWMVS-GDDGGAIKYWQNNMN----NVKANKS-------AHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDF 257 (713)
Q Consensus 196 pdg~~L~s-gs~DG~I~vwdl~~~----~~~~~~~-------~~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl 257 (713)
.++++|++ +..++.|.|+|+.+. ++.+++. .....-..+.+++++ .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887775 556789999999765 5555542 111244567788999 66666555 78999999
Q ss_pred CCCeeEEEEccCC---CceEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceEEEEccC-C-C
Q 005123 258 ARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGG-------------------KDSLVKLWDAKSGRELCSFHGH-K-N 313 (713)
Q Consensus 258 ~~~~~~~~l~~h~---~~V~sl~~spdg~~L~sgs-------------------~Dg~I~IwDl~t~~~~~~~~~h-~-~ 313 (713)
++.+.+.++.... ..-..+.|+++++.+++.. .+.+|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999988886332 2234688899999888874 3688999999998888777642 1 2
Q ss_pred CeEEEEE--cCCCCEEEEEEC------CCeEEEEECCCCee--EEEe--ecC----------------CCCeEEEEEeCC
Q 005123 314 MVLCVKW--NQNGNWVLTASK------DQIIKLYDIRAMKE--LESF--RGH----------------RKDVTALAWHPF 365 (713)
Q Consensus 314 ~I~si~f--spdg~~Latgs~------Dg~I~IwDl~t~~~--l~~~--~~h----------------~~~V~sl~fsp~ 365 (713)
....|.| +++++++++++. +++|.+|..+.++. +..+ ... ......|.+|+
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~- 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL- 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-
Confidence 3455656 999999888774 56887776654321 1111 110 24578899999
Q ss_pred CCCEEE-EEECCCcEEEEEcCCCCc--eEE-EecccC-------------CCeEEEEEcCCCcEEEEeC
Q 005123 366 HEEYFV-SGSLDGSIFHWLVGHETP--QVE-IHNVHD-------------NTVWDLAWHPIGYLLCSND 417 (713)
Q Consensus 366 ~~~~la-sgs~DG~I~Iwd~~~~~~--~~~-~~~~h~-------------~~V~~l~~spdg~~laS~D 417 (713)
++++|. +.-..+.|.+||+..... ++. +..+-. +.-..+++++||++|...+
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 455554 444578999999964322 222 222100 1257899999997775433
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=119.03 Aligned_cols=254 Identities=8% Similarity=0.053 Sum_probs=166.3
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC----CCEEE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----~~V~s-l~~spdg~~L~sgs~------DG~I~vwdl~~~~~~~~~ 224 (713)
+.+|++++.|+.|+.+|.++++.+-.+.... ..+.+ ..+ .+..++++.. +|.|..+|.++++.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5678888999999999999999887776421 11111 111 1345555533 589999999999987766
Q ss_pred ccCC-------------------------------CCeeEEEEecCCCEEEEEECCC-------------------eEEE
Q 005123 225 SAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDT-------------------TVKV 254 (713)
Q Consensus 225 ~~~~-------------------------------~~V~~l~fs~dg~~Las~s~Dg-------------------~I~i 254 (713)
.... .....+++.++..+++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 0112467888888888887766 3999
Q ss_pred EEcCCCeeEEEEccC--C-------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC----------
Q 005123 255 WDFARCQEERSLTGH--G-------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------- 312 (713)
Q Consensus 255 wDl~~~~~~~~l~~h--~-------~~V~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---------- 312 (713)
+|.++++.+..+... . ..+....+..+++ .|++++.+|.|+++|.++|+.+..+....
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999988777642 1 2222223333564 68899999999999999999885432111
Q ss_pred --CCe------------------------EEEEEcCCCCEEEEEE-----------------------------------
Q 005123 313 --NMV------------------------LCVKWNQNGNWVLTAS----------------------------------- 331 (713)
Q Consensus 313 --~~I------------------------~si~fspdg~~Latgs----------------------------------- 331 (713)
..+ ..++++++..++++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1257777766665421
Q ss_pred -CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 332 -KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 332 -~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
.++.|+.||+++++.+..+..... +....+.. .+.++++++.||.|++||.++++.+.++.........-+.+..++
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence 237899999999999887764432 22223333 567888889999999999998887666554322111234445566
Q ss_pred cEE
Q 005123 411 YLL 413 (713)
Q Consensus 411 ~~l 413 (713)
++.
T Consensus 513 ~~y 515 (668)
T 1kv9_A 513 RQY 515 (668)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-08 Score=104.11 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=156.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-------------------cCCCEEEEEEccCCCEEEEEe
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------------------HDHAIRSMVWSHNDNWMVSGD 205 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-------------------h~~~V~sl~~spdg~~L~sgs 205 (713)
....+++|++++++|+++..++.|..||..+.+....... ....+..|++.+++..|++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567789999998888888899999999876554322210 013578999997444566665
Q ss_pred CCCcEEEEEcCCCceeeeecc----CCCCeeEEEEec-CCCEEEEEEC-----------------CCeEEEEEcCCCeeE
Q 005123 206 DGGAIKYWQNNMNNVKANKSA----HKESVRDLSFCR-TDLKFCSCSD-----------------DTTVKVWDFARCQEE 263 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~----~~~~V~~l~fs~-dg~~Las~s~-----------------Dg~I~iwDl~~~~~~ 263 (713)
..+.|.++|..++........ ......++++.+ +++++++... ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 556688888776543222111 123578899999 8877666432 367899998776543
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eEEEEccCCCCeEEEEEcCCCCEEEEEEC--------
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASK-------- 332 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwDl~t~~--~~~~~~~h~~~I~si~fspdg~~Latgs~-------- 332 (713)
.... .......|+|++++++|+++ +.++.|.+||+.... ....+....+ ...+++.++|+++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 3322 22346689999999866665 456889999987521 1222221223 788999999987666544
Q ss_pred --CCeEEEEECCCCeeEEEeecCC----CCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 333 --DQIIKLYDIRAMKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 333 --Dg~I~IwDl~t~~~l~~~~~h~----~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.+.|.++|.. ++.+..+.... ..++++++. +++++++...++.|.++++...
T Consensus 257 ~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 257 RVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred CCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 4678888874 77777665442 356777763 5677777777888999987543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-07 Score=109.51 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=182.2
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-------cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...|.++....++. |.+++.++-|.+||..+.+....... ....|.++....++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 46788998888776 55555554599999887655433221 135699999988777555 4445 48889987
Q ss_pred CCceeeeec-------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------CCCceEEEEEcCCC
Q 005123 217 MNNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSVDWHPTK 282 (713)
Q Consensus 217 ~~~~~~~~~-------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~sl~~spdg 282 (713)
++....... .....|.++....++. |.+|+.++-|.+||..+.... .+.. ....|.++..+.++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 776544321 1235799999888776 556777777999987554322 2211 23569999998877
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEcc--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee---
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--- 351 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--- 351 (713)
+ |.+|+.++-|.+||..+++....... ....|.++....++++|.+|+.++-|.+||.++++......
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 6 66678777899999887654332211 23578999998888867778887789999998766433221
Q ss_pred -cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec------ccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 352 -GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------VHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 352 -~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~------~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
.....|.++.... ++++++.. . +.|.+||..++.. ..... .....|.++..+.++.+.++..+.|.+|+
T Consensus 448 ~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~ 523 (795)
T 4a2l_A 448 QLVNENVYAILPDG-EGNLWLGT-L-SALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFK 523 (795)
T ss_dssp CCSCSCEEEEEECS-SSCEEEEE-S-SCEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEE
T ss_pred CcCCCeeEEEEECC-CCCEEEEe-c-CceeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEe
Confidence 2345789998876 55655544 4 4588898765432 12211 12367999999999866655336788887
Q ss_pred cCC
Q 005123 425 RNR 427 (713)
Q Consensus 425 ~~~ 427 (713)
.+.
T Consensus 524 ~~~ 526 (795)
T 4a2l_A 524 QEG 526 (795)
T ss_dssp EET
T ss_pred CCC
Confidence 643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=118.37 Aligned_cols=253 Identities=12% Similarity=0.088 Sum_probs=175.8
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEecc---------------------------------C------CCEEEEEEcc---
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAH---------------------------------D------HAIRSMVWSH--- 196 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h---------------------------------~------~~V~sl~~sp--- 196 (713)
+.+|+..|.|+|+-+-+.+.++.+... . +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 557788899999988877776654210 0 1122345555
Q ss_pred --CCCEEEEEeCC-CcEEEEEcCCCceeeeecc-CCCCeeEEEE-e-cCCCEEEEEEC------------------CCeE
Q 005123 197 --NDNWMVSGDDG-GAIKYWQNNMNNVKANKSA-HKESVRDLSF-C-RTDLKFCSCSD------------------DTTV 252 (713)
Q Consensus 197 --dg~~L~sgs~D-G~I~vwdl~~~~~~~~~~~-~~~~V~~l~f-s-~dg~~Las~s~------------------Dg~I 252 (713)
||++|+++..+ +.|.+.|+++.++...+.. .......+++ + ++++++++++. ++.|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 78888877654 5699999999987775533 2356888888 4 89999988852 4579
Q ss_pred EEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 005123 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--------------------------------------LV 294 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg--------------------------------------~I 294 (713)
.++|.++.+.+..+.... ....++++++++++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888776433 467788999999999988654 36
Q ss_pred EEEECCC--Cce-EEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------eEEEeecCCCCeE
Q 005123 295 KLWDAKS--GRE-LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK------------ELESFRGHRKDVT 358 (713)
Q Consensus 295 ~IwDl~t--~~~-~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~------------~l~~~~~h~~~V~ 358 (713)
.|.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .+..+. -.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence 6777776 444 344432 23567899999999988766 57799999999653 233332 345678
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCC---------CceEEEecccCCCe-----EEEEEcCCCcEEEE
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQVEIHNVHDNTV-----WDLAWHPIGYLLCS 415 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~---------~~~~~~~~~h~~~V-----~~l~~spdg~~laS 415 (713)
.++|++ ++..+++.-.|+.|.+||+.+. ...+..+..|-..- .++.+++||++|.+
T Consensus 335 h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 335 HTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred eEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 999999 5566677778999999999651 23444444443321 12245789988865
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-07 Score=95.42 Aligned_cols=217 Identities=7% Similarity=-0.033 Sum_probs=146.1
Q ss_pred ceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 005123 146 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~ 223 (713)
.+.+++|+++++.|+.+. .++.|.++|..+......+.........+++++++..|+.+. .++.|.+++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 478999999777666655 468999999887655444433335788999998776666554 567899999875443332
Q ss_pred eccCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDA 299 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl 299 (713)
..........+++++++..|+.+.. .+.|..+++..................++++++++.|+++. ..+.|.++|+
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 2222356789999997776666654 36888888764332222223345688999999877665554 4678999999
Q ss_pred CCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCC-CCeEEEEEeCC
Q 005123 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPF 365 (713)
Q Consensus 300 ~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~-~~V~sl~fsp~ 365 (713)
+.......+. .......+++. +..|+++. .++.|.++|..+++.+..+.... .....+++.++
T Consensus 197 ~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 197 AQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 8644333333 23345667664 45555555 56899999999999888876433 24677777773
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-08 Score=103.28 Aligned_cols=204 Identities=13% Similarity=0.077 Sum_probs=144.2
Q ss_pred eEEEEeccC--CCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeccCC-CCeeEEEEecCCCEEEEEE-CCCe
Q 005123 178 FEMILQAHD--HAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCS-DDTT 251 (713)
Q Consensus 178 ~~~~l~~h~--~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~fs~dg~~Las~s-~Dg~ 251 (713)
.+.++. |. .....++|++|+.++++.+. ++.|.++|+.+++.+..+.... .....+++. ++.|+.+. .++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 444453 33 24689999988644444443 5899999999999888764322 233455554 44555554 5789
Q ss_pred EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-----CCeEEEEEcCCCCE
Q 005123 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNW 326 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-----~~I~si~fspdg~~ 326 (713)
|.++|..+.+.+.++...... ...+++|++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. +++.
T Consensus 88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999998888533112 23344567777777778999999999988887775321 246788888 7755
Q ss_pred EEEEECCCeEEEEECCCCeeEEEeecC-------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 327 VLTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l~~~~~h-------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
++....++.|.+.|..+++.+..+... ......|+|++++.++++++...++|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555546789999999999998887632 1356899999966778888888889999887543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-07 Score=108.64 Aligned_cols=272 Identities=10% Similarity=0.125 Sum_probs=180.5
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
|.++....+++ |.+++.++-|..||..+.+..... ......|.++....++.+.+ ++.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88888888875 555676556999998776654321 12356788988877766554 4444448889988766544322
Q ss_pred c-------CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-------CCCceEEEEEcCCCCEEEEEeCC
Q 005123 226 A-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 226 ~-------~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~sgs~D 291 (713)
. ....|.++....++.+.+ |+.+ -|.+||..+.+....... ....|.+|..+.++. |.+|+.+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 1 235689998887777554 4455 589999877654433211 235799999998876 6667777
Q ss_pred CcEEEEECCCCceEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee--------cCCCC
Q 005123 292 SLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--------GHRKD 356 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~-------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--------~h~~~ 356 (713)
+-|.+||..+.+.. .+.. ....|.++....+|+ |.+|+.++-|.+||..+++...... .....
T Consensus 330 ~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 330 GGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp SCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred CCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 78999987654432 2211 245699999888877 5567777779999988765433221 12357
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec----ccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN----VHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
|.+++... ++++|..|+.++.|.+||.+++. ...+.. .....|.++....++.+.++..+.|.+|+.+.
T Consensus 408 v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~ 480 (795)
T 4a2l_A 408 IKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQ 480 (795)
T ss_dssp EEEEEEET-TTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTT
T ss_pred EEEEEEcC-CCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCC
Confidence 89998876 56646667777789999986654 222221 23467999999988876655446677887643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-09 Score=115.45 Aligned_cols=209 Identities=9% Similarity=0.003 Sum_probs=137.3
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCc
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~-------~~V~sl~~spdg~~L~sgs~--DG~ 209 (713)
.+++++|+++|+++. .++.|.+||..+++.+.++.... .....+++++||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999999886 36889999999999999986541 23568899999999998875 467
Q ss_pred EEE--EEcCCCceeeeeccC------------------CCCeeEEEE--------------------------ecCCCEE
Q 005123 210 IKY--WQNNMNNVKANKSAH------------------KESVRDLSF--------------------------CRTDLKF 243 (713)
Q Consensus 210 I~v--wdl~~~~~~~~~~~~------------------~~~V~~l~f--------------------------s~dg~~L 243 (713)
|.+ +|+.+ +..+... .+.+..+.+ ++++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88765 1111100 000000100 2223333
Q ss_pred EEEECCCeEEEEEcCCCe--eEEEEccC-------C---CceEEEEEcCCCCEEEEEeC-C--------CcEEEEECCCC
Q 005123 244 CSCSDDTTVKVWDFARCQ--EERSLTGH-------G---WDVKSVDWHPTKSLLVSGGK-D--------SLVKLWDAKSG 302 (713)
Q Consensus 244 as~s~Dg~I~iwDl~~~~--~~~~l~~h-------~---~~V~sl~~spdg~~L~sgs~-D--------g~I~IwDl~t~ 302 (713)
+..+. +.|.+.|+.+.. .+..+... . .....++++++++.|+++.. + +.+.++|+.+.
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33333 566666664322 11111100 0 11122789999998887643 2 35679999999
Q ss_pred ceEEEEccCCCCeEEEEEcCCCCE-EEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 303 RELCSFHGHKNMVLCVKWNQNGNW-VLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 303 ~~~~~~~~h~~~I~si~fspdg~~-Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
+.+.++... .....|+|++||++ +++.. .++.|.++|+.+++.+.++..... ...+++.
T Consensus 305 ~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 305 QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 988877533 36889999999985 55555 589999999999999998875443 3455554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-08 Score=99.31 Aligned_cols=194 Identities=7% Similarity=-0.019 Sum_probs=139.8
Q ss_pred CceEEEEEccCCCEEEEEE-C--CCcEEEEeCCCCceEEEEeccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCc
Q 005123 145 CSINRVLWTPTGRRLITGS-Q--SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~--dg~V~Iwd~~t~~~~~~l~~h~-~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~ 219 (713)
.....++|++|+ .|+.++ . ++.|.++|..+++.+..+.... .....+++. ++.|+ +.-.++.|.++|..+.+
T Consensus 21 ~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 21 AFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 346899999986 455544 2 5799999999999988876422 233355664 45555 44567899999999998
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.+..+..... ....+++|++.|+++..+++|.++|.++.+.+..+.... ..++.+.|. ++..++....++.|
T Consensus 98 v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 98 NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 8887754311 123455688888888788999999999988877765321 246788888 67555555567899
Q ss_pred EEEECCCCceEEEEccC-------------CCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCC
Q 005123 295 KLWDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLT-ASKDQIIKLYDIRAM 344 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h-------------~~~I~si~fspdg~~Lat-gs~Dg~I~IwDl~t~ 344 (713)
.+.|.++++.+..+... ....+.|+|+++++.|++ +....+|.+.|+...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999998887531 135689999999876665 446778888887643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-08 Score=114.62 Aligned_cols=252 Identities=9% Similarity=0.019 Sum_probs=161.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC----CCEEE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----~~V~s-l~~spdg~~L~sgs~------DG~I~vwdl~~~~~~~~~ 224 (713)
+..|++++.|+.|+.+|.++++.+-.+.... ..+.+ ... .+..+++++. ++.|..+|.++++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5678888899999999999999887665322 02221 111 1345565554 799999999999887665
Q ss_pred ccCCCC--------------------------------------eeEEEEecCCCEEEEEECC----------------C
Q 005123 225 SAHKES--------------------------------------VRDLSFCRTDLKFCSCSDD----------------T 250 (713)
Q Consensus 225 ~~~~~~--------------------------------------V~~l~fs~dg~~Las~s~D----------------g 250 (713)
...... ...+++.++...++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0235566666677666532 3
Q ss_pred eEEEEEcCCCeeEEEEccCC---------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC------
Q 005123 251 TVKVWDFARCQEERSLTGHG---------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK------ 312 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h~---------~~V~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~------ 312 (713)
.|..+|.++++.+..+.... ....-+....+++ .+++++.+|.|+++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 69999999999887765321 0111122223563 57788899999999999999887664221
Q ss_pred -------CCe--------------------------EEEEEcCCCCEEEEEE----------------------------
Q 005123 313 -------NMV--------------------------LCVKWNQNGNWVLTAS---------------------------- 331 (713)
Q Consensus 313 -------~~I--------------------------~si~fspdg~~Latgs---------------------------- 331 (713)
..+ ..++|+++..+|++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 011 2357888777777654
Q ss_pred ---------CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 332 ---------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 332 ---------~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
.++.|..||+++++.+.++.... .+.+..+.. .+.++++++.||.|++||.++++.+.++.........
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 34789999999999888776332 222222222 3566777899999999999988877666544322222
Q ss_pred EEEEcCCCc
Q 005123 403 DLAWHPIGY 411 (713)
Q Consensus 403 ~l~~spdg~ 411 (713)
-+.+..++.
T Consensus 511 p~~~~~~G~ 519 (571)
T 2ad6_A 511 PMTYSFKGK 519 (571)
T ss_dssp CEEEEETTE
T ss_pred eEEEEECCE
Confidence 233445553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-08 Score=111.47 Aligned_cols=194 Identities=9% Similarity=0.082 Sum_probs=129.6
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCceEEEEeccCCC-----------EEEEEEccCCCE----EEEEeCCCcEEEEEcCCC
Q 005123 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDHA-----------IRSMVWSHNDNW----MVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 156 g~~Latgs~-dg~V~Iwd~-~t~~~~~~l~~h~~~-----------V~sl~~spdg~~----L~sgs~DG~I~vwdl~~~ 218 (713)
+..|++++. ++.|+-+|. .+++.+-++...... ...+++++.+.. |++++.|+.|..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 899887766543211 123455433444 888889999999999999
Q ss_pred ceeeeeccCC----CCeeE-EEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCCCc---------------
Q 005123 219 NVKANKSAHK----ESVRD-LSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGWD--------------- 272 (713)
Q Consensus 219 ~~~~~~~~~~----~~V~~-l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~~~--------------- 272 (713)
+.+....... ..+.+ -.+. ++ .+++++ .++.|+.+|.++++.+-.+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9876654322 12221 1121 44 455544 3799999999999988776532211
Q ss_pred ----------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEccCCC
Q 005123 273 ----------------------V-KSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGHKN 313 (713)
Q Consensus 273 ----------------------V-~sl~~spdg~~L~sgs~D----------------g~I~IwDl~t~~~~~~~~~h~~ 313 (713)
+ ..+++.++..+|+.++.+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 135666777788887765 3799999999999887754221
Q ss_pred ---------CeEEEEEc-CCC---CEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 314 ---------MVLCVKWN-QNG---NWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 314 ---------~I~si~fs-pdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
...-+... .+| +.|+.++.+|.|+++|.++++.+..+.
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 11112222 467 467778899999999999999887664
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-09 Score=115.86 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=162.1
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCceEEEEecc-CCCEEEEEE-c-cCCCEEEEEe------------------CCCcEEE
Q 005123 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVW-S-HNDNWMVSGD------------------DGGAIKY 212 (713)
Q Consensus 155 dg~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~-s-pdg~~L~sgs------------------~DG~I~v 212 (713)
||++|++... ++.|.+.|+.+.++...+..- ...+..+++ + |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888776 456999999999988866543 356889998 5 8999999885 2457999
Q ss_pred EEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--------------------------------------eEEE
Q 005123 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--------------------------------------TVKV 254 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--------------------------------------~I~i 254 (713)
+|.++.++...+.... .-..++++++++++++++.+. .|.|
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998887775433 567788999999998888553 3666
Q ss_pred EEcCC--Cee-EEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eEEEEccCCCCeEEE
Q 005123 255 WDFAR--CQE-ERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGR------------ELCSFHGHKNMVLCV 318 (713)
Q Consensus 255 wDl~~--~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~------------~~~~~~~h~~~I~si 318 (713)
.|.++ ++. +..+. -.....++.++|||+++++++ .+.+|.++|+++.+ .+..+. -......+
T Consensus 259 ID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 66665 333 33333 223566899999999887776 47789999998653 222222 34567889
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCC----------CeeEEEeecCCCCe-----EEEEEeCCCCCEEEEEEC---CCc--
Q 005123 319 KWNQNGNWVLTASKDQIIKLYDIRA----------MKELESFRGHRKDV-----TALAWHPFHEEYFVSGSL---DGS-- 378 (713)
Q Consensus 319 ~fspdg~~Latgs~Dg~I~IwDl~t----------~~~l~~~~~h~~~V-----~sl~fsp~~~~~lasgs~---DG~-- 378 (713)
+|+++|...++...|+.|.+||+.+ .+.+.++..|-..- ..+.+++ ++++|+++.. |+.
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCcccccc
Confidence 9999994444666899999999976 55677776654321 1223467 6788877754 332
Q ss_pred --------EEEEEcCCC
Q 005123 379 --------IFHWLVGHE 387 (713)
Q Consensus 379 --------I~Iwd~~~~ 387 (713)
-.++|+..+
T Consensus 416 ~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCSSCCEEEEEEECSSS
T ss_pred CCCCCCCcceEEEcCCC
Confidence 178888443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-08 Score=97.80 Aligned_cols=182 Identities=8% Similarity=0.069 Sum_probs=131.9
Q ss_pred CceEEEEEccCCCEEEEEECCC--cEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEE-EeCCCcEEEEEcCCCce
Q 005123 145 CSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg--~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~s-gs~DG~I~vwdl~~~~~ 220 (713)
.-...+.|+ ++.++++.+.+| .|+++|+++++.+..+...... -..+++ +++.|+. .-.++.+.+||.++.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence 345788998 666666666665 8999999999999888754322 123444 4555554 44689999999999999
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVK 295 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I~ 295 (713)
+.++.... ....++.|+..|+.+..+++|.++|..+.+.+..+.... ..++.+.|. ++++.+..-.+..|.
T Consensus 120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 88876533 223344578888877778899999999988887765421 345678887 676555555688999
Q ss_pred EEECCCCceEEEEccC------------CCCeEEEEEcCCCCEEEEEECC
Q 005123 296 LWDAKSGRELCSFHGH------------KNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h------------~~~I~si~fspdg~~Latgs~D 333 (713)
+.|.++++.+..+... ....+.|+|+++++.|++.+..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999999998887532 2356899999988888877653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-08 Score=117.08 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=118.5
Q ss_pred CEEEEEEc-cCCCEEEEEe-CCC----cEEEEEcCCC-ceeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEE
Q 005123 188 AIRSMVWS-HNDNWMVSGD-DGG----AIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVW 255 (713)
Q Consensus 188 ~V~sl~~s-pdg~~L~sgs-~DG----~I~vwdl~~~-~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iw 255 (713)
.+...+|| |||++|+.+. .+| .|+++|+.++ +.+.. .......+++|++|++.|+....| ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 9999888543 333 4999999988 63211 111224578999999888877665 368888
Q ss_pred EcCCCee--EEEEc-cCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-eE--EEE-ccCCCCeEEEEEcCCCC
Q 005123 256 DFARCQE--ERSLT-GHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGR-EL--CSF-HGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 256 Dl~~~~~--~~~l~-~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~-~~--~~~-~~h~~~I~si~fspdg~ 325 (713)
++.+... ...+. .......++.|++|+++|+..+. ...|+++|+.++. .. ..+ ........++.|+. ++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~ 331 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS 331 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence 9877542 22332 22345678899999998887663 3468889998752 22 333 23344556666554 55
Q ss_pred EEEEEE-CC----CeEEEEECCCCeeEEE-eecCCC--CeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 326 WVLTAS-KD----QIIKLYDIRAMKELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 326 ~Latgs-~D----g~I~IwDl~t~~~l~~-~~~h~~--~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.|+..+ .+ ..|.++|+.+...... +..+.. .+..+.+. ++.++++...++..+||-
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 555443 33 3677888765322222 223333 34555554 566777888888655443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-08 Score=110.44 Aligned_cols=271 Identities=10% Similarity=0.086 Sum_probs=169.9
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCceEEEEeccCC-C----------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDH-A----------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 156 g~~Latgs~-dg~V~Iwd~-~t~~~~~~l~~h~~-~----------V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
+..|++++. ++.|+-+|. .+++.+-++..... . ...+++ ++..|++++.|+.|..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 889999999 89988776653221 0 012233 36688888899999999999998877
Q ss_pred eeccCC----CCeeE-EEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCc-------------------
Q 005123 223 NKSAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD------------------- 272 (713)
Q Consensus 223 ~~~~~~----~~V~~-l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~------------------- 272 (713)
...... ..+.+ ..+. ++ .+++++. ++.|+.+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 654322 02221 1121 34 4555554 789999999999988776532111
Q ss_pred -------------------eEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEccC--CC--
Q 005123 273 -------------------VKSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGH--KN-- 313 (713)
Q Consensus 273 -------------------V~sl~~spdg~~L~sgs~D----------------g~I~IwDl~t~~~~~~~~~h--~~-- 313 (713)
...++++++...|+.++.+ +.|..+|.++++.+..+... ..
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0235666766677776632 25999999999998877532 11
Q ss_pred -----CeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEEeecCC-------------CCe---------------
Q 005123 314 -----MVLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHR-------------KDV--------------- 357 (713)
Q Consensus 314 -----~I~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-------------~~V--------------- 357 (713)
...-+....+|+ .|++++.+|.|+++|.++++.+..+.... ..|
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 111122223674 57788899999999999999887665321 111
Q ss_pred -----------EEEEEeCCCCCEEEEEE-------------------------------------CCCcEEEEEcCCCCc
Q 005123 358 -----------TALAWHPFHEEYFVSGS-------------------------------------LDGSIFHWLVGHETP 389 (713)
Q Consensus 358 -----------~sl~fsp~~~~~lasgs-------------------------------------~DG~I~Iwd~~~~~~ 389 (713)
..++++++ ..+|++.+ .+|.|..||..+++.
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPE-SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp ESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred ECCCCccccCCCCceECCC-CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 23567773 44444432 357899999988776
Q ss_pred eEEEecccCCCeEEEE-EcCCCcEE-EEeCCcEEEEecCCCCCccc
Q 005123 390 QVEIHNVHDNTVWDLA-WHPIGYLL-CSNDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 390 ~~~~~~~h~~~V~~l~-~spdg~~l-aS~Dg~v~iWd~~~~~~~~~ 433 (713)
..+.... ..+.+.. ...++.++ ++.|+.|++||.+..+...+
T Consensus 457 ~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 457 KWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 5554332 2222222 22345444 44899999999866554443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-08 Score=99.52 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=130.9
Q ss_pred eEEEEeccCC--CEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeccCCCCee--EEEEecCCCEEEEEE-CCC
Q 005123 178 FEMILQAHDH--AIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHKESVR--DLSFCRTDLKFCSCS-DDT 250 (713)
Q Consensus 178 ~~~~l~~h~~--~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~~~~~~~~~V~--~l~fs~dg~~Las~s-~Dg 250 (713)
.+.++ .|.. ....|.|+ ++.++.+++.+| .|+++|+++++.+..+... .... .+++ +++.|+... .++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEE--eCCEEEEEEeeCC
Confidence 34445 3433 35788998 666666777666 8999999999988877543 3333 3444 455555554 488
Q ss_pred eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccC--C---CCeEEEEEcCCCC
Q 005123 251 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH--K---NMVLCVKWNQNGN 325 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h--~---~~I~si~fspdg~ 325 (713)
.+.+||.++.+.+.++.... .-..++ .|++.|+.+..++.|.++|..+.+.+.++... . ..++.+.|. +|+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999998887433 223444 45777777776788999999999988876532 1 335667886 776
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEeecC------------CCCeEEEEEeCCCCCEEEEE
Q 005123 326 WVLTASKDQIIKLYDIRAMKELESFRGH------------RKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l~~~~~h------------~~~V~sl~fsp~~~~~lasg 373 (713)
.++....+..|.+.|.++++.+..+... ....+.|+|+++.++++++|
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5555557889999999999998877642 13468999999555555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-08 Score=111.82 Aligned_cols=250 Identities=10% Similarity=0.007 Sum_probs=159.3
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCC----CEEE-EEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeecc
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----~V~s-l~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+|++++.|+.|+.+|.++++.+-....... .+.+ ..+. ++ .|++++ .+|.|+.+|.++++++..+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 388888999999999999998766653220 2221 1111 34 555554 379999999999988766543
Q ss_pred CCCC-------------------------------------e-eEEEEecCCCEEEEEECC----------------CeE
Q 005123 227 HKES-------------------------------------V-RDLSFCRTDLKFCSCSDD----------------TTV 252 (713)
Q Consensus 227 ~~~~-------------------------------------V-~~l~fs~dg~~Las~s~D----------------g~I 252 (713)
.... + ..+++.++..+++.++.+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2211 0 134566677777777665 389
Q ss_pred EEEEcCCCeeEEEEccCCCc---------eEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceEEEEccCC-------
Q 005123 253 KVWDFARCQEERSLTGHGWD---------VKSVDWH-PTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~~~---------V~sl~~s-pdg---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~------- 312 (713)
..+|.++++.+-.+...... ..-+... .++ +.|+.++.+|.|+++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 99999999988776543211 1112222 456 467778999999999999999887654211
Q ss_pred ------CCe--------------------------EEEEEcCCCCEEEEEE-----------------------------
Q 005123 313 ------NMV--------------------------LCVKWNQNGNWVLTAS----------------------------- 331 (713)
Q Consensus 313 ------~~I--------------------------~si~fspdg~~Latgs----------------------------- 331 (713)
..+ ..++++|+..+|++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 001 1356677666555431
Q ss_pred ----------CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCe
Q 005123 332 ----------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (713)
Q Consensus 332 ----------~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V 401 (713)
.++.|..||+++++.+....... .+..-.+.- .+.+++.++.||.|+.||.++++.+.+.........
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 34789999999999887775321 111111111 456777799999999999999887766654332222
Q ss_pred EEEEEcCCCc
Q 005123 402 WDLAWHPIGY 411 (713)
Q Consensus 402 ~~l~~spdg~ 411 (713)
.-+.+..+|+
T Consensus 519 ~P~~y~~~G~ 528 (599)
T 1w6s_A 519 YPMTYTHKGT 528 (599)
T ss_dssp CCEEEEETTE
T ss_pred ccEEEEeCCE
Confidence 3344555663
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-07 Score=105.75 Aligned_cols=254 Identities=10% Similarity=0.053 Sum_probs=160.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC----CEE-EEEEcc---CCC-EEEEEe------CCCcEEEEEcCCCce
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIR-SMVWSH---NDN-WMVSGD------DGGAIKYWQNNMNNV 220 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----~V~-sl~~sp---dg~-~L~sgs------~DG~I~vwdl~~~~~ 220 (713)
+..|++++.|+.|+.+|.++++.+-....... .+. +..+.. +++ .|++++ .++.|..+|.+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 56788899999999999999998876654321 111 111111 233 566654 378999999999987
Q ss_pred eeeeccCCCC-----------------------------------------eeEEEEecCCCEEEEEEC-----------
Q 005123 221 KANKSAHKES-----------------------------------------VRDLSFCRTDLKFCSCSD----------- 248 (713)
Q Consensus 221 ~~~~~~~~~~-----------------------------------------V~~l~fs~dg~~Las~s~----------- 248 (713)
+......... -..+++.++..++++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 7654321100 013456666677776663
Q ss_pred ---------C----CeEEEEEcCCCeeEEEEcc--CCC-------ceEEEEEc-CCCC---EEEEEeCCCcEEEEECCCC
Q 005123 249 ---------D----TTVKVWDFARCQEERSLTG--HGW-------DVKSVDWH-PTKS---LLVSGGKDSLVKLWDAKSG 302 (713)
Q Consensus 249 ---------D----g~I~iwDl~~~~~~~~l~~--h~~-------~V~sl~~s-pdg~---~L~sgs~Dg~I~IwDl~t~ 302 (713)
| +.|..+|.++++.+-.+.. |.. ...-+... .+++ .|+.++.+|.|+++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5899999999999887753 211 11112221 4564 7888999999999999999
Q ss_pred ceEEEEccCC--CCe-------------------------------------------EEEEEcCCCCEEEEEE------
Q 005123 303 RELCSFHGHK--NMV-------------------------------------------LCVKWNQNGNWVLTAS------ 331 (713)
Q Consensus 303 ~~~~~~~~h~--~~I-------------------------------------------~si~fspdg~~Latgs------ 331 (713)
+.+..+.... ... ..++++++..+|++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9887654321 000 1245666555555432
Q ss_pred ---------------------------CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 332 ---------------------------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 332 ---------------------------~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.++.|..||+++++.+.++..... +..-.... .+.+++.++.||.|+.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEET
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEEC
Confidence 257899999999998877764322 21111112 3567778999999999999
Q ss_pred CCCCceEEEecccCCCeEEEEEcCCCc
Q 005123 385 GHETPQVEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (713)
++++.+.+..........-+.|..+|+
T Consensus 515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 515 KSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCCEEEEecCCCCcccCceEEEECCE
Confidence 998877766543222222355666664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-07 Score=96.84 Aligned_cols=236 Identities=11% Similarity=0.028 Sum_probs=147.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-------------------cCCCCeeEEEEecCCCEEEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-------------------AHKESVRDLSFCRTDLKFCSCS 247 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-------------------~~~~~V~~l~fs~dg~~Las~s 247 (713)
....+++|.+++++|+++..++.|..||..+++...... .....+.++++.+++..|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678899998888888889999999887665432211 0113578899987444566666
Q ss_pred CCCeEEEEEcCCCeeEEEEcc----CCCceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCceE
Q 005123 248 DDTTVKVWDFARCQEERSLTG----HGWDVKSVDWHP-TKSLLVSGGK-----------------DSLVKLWDAKSGREL 305 (713)
Q Consensus 248 ~Dg~I~iwDl~~~~~~~~l~~----h~~~V~sl~~sp-dg~~L~sgs~-----------------Dg~I~IwDl~t~~~~ 305 (713)
..+.|.++|..+++....... .......+++.+ ++++.++... ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 666688898765432221111 123578899999 8876665432 367899998776543
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCe--eEEEeecCCCCeEEEEEeCCCCCEEEEEEC-------
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFHEEYFVSGSL------- 375 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs~------- 375 (713)
.... .......|+|++++++|+++ +.++.|++||+.... ....+..... ...+++++ +++++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTT
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCccccccc
Confidence 3222 22345679999999977666 456899999987421 1122211223 78899998 6677766654
Q ss_pred ---CCcEEEEEcCCCCceEEEeccc----CCCeEEEEEcCCCcEE-EE-eCCcEEEEecCCC
Q 005123 376 ---DGSIFHWLVGHETPQVEIHNVH----DNTVWDLAWHPIGYLL-CS-NDHTTKFWCRNRP 428 (713)
Q Consensus 376 ---DG~I~Iwd~~~~~~~~~~~~~h----~~~V~~l~~spdg~~l-aS-~Dg~v~iWd~~~~ 428 (713)
.+.|..+|.. ...+..+... ...++++++. ++.+. ++ .++.|.+++++..
T Consensus 256 ~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 256 GRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred CCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 3567777753 3333333322 2356777774 45444 44 7788888887543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-07 Score=101.25 Aligned_cols=277 Identities=10% Similarity=0.017 Sum_probs=169.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC---------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA---------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~---------V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.++.|+-+|.++++.+-++...... ...+++ .+..|++++.|+.|..+|.++++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 445666666455999999999887776543221 012223 356788888999999999999998776543
Q ss_pred CCC----Cee-EEEEecC---CC-EEEEEE------CCCeEEEEEcCCCeeEEEEccCCCce------------------
Q 005123 227 HKE----SVR-DLSFCRT---DL-KFCSCS------DDTTVKVWDFARCQEERSLTGHGWDV------------------ 273 (713)
Q Consensus 227 ~~~----~V~-~l~fs~d---g~-~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~~~V------------------ 273 (713)
... .+. .-.+..+ ++ .+++++ .++.|+.+|.++++.+-........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 221 111 1112212 23 555554 37899999999998876553211000
Q ss_pred -----------------------EEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEE
Q 005123 274 -----------------------KSVDWHPTKSLLVSGGK--------------------D----SLVKLWDAKSGRELC 306 (713)
Q Consensus 274 -----------------------~sl~~spdg~~L~sgs~--------------------D----g~I~IwDl~t~~~~~ 306 (713)
..++++++..+|++++. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 13456666777777663 2 579999999999988
Q ss_pred EEcc--CCC-------CeEEEEEc-CCCC---EEEEEECCCeEEEEECCCCeeEEEeecCCC--Ce--------------
Q 005123 307 SFHG--HKN-------MVLCVKWN-QNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK--DV-------------- 357 (713)
Q Consensus 307 ~~~~--h~~-------~I~si~fs-pdg~---~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~--~V-------------- 357 (713)
.+.. |.. ...-+... .+|+ .|++++.+|.|+++|.++++.+..+..... ..
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 8753 221 11112221 4674 788899999999999999998876654320 00
Q ss_pred -----------------------------EEEEEeCCCCCEEEEEE--------------------------------CC
Q 005123 358 -----------------------------TALAWHPFHEEYFVSGS--------------------------------LD 376 (713)
Q Consensus 358 -----------------------------~sl~fsp~~~~~lasgs--------------------------------~D 376 (713)
..+++++..+.+++... .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 12456663333333221 25
Q ss_pred CcEEEEEcCCCCceEEEecccCCCeEE-EEEcCCCcEE-EEeCCcEEEEecCCCCCcccccc
Q 005123 377 GSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLL-CSNDHTTKFWCRNRPGDTARDKF 436 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~~l-aS~Dg~v~iWd~~~~~~~~~~~~ 436 (713)
|.|..||+.+++.+.+..... .+.. .....++.++ ++.|+.++.||.+..+...+.+.
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 789999998887665544321 2221 1122345444 45899999999876665554433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-07 Score=94.69 Aligned_cols=179 Identities=10% Similarity=0.079 Sum_probs=129.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCe--eEEEEecCCCEEE-EEECCCeEEEEEcCCCeeE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--RDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEE 263 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V--~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~ 263 (713)
.....|.|+ ++.++++.+.+|.|+++|+++++.+..+ ..... ..+++ +++.|+ +.-.++.+.+||.++.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 335788887 4566667788899999999999988876 33333 33555 444444 4446889999999999999
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-----CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-----~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
.++.... .-..++ .|++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++++....+..|.+
T Consensus 130 ~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 130 RTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 8887432 223444 457888888778999999999999888775321 245777887 7765555556889999
Q ss_pred EECCCCeeEEEeecC-------------CCCeEEEEEeCCCCCEEEEEE
Q 005123 339 YDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 339 wDl~t~~~l~~~~~h-------------~~~V~sl~fsp~~~~~lasgs 374 (713)
.|.++++.+..+... ....+.|+|+++.+++++||-
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999998877532 135689999996667777663
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-06 Score=88.98 Aligned_cols=243 Identities=11% Similarity=0.007 Sum_probs=156.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~ 223 (713)
+..+|.+..++ .+|+.+. ...|+..++........+.. ...+..++|++.+..|+.+. ..+.|..++++.......
T Consensus 34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 34456665553 3454444 34588888877665554443 44588999998777666554 568899999887665444
Q ss_pred eccCCCCeeEEEEecCCCEE-EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CC-CcEEEEECC
Q 005123 224 KSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KD-SLVKLWDAK 300 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~L-as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~D-g~I~IwDl~ 300 (713)
..........+++...+..| ++-...+.|.+.++........+.........|++++.+..|+.+. .+ +.|..++++
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 44334566889998755555 4445567999999876544444444456789999998666555554 34 678888887
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I 379 (713)
.......+.......+.|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++-...+.|
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V 268 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeE
Confidence 5333222233345678999998776666554 56789999987543333333334556778873 46666776677788
Q ss_pred EEEEcCCCCceEE
Q 005123 380 FHWLVGHETPQVE 392 (713)
Q Consensus 380 ~Iwd~~~~~~~~~ 392 (713)
..++..++.....
T Consensus 269 ~~~~~~~G~~~~~ 281 (349)
T 3v64_C 269 NSANKFTGKNQEI 281 (349)
T ss_dssp EEEETTTCCSCEE
T ss_pred EEEEccCCCccEE
Confidence 8887545544333
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-06 Score=100.93 Aligned_cols=273 Identities=11% Similarity=0.076 Sum_probs=176.3
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---------~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
...|.++....+|. |.+|+.++-|..|+..+........ .....|.+++...++++ .+|+.++-|.+||
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEE
Confidence 45799999998886 6677777779999987655433211 12456999998877664 4556556688888
Q ss_pred cCCCceeeee---ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEe
Q 005123 215 NNMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 215 l~~~~~~~~~---~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs 289 (713)
..++...... ......|.++....++.+ .+++.++-|.++|..+++...... .....|.++....+++ |.+|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE
Confidence 7655433211 123457888888777664 456776779999987765432221 1346799999887775 55566
Q ss_pred CCCcEEEEECCCCceEEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec----CCCCeEEE
Q 005123 290 KDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTAL 360 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~~~~~~~h-----~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl 360 (713)
. +-|.+||.++++........ ...|.++....+|++. +|+.++-|..||.++.+.. .+.. ....|.++
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQI 544 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEE
Confidence 5 56999998876654433222 4678999998888754 4555444888998766533 3321 23568888
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc---cCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
.... ++.+.++ +.+|.|..||..+... ...... ....|.++..+.+|.+.++.++-|..|+.+
T Consensus 545 ~~d~-~g~lWi~-T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~ 610 (781)
T 3v9f_A 545 YRSS-KGQMWLA-TGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITS 610 (781)
T ss_dssp EECT-TSCEEEE-ETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETT
T ss_pred EECC-CCCEEEE-ECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECC
Confidence 8876 5555544 4466658888765542 222211 134688999999997777655557777754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.2e-07 Score=93.24 Aligned_cols=181 Identities=8% Similarity=0.007 Sum_probs=129.3
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCC-CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~-~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
.-...+.|+ ++.++++.+.+|.|+++|+++++.+..+ .... .-..+++. .+++.++.-.++.+.+||.++.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 334678887 4555666677889999999999988887 3222 12335553 234444556789999999999999888
Q ss_pred eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 224 ~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+..... -..++ .|++.|+.+..+++|.++|.++.+.+..+.... ..++.+.|. +|++++....+..|.+.|
T Consensus 132 i~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 765332 23444 578888888889999999999998887775422 245778887 676555555688999999
Q ss_pred CCCCceEEEEccC-------------CCCeEEEEEcCCCCEEEEEEC
Q 005123 299 AKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 299 l~t~~~~~~~~~h-------------~~~I~si~fspdg~~Latgs~ 332 (713)
.++++.+..+... ....+.|+|+++++.|++.+.
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999998877521 235789999997666665553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-06 Score=99.24 Aligned_cols=274 Identities=8% Similarity=-0.016 Sum_probs=173.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-------~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
..|.++....++. |.+++.++-|..||..+.+...... .....|.+|....++++.+. +.+ -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 5688888887775 5557766569999988765443211 12356999998877766554 444 588899877
Q ss_pred Cceeeeec-------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc--------------cCCCceEEE
Q 005123 218 NNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--------------GHGWDVKSV 276 (713)
Q Consensus 218 ~~~~~~~~-------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~--------------~h~~~V~sl 276 (713)
++...... .....|.++....++. |.+++..+-|.++|..+.+...... .....|.+|
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 65443221 1245688888877665 5556665668899987654322111 124579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc---------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE
Q 005123 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH---------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~---------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l 347 (713)
..+.++. |.+|+.++-|..|+..+........ .....|.++....+|+ |.+|+.++-|.+||..+++..
T Consensus 319 ~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 319 FQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred EEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE
Confidence 9998776 6677777789999987654332211 1235689998887776 556676667999998754332
Q ss_pred EEe---ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEEeCCcEEE
Q 005123 348 ESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSNDHTTKF 422 (713)
Q Consensus 348 ~~~---~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS~Dg~v~i 422 (713)
... ......|.++.... ++.+ ..|+.++.|.++|..++. ..... ......|.++....++.+.++..+-|.+
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~ 473 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFV 473 (781)
T ss_dssp CC-----CCCSBEEEEEECT-TSCE-EEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEE
T ss_pred EccCCCCCCCcceEEEEECC-CCCE-EEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECCCCCEEEEECCceEE
Confidence 111 12345688888875 4554 446776778888875543 12221 1234679999999888766654477888
Q ss_pred EecCC
Q 005123 423 WCRNR 427 (713)
Q Consensus 423 Wd~~~ 427 (713)
|+.+.
T Consensus 474 ~~~~~ 478 (781)
T 3v9f_A 474 IDLAS 478 (781)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 87654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-07 Score=111.30 Aligned_cols=239 Identities=9% Similarity=0.003 Sum_probs=136.5
Q ss_pred ceEEEEEc-cCCCEEEEEEC-CC----cEEEEeCCCC-ceEE-EEeccCCCEEEEEEccCCCEEEEEeCC-----CcEEE
Q 005123 146 SINRVLWT-PTGRRLITGSQ-SG----EFTLWNGQSF-NFEM-ILQAHDHAIRSMVWSHNDNWMVSGDDG-----GAIKY 212 (713)
Q Consensus 146 ~V~~v~~s-pdg~~Latgs~-dg----~V~Iwd~~t~-~~~~-~l~~h~~~V~sl~~spdg~~L~sgs~D-----G~I~v 212 (713)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|++|++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 68899999 99999886643 33 4999999988 6321 111 113468999999988876654 25778
Q ss_pred EEcCCCce--eeeec-cCCCCeeEEEEecCCCEEEEEEC---CCeEEEEEcCCCe-eE--EEEc-cCCCceEEEEEcCCC
Q 005123 213 WQNNMNNV--KANKS-AHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQ-EE--RSLT-GHGWDVKSVDWHPTK 282 (713)
Q Consensus 213 wdl~~~~~--~~~~~-~~~~~V~~l~fs~dg~~Las~s~---Dg~I~iwDl~~~~-~~--~~l~-~h~~~V~sl~~spdg 282 (713)
+++.++.. ...+. ........+.|++|+++|+..+. ...|+++|+.++. .. ..+. .......++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88877642 12222 22345678899999999887653 3468889987652 12 3332 234455666665444
Q ss_pred CEEEEEeCC----CcEEEEECCCCceEEE-EccCCC--CeEEEEEcCCCCEEEEEECCCe--EEEEEC-------CCCee
Q 005123 283 SLLVSGGKD----SLVKLWDAKSGRELCS-FHGHKN--MVLCVKWNQNGNWVLTASKDQI--IKLYDI-------RAMKE 346 (713)
Q Consensus 283 ~~L~sgs~D----g~I~IwDl~t~~~~~~-~~~h~~--~I~si~fspdg~~Latgs~Dg~--I~IwDl-------~t~~~ 346 (713)
.+++....+ ..|.++|+.+...... +..+.. .+..+++. ++.++++...++. |+++|+ .+++.
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~ 410 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG 410 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence 444444443 2577778765322222 222332 34555554 2334455666775 566675 33331
Q ss_pred EEEeecCC-CCeEEEEE----eCCCCCEEEEEECC---CcEEEEEcCCCC
Q 005123 347 LESFRGHR-KDVTALAW----HPFHEEYFVSGSLD---GSIFHWLVGHET 388 (713)
Q Consensus 347 l~~~~~h~-~~V~sl~f----sp~~~~~lasgs~D---G~I~Iwd~~~~~ 388 (713)
+..+.... ..+..+.+ +.++..++++.+.. ..|+.+|+.++.
T Consensus 411 ~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 411 LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33332111 22334432 33445566665554 356777775544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-06 Score=87.74 Aligned_cols=182 Identities=10% Similarity=0.050 Sum_probs=129.1
Q ss_pred CceEEEEEccCCCEEEEEECC--CcEEEEeCCCCceEEEEeccCCC-EEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 145 CSINRVLWTPTGRRLITGSQS--GEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~d--g~V~Iwd~~t~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
.-...+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... -..+++. ++++.++.-.++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 3466888875 4444455554 48999999999999888654322 1234443 2344445567899999999999998
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCC-----CceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~-----~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
.++...... ..| +.++..|+.+..+++|.++|.++.+.+..+.... ..++.+.|. +++.++....+..|.+
T Consensus 99 ~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 99 ARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 887654322 344 4577778877788999999999998887775422 356778877 5665555556789999
Q ss_pred EECCCCceEEEEccC-------------CCCeEEEEEcCCCCEEEEEEC
Q 005123 297 WDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 297 wDl~t~~~~~~~~~h-------------~~~I~si~fspdg~~Latgs~ 332 (713)
.|.++++.+..+... ....+.|+|+++++.|++.+.
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999999998877521 235689999998777776664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-05 Score=82.02 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=146.8
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC----CceeeeeccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM----NNVKANKSAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~----~~~~~~~~~~~~~V~ 232 (713)
+|+.+.. ..|+..|+.+.+....+. ....+..++|+++++.|+.++ .++.|..++++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444443 468999998877665554 345678999998776666555 458899999876 222222222334568
Q ss_pred EEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceEEEE-
Q 005123 233 DLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--SLVKLWDAKSGRELCSF- 308 (713)
Q Consensus 233 ~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--g~I~IwDl~t~~~~~~~- 308 (713)
.+++...+..|+ +-..++.|.++|+........+.........|++++.+..|+.+... +.|..++++. +....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 899986555554 44567899999987654443444344678899999866666655543 6788888864 333333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEe-ec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESF-RG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 309 ~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~-~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
...-...+.|+|++++..|+.+. ..+.|..+|++.. ....+ .. .......|++. ++.++++-...+.|..++.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 33445688999998777776655 5578999999743 23333 21 22446778874 4666777767788888887
Q ss_pred CCCCce
Q 005123 385 GHETPQ 390 (713)
Q Consensus 385 ~~~~~~ 390 (713)
.++...
T Consensus 237 ~~g~~~ 242 (316)
T 1ijq_A 237 LTGSDV 242 (316)
T ss_dssp TTCCCC
T ss_pred CCCcce
Confidence 555543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-07 Score=90.25 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=130.4
Q ss_pred eEEEEeccC--CCEEEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeeccCCCC-eeEEEEecCCCEEEE-EECCCe
Q 005123 178 FEMILQAHD--HAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCS-CSDDTT 251 (713)
Q Consensus 178 ~~~~l~~h~--~~V~sl~~spdg~~L~sgs~D--G~I~vwdl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las-~s~Dg~ 251 (713)
.+.++ -|+ .....+.|+. +.++.+.+.+ ..|+++|+.+++.+..+...... -..+++. ++.|+. .-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 34444 343 4467899974 4555566665 48999999999988876543321 1334443 444444 445889
Q ss_pred EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCC-----CCeEEEEEcCCCCE
Q 005123 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNW 326 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-----~~I~si~fspdg~~ 326 (713)
+.+||.++.+.+.++.... .-..++ .+++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999998887433 223444 456777777778999999999999888775322 345677776 6665
Q ss_pred EEEEECCCeEEEEECCCCeeEEEeecC-------------CCCeEEEEEeCCCCCEEEEEE
Q 005123 327 VLTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l~~~~~h-------------~~~V~sl~fsp~~~~~lasgs 374 (713)
++....+..|.+.|.++++.+..+... ....+.|+|+++.+++++||-
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555556889999999999998877522 135689999995555666653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-06 Score=90.11 Aligned_cols=225 Identities=8% Similarity=-0.000 Sum_probs=139.7
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~ 222 (713)
.....++|+++++++++-..++.|..||..+. ....+. ....+..+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56789999999986666667899999998753 333333 345788999999999666554332 46667777776543
Q ss_pred eecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee-EEEEc---------cCCCceEEEEEcCCCCEEEEEe-C
Q 005123 223 NKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT---------GHGWDVKSVDWHPTKSLLVSGG-K 290 (713)
Q Consensus 223 ~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~-~~~l~---------~h~~~V~sl~~spdg~~L~sgs-~ 290 (713)
.... .......+++..++..+++...++.|+++|..+++. +.... ......+.| ++++++|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 122334555554444444444588999999876432 21111 111234555 67777665554 5
Q ss_pred CCcEEEEECCC-Cce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE--EeecCCCCeEEEEEe--
Q 005123 291 DSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGHRKDVTALAWH-- 363 (713)
Q Consensus 291 Dg~I~IwDl~t-~~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--~~~~h~~~V~sl~fs-- 363 (713)
.+.|.+||++. ++. ...+.. ......++++++|+++++....+.|.++|.. ++... .+.......++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~ 265 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT 265 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence 67899999874 321 112211 1345678999999887777778899999976 55432 333334668999998
Q ss_pred -CCCCCEEEEEECC
Q 005123 364 -PFHEEYFVSGSLD 376 (713)
Q Consensus 364 -p~~~~~lasgs~D 376 (713)
+ +++.|++++..
T Consensus 266 ~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 266 EG-DCTAIYVVTNG 278 (306)
T ss_dssp TT-TTTEEEEEECT
T ss_pred cC-CCCEEEEECCC
Confidence 6 44444444433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.5e-06 Score=88.32 Aligned_cols=242 Identities=12% Similarity=0.014 Sum_probs=157.8
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeec
Q 005123 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~ 225 (713)
.+|.+..+ ..+|+.+. ...|+.+++.+......+.. ...+..++|.+.+..|+.+. ..+.|..++++.......+.
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 34555555 33444444 45689999887666555543 45688999997766666554 56789999988776544444
Q ss_pred cCCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-C-CcEEEEECCCC
Q 005123 226 AHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-D-SLVKLWDAKSG 302 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-D-g~I~IwDl~t~ 302 (713)
........|++.+.+..|+ +-...+.|.+.++........+.........|++++.+..|+.+.. + +.|..++++..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 3444567889987555554 4445678999888755444444444567899999987666665543 3 67888888754
Q ss_pred ceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE
Q 005123 303 RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 303 ~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
.............+.|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++-...+.|..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEE
Confidence 44333343445678999998766666554 56789999987543333333334556788883 4667777777788888
Q ss_pred EEcCCCCceEEE
Q 005123 382 WLVGHETPQVEI 393 (713)
Q Consensus 382 wd~~~~~~~~~~ 393 (713)
++..++.....+
T Consensus 314 ~~~~~G~~~~~i 325 (386)
T 3v65_B 314 ANKFTGKNQEII 325 (386)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCcceEEE
Confidence 885555544333
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-05 Score=85.81 Aligned_cols=232 Identities=5% Similarity=-0.094 Sum_probs=146.5
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEcc
Q 005123 190 RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTG 268 (713)
Q Consensus 190 ~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~ 268 (713)
+|.+..+ ..+|+.+. ...|+..+++......... ....+..++|++.+..|+.+. ..+.|+.+++........+..
T Consensus 37 ~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 37 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred ccccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3444444 33444443 3557778877665544433 345588999997666666554 578899999877654444443
Q ss_pred CCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCe
Q 005123 269 HGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KD-QIIKLYDIRAMK 345 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~D-g~I~IwDl~t~~ 345 (713)
.......++++..+..| ++-...+.|.+++++.......+.........|++++.+.+|+... .+ +.|..+|++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 44566789998755544 5555567899999876544444444446688999998666666554 44 789999887433
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEe
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWC 424 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd 424 (713)
....+...-.....|+|+++++.++++-+..+.|..+|++... ...+..........|++..+..+++. ..+.|..++
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 2222222334578999998566666676677889999986543 33333333456778888554444454 556666665
Q ss_pred c
Q 005123 425 R 425 (713)
Q Consensus 425 ~ 425 (713)
.
T Consensus 273 ~ 273 (349)
T 3v64_C 273 K 273 (349)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-05 Score=84.28 Aligned_cols=233 Identities=10% Similarity=-0.007 Sum_probs=154.1
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCC----ceeeeeccCCCCe
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMN----NVKANKSAHKESV 231 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~----~~~~~~~~~~~~V 231 (713)
.+|+.+. ...|+..|+........+. ....+..|+|++.+..|+.++ .++.|+.++++.. .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3455544 4679999988776555444 456788999998777776665 4678888888752 2333333344567
Q ss_pred eEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEE
Q 005123 232 RDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSF 308 (713)
Q Consensus 232 ~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~ 308 (713)
..|++...+..|+ +-...+.|.+.|++.......+.........|++++.+.+|+.+.. .+.|...+++.......+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 8899987555444 4455789999998766555555545566899999997666666553 367999998754444444
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 309 ~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...-...+.|++++++..|+.+. ..+.|..+|++.......+.. ......+|++. ++.++++-...+.|..+|..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 44446789999998777777665 467899999875433222222 23445677773 46677777777889888866
Q ss_pred CCCceEEE
Q 005123 386 HETPQVEI 393 (713)
Q Consensus 386 ~~~~~~~~ 393 (713)
++.....+
T Consensus 320 ~G~~~~~i 327 (400)
T 3p5b_L 320 TGSDVNLL 327 (400)
T ss_dssp SCCCCEEE
T ss_pred CCCceEEE
Confidence 66544444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-05 Score=82.14 Aligned_cols=224 Identities=8% Similarity=-0.037 Sum_probs=141.1
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCC----CeeEEEEccCCCceE
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR----CQEERSLTGHGWDVK 274 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~----~~~~~~l~~h~~~V~ 274 (713)
+|+.+. ...|+..|+++.+....+. ....+.+++|++++..|+.+. .++.|..+|+.. ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344444 3568889998876655443 345688999998766665554 468999999875 222233333334668
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeeEEEe-
Q 005123 275 SVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESF- 350 (713)
Q Consensus 275 sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D--g~I~IwDl~t~~~l~~~- 350 (713)
.|+++..+..| ++-..++.|.++|++.......+.........+++++++.+|+.+... +.|..+++.. +....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 89998755544 454567889999987544333333344568899999876666665543 6888888863 333333
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEE-eCCcEEEEecCC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNR 427 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~ 427 (713)
...-.....|+|++++++++++-+..+.|..+|++.... ..+... .......|++..+..+++. ..+.|..++...
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence 223456789999985566666666778999999864332 223221 2245678888654444444 567777777543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.74 E-value=7.2e-06 Score=85.59 Aligned_cols=216 Identities=11% Similarity=0.061 Sum_probs=134.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC--eEEEEEcCCCeeEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~~~ 264 (713)
.....++|+++++++++...++.|..||.+.. ....+ ........+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56788999999887666667899999987754 32222 2345788999999998666554432 47777877766543
Q ss_pred EEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEc---------cCCCCeEEEEEcCCCCEEEEEE-C
Q 005123 265 SLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFH---------GHKNMVLCVKWNQNGNWVLTAS-K 332 (713)
Q Consensus 265 ~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~---------~h~~~I~si~fspdg~~Latgs-~ 332 (713)
.... .......++...++..+++-..++.|+++|..+++. +.... ......+.| ++++++|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3321 222345556555554444444588999999876532 21111 111234555 77887776655 5
Q ss_pred CCeEEEEECCC-Cee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE--ecccCCCeEEEEEc
Q 005123 333 DQIIKLYDIRA-MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI--HNVHDNTVWDLAWH 407 (713)
Q Consensus 333 Dg~I~IwDl~t-~~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~--~~~h~~~V~~l~~s 407 (713)
.+.|.+||+.. ++. ...+.. ......+++++ +++++++....+.|.++|.. +. ...+ ........++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CC-EEEEECGGGTCTTEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CC-EEEEeecccccCCceEEEEe
Confidence 67899999874 321 122211 13456788888 67888877778899999864 32 2222 22223568999998
Q ss_pred ---CCC
Q 005123 408 ---PIG 410 (713)
Q Consensus 408 ---pdg 410 (713)
+++
T Consensus 264 g~~~d~ 269 (306)
T 2p4o_A 264 QTEGDC 269 (306)
T ss_dssp CSTTTT
T ss_pred cccCCC
Confidence 675
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.4e-06 Score=82.93 Aligned_cols=204 Identities=13% Similarity=0.150 Sum_probs=138.4
Q ss_pred EEEEeeCCCCCceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 135 FVHTSLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 135 ~~~~~l~~H~~~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
+..+.+.+-.+.+..++|+++++.|+ +...++.|...|.. ++.+..+.. -......|++..++.++++.-.++.+.+
T Consensus 17 ~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 17 IDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp EEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred EeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 34457778878899999999876555 57778899999998 777777743 2356888999888876666666788999
Q ss_pred EEcCCCce---eeeec------cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCeeEEEEc-------cCCCce
Q 005123 213 WQNNMNNV---KANKS------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLT-------GHGWDV 273 (713)
Q Consensus 213 wdl~~~~~---~~~~~------~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~~~~~l~-------~h~~~V 273 (713)
+++..... +.... ..+.....|+|+++++.|+++.+.....||.+. ....+..+. .....+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 88765442 11111 234457899999999888877776555555553 111122221 133467
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 274 KSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 274 ~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~---------~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
.+|++++.. ++++....+..|.++|.+ ++.+..+.-.. ..-..|+|.++|+ |++.++-+.+++|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 899999954 455666667788999966 55555543221 2568899999998 555577777777654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-06 Score=92.68 Aligned_cols=236 Identities=9% Similarity=0.066 Sum_probs=143.8
Q ss_pred ceEEEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC-C----cEEEEEcCCCc
Q 005123 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-G----AIKYWQNNMNN 219 (713)
Q Consensus 146 ~V~~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-G----~I~vwdl~~~~ 219 (713)
....|+|++ ++..|+++...+.|+++|.++........ .......|+|++++++|+++... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 567899998 46667777666889999998766554443 45668899999999977766642 2 2333333 232
Q ss_pred ee--eeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEE-eCCCcE
Q 005123 220 VK--ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSG-GKDSLV 294 (713)
Q Consensus 220 ~~--~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sg-s~Dg~I 294 (713)
.. ..+. ......++++++ ++.++++-..++.|..||........... ........|+|++++++|+++ ..++.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 1221 234567888999 66666666677899999998765532222 122457899999999955554 456789
Q ss_pred EEEECCC--Cce--EEEEccC---------------CCCeE-EEEEc--------CCCCEEEEEECCCeEEEEECCCCee
Q 005123 295 KLWDAKS--GRE--LCSFHGH---------------KNMVL-CVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 295 ~IwDl~t--~~~--~~~~~~h---------------~~~I~-si~fs--------pdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
..+|.+. ++. +..+.+. -..-. .+++. .+++++++-..++.|+.+|. +++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence 9987653 221 1222211 01122 44443 33555555556678888884 4544
Q ss_pred EEEeec----C----C---------CCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 347 LESFRG----H----R---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 347 l~~~~~----h----~---------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...... . + .....|+++++++.++++-..+..|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 332211 0 1 1467888887446666666666778777653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-05 Score=86.70 Aligned_cols=231 Identities=5% Similarity=-0.099 Sum_probs=147.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccC
Q 005123 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGH 269 (713)
Q Consensus 191 sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h 269 (713)
|.+..+ ..+|+.+. ...|+.+++.......... ....+..++|.+.+..|+.+ ...+.|+.+++........+...
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred ECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 444333 33444443 4678888887766544443 34568899999766655555 45788999998876554444444
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCee
Q 005123 270 GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-D-QIIKLYDIRAMKE 346 (713)
Q Consensus 270 ~~~V~sl~~spdg~~L-~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-D-g~I~IwDl~t~~~ 346 (713)
......|++++.+..| ++-...+.|.+++++.......+.........|++++++.+|+.+.. + +.|..+|+.....
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 4556788898755544 44455678999998755444444444467899999987766665553 3 6888888874433
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEec
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~ 425 (713)
...+...-.....|+|++++++++++-+..+.|..+|++... ...+..........|++..+..+++. ..+.|..++.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence 333333345578999998566666776677889999986433 33333333456778888555455554 5666766663
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=0.0001 Score=77.84 Aligned_cols=267 Identities=6% Similarity=-0.015 Sum_probs=149.7
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe----ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~----~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
....+.+|.|..++..++ ++.+|.|... ...++.-..+. .....+.+|.|.+ ++ +++++.++.|.. ..+.+
T Consensus 34 ~~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWL-VGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp CSSCEEEEEESSSSCEEE-EETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 345799999988887777 4567765333 33332222221 1244688999975 44 444455664443 23333
Q ss_pred ceeeeec---cCCCCeeEEEEecCCCEEEEEECCCeEEE-EEcCCCee-EEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 219 NVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 219 ~~~~~~~---~~~~~V~~l~fs~dg~~Las~s~Dg~I~i-wDl~~~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+.-.... .....+..|.+..++..++++ .++.|.. .| .++. ..........+.++++.+++.+++++.. +.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SS
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-Cc
Confidence 3222221 123457788877776655544 5565432 23 2222 2222334567899999998887776654 54
Q ss_pred EEE-EEC--CCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec----CCCCeEEEEEeCCC
Q 005123 294 VKL-WDA--KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFH 366 (713)
Q Consensus 294 I~I-wDl--~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~----h~~~V~sl~fsp~~ 366 (713)
|.. +|- .+.+.+. ......+..+.++++++++ +++.+|.|++.+.+.++....+.. ....+.++++.+ +
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~ 260 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-P 260 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-S
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-C
Confidence 443 442 2333331 2345678899999888755 555688888775333443333321 224588999987 5
Q ss_pred CCEEEEEECCCcEEEEEcCCCCceEEEec--ccCCCeEEEEEcCCCcEEEE-eCCcEEEEe
Q 005123 367 EEYFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCS-NDHTTKFWC 424 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~laS-~Dg~v~iWd 424 (713)
+.+++++ .+|.| ++..+.+..-..+.. .....+.++.|..++.+++. .+|.|.-++
T Consensus 261 ~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 261 NEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp SCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred CEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 6665554 46776 344433433222221 12356888989777665554 888766554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.9e-07 Score=105.17 Aligned_cols=264 Identities=11% Similarity=0.030 Sum_probs=150.4
Q ss_pred EEEEcc-CCCEEEEEECCC-----------cEEEEeCCCCceEE--EEe-ccCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 005123 149 RVLWTP-TGRRLITGSQSG-----------EFTLWNGQSFNFEM--ILQ-AHDHAIRSMVWSHNDNWMVSGDD-GGAIKY 212 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg-----------~V~Iwd~~t~~~~~--~l~-~h~~~V~sl~~spdg~~L~sgs~-DG~I~v 212 (713)
++++.+ ++++++.|+.+. .+.+||..+.+... .+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 888888887643 58899988765432 222 23333445777889999999884 468999
Q ss_pred EEcCCCceeeeeccCCCC-eeEEEEecCCCEEEEEE-CC-----CeEEEEEcCCCeeEEEE----ccCCCceEEEEEcCC
Q 005123 213 WQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCS-DD-----TTVKVWDFARCQEERSL----TGHGWDVKSVDWHPT 281 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las~s-~D-----g~I~iwDl~~~~~~~~l----~~h~~~V~sl~~spd 281 (713)
||..+++-...-...... -.++++.++++.++.|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998877543322222222 23455566889888888 34 57999999876533320 000000000112234
Q ss_pred CCEEEEEeCC---------CcEEEEECCCCceEEEEccCC---------CCeEEEEEcC-CCCEEEEEECCC--------
Q 005123 282 KSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQ-NGNWVLTASKDQ-------- 334 (713)
Q Consensus 282 g~~L~sgs~D---------g~I~IwDl~t~~~~~~~~~h~---------~~I~si~fsp-dg~~Latgs~Dg-------- 334 (713)
++.++.++.| ..+.+||..+........... ..-.++.|.. +++++++|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 356788888765443322111 1234455543 677788887532
Q ss_pred ---eEEEEECCCCeeEEEe--ecCCCC-eEEEEEeCCCCCEEEEEECC-----------CcEEEEEcCCCCceEEEec--
Q 005123 335 ---IIKLYDIRAMKELESF--RGHRKD-VTALAWHPFHEEYFVSGSLD-----------GSIFHWLVGHETPQVEIHN-- 395 (713)
Q Consensus 335 ---~I~IwDl~t~~~l~~~--~~h~~~-V~sl~fsp~~~~~lasgs~D-----------G~I~Iwd~~~~~~~~~~~~-- 395 (713)
.|.+||..+.+-.... ...... -.+++..+ ++++++.|+.+ ..+.+||..+.. .....
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~ 506 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPN 506 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCC
Confidence 6888888765543332 222222 23445556 68888888754 468999986543 11111
Q ss_pred -ccCCCeEEEEEcCCCcEEEE
Q 005123 396 -VHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 396 -~h~~~V~~l~~spdg~~laS 415 (713)
.......+..+.+++.+++.
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~ 527 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNG 527 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEE
T ss_pred CCccccccHhhcCCCcEEEec
Confidence 11122234456678877654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-05 Score=81.70 Aligned_cols=226 Identities=10% Similarity=0.006 Sum_probs=144.9
Q ss_pred CCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee-eeeccCCCCeeEEEEecCC
Q 005123 165 SGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVK-ANKSAHKESVRDLSFCRTD 240 (713)
Q Consensus 165 dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~-~~~~~~~~~V~~l~fs~dg 240 (713)
...|+.+|+.... ....+. ....+..++|.+.+..|+.+. .++.|..++++..... ..+...-.....+++...+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4578899988763 222222 234567899998766666554 5678999998766421 2222233457789998755
Q ss_pred CEE-EEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEccCCCCeEE
Q 005123 241 LKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 241 ~~L-as~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
..| ++-...+.|.++++........+.........|++++.+.+|+.+.. .+.|..++++.......+...-..-+.
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 544 44455789999998765444444445567889999987666666653 578888888743333333333456789
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 318 VKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 318 i~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
|+|++++..|+.+. ..+.|..+|++.......+.........+++. .+.++++-...+.|..++..++.....+
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 99999777666654 56789999987433222223234556778875 4566677666788988888666544333
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-05 Score=88.87 Aligned_cols=236 Identities=10% Similarity=0.082 Sum_probs=144.5
Q ss_pred CceEEEEEccC--CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC----c-EEEEEcCC
Q 005123 145 CSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG----A-IKYWQNNM 217 (713)
Q Consensus 145 ~~V~~v~~spd--g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG----~-I~vwdl~~ 217 (713)
.....|+|+++ +..|+++...+.|+.+|..++..... .........|+|+++++ |+++...+ . +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 45679999984 45666665558899999987765544 33456689999999999 55555422 1 23333222
Q ss_pred Cce-eeeeccCCCCeeEEEEec-CCCEEEEEECCCeEEEEEcCCCeeEEEE-c-cCCCceEEEEEcCCCCEEEEEe-CCC
Q 005123 218 NNV-KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-T-GHGWDVKSVDWHPTKSLLVSGG-KDS 292 (713)
Q Consensus 218 ~~~-~~~~~~~~~~V~~l~fs~-dg~~Las~s~Dg~I~iwDl~~~~~~~~l-~-~h~~~V~sl~~spdg~~L~sgs-~Dg 292 (713)
... ...+ ........+++++ ++.++++-..++.|+.+|..++.....+ . .....-..|+|++++++|+++. ..+
T Consensus 217 ~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 0111 1234557788998 5665556556788999998866652222 2 1222335799999999555554 567
Q ss_pred cEEEEECC--CCce--EEEEccC---------------CCCeEEEEE---------cCCCCEEEEEECCCeEEEEECCCC
Q 005123 293 LVKLWDAK--SGRE--LCSFHGH---------------KNMVLCVKW---------NQNGNWVLTASKDQIIKLYDIRAM 344 (713)
Q Consensus 293 ~I~IwDl~--t~~~--~~~~~~h---------------~~~I~si~f---------spdg~~Latgs~Dg~I~IwDl~t~ 344 (713)
.|+.+|.+ +++. ...+.+. -.....+++ ..+++++++-..++.|+++|. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2321 1222211 123567888 667776666667788999985 45
Q ss_pred eeEEEeecC------------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 345 KELESFRGH------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 345 ~~l~~~~~h------------------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
... ++.+. -.....|++++.++.++++-..+..|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 433 33221 12367788884366666666667777777653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-05 Score=81.32 Aligned_cols=200 Identities=11% Similarity=0.147 Sum_probs=134.1
Q ss_pred EEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 181 ILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 181 ~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
.+.+-.+.+..++|+++++.|+ +...++.|...|.. ++++..+. ........|++..++.++++.-.++.|.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445567899999999876555 57788899999988 77766653 223578899999888766666567889999886
Q ss_pred CCee---EEEEc------cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceEEEEc-------cCCCCeEEEE
Q 005123 259 RCQE---ERSLT------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---SGRELCSFH-------GHKNMVLCVK 319 (713)
Q Consensus 259 ~~~~---~~~l~------~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~---t~~~~~~~~-------~h~~~I~si~ 319 (713)
.... +.... ........|+|+++++.|+++.+.....||.++ ....+..+. .....+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 123456899999998888887766555555553 111222221 1234578999
Q ss_pred EcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCC---------CCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 320 WNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 320 fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~---------~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+++. +++++....++.|.++|.. ++.+..+.... ..--.|+|.+ +++++++ ++.+.+++|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9995 5566666677889999976 55665554332 2568999999 6775555 67666666643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-05 Score=81.27 Aligned_cols=225 Identities=8% Similarity=-0.046 Sum_probs=145.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCC----eeEEEEccCCCce
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC----QEERSLTGHGWDV 273 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~----~~~~~l~~h~~~V 273 (713)
.+|+.+. ...|+..+++........ .....+..|+|+..+..|+.+. .++.|+.+++... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3455444 467888888876654443 3456788999998766666554 5678999998652 2333444345678
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEEe
Q 005123 274 KSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 350 (713)
Q Consensus 274 ~sl~~spdg-~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~~ 350 (713)
..|+++..+ +++++-...+.|.+.|++.......+.........|++.+.+.+|+.... .+.|...+++.......+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 899998744 44455556788999998865544444444556889999997667766653 368999998744333333
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 351 ~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
...-.....|++++++++++++-+..+.|..+|++.... ..+... .......|++..+..+++. ..+.|..++..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence 333457899999985566666666678899999865433 233222 2345667888665555554 56777777643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-05 Score=80.71 Aligned_cols=222 Identities=5% Similarity=-0.033 Sum_probs=140.6
Q ss_pred CCcEEEEEcCCCc-eeeeeccCCCCeeEEEEecCCCEEEEE-ECCCeEEEEEcCCCee-EEEEccCCCceEEEEEcCCCC
Q 005123 207 GGAIKYWQNNMNN-VKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 207 DG~I~vwdl~~~~-~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~spdg~ 283 (713)
...|+.++++... ...........+..++|...+..|+.+ ..++.|..+++..... ...+.........++++..+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678888888763 111122223456789999865555544 4567899999876532 222232334577889987444
Q ss_pred -EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeeEEEeecCCCCeEEE
Q 005123 284 -LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGHRKDVTAL 360 (713)
Q Consensus 284 -~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~--Dg~I~IwDl~t~~~l~~~~~h~~~V~sl 360 (713)
++++-...+.|.+++++.......+.........|++.+.+.+|+.+.. .+.|..++++.......+...-..-..|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 4455556778999998754433334345566889999987666766653 5789888887432222222233456899
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCCC
Q 005123 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPG 429 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~ 429 (713)
+|++++++++++-+..+.|..+|++.... ..+..........|++..++.+.+. ..+.|..++....+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 99986666666666778899999864333 3333333456778888766555554 66777777764433
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-05 Score=86.65 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=141.7
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-C----eEEEEEcCCCe
Q 005123 188 AIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T----TVKVWDFARCQ 261 (713)
Q Consensus 188 ~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-g----~I~iwDl~~~~ 261 (713)
....|+|++ ++..|+++...+.|+.+|++++.+.... ........|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889997 4666777766688999999877655443 345678899999999977666642 1 34444432211
Q ss_pred e-EEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 005123 262 E-ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTAS-KDQIIK 337 (713)
Q Consensus 262 ~-~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs-~Dg~I~ 337 (713)
. ...+. .......+++++ ++.++++-..++.|..||..++....... ........|+|++++++|+++. .++.|+
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 12222 234567889999 66666666677899999998765422222 2234578899999999665554 667899
Q ss_pred EEECCC--Cee--EEEeecC---------------CCCeE-EEEEeC-------CCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 338 LYDIRA--MKE--LESFRGH---------------RKDVT-ALAWHP-------FHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 338 IwDl~t--~~~--l~~~~~h---------------~~~V~-sl~fsp-------~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
++|.+. ++. +..+.+. -..-. .++... .++.++++-...+.|+.++. ++ ..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-~v 373 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-RV 373 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS-EE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC-cE
Confidence 987653 221 1222211 01122 444432 13455555555677888873 22 22
Q ss_pred EEEecc----c-------------CCCeEEEEEcC-CCcEEEE--eCCcEEEEecC
Q 005123 391 VEIHNV----H-------------DNTVWDLAWHP-IGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 391 ~~~~~~----h-------------~~~V~~l~~sp-dg~~laS--~Dg~v~iWd~~ 426 (713)
..+... . -..-+.|++++ ++.++++ ..+.|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 222211 0 12578999998 5766655 56777777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.5e-05 Score=87.70 Aligned_cols=232 Identities=10% Similarity=-0.009 Sum_probs=148.7
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCC----ceeeeeccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMN----NVKANKSAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~----~~~~~~~~~~~~V~ 232 (713)
+|+.+ ....|+..++...+....+. ....+..|+|...+..|+.+. ..+.|+.++++.. .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44443 34568888888766554444 456778999998666666554 4577888888753 22333333455678
Q ss_pred EEEEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEc
Q 005123 233 DLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 233 ~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~ 309 (713)
.|++...+..|+.+ ...+.|.+.++........+.........|++++.+.+|+.+.. .+.|.+.+++.......+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 89998777555544 45789999998765554444445567899999997666666653 2679999987554444444
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 310 GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
......+.|++++.+..|+.+. ....|..+|+........+... -....+|++. +++++++-...+.|...|..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 4456789999998766676664 4568999998754433333321 2345566664 345666666667787777655
Q ss_pred CCceEEE
Q 005123 387 ETPQVEI 393 (713)
Q Consensus 387 ~~~~~~~ 393 (713)
+.....+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 5444333
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-05 Score=84.29 Aligned_cols=233 Identities=12% Similarity=0.108 Sum_probs=142.7
Q ss_pred CEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCC
Q 005123 188 AIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC 260 (713)
Q Consensus 188 ~V~sl~~spd--g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~ 260 (713)
....|+|+++ +..|+++...+.|+.+|..++.+.... .......+|+|+++++ |+++...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 556666655588999999877765543 3456689999999999 55554321 2333332221
Q ss_pred ee-EEEEccCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEE-c-cCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 005123 261 QE-ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSF-H-GHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (713)
Q Consensus 261 ~~-~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I~IwDl~t~~~~~~~-~-~h~~~I~si~fspdg~~Latgs-~Dg~ 335 (713)
.. ...+. .......+++++ ++.++++-..++.|+.+|..+++....+ . .....-..|+|++++++|+++. .++.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11121 234567789999 6666556556788999999877653322 2 1223345799999999666555 5678
Q ss_pred EEEEECC--CCee--EEEeecC---------------CCCeEEEEE---------eCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 336 IKLYDIR--AMKE--LESFRGH---------------RKDVTALAW---------HPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 336 I~IwDl~--t~~~--l~~~~~h---------------~~~V~sl~f---------sp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
|+.+|.. +++. ...+.+. -.....+++ .. +++++++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CC
Confidence 9998865 2221 1122211 123567888 44 5667777667778888874 22
Q ss_pred CceEEEecc-----------------cCCCeEEEEEc-CCCcEEEE--eCCcEEEEecC
Q 005123 388 TPQVEIHNV-----------------HDNTVWDLAWH-PIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 388 ~~~~~~~~~-----------------h~~~V~~l~~s-pdg~~laS--~Dg~v~iWd~~ 426 (713)
.+..+... .-..-..|+++ .++.++++ ..+.|+.++++
T Consensus 375 -~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 01236789999 77766665 56778877764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00078 Score=77.47 Aligned_cols=284 Identities=8% Similarity=0.008 Sum_probs=153.9
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVK 221 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~~~~~~ 221 (713)
.....|++...++.|+.+. .++.|.+.++........+...-.....|++.+.+.+|+.+.. .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 5688999999766666554 5688999998765544444344456778999988777776664 356766676654443
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
......-...+.|++++++..|+.+. ..+.|..+|+........+.........|++..+ .++++-..++.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 33333445678999998777766664 4567888887653332222111112223444322 222222223334444433
Q ss_pred CCceEEEEc-----------------------------------------------------------------------
Q 005123 301 SGRELCSFH----------------------------------------------------------------------- 309 (713)
Q Consensus 301 t~~~~~~~~----------------------------------------------------------------------- 309 (713)
+++....+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 332111100
Q ss_pred -----------------------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCC
Q 005123 310 -----------------------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 310 -----------------------~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
..-..+..|+|.+.+..|+.+. ..+.|+.+++........+...-.....+++...
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 0011234445544333333332 3445555555432222222222245668888765
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC-CcEEEEe-CCcEEEEecCCCCC
Q 005123 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSN-DHTTKFWCRNRPGD 430 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~laS~-Dg~v~iWd~~~~~~ 430 (713)
+++++++-+..+.|.+.+++.... ..+....-....+|++++. |.+..++ ...-+|+..+..+.
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 677777777788999999865433 3333333457889999986 6665663 22244554444443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00039 Score=85.48 Aligned_cols=281 Identities=11% Similarity=0.077 Sum_probs=165.8
Q ss_pred CCceEEEEEccC------CCEEEEEEC-CCcEEEEeCCCCceEEEEecc-CCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 005123 144 RCSINRVLWTPT------GRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 144 ~~~V~~v~~spd------g~~Latgs~-dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~sp--dg~~L~sgs~DG~I~vw 213 (713)
.+.|.|+++.+. ++++|+|.. |++|+|+++.+.+.+...... +....++.+.. ...+|.+|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 567999999864 479999996 999999999987766543322 23444444432 33578899999998766
Q ss_pred EcC--CCceeee--eccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCce-EEEEEcCC--CCEEE
Q 005123 214 QNN--MNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-KSVDWHPT--KSLLV 286 (713)
Q Consensus 214 dl~--~~~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V-~sl~~spd--g~~L~ 286 (713)
.++ ++..... .......+.-..+...+..-+.+..+....++..+..-....+. ...+ ....|+.. .+-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~--~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN--LKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS--SSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC--hHHhceEeccCcccCCCcEE
Confidence 654 4433222 12223455555555445444444445555555433321112221 1223 23345432 23455
Q ss_pred EEeCCCcEEEEECCCCce--EEEEccCCCCeEEEEEcCCCCEEEEEECC-------------------------------
Q 005123 287 SGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKD------------------------------- 333 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~--~~~~~~h~~~I~si~fspdg~~Latgs~D------------------------------- 333 (713)
..+ ++.++|..+.+... ++++. -...+..++++++.+.++++..+
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred EEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 444 45699987754332 22332 34567888888876665543311
Q ss_pred ------------------CeEEEEECCCCeeEEEeecCC-CCeEEEE---EeCCCCCEEEEEE----------CCCcEEE
Q 005123 334 ------------------QIIKLYDIRAMKELESFRGHR-KDVTALA---WHPFHEEYFVSGS----------LDGSIFH 381 (713)
Q Consensus 334 ------------------g~I~IwDl~t~~~l~~~~~h~-~~V~sl~---fsp~~~~~lasgs----------~DG~I~I 381 (713)
+.|+++|-.+++.+..+.-.. ..+.+++ |..+...+|++|+ ..|.|++
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v 868 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV 868 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence 247778877777776665332 2344444 4333357888876 3578999
Q ss_pred EEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCC
Q 005123 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPG 429 (713)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~ 429 (713)
|++...+.........++.|++|+-- +|+++++-..+|+||++....
T Consensus 869 f~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 869 FQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTS
T ss_pred EEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCc
Confidence 99964322222222346789988755 358889999999999997654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.005 Score=70.85 Aligned_cols=285 Identities=7% Similarity=0.009 Sum_probs=160.4
Q ss_pred CceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCcee
Q 005123 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVK 221 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwdl~~~~~~ 221 (713)
.....|++...++.|+.+ ...+.|.+.++........+...-.....|++.+...+|+.+.. .+.|...+++.....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 456788888776666555 45678999998765443334344456789999987777776663 467777777665544
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~ 300 (713)
... ..-...+.|+++.++..|+.+.. .+.|..+|+..... ..+.........|++.. +.++++-...+.|...|..
T Consensus 160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 333 34557789999998777766654 57889999865433 23333333455666653 3333333335556666644
Q ss_pred CCceEEEEccC---------------------------------------------------------------------
Q 005123 301 SGRELCSFHGH--------------------------------------------------------------------- 311 (713)
Q Consensus 301 t~~~~~~~~~h--------------------------------------------------------------------- 311 (713)
+++....+...
T Consensus 237 tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~ 316 (628)
T 4a0p_A 237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK 316 (628)
T ss_dssp TCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEET
T ss_pred CCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeecc
Confidence 43321111100
Q ss_pred ----------------------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec------CCCCeEEEEE
Q 005123 312 ----------------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG------HRKDVTALAW 362 (713)
Q Consensus 312 ----------------------~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~------h~~~V~sl~f 362 (713)
...+..|+|.+.++.|+.+. ..+.|+.+++........+.. ....+..|++
T Consensus 317 ~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAv 396 (628)
T 4a0p_A 317 SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSI 396 (628)
T ss_dssp TEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEE
T ss_pred ceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEe
Confidence 01122333333222222222 223344443332111111111 1235678888
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-CCcEEEE--eCCcEEEEecCCCCCccc
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCS--NDHTTKFWCRNRPGDTAR 433 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~laS--~Dg~v~iWd~~~~~~~~~ 433 (713)
...+++++++-+..+.|.+.+++. .....+.........+|++++ ++.+..+ ....-+||..+..+...+
T Consensus 397 D~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~ 469 (628)
T 4a0p_A 397 DIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE 469 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE
T ss_pred eccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE
Confidence 875566777777788999999853 323333333456789999999 6666665 233236776666555443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.3e-05 Score=78.16 Aligned_cols=192 Identities=9% Similarity=0.140 Sum_probs=128.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccC----CC---EEEEEeC---CCcEEEEEcC--CCceee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN----DN---WMVSGDD---GGAIKYWQNN--MNNVKA 222 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spd----g~---~L~sgs~---DG~I~vwdl~--~~~~~~ 222 (713)
...+++....++-|.|||+ +++.+..+.. +.++.|..-++ ++ ++++..+ +++|.+|+++ ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456666677788999999 7888887754 56777766552 22 3344444 4789999774 333 33
Q ss_pred eecc------CC-CCeeEEEE--ecC-CC-EEEEEECCCeEEEEEcC-------CCeeEEEEccCCCceEEEEEcCCCCE
Q 005123 223 NKSA------HK-ESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 223 ~~~~------~~-~~V~~l~f--s~d-g~-~Las~s~Dg~I~iwDl~-------~~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
.+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++. ....+..+..++....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCe
Confidence 3311 11 56677887 553 43 68888889999999983 234566665 3467889999988889
Q ss_pred EEEEeCCCcEEEEECC-----CCceEEEEc--cCCCCeEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCeeEEEee
Q 005123 285 LVSGGKDSLVKLWDAK-----SGRELCSFH--GHKNMVLCVKW--NQNGN-WVLTAS-KDQIIKLYDIR-AMKELESFR 351 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~-----t~~~~~~~~--~h~~~I~si~f--spdg~-~Latgs-~Dg~I~IwDl~-t~~~l~~~~ 351 (713)
|+++-++..|..||.+ +++.+..+. .....+..|++ ..+++ ||++++ .+.++.|||.. +.+.+..|.
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999999777777865 344554442 12346888887 44555 677666 67799999996 555555554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00071 Score=77.81 Aligned_cols=202 Identities=4% Similarity=-0.116 Sum_probs=126.4
Q ss_pred CCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCce-EEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~-~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~ 220 (713)
-..+..|+|++.+..|+.+.. ++.|..++...... ...+...-.....|++...++.|+.+ ...+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345789999997777776654 57888898876532 33344333678899999866666655 4568899999886654
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLW 297 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~Iw 297 (713)
.......-....+|++.+.+.+|+.+.. .+.|...++........+.......+.|+++++++.|+.+. ..+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 4333344556789999987777666654 35777777754433333433456788999998766666554 45679999
Q ss_pred ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeE
Q 005123 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKEL 347 (713)
Q Consensus 298 Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l 347 (713)
|++.................|++..+ .|+.+ ..++.|...|..+++.+
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 98754332222212223346676544 45544 45678999998776543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00032 Score=82.73 Aligned_cols=223 Identities=8% Similarity=-0.045 Sum_probs=139.4
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEE-ECCCeEEEEEcCCC----eeEEEEccCCCceE
Q 005123 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARC----QEERSLTGHGWDVK 274 (713)
Q Consensus 200 ~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~----~~~~~l~~h~~~V~ 274 (713)
+|+.+ ....|+..++...+..... .....+..|+|...+..|+.+ ...+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44443 3466888888766554443 345677899999866555554 44678999998653 22334443456678
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCeeEEEee
Q 005123 275 SVDWHPTKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-D-QIIKLYDIRAMKELESFR 351 (713)
Q Consensus 275 sl~~spdg~~L~-sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-D-g~I~IwDl~t~~~l~~~~ 351 (713)
.|+++..++.|+ +-...+.|.+.+++.......+.........|++.+.+.+|+.+.. + +.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899988665554 4455778999999855444444444556899999997667766653 2 689999987544433344
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecc--cCCCeEEEEEcCCCcEEEE-eCCcEEEEec
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCS-NDHTTKFWCR 425 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~laS-~Dg~v~iWd~ 425 (713)
..-.....|++++.+++++++-.....|..++++.... ..+... .-....+|++..+.++++. ..+.|...+.
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 34467899999985666666656667899999855443 333322 2234567777665444443 4455555543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00018 Score=79.93 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=144.7
Q ss_pred ceEEEEEcc-CCCEEEEEE-CCCcEEEEeCCCCceEEEEecc---CCCEEEEEE-------ccCCCEEEEEeCCC-----
Q 005123 146 SINRVLWTP-TGRRLITGS-QSGEFTLWNGQSFNFEMILQAH---DHAIRSMVW-------SHNDNWMVSGDDGG----- 208 (713)
Q Consensus 146 ~V~~v~~sp-dg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~-------spdg~~L~sgs~DG----- 208 (713)
....|+|+| +...|+++. ..+.|++.|.+++.+...+... ......|+| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 355555554 4467999999887776655432 235899999 99999777776654
Q ss_pred --cEEEEEcCC-Ccee-----eeeccCCCCeeEEEEecCC-CEEEEEECCCeEEEEEcC-------CCee----------
Q 005123 209 --AIKYWQNNM-NNVK-----ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA-------RCQE---------- 262 (713)
Q Consensus 209 --~I~vwdl~~-~~~~-----~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~-------~~~~---------- 262 (713)
.|.+++... +... ..+. .......+++++++ .++++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665333 2221 1222 12345678889855 445555567889999987 4443
Q ss_pred -EEE-Ec-cCCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCce--EEEEccC---C------------CCeE-EE
Q 005123 263 -ERS-LT-GHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAK--SGRE--LCSFHGH---K------------NMVL-CV 318 (713)
Q Consensus 263 -~~~-l~-~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwDl~--t~~~--~~~~~~h---~------------~~I~-si 318 (713)
... +. ........|+|++++++|+++ +....|+.+|.. ++.. ...+.+. . ..-. .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 21 223456799999999965555 456678886553 3321 1222211 1 1233 34
Q ss_pred EEc-------CCCCEEEEEECCCeEEEEECCCCeeEEEeecC------------------------CCCeEEEEEeCCCC
Q 005123 319 KWN-------QNGNWVLTASKDQIIKLYDIRAMKELESFRGH------------------------RKDVTALAWHPFHE 367 (713)
Q Consensus 319 ~fs-------pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h------------------------~~~V~sl~fsp~~~ 367 (713)
+.. .+++++++-..+..|+.+| .++. +.++-+. -.....|+++++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 444 4566666666778899998 4453 3344321 02356788887336
Q ss_pred CEEEEEECCCcEEEEEcCCCC
Q 005123 368 EYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.++++=..+..|+.++++...
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC
T ss_pred EEEEEeCCCCEEEEEECCCCc
Confidence 666666667788888876544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00024 Score=74.82 Aligned_cols=229 Identities=8% Similarity=0.002 Sum_probs=131.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~---~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
...+.+|.|++ + .+++++.++.|+.-+ +.++.-..+. .+...+..|.+..+++.++++ .+|.|..- .+.++.
T Consensus 79 ~~~~~~i~~~~-~-~~~~~g~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIVGEPPIMLHTT-DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-T-EEEEEEETTEEEEES-STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-C-eEEEEECCCeEEEEC-CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCC
Confidence 44688999975 4 444455666555432 2233222222 233567888887776665554 45644321 222322
Q ss_pred e-eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc--CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 221 K-ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 221 ~-~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl--~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
- .........+.++.+.+++.+++++...+.++-+|- .+.+.+. ......+..+.+.+++.++ +++.+|.|++.
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFS 230 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEe
Confidence 2 222334557889999998887766654444444442 2333331 2345678899999888755 45567888777
Q ss_pred ECCCCceEEEEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec---CCCCeEEEEEeCCCCCEE
Q 005123 298 DAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 298 Dl~t~~~~~~~~~----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~---h~~~V~sl~fsp~~~~~l 370 (713)
+.+.++.-..+.. ....+.++.+.+++.+++++ .++.| ++..+.++.-..+.. ....+.++.|.. + ..+
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~ 306 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQG 306 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEE
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-Cce
Confidence 5333333222221 22358899998877766655 46766 445554544443432 345678888874 3 456
Q ss_pred EEEECCCcEEEEEc
Q 005123 371 VSGSLDGSIFHWLV 384 (713)
Q Consensus 371 asgs~DG~I~Iwd~ 384 (713)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 67778898776653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0017 Score=74.80 Aligned_cols=227 Identities=6% Similarity=-0.041 Sum_probs=151.3
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEE
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~ 235 (713)
+|+.+ ....|+..|+++.+....+.. .-..+..|+|++++..|+.++ .++.|..++++.......+.........|+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 45544 456799999987655443332 235688999998777777554 568899998876654444443335678899
Q ss_pred EecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEccCC
Q 005123 236 FCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 236 fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
+...+..|+.+ ...+.|.+.++........+.........|+++|....|+.+.. .+.|...+++.......+ ...
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCC
Confidence 98766655544 45678999998755443334345567899999986666666553 467888888754433333 345
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 313 NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 313 ~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.....|+++++++.|+.+. ..+.|..+|+..... ..+.........|++.. +.++++-...+.|...|..++..
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCc
Confidence 6788999999877776665 567899999875433 33433444567888753 56666666678898888755543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=91.10 Aligned_cols=236 Identities=8% Similarity=0.006 Sum_probs=132.4
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEEcCCCceeee--e-ccCCCCeeEEEEecCCCEEEEEEC-CCeEEE
Q 005123 191 SMVWSH-NDNWMVSGDDGG-----------AIKYWQNNMNNVKAN--K-SAHKESVRDLSFCRTDLKFCSCSD-DTTVKV 254 (713)
Q Consensus 191 sl~~sp-dg~~L~sgs~DG-----------~I~vwdl~~~~~~~~--~-~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~i 254 (713)
++++.+ ++++++.|+.+. .+.+||..+++.... + ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 788888887543 578899887753322 2 122334456777889999999884 568999
Q ss_pred EEcCCCeeEEEEccCC-CceEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCceEEEE----ccCCCCeEEEEEcCC
Q 005123 255 WDFARCQEERSLTGHG-WDVKSVDWHPTKSLLVSGG-KD-----SLVKLWDAKSGRELCSF----HGHKNMVLCVKWNQN 323 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~-~~V~sl~~spdg~~L~sgs-~D-----g~I~IwDl~t~~~~~~~----~~h~~~I~si~fspd 323 (713)
||..+.+-...-.... ..-.++++.++++++++|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9988764332211111 1223455667899999988 34 56999999876533220 000000000112234
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeeEEEeecCC---------CCeEEEEEeCCCCCEEEEEECCC--------
Q 005123 324 GNWVLTASKD---------QIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDG-------- 377 (713)
Q Consensus 324 g~~Latgs~D---------g~I~IwDl~t~~~l~~~~~h~---------~~V~sl~fsp~~~~~lasgs~DG-------- 377 (713)
++.++.++.+ ..+.+||..+........... ..-.++.|...++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 357888887765433222111 12355555544678888887543
Q ss_pred ---cEEEEEcCCCCceEEEe--cccCCCe-EEEEEcCCCcEEEE--eC-----------CcEEEEecCC
Q 005123 378 ---SIFHWLVGHETPQVEIH--NVHDNTV-WDLAWHPIGYLLCS--ND-----------HTTKFWCRNR 427 (713)
Q Consensus 378 ---~I~Iwd~~~~~~~~~~~--~~h~~~V-~~l~~spdg~~laS--~D-----------g~v~iWd~~~ 427 (713)
.|.+||..+..-. .+. ....... .+++..+++.+++. .+ ..+.+||.+.
T Consensus 430 ~~~~v~~yd~~~~~W~-~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNT-VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CEEEEECCSTTSCCEE-EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred cceEEEcCCCCCCCee-EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 5777777554422 221 1122222 34456667766654 22 4577777643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0023 Score=75.26 Aligned_cols=264 Identities=13% Similarity=0.152 Sum_probs=156.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~ 222 (713)
.+.|+||.-..+|. |..|+.+| |..||..+.+..... ......|.++....++ .|.+++.+| +.+||..+.....
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 56799999988884 66777777 677885432211000 1123568888777554 566666665 7889987765433
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spdg~~L~sgs~Dg~I~Iw 297 (713)
........|.++.. .++ .|.+++.+ .|..+|..+.+.. .+. .....|.++....++.+.+ ++.+ -|..|
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 170 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRY 170 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhC
Confidence 21122345776654 344 56666666 6888998765433 231 1235688888887776544 5554 58888
Q ss_pred ECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 298 DAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 298 Dl~t~~~~~~~~~-----h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
|..+++....... ....|.++....++..|.+|+. +-|..+|..+.+...........|.++.... ++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi- 247 (758)
T 3ott_A 171 IPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLA- 247 (758)
T ss_dssp ETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEE-
T ss_pred ccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEE-
Confidence 9876653321111 1234888888777776666664 4588899877654322111234577887765 455544
Q ss_pred EECCCcEEEEEcCCCCceEEEec-------ccCCCeEEEEEcCCCcE-EEEeCCcEEEE
Q 005123 373 GSLDGSIFHWLVGHETPQVEIHN-------VHDNTVWDLAWHPIGYL-LCSNDHTTKFW 423 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~-laS~Dg~v~iW 423 (713)
|+.+ -|.+++..+... ..+.. .....|.+|..+.++.+ +++..| +.++
T Consensus 248 gT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 248 GTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp EETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEE
T ss_pred EeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccc
Confidence 4444 577888755432 22211 12356999998888755 455545 5444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00022 Score=74.69 Aligned_cols=203 Identities=8% Similarity=0.051 Sum_probs=129.1
Q ss_pred CCCceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEecc-----C--CCEEEEEE---ccCCCEEEEEeC-----
Q 005123 143 NRCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAH-----D--HAIRSMVW---SHNDNWMVSGDD----- 206 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h-----~--~~V~sl~~---spdg~~L~sgs~----- 206 (713)
...--.+++|+.....|+.++ .++.|..||..++......... + ..+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 334455789988766777666 7899999998765544332211 1 13679999 578777765442
Q ss_pred --------CCcEEEEEcC---CCceeeeec--c-----------CCCCeeEEEEecCCCEEEEEECC-CeEEEEEcCCCe
Q 005123 207 --------GGAIKYWQNN---MNNVKANKS--A-----------HKESVRDLSFCRTDLKFCSCSDD-TTVKVWDFARCQ 261 (713)
Q Consensus 207 --------DG~I~vwdl~---~~~~~~~~~--~-----------~~~~V~~l~fs~dg~~Las~s~D-g~I~iwDl~~~~ 261 (713)
+..|..||+. +++.+.... . ....+.++++.++|+..++++.. +.|..+|.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999998 676554432 1 11248899999999999999888 888777765432
Q ss_pred eEEEE-c----cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEE-ccC---CCCeEEE-EEcCCCCEEE-
Q 005123 262 EERSL-T----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSF-HGH---KNMVLCV-KWNQNGNWVL- 328 (713)
Q Consensus 262 ~~~~l-~----~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~--~~~~-~~h---~~~I~si-~fspdg~~La- 328 (713)
....+ . ......+.|+++|++++|++...++.|..+|+++... +..- .+. -.....| ..-.+|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 22111 1 1122367999999999999987799999999985333 2111 021 1223333 3334677744
Q ss_pred EEECCCeEEEEECCCCe
Q 005123 329 TASKDQIIKLYDIRAMK 345 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~ 345 (713)
+...++.+.+.+.+.++
T Consensus 251 ~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 251 GARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEETTEEEEEECSSTTS
T ss_pred EcCCCCEEEEECCCCcc
Confidence 44456666666655443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00056 Score=72.92 Aligned_cols=222 Identities=10% Similarity=0.099 Sum_probs=124.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eee---ccCCCCeeEEEEecC---CCEEEEEEC-C-----Ce
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKESVRDLSFCRT---DLKFCSCSD-D-----TT 251 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~--~~~---~~~~~~V~~l~fs~d---g~~Las~s~-D-----g~ 251 (713)
-..-..++|.++|++ +++..+|.|.+++ +++.. ..+ .........|+|+++ +..|+++.. + +.
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985 4556679999998 33321 111 122456889999998 555555443 2 67
Q ss_pred EEEEEcCCCe-----eEE-EEc---cCCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 005123 252 VKVWDFARCQ-----EER-SLT---GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG------- 302 (713)
Q Consensus 252 I~iwDl~~~~-----~~~-~l~---~h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~------- 302 (713)
|..|+..... .+. .+. ........|+|.+||.++++.+. .++|.-+|.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 111 122 11123468999999976665432 145666665430
Q ss_pred -----ceEEEE-ccCCCCeEEEEEcC-CCCEEEEEECCCeE------EEEECCCCe------------------eEEEee
Q 005123 303 -----RELCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQII------KLYDIRAMK------------------ELESFR 351 (713)
Q Consensus 303 -----~~~~~~-~~h~~~I~si~fsp-dg~~Latgs~Dg~I------~IwDl~t~~------------------~l~~~~ 351 (713)
.....+ .++ .....++|++ +++++++-.....+ .|.-+..+. .+..+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 011111 122 2356789999 66655554333321 122222221 122221
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc------eEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~------~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
+......++|. ++.++++.-..+.|...+++.... ...++ .....+.++++.+||.+.++
T Consensus 266 -~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 266 -QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp -TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEE
T ss_pred -CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEE
Confidence 22345778884 567777666677788887754432 12222 22367899999999966655
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.2e-05 Score=77.87 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=116.3
Q ss_pred CCCEEEEEE-CC-----CcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc--
Q 005123 155 TGRRLITGS-QS-----GEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNN-- 219 (713)
Q Consensus 155 dg~~Latgs-~d-----g~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~-- 219 (713)
++.+++.|+ .+ ..+.+||..+.+....-. .......++. -++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555665 22 468899988765433211 1111122222 256777777754 468899988766
Q ss_pred -eeeeec--cCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEe
Q 005123 220 -VKANKS--AHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 220 -~~~~~~--~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
-...-. ........+.+ +++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 322211 11111222222 56666666543 3688999877653322 2211222223333 567777776
Q ss_pred CC-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEE--eecCCC
Q 005123 290 KD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRK 355 (713)
Q Consensus 290 ~D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~--~~~h~~ 355 (713)
.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..|.+||+++.+-... +.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4589999987653322 1111112223333 66777777654 4699999987653322 211112
Q ss_pred CeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 356 DVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
....+.+ ++.+++.|+.+ ..|.+||.++.
T Consensus 246 ~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2233332 56677777765 35677777554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00035 Score=73.75 Aligned_cols=184 Identities=10% Similarity=0.132 Sum_probs=122.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecC----CC---EEEEEEC---CCeEEEEEcC--CCeeEEE
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----DL---KFCSCSD---DTTVKVWDFA--RCQEERS 265 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~d----g~---~Las~s~---Dg~I~iwDl~--~~~~~~~ 265 (713)
..+++....++-+.+||+ +++.+..+.. ..++.+.+-++ ++ ++++... +++|++|++. +. .+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence 456777778889999999 7777776643 56677766552 22 2333333 5799999773 33 3444
Q ss_pred Ecc------CC-CceEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 266 LTG------HG-WDVKSVDW--HPT-KS-LLVSGGKDSLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 266 l~~------h~-~~V~sl~~--spd-g~-~L~sgs~Dg~I~IwDl~-------t~~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
+.. .. ..+..+++ ++. ++ ++++..++|.+..|++. +.+.+++|.. .+.+..+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 421 11 56677787 664 44 68888889999999883 3355677763 4678888898888899
Q ss_pred EEEECCCeEEEEECC-----CCeeEEEee-c-CCCCeEEEEEe--CCCCCEEEEEE-CCCcEEEEEcCC
Q 005123 328 LTASKDQIIKLYDIR-----AMKELESFR-G-HRKDVTALAWH--PFHEEYFVSGS-LDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~Dg~I~IwDl~-----t~~~l~~~~-~-h~~~V~sl~fs--p~~~~~lasgs-~DG~I~Iwd~~~ 386 (713)
+++-++.-|..||.+ +.+.+..+. + ....+..|++- .++..+|++++ .+.++.+||...
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 999999888888865 345555542 2 23478888884 32222454444 677999999963
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0052 Score=72.24 Aligned_cols=269 Identities=11% Similarity=0.071 Sum_probs=155.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~ 223 (713)
...|.++....++ .|.+|+.+| +.+||..+.+...........|.++... ++ .|.+++.+ -|..+|..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568888877766 577777765 7899988765432111123457777643 44 56666665 577888877654432
Q ss_pred e----ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-----CCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 224 K----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 224 ~----~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-----h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
. ......|.++....++.+.+ ++.+ -|..+|..+.+....... ....|.++....++..|.+|+. +-|
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 1 11234688888777776554 4544 578888776653321111 1234888888877776666764 468
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-------cCCCCeEEEEEeCCCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHE 367 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-------~h~~~V~sl~fsp~~~ 367 (713)
..+|..+++...........|.++....+|.+.+ |+.+ -|.++|..+.+...... .....|.++.... ++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g 290 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EH 290 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CC
Confidence 8899877653322111234588888877776544 5544 58889887654322211 1234588888765 44
Q ss_pred CEEEEEECCCcEEEEEcCCCCceEEEe----cccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.+. .|+..| |.++............ ......|.++.-..++.+-++.++-+..++.
T Consensus 291 ~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~~~~~ 350 (758)
T 3ott_A 291 NIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLIRFTD 350 (758)
T ss_dssp CEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEEEESC
T ss_pred CEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcceeecc
Confidence 444 455556 5554432211111110 0123468899888888655443444555543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00096 Score=71.19 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=127.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeee---ccCCCCeeEEEEecC---CCEEEEEEC----C----C
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VKANK---SAHKESVRDLSFCRT---DLKFCSCSD----D----T 250 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-~~~~~---~~~~~~V~~l~fs~d---g~~Las~s~----D----g 250 (713)
-.....++|.++++ |+++..+|.|++++. +++ .+..+ .........|+|+++ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34577999999987 555566799999873 343 22211 122356889999997 555555443 3 5
Q ss_pred eEEEEEcCCC--e---e--E-EEEcc-CCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 005123 251 TVKVWDFARC--Q---E--E-RSLTG-HGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG------ 302 (713)
Q Consensus 251 ~I~iwDl~~~--~---~--~-~~l~~-h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~------ 302 (713)
.|..|+.... . . + ..+.. .......|+|.+|+.++++.+. .++|.-+|.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888887643 1 1 1 11221 1123567999999986666432 245666665421
Q ss_pred ---ceEEEEccCCCCeEEEEEcC-CCCEEEEEECCC---eEEEEECCC--------C--------eeEEEeecCCCCeEE
Q 005123 303 ---RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQ---IIKLYDIRA--------M--------KELESFRGHRKDVTA 359 (713)
Q Consensus 303 ---~~~~~~~~h~~~I~si~fsp-dg~~Latgs~Dg---~I~IwDl~t--------~--------~~l~~~~~h~~~V~s 359 (713)
..+.. .++ .....++|++ +++++++-.... .|.+.+.-. + ..+..+.........
T Consensus 186 f~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 11211 222 2356799999 566555432221 243332110 0 112222112345788
Q ss_pred EEEeC------CCCCEEEEEECCCcEEEEEcCCCCceE---EEecccCCCeEEEEEcCCCcEEEEe
Q 005123 360 LAWHP------FHEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIGYLLCSN 416 (713)
Q Consensus 360 l~fsp------~~~~~lasgs~DG~I~Iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~laS~ 416 (713)
++|.. .++.++++.-..+.|...+++...... .++......+.+|++.+||.+.++.
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 88842 256677776667788888886543222 2332224578999999999666554
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.005 Score=66.28 Aligned_cols=232 Identities=10% Similarity=0.113 Sum_probs=152.6
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccC-
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~- 227 (713)
.-.+|..+.||.=. ...+.|||+++...++.+.-.+ .|.-=.|..+ +.|+..+ +..|+-|+++.. ...+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 44566666666554 6789999999998888887644 5666677644 5555554 478999999753 333333332
Q ss_pred ---CCCeeEEEEecCCCEEEEEEC-------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC---CEEEEEeCC---
Q 005123 228 ---KESVRDLSFCRTDLKFCSCSD-------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGGKD--- 291 (713)
Q Consensus 228 ---~~~V~~l~fs~dg~~Las~s~-------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg---~~L~sgs~D--- 291 (713)
...|.....+++.++++..+- .|.+.+|.++++ ....+.+|......+.+.-+. .+++.+...
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 356777788888888775432 467889998764 456677777666555554321 244545443
Q ss_pred CcEEEEECCCC--------ceEEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 292 SLVKLWDAKSG--------RELCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 292 g~I~IwDl~t~--------~~~~~~----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
+++.|.++... +....+ +...+.-.++..|+.-..++.-+.-|.|.+||+.++.++..-+-....|..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 78999998543 111111 122445677888988889999999999999999999999887766666665
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcCCC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~~~ 387 (713)
.+-+. ...=+++...+|.|.--.++..
T Consensus 306 t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 306 TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 55554 3334444556666655555443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00084 Score=74.54 Aligned_cols=240 Identities=10% Similarity=0.071 Sum_probs=143.0
Q ss_pred CEEEEEEcc-CCCEEEEEe-CCCcEEEEEcCCCceeeeeccC---CCCeeEEEE-------ecCCCEEEEEECCC-----
Q 005123 188 AIRSMVWSH-NDNWMVSGD-DGGAIKYWQNNMNNVKANKSAH---KESVRDLSF-------CRTDLKFCSCSDDT----- 250 (713)
Q Consensus 188 ~V~sl~~sp-dg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~---~~~V~~l~f-------s~dg~~Las~s~Dg----- 250 (713)
....|+|+| ++..|+++. ..+.|++.|++++.+....... ......|+| +.++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 355555554 4467888998887776554332 235899999 99999777776654
Q ss_pred --eEEEEEcCC-CeeE-----EEEccCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q 005123 251 --TVKVWDFAR-CQEE-----RSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK-------SGRE---------- 304 (713)
Q Consensus 251 --~I~iwDl~~-~~~~-----~~l~~h~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~-------t~~~---------- 304 (713)
.|.+++... +... ..+.. ......++++++ +.++++-..++.|..+|++ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 12221 234567889994 5555566677889999987 5543
Q ss_pred -EEE-E-ccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECC--CCee--EEEeecC---C------------CCeE-EE
Q 005123 305 -LCS-F-HGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIR--AMKE--LESFRGH---R------------KDVT-AL 360 (713)
Q Consensus 305 -~~~-~-~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~--t~~~--l~~~~~h---~------------~~V~-sl 360 (713)
... + .........|+|+++|++|+++ +....|+.+|.. ++.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 2 2233456899999999965555 456788886653 3321 1222221 0 1234 34
Q ss_pred EEeC------CCCCEEEEEECCCcEEEEEcCCCCceEEEecc-----------------------cCCCeEEEEEcCC-C
Q 005123 361 AWHP------FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----------------------HDNTVWDLAWHPI-G 410 (713)
Q Consensus 361 ~fsp------~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~-----------------------h~~~V~~l~~spd-g 410 (713)
+... .++.++++-..+.+|+.++. ++ .+..+... .-..-..|+++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 4431 24667777777788988883 33 22222210 0123678999986 7
Q ss_pred cEEEE--eCCcEEEEecCCCCC
Q 005123 411 YLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 411 ~~laS--~Dg~v~iWd~~~~~~ 430 (713)
.+.++ ..+.||.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 66655 667888887755433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.12 E-value=5.3e-06 Score=97.09 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=132.2
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC----CceeeeeccCCCCeeEEEEecC
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRT 239 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~----~~~~~~~~~~~~~V~~l~fs~d 239 (713)
...|++.++.+.+....+.. ...+..|+|.+++..|+.+. ..+.|+.+++.. ......+.........|++...
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 45788888877655443332 34567899998777777664 457899998875 2222222222234567888754
Q ss_pred CC-EEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEccCCCCeE
Q 005123 240 DL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 240 g~-~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~--Dg~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
+. ++++-...+.|.++|+........+.........|++++.+.+|+.+.. .+.|.++++........+.......+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 44 4444455788999998765444444333456788999986665555443 26788888764332222222334567
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 317 CVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 317 si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.|+|++++..|+.+ +..+.|.++|+........+.. .......|++.. +.++++....+.|..++..++.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCC
Confidence 89999876555544 4567899999874333222221 123344556643 4666666667788888865544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00073 Score=72.04 Aligned_cols=225 Identities=10% Similarity=0.094 Sum_probs=122.0
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEE--Ee---ccCCCEEEEEEccC---CCEEEEEeCC------Cc
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQ---AHDHAIRSMVWSHN---DNWMVSGDDG------GA 209 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~--l~---~h~~~V~sl~~spd---g~~L~sgs~D------G~ 209 (713)
-..-..++|.+||+ |+++..+|.|++++ +++.... +. ........|+|+++ +..|+++... +.
T Consensus 30 l~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34578999999998 55556779999998 3332211 11 12456889999998 5666655432 56
Q ss_pred EEEEEcCCCce-----e-eeec---cCCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCC-------
Q 005123 210 IKYWQNNMNNV-----K-ANKS---AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC------- 260 (713)
Q Consensus 210 I~vwdl~~~~~-----~-~~~~---~~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~------- 260 (713)
|..|+...+.. + ..+. ........|+|.+|+.++++.+. .++|..+|....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 77787764321 1 1122 11123468999999976665432 145666665420
Q ss_pred -----eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCCcE------EEEECCCCc------------------eEEEEcc
Q 005123 261 -----QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV------KLWDAKSGR------------------ELCSFHG 310 (713)
Q Consensus 261 -----~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg~I------~IwDl~t~~------------------~~~~~~~ 310 (713)
.....+..-......++|++ +++++++-.....+ .|.-+..+. .+..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 01111111123467889999 56655443322221 122222221 112221
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee------EEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE------LESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~------l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.......++| .+|+++++....+.|...+++.... ...+..-...+..+++.+ ++.++++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEe
Confidence 2234567777 4666666655667788777753321 122222235688888888 556555543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00015 Score=74.94 Aligned_cols=220 Identities=11% Similarity=0.086 Sum_probs=113.4
Q ss_pred CEEEEEECC----CcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeec
Q 005123 157 RRLITGSQS----GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 157 ~~Latgs~d----g~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~~~~~~~ 225 (713)
.+++.|+.+ ..+.+||..+.+....-... ...-..+.+ ++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 345555543 45888998876543321111 111122222 66677777654 358888888765333221
Q ss_pred cC--CCCeeEEEEecCCCEEEEEECCC-----eEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCC-----
Q 005123 226 AH--KESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD----- 291 (713)
Q Consensus 226 ~~--~~~V~~l~fs~dg~~Las~s~Dg-----~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~D----- 291 (713)
.. ......+. -+++.++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence 11 11122222 2566777776543 578889877653322 1111122223333 46667766542
Q ss_pred --CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEE--eecCCCCeEEE
Q 005123 292 --SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKDVTAL 360 (713)
Q Consensus 292 --g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~--~~~h~~~V~sl 360 (713)
..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +.........+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 3588999987653322 1111122222333 67777777654 3699999987543222 21111122222
Q ss_pred EEeCCCCCEEEEEECCC-----cEEEEEcCCC
Q 005123 361 AWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (713)
Q Consensus 361 ~fsp~~~~~lasgs~DG-----~I~Iwd~~~~ 387 (713)
.+ ++.+++.|+.++ .|.+||..+.
T Consensus 249 ~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 249 AV---NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EE---CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 22 567777777653 4778887654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0011 Score=69.25 Aligned_cols=197 Identities=9% Similarity=0.097 Sum_probs=126.9
Q ss_pred CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccC-------CCCeeEEEE---ecCCCEEEEEE-------
Q 005123 186 DHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAH-------KESVRDLSF---CRTDLKFCSCS------- 247 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~-------~~~V~~l~f---s~dg~~Las~s------- 247 (713)
...-.+++|......|+.++ ..+.|..||...+......... ...+..|.| .++++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 33445789987666666665 7899999998866443332211 114678999 57877766544
Q ss_pred ------CCCeEEEEEcC---CCeeEEEEcc-------------CCCceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCce
Q 005123 248 ------DDTTVKVWDFA---RCQEERSLTG-------------HGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGRE 304 (713)
Q Consensus 248 ------~Dg~I~iwDl~---~~~~~~~l~~-------------h~~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~t~~~ 304 (713)
.+..|..||+. +++.+..... ....+..++..++|+..++++.. +.|..+|.+.. .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 26789999998 7766654431 11348899999999999999888 88888887643 3
Q ss_pred EEEEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee--EEEee--cC---CCCeEEE-EEeCCCCCE-
Q 005123 305 LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFR--GH---RKDVTAL-AWHPFHEEY- 369 (713)
Q Consensus 305 ~~~~~------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~--l~~~~--~h---~~~V~sl-~fsp~~~~~- 369 (713)
+..+. ......+.|+++++|++|++...++.|..+|+++... +. .. +. -.....| ..-- ++++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~-~G~vl 248 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPV-GNESV 248 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEE-TTEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCccccccccc-CCEEE
Confidence 33221 1122367999999999999887799999999885332 21 11 21 1223333 2222 4555
Q ss_pred EEEEECCCcEEEEEcC
Q 005123 370 FVSGSLDGSIFHWLVG 385 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~ 385 (713)
|++.+..+.+.+.+.+
T Consensus 249 lV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 249 LVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEETTEEEEEECSS
T ss_pred EEEcCCCCEEEEECCC
Confidence 5555556655555543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.023 Score=61.23 Aligned_cols=256 Identities=11% Similarity=0.125 Sum_probs=163.1
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La 244 (713)
+..|.|.|+.+.....+..-. ..+...+|..+.|+.-. ..++.|+|+++...+....- .+.|.-=.|..+. .|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEE
Confidence 347888998876554332211 12345677778777665 68999999999988777644 4567667776544 344
Q ss_pred EEECCCeEEEEEcCC-CeeEEEEccC----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceEEEEccCC
Q 005123 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~-~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~-------Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
..+ +..|+.|+++. ....+.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence 443 55899999964 3445555443 356888888999998876542 46788999874 4456677777
Q ss_pred CCeEEEEEcCC---CCEEEEEECC---CeEEEEECCCC--------e-eEEEee---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 313 NMVLCVKWNQN---GNWVLTASKD---QIIKLYDIRAM--------K-ELESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 313 ~~I~si~fspd---g~~Latgs~D---g~I~IwDl~t~--------~-~l~~~~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.....+.+.-+ ..+|+.+... +++.|.++... + .+..+- .-.+--.++..++ .-.++...+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviT 277 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEe
Confidence 66655554321 1244445443 78999998532 1 111111 1234467788888 677888999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC-CcEE-EEeCCcEEEEecCCCCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLL-CSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l-aS~Dg~v~iWd~~~~~~ 430 (713)
.-|.|++||+.++..+..-. ...+.|...+-+.+ +-++ +...|.|.--.++....
T Consensus 278 K~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred cCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 99999999999988665544 33455555444433 3333 34677776666655443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=94.35 Aligned_cols=218 Identities=6% Similarity=-0.084 Sum_probs=130.1
Q ss_pred CCceEEEEEccCCCEEEEEE-CCCcEEEEeCCC----CceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q 005123 144 RCSINRVLWTPTGRRLITGS-QSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNM 217 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t----~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~ 217 (713)
...+..|+|++++..|+.+. .++.|+.+++.+ ......+.........|++...+..|+ +-...+.|.+++++.
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 34577899998777777664 457899998875 222222221122345677775444444 445568899999876
Q ss_pred CceeeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcE
Q 005123 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLV 294 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I 294 (713)
......+.........|++.+.+.+|+.+.. .+.|.++++........+.......+.|+|++++..|+.+ +..+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 6554444333456788899887665555543 2678888775433322222234457789999876555444 456789
Q ss_pred EEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEE
Q 005123 295 KLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~f 362 (713)
.++|+........+. ........|++..+ .++++....+.|..+|..+++.+..+.......+.|++
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 999987533222222 11233445666433 34445556678999998888887777543333444443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0039 Score=66.39 Aligned_cols=227 Identities=10% Similarity=0.089 Sum_probs=126.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc-eEEEEe---ccCCCEEEEEEccC---CCEEEEEeC----C----C
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQ---AHDHAIRSMVWSHN---DNWMVSGDD----G----G 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~-~~~~l~---~h~~~V~sl~~spd---g~~L~sgs~----D----G 208 (713)
-.....|+|.+||+ |+++..+|.|+++|. +++ .+..+. ........|+|+++ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997 556667799999973 444 111111 12356889999997 556655443 2 5
Q ss_pred cEEEEEcCCC--c-----ee-eeec-cCCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCC------
Q 005123 209 AIKYWQNNMN--N-----VK-ANKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC------ 260 (713)
Q Consensus 209 ~I~vwdl~~~--~-----~~-~~~~-~~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~------ 260 (713)
.|..|+.... . .+ ..+. ........|+|.+|+.++++.+. .|+|..+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776654 1 11 1111 11123467999999987666433 245555554321
Q ss_pred --eeEEEEccCCCceEEEEEcC-CCCEEEEEeCCC---cEEEEECCC--------C--------ceEEEEccCCCCeEEE
Q 005123 261 --QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDS---LVKLWDAKS--------G--------RELCSFHGHKNMVLCV 318 (713)
Q Consensus 261 --~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~Dg---~I~IwDl~t--------~--------~~~~~~~~h~~~I~si 318 (713)
.......++ .....++|++ +++++++-.... .|.+..... + ..+..+.........+
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 011111222 3456899999 565444432221 243332110 0 1122221123457788
Q ss_pred EEc-------CCCCEEEEEECCCeEEEEECCCC-eeE--EEee-cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 319 KWN-------QNGNWVLTASKDQIIKLYDIRAM-KEL--ESFR-GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 319 ~fs-------pdg~~Latgs~Dg~I~IwDl~t~-~~l--~~~~-~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+|. .+|+++++....+.|...++... +.. ..+. .....+..+++.+ ++.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 883 46777766666778988888753 222 2222 2235688999988 566666554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00032 Score=72.65 Aligned_cols=221 Identities=10% Similarity=0.088 Sum_probs=115.5
Q ss_pred EEEEEEC--CCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceeeeeccCCC
Q 005123 158 RLITGSQ--SGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNMNNVKANKSAHKE 229 (713)
Q Consensus 158 ~Latgs~--dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwdl~~~~~~~~~~~~~~ 229 (713)
+++.|+. ...+.+||..+.+....-. .......++.+ ++++++.|+.+ ..+.+||..+++-...-.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 3578999988765443211 11112222222 66677777754 6688899887754332211111
Q ss_pred CeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC---------CC
Q 005123 230 SVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK---------DS 292 (713)
Q Consensus 230 ~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~---------Dg 292 (713)
.....+..-+++.++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+. ..
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence 11111122266677777654 4689999887653322 1111122223333 4666666653 34
Q ss_pred cEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEE--EeecCCCCeEEEEEe
Q 005123 293 LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELE--SFRGHRKDVTALAWH 363 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~--~~~~h~~~V~sl~fs 363 (713)
.+.+||+.+.+-... +......-..+.+ ++++++.|+.+ ..|.+||+.+.+-.. .+.........+.+
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 588999987643322 1111111222223 66677776643 468999998754322 22211222333333
Q ss_pred CCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 364 PFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 364 p~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
++.+++.|+.+ ..|.+||..+.
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 56778888754 45777887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0056 Score=63.68 Aligned_cols=208 Identities=7% Similarity=0.023 Sum_probs=117.9
Q ss_pred ccCCCEEEEEEC--CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC--------------CcEEEEEcC
Q 005123 153 TPTGRRLITGSQ--SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------------GAIKYWQNN 216 (713)
Q Consensus 153 spdg~~Latgs~--dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------------G~I~vwdl~ 216 (713)
+.++.+|+.... ++.|+..+.+..... .+... . +-.+++++++|+-+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 356777777653 566777776554433 33321 2 34557788888866542 357777777
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEE----CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC-C
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCS----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-D 291 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s----~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-D 291 (713)
..+...... .. +..|+.++++|+-+. .+..|+..++.... ...+..+.. ..|+++++.|+..+. .
T Consensus 97 g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence 665433221 11 235677888888776 34456666665433 333433322 344556888887765 5
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D--g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~ 369 (713)
..|.+.++..+.....+. .... +.++|++++|+....+ ..|..-++.... ...+. ...+. .|++ .+.+
T Consensus 167 ~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~~--~~~~-~g~~ 236 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANIE--HYNV-YGSL 236 (302)
T ss_dssp CCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCEE--EEEE-ETTE
T ss_pred ceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCcc--eEEE-CCCE
Confidence 678888887665444333 2222 3456889998877654 367777776544 33332 23333 3666 4555
Q ss_pred EEEEEC--CCcEEEEEcC
Q 005123 370 FVSGSL--DGSIFHWLVG 385 (713)
Q Consensus 370 lasgs~--DG~I~Iwd~~ 385 (713)
|+-++. .+.|..-+++
T Consensus 237 Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEECSSSCEEEEEETT
T ss_pred EEEEECCCCcEEEEEECC
Confidence 555433 3456555653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0084 Score=63.74 Aligned_cols=238 Identities=11% Similarity=0.100 Sum_probs=131.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee---e----ccCCCCeeEEEEecC---CCEEEEEE-C-------
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---K----SAHKESVRDLSFCRT---DLKFCSCS-D------- 248 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~---~----~~~~~~V~~l~fs~d---g~~Las~s-~------- 248 (713)
.....|+|.++++.|+++..+|.|++++.+ +..... + .........|+|+++ +..|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456799999999845566678999999853 322111 1 112345689999986 45555443 2
Q ss_pred CCeEEEEEcCCC----eeEE-EEcc------CCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc-
Q 005123 249 DTTVKVWDFARC----QEER-SLTG------HGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSGR- 303 (713)
Q Consensus 249 Dg~I~iwDl~~~----~~~~-~l~~------h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~~- 303 (713)
...|..|++... .... .+.. .......|+|.+|+.++++.+. .++|.-+|.+..-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666776432 1111 1211 1122467999999965555433 2457677765320
Q ss_pred -----------eEEEEccCCCCeEEEEEcC-CCCEEEEEEC-CCeEEEEECCCCee------------------------
Q 005123 304 -----------ELCSFHGHKNMVLCVKWNQ-NGNWVLTASK-DQIIKLYDIRAMKE------------------------ 346 (713)
Q Consensus 304 -----------~~~~~~~h~~~I~si~fsp-dg~~Latgs~-Dg~I~IwDl~t~~~------------------------ 346 (713)
....+..-......++|++ +++++++-.. ++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111211123477899999 5554443221 11112222211111
Q ss_pred -------EEEeecCCCCeEEEEEeCC------CCCEEEEEECCCcEEEEEcCCCCce--EEEecccCCCeEEEEEcCCCc
Q 005123 347 -------LESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQ--VEIHNVHDNTVWDLAWHPIGY 411 (713)
Q Consensus 347 -------l~~~~~h~~~V~sl~fsp~------~~~~lasgs~DG~I~Iwd~~~~~~~--~~~~~~h~~~V~~l~~spdg~ 411 (713)
+..+. +...+..++|... ++.+|++.-..+.|...+++.+... ..++......+.+|++.+||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 11122 2235677888642 3567777667778888887643211 112222235799999999997
Q ss_pred EEEE-eCCcEEEEecC
Q 005123 412 LLCS-NDHTTKFWCRN 426 (713)
Q Consensus 412 ~laS-~Dg~v~iWd~~ 426 (713)
+.++ .+..-+||.+.
T Consensus 336 lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 336 LYVLTDESSGELLKVS 351 (353)
T ss_dssp EEEEECSTTEEEEEEE
T ss_pred EEEEEeCCCCEEEEEe
Confidence 6665 54677888763
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.019 Score=60.69 Aligned_cols=231 Identities=10% Similarity=0.093 Sum_probs=129.8
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--e----ccCCCCeeEEEEecC---CCEEEEE-E--CC
Q 005123 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--K----SAHKESVRDLSFCRT---DLKFCSC-S--DD 249 (713)
Q Consensus 182 l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~--~----~~~~~~V~~l~fs~d---g~~Las~-s--~D 249 (713)
+...-..-..|+|.+||++|++--..|.|++++..+++.... + .........|+|+++ +..|+++ + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333345678999999998776665589999998665543211 1 123456789999985 3444443 2 34
Q ss_pred CeEEEEEcCCC----------eeEE-EEc-cCCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC--
Q 005123 250 TTVKVWDFARC----------QEER-SLT-GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG-- 302 (713)
Q Consensus 250 g~I~iwDl~~~----------~~~~-~l~-~h~~~V~sl~~spdg~~L~sgs~-------------Dg~I~IwDl~t~-- 302 (713)
+.|.-|.+... +.+. .+. ........|.|.+|+.++++.+. .|+|.-++.+..
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56666766541 1111 121 11223567999999987777542 244555554422
Q ss_pred ------ceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee------------------EEEeecCCCCe
Q 005123 303 ------RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------------LESFRGHRKDV 357 (713)
Q Consensus 303 ------~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~------------------l~~~~~h~~~V 357 (713)
.....-.++. ....++|+++|+++++-. .|+.-.|.-+..+.. +..+..+....
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 1111112333 356789999887655432 232222222222211 22222222356
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcCCCC---ceEEEecccCCCeEEEEEcCCCcEEEE
Q 005123 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~laS 415 (713)
..++|.. +.+++..-..+.|....++... ....++......+.+|+..+||.+.++
T Consensus 266 ~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 266 SGIAYAE--GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp EEEEEET--TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred cceEEEc--CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence 7788863 5666666666677777765432 123344444568999999999966655
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00036 Score=72.56 Aligned_cols=222 Identities=10% Similarity=0.073 Sum_probs=114.8
Q ss_pred CCCEEEEEEC----CCcEEEEeCCCCceEEEEec--cCCCEEEEEEccCCCEEEEEeC----C-----CcEEEEEcCCCc
Q 005123 155 TGRRLITGSQ----SGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDD----G-----GAIKYWQNNMNN 219 (713)
Q Consensus 155 dg~~Latgs~----dg~V~Iwd~~t~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~----D-----G~I~vwdl~~~~ 219 (713)
++.+++.|+. -..+.+||..+.+....-.. .......+.+ ++++++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4566667663 24688999887654432111 1111122222 5666777665 2 467888888765
Q ss_pred eeeeec--cCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC
Q 005123 220 VKANKS--AHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 220 ~~~~~~--~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
-...-. ........+.+ +++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 333211 11112222222 56666665532 4688999877643322 1111122233333 5677777765
Q ss_pred C-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEE--eecCCCC
Q 005123 291 D-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKD 356 (713)
Q Consensus 291 D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~--~~~h~~~ 356 (713)
+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4589999887643221 1111122223333 67777777654 4699999987543221 2111122
Q ss_pred eEEEEEeCCCCCEEEEEECCC-----cEEEEEcCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG-----~I~Iwd~~~~ 387 (713)
...+.+ ++.+++.|+.++ .|.+||+.+.
T Consensus 256 ~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 222222 567777776543 4667777544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0032 Score=67.00 Aligned_cols=225 Identities=10% Similarity=0.095 Sum_probs=123.9
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-------eccCCCEEEEEEccC---CCEEEEEeC--------C
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHN---DNWMVSGDD--------G 207 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-------~~h~~~V~sl~~spd---g~~L~sgs~--------D 207 (713)
..+.|+|.++|++|+++..+|.|++++.. ++....+ .........|+|+++ +.+|+++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 57899999999845566678999999853 2221111 112346789999996 555554432 2
Q ss_pred CcEEEEEcCCC--c---eeeeecc------CCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCCe--
Q 005123 208 GAIKYWQNNMN--N---VKANKSA------HKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ-- 261 (713)
Q Consensus 208 G~I~vwdl~~~--~---~~~~~~~------~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~~-- 261 (713)
..|..|+++.. . ....+.. .......|+|.+|+.++++.+. .|+|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666433 1 1111111 1122467999999966555433 2467666654320
Q ss_pred ----------eEEEEccCCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCc--------------------------
Q 005123 262 ----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGR-------------------------- 303 (713)
Q Consensus 262 ----------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg--~I~IwDl~t~~-------------------------- 303 (713)
....+..-......++|+++...|+++.... .=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 1111211224578899999434454443321 11222121111
Q ss_pred -----eEEEEccCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeeEEE---eecCCCCeEEEEEeCCCCC
Q 005123 304 -----ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES---FRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 304 -----~~~~~~~h~~~I~si~fsp-------dg~~Latgs~Dg~I~IwDl~t~~~l~~---~~~h~~~V~sl~fsp~~~~ 368 (713)
.+..+. +......+.|.. ++++|++....+.|...+++.++.+.. +......+..+++.+ ++.
T Consensus 258 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~ 335 (353)
T 2g8s_A 258 AGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGY 335 (353)
T ss_dssp TTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSC
T ss_pred CCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCc
Confidence 111122 223567788864 466777666778888888876554332 222345789999999 566
Q ss_pred EEEEE
Q 005123 369 YFVSG 373 (713)
Q Consensus 369 ~lasg 373 (713)
++++.
T Consensus 336 lyv~t 340 (353)
T 2g8s_A 336 LYVLT 340 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0015 Score=68.03 Aligned_cols=207 Identities=10% Similarity=0.081 Sum_probs=105.5
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEec--cCCCEEEEEEccCCCEEEEEeC-----C------CcEEEEEcCCCceeeeec
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDD-----G------GAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~-----D------G~I~vwdl~~~~~~~~~~ 225 (713)
++.|+ ..+.+||..+.+... ... ........+...++++++.|+. . ..+.+||..+++-...-.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 44454 579999998877543 221 1122233333447788888873 1 126778887765332211
Q ss_pred cCCCCe-eEEEEecCCCEEEEEECC--------CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC-C--
Q 005123 226 AHKESV-RDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK-D-- 291 (713)
Q Consensus 226 ~~~~~V-~~l~fs~dg~~Las~s~D--------g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~-D-- 291 (713)
...... .+++.. +++.++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTS
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCC
Confidence 111111 112222 55666666532 4689999887643221 1111122223332 4667777765 2
Q ss_pred ---CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeeEEE--eecCCCCeEE
Q 005123 292 ---SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELES--FRGHRKDVTA 359 (713)
Q Consensus 292 ---g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~~l~~--~~~h~~~V~s 359 (713)
..+.+||..+.+-... +........++.+ ++++++.|+.++ .+.+||+.+.+-... +.........
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 4589999987643221 1111112222333 677777877654 588999987543322 1111222223
Q ss_pred EEEeCCCCCEEEEEECC
Q 005123 360 LAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 360 l~fsp~~~~~lasgs~D 376 (713)
+.+ ++.+++.|+.+
T Consensus 240 ~~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 240 VSL---VGTLYAIGGFA 253 (315)
T ss_dssp EEE---TTEEEEEEEEE
T ss_pred EEE---CCEEEEECCcc
Confidence 332 56777777753
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.019 Score=60.97 Aligned_cols=192 Identities=9% Similarity=0.104 Sum_probs=114.3
Q ss_pred ceEEEEEccCCCEEEEE------------ECCCcEEEEeCCCC--ceE-EEEec-----cCCCEEEEEEcc--CCC-EEE
Q 005123 146 SINRVLWTPTGRRLITG------------SQSGEFTLWNGQSF--NFE-MILQA-----HDHAIRSMVWSH--NDN-WMV 202 (713)
Q Consensus 146 ~V~~v~~spdg~~Latg------------s~dg~V~Iwd~~t~--~~~-~~l~~-----h~~~V~sl~~sp--dg~-~L~ 202 (713)
....+++.++|..++++ ..+|.|.++|.++. +.. ..+.+ .......|.+.. +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566677777544443 16899999998742 221 12222 224567777765 354 455
Q ss_pred EEe-C--CCcEEEEEcCCCc----eeeeecc-CCCCeeEEEEecCCCEEEEEEC-----------------CCeEEEEEc
Q 005123 203 SGD-D--GGAIKYWQNNMNN----VKANKSA-HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDF 257 (713)
Q Consensus 203 sgs-~--DG~I~vwdl~~~~----~~~~~~~-~~~~V~~l~fs~dg~~Las~s~-----------------Dg~I~iwDl 257 (713)
++. . +..|.||+++... .+..+.. .-...+++.+.++|.++++... .|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 543 2 4678888776532 1222222 2246789999999987776541 244555554
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--EEEEccCCCCeEEEEEcC-CCCEEEEEEC
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASK 332 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t-~~~--~~~~~~h~~~I~si~fsp-dg~~Latgs~ 332 (713)
++. ..+...-..-+.|+|++|++.|+++. ..+.|..||++. ++. .+.+ ........+++.. +|++.+++..
T Consensus 211 --~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 322 22323345678999999998877765 467899999864 332 2233 2346678899998 5987776654
Q ss_pred C-CeEEEEEC
Q 005123 333 D-QIIKLYDI 341 (713)
Q Consensus 333 D-g~I~IwDl 341 (713)
+ +.|..||-
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 4 24444443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.05 Score=57.54 Aligned_cols=230 Identities=10% Similarity=0.103 Sum_probs=125.6
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE------eccCCCEEEEEEccC---CCEEEEE---eCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHN---DNWMVSG---DDGGA 209 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l------~~h~~~V~sl~~spd---g~~L~sg---s~DG~ 209 (713)
..-..-+.|+|.+||++|++-...|.|++++..+++..... .........|+|+|+ +.+|++. ..++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34456789999999986666655899999987655543221 123566889999985 4455543 23455
Q ss_pred EEEEEcCCC----------ceee-eec-cCCCCeeEEEEecCCCEEEEEEC-------------CCeEEEEEcCCC----
Q 005123 210 IKYWQNNMN----------NVKA-NKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC---- 260 (713)
Q Consensus 210 I~vwdl~~~----------~~~~-~~~-~~~~~V~~l~fs~dg~~Las~s~-------------Dg~I~iwDl~~~---- 260 (713)
|.-|.+..+ +.+. .+. ........|.|.+|+.++++.++ .|.|.-.+....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665541 1111 111 11223467999999987777543 345555554322
Q ss_pred ----eeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce------------------EEEEccCCCCeEE
Q 005123 261 ----QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRE------------------LCSFHGHKNMVLC 317 (713)
Q Consensus 261 ----~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~------------------~~~~~~h~~~I~s 317 (713)
.....-.++ .....++|++++.++++-. .|+.-.|.-+..+.. +..+..+......
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 111111233 3466899999876554432 222222222222211 1222222234567
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCee----EEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~~~----l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++|. ++..++.....+.|....++.... ...+.+....+..|+..+ ++.++++.+
T Consensus 268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp EEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred eEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 7776 455555555566676667654432 222333346788888888 565555443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.64 E-value=0.063 Score=65.94 Aligned_cols=274 Identities=10% Similarity=0.065 Sum_probs=151.7
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCE-EEEEEccCC--CEEEEEeCCCcEEEEEcCCCce-e
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI-RSMVWSHND--NWMVSGDDGGAIKYWQNNMNNV-K 221 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V-~sl~~spdg--~~L~sgs~DG~I~vwdl~~~~~-~ 221 (713)
+|.-..|...+..-+.++.+.-..+|..+ ++.... ......+ ....|+... +-++..+ ++.++|..++.... .
T Consensus 653 pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp CCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE
T ss_pred ceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee
Confidence 44444444445444444445555555443 222222 1112223 334454332 3455444 45688887754322 1
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECC-------------------------------------------------CeE
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDD-------------------------------------------------TTV 252 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~D-------------------------------------------------g~I 252 (713)
.........+..++++++.+.++++..+ ..|
T Consensus 730 ~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i 809 (1158)
T 3ei3_A 730 IRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNL 809 (1158)
T ss_dssp EEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEE
T ss_pred EEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEE
Confidence 1112345677788888777665443311 236
Q ss_pred EEEEcCCCeeEEEEcc-CCCceEEEE---EcCC-CCEEEEEe----------CCCcEEEEECCCCceEEEE-ccCCCCeE
Q 005123 253 KVWDFARCQEERSLTG-HGWDVKSVD---WHPT-KSLLVSGG----------KDSLVKLWDAKSGRELCSF-HGHKNMVL 316 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~-h~~~V~sl~---~spd-g~~L~sgs----------~Dg~I~IwDl~t~~~~~~~-~~h~~~I~ 316 (713)
+++|-.+.+.+..+.- ....+.|++ |..+ ..+|++|+ ..|.|++|++.+++..... +..++.|+
T Consensus 810 ~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~ 889 (1158)
T 3ei3_A 810 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVY 889 (1158)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEE
T ss_pred EEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCE
Confidence 6666666665544432 223344444 3322 46888886 3477999998744322211 22467788
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCC-eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKD-VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~-V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
+++-- +| +|++|- ..+|+|||+...+.+. ....+..- +..+.. .+++|+.|..-..|.++..+.....+..+
T Consensus 890 al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~---~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT---KGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE---ETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec---cCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 88743 45 455443 5789999998665444 11112211 224433 46788899888888777654433333332
Q ss_pred --cccCCCeEEEEEcCCCcEEEE-eCCcEEEEecCCC
Q 005123 395 --NVHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRNRP 428 (713)
Q Consensus 395 --~~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~ 428 (713)
..+...++++.+-.++.++++ .++.+.+..++..
T Consensus 964 a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred EeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 334567889999877777776 8899999988764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.042 Score=60.43 Aligned_cols=105 Identities=10% Similarity=0.205 Sum_probs=62.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--eecc------CCCCeeEEEEecC---CCEEEEEEC------
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKSA------HKESVRDLSFCRT---DLKFCSCSD------ 248 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~--~~~~------~~~~V~~l~fs~d---g~~Las~s~------ 248 (713)
-.....|+|.++|+++++-...+.|++++..++.... .+.. ....+..|+|+++ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3466799999999877665444578888765554322 2211 2356679999995 555554442
Q ss_pred -------CCeEEEEEcCCC--e-----eEE-EEc-cCCCceEEEEEcCCCCEEEEEeC
Q 005123 249 -------DTTVKVWDFARC--Q-----EER-SLT-GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 249 -------Dg~I~iwDl~~~--~-----~~~-~l~-~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
...|..|++... + .+. .+. ........|+|.+||+++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 1 111 121 11234789999999987776553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0012 Score=67.99 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=98.8
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCc---eEEEEe--ccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q 005123 155 TGRRLITGSQS-----GEFTLWNGQSFN---FEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNN 219 (713)
Q Consensus 155 dg~~Latgs~d-----g~V~Iwd~~t~~---~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D-----G~I~vwdl~~~~ 219 (713)
++++++.|+.+ ..+.+||..+.+ ....-. .......++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777754 468999988766 433321 11112222222 56677777643 358888988765
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCC-
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~D- 291 (713)
-...-..........+..-+++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence 333221111111111122266666666543 4688999887654332 1111122233333 46777777664
Q ss_pred ----CcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCe
Q 005123 292 ----SLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMK 345 (713)
Q Consensus 292 ----g~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~ 345 (713)
..|.+||+++.+-...- ........++.+ ++++++.|+.+ ..|.+||+++.+
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 46899999876543221 111112222333 66777777655 357888887644
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0039 Score=64.84 Aligned_cols=201 Identities=12% Similarity=0.126 Sum_probs=99.4
Q ss_pred cEEEEeCCCCceEEE-EeccCCCEEEEEEccCCCEEEEEeC----CC-------cEEEEEcCCCceeeeec--cCCCCee
Q 005123 167 EFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDD----GG-------AIKYWQNNMNNVKANKS--AHKESVR 232 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~-l~~h~~~V~sl~~spdg~~L~sgs~----DG-------~I~vwdl~~~~~~~~~~--~~~~~V~ 232 (713)
.+.+||..+.+.... +..........+...++.+++.|+. ++ .+.+||..+.+-...-. ......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~- 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF- 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-
Confidence 388999888765442 1111112222333446778888873 12 16778877765433211 111111
Q ss_pred EEEEecCCCEEEEEECC-------CeEEEEEcCCCeeEEEEc--cCCCceEEEEEcCCCCEEEEEeC------CCcEEEE
Q 005123 233 DLSFCRTDLKFCSCSDD-------TTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK------DSLVKLW 297 (713)
Q Consensus 233 ~l~fs~dg~~Las~s~D-------g~I~iwDl~~~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~------Dg~I~Iw 297 (713)
+++.. +++.++.|+.+ ..+.+||..+.+-...-. .......++. -++++++.|+. ...+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 56666777653 358888987764332211 1111112222 25666677654 2358999
Q ss_pred ECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeE--EEeecCCCCeEEEEEeCCCCC
Q 005123 298 DAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 298 Dl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l--~~~~~h~~~V~sl~fsp~~~~ 368 (713)
|+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++.
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~ 255 (318)
T 2woz_A 181 NPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL---AGS 255 (318)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE---TTE
T ss_pred cCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE---CCE
Confidence 9987653322 1111111222333 66777777643 35788998765422 222211222222322 467
Q ss_pred EEEEEECC
Q 005123 369 YFVSGSLD 376 (713)
Q Consensus 369 ~lasgs~D 376 (713)
+++.|+.+
T Consensus 256 i~v~GG~~ 263 (318)
T 2woz_A 256 LYAIGGFA 263 (318)
T ss_dssp EEEECCBC
T ss_pred EEEECCee
Confidence 77776654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0043 Score=63.96 Aligned_cols=181 Identities=9% Similarity=0.078 Sum_probs=94.8
Q ss_pred EEEEEeC--CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCeeEEEE--ccCCC
Q 005123 200 WMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSL--TGHGW 271 (713)
Q Consensus 200 ~L~sgs~--DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~~~~l--~~h~~ 271 (713)
+++.|+. ...+.+||..+++-...-..........+..-++..++.|+.+ ..+.+||..+.+-...- .....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4455554 3578888888765432211111111111122366667777654 67889998876543322 11122
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEEC---------CC
Q 005123 272 DVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK---------DQ 334 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~D------g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~---------Dg 334 (713)
....+.+ ++++++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+. ..
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence 2233333 56777777765 4589999987653322 1111112222222 6666666653 34
Q ss_pred eEEEEECCCCeeEEE--eecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 335 IIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
.+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..|.+||+.+.
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 589999987643222 2111122222332 56677777654 35888888665
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0013 Score=69.50 Aligned_cols=230 Identities=11% Similarity=0.027 Sum_probs=112.2
Q ss_pred CCCEEEEEEC-CCcEEEEeCCC--CceEEEEec-c---CCCEEEEEEccCCCEEEEEeC-C---------CcEEEEEcCC
Q 005123 155 TGRRLITGSQ-SGEFTLWNGQS--FNFEMILQA-H---DHAIRSMVWSHNDNWMVSGDD-G---------GAIKYWQNNM 217 (713)
Q Consensus 155 dg~~Latgs~-dg~V~Iwd~~t--~~~~~~l~~-h---~~~V~sl~~spdg~~L~sgs~-D---------G~I~vwdl~~ 217 (713)
++++++.|+. ...+.+||..+ .+.. .+.. . ...-.++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 5666666654 35688999864 3222 2211 1 111222222 5667777665 2 4688889887
Q ss_pred CceeeeeccC-CCCeeEEEEecCCCEEEEEECC---------------------------------------CeEEEEEc
Q 005123 218 NNVKANKSAH-KESVRDLSFCRTDLKFCSCSDD---------------------------------------TTVKVWDF 257 (713)
Q Consensus 218 ~~~~~~~~~~-~~~V~~l~fs~dg~~Las~s~D---------------------------------------g~I~iwDl 257 (713)
.+-....... .......++.-++++++.|+.+ ..|.+||.
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 7533322111 1122222222467777777754 57999998
Q ss_pred CCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC------CCcEEEEEC--CCCceEE--EEccCCCCeEEEEEcCCCC
Q 005123 258 ARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDA--KSGRELC--SFHGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 258 ~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~------Dg~I~IwDl--~t~~~~~--~~~~h~~~I~si~fspdg~ 325 (713)
.+.+-... +......-.+++.. ++++++.|+. ...+.+||+ .+.+-.. .+..........+...+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 87643322 22111111233332 4666666653 345778887 3332111 1111111111112223667
Q ss_pred EEEEEECC----------------------CeEEEEECCCC--eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC----
Q 005123 326 WVLTASKD----------------------QIIKLYDIRAM--KELESFRGHRKDVTALAWHPFHEEYFVSGSLDG---- 377 (713)
Q Consensus 326 ~Latgs~D----------------------g~I~IwDl~t~--~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG---- 377 (713)
+++.|+.+ ..+.+||+.+. +.+..+......-.++.+ ++++++.|+.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKA 331 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCE
Confidence 77777632 25788998754 344433332232233333 577888888653
Q ss_pred --cEEEEEcCCCCceE
Q 005123 378 --SIFHWLVGHETPQV 391 (713)
Q Consensus 378 --~I~Iwd~~~~~~~~ 391 (713)
.|.++++++++...
T Consensus 332 ~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEC-CCSCEE
T ss_pred eeeEEEEEEcCcEeEe
Confidence 35556776655433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0043 Score=63.87 Aligned_cols=173 Identities=12% Similarity=0.083 Sum_probs=88.9
Q ss_pred CcEEEEEcCCCceeeeeccCCCCe-eEEEEecCCCEEEEEECC-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEc
Q 005123 208 GAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWH 279 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~~~~~V-~~l~fs~dg~~Las~s~D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~s 279 (713)
..+.+||+.+.+-...-....... .+++. -++..++.|+.+ ..+.+||..+.+-... +.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 357778877765332211111111 12222 256666666644 3588999877653322 1111122233333
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCe
Q 005123 280 PTKSLLVSGGKDS-----LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK-------DQIIKLYDIRAMK 345 (713)
Q Consensus 280 pdg~~L~sgs~Dg-----~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~-------Dg~I~IwDl~t~~ 345 (713)
++++++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+. ...+.+||+.+.+
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 467777777553 478899887653322 1111122222233 5666666653 2458999998754
Q ss_pred eEE--EeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCCC
Q 005123 346 ELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHET 388 (713)
Q Consensus 346 ~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~~ 388 (713)
-.. .+.........+.+ ++.+++.|+.+ ..|.+||+.+..
T Consensus 185 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 332 22211222223332 56777777764 368889986653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.049 Score=59.92 Aligned_cols=105 Identities=11% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec--------cCCCEEEEEEccC---CCEEEEEeC------
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHN---DNWMVSGDD------ 206 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~--------h~~~V~sl~~spd---g~~L~sgs~------ 206 (713)
-...+.|+|.+||+++++-...+.|++++..+++....... ....+..|+|+|+ +.+|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34678999999998666654445799998665544322211 2456779999996 566655432
Q ss_pred -------CCcEEEEEcCCC-------ceeee-ec-cCCCCeeEEEEecCCCEEEEEEC
Q 005123 207 -------GGAIKYWQNNMN-------NVKAN-KS-AHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 207 -------DG~I~vwdl~~~-------~~~~~-~~-~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
...|.-|+++.. +.+.. +. ........|+|.+|+.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555554322 11111 11 11234788999999987776553
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.085 Score=56.62 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=144.0
Q ss_pred CCEEEEEECCCcEEEEeCCC--------CceEEEEe---c-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-----
Q 005123 156 GRRLITGSQSGEFTLWNGQS--------FNFEMILQ---A-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----- 218 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t--------~~~~~~l~---~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~----- 218 (713)
.+.++.-..||+|+.|-... ........ . ....|..|+. .....+.-..||.|..|-.+..
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 34456666778888884322 11111111 0 1224555543 3456666678899999954321
Q ss_pred ---c---eeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-----------eeEEEEcc-CCCceEEEEEc
Q 005123 219 ---N---VKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----------QEERSLTG-HGWDVKSVDWH 279 (713)
Q Consensus 219 ---~---~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~-----------~~~~~l~~-h~~~V~sl~~s 279 (713)
+ ....+. .....+..++++......++.+.||.|+.|-.... .....+.. ....|..|+..
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 0 111111 12234555667666677777888999999965321 11122222 12357777665
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-Cc----------eEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKS-GR----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t-~~----------~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--- 344 (713)
....++...||.|+.|-... ++ ....+.. ....|..|+......+.++...|+.|+.|-....
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 45666677899999996532 11 1111111 2345667766443467777889999999975421
Q ss_pred --------eeEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------c---eEEEecccCCCeEEE
Q 005123 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDL 404 (713)
Q Consensus 345 --------~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------~---~~~~~~~h~~~V~~l 404 (713)
.....+.. ....|..|+. +....++-..||.|+.|=..... . ...+.......|..|
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~i 322 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAI 322 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEE
Confidence 11111221 2234777765 44566667889999999763211 0 111111123467777
Q ss_pred EEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 405 AWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 405 ~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
+......++.+.|+.|..|=.+..+..
T Consensus 323 a~G~~h~~al~~~G~v~~wG~n~~GqL 349 (389)
T 3kci_A 323 ATGSLHCVCCTEDGEVYTWGDNDEGQL 349 (389)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred EeccCeEEEECCCCCEEEeeCCCCCcC
Confidence 776666666679999999988766553
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.04 Score=58.46 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=102.5
Q ss_pred CCCcEEEEEcCCC--cee-eeecc-----CCCCeeEEEEec--CCC-EEEEEEC---CCeEEEEEcCCC--ee--EEEEc
Q 005123 206 DGGAIKYWQNNMN--NVK-ANKSA-----HKESVRDLSFCR--TDL-KFCSCSD---DTTVKVWDFARC--QE--ERSLT 267 (713)
Q Consensus 206 ~DG~I~vwdl~~~--~~~-~~~~~-----~~~~V~~l~fs~--dg~-~Las~s~---Dg~I~iwDl~~~--~~--~~~l~ 267 (713)
.+|.|.++|.++. +.. ..+.+ ..-....|.+.. ++. +|+++.. +.+|.+|+++.. .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998742 221 11121 123567777766 343 4555532 467888877543 21 22333
Q ss_pred c-CCCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEE
Q 005123 268 G-HGWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 268 ~-h~~~V~sl~~spdg~~L~sgs~-----------------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+ .....+++.+.++|.+.++... .+.|..||. ++ +..+...-..-+.|+||+|+++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 2 2346889999999987776541 244555554 33 2233323455789999999988887
Q ss_pred EE-CCCeEEEEECCC-Ce--eEEEeecCCCCeEEEEEeCCCCCEEEEEECC-CcEEEEE
Q 005123 330 AS-KDQIIKLYDIRA-MK--ELESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWL 383 (713)
Q Consensus 330 gs-~Dg~I~IwDl~t-~~--~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G~I~Iwd 383 (713)
+. ..+.|+.||+.. ++ ....+. .....-.+++..+++++++++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 65 567899999863 32 223342 345567888876237777766544 3444444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.004 Score=65.71 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=109.3
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEecc-CCCEEEEEE--ccCCCEEEEE--eCCCcEEEEEcCCCceeeeeccC----
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVW--SHNDNWMVSG--DDGGAIKYWQNNMNNVKANKSAH---- 227 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~--spdg~~L~sg--s~DG~I~vwdl~~~~~~~~~~~~---- 227 (713)
.++++++.||.|+-+|.++++.+-.+... ...+....- ...+..++++ +.||.|..++.+++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47899999999999999999988887654 122221110 0112234433 58999999998887544333211
Q ss_pred CCCeeE---EEE-----ecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCC-------ceEEEEEc-----CCCCEEEE
Q 005123 228 KESVRD---LSF-----CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWH-----PTKSLLVS 287 (713)
Q Consensus 228 ~~~V~~---l~f-----s~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~-------~V~sl~~s-----pdg~~L~s 287 (713)
...+.. ..+ ...+..+++++.++++...|+++++.+..+..... ...|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 000 01456788999999999999999999988864321 01111111 12456777
Q ss_pred EeCCCcEEEEECCCCceEEEEc-----cCCCC--e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE
Q 005123 288 GGKDSLVKLWDAKSGRELCSFH-----GHKNM--V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~-----~h~~~--I-~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~ 348 (713)
+..+..|.+.+ ++++ +..++ ..... + .+..++.|+.+ ++++.||.|.-+|.++++.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777 4453 21111 00000 0 00001224565 557899999999999888776
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0047 Score=63.97 Aligned_cols=183 Identities=10% Similarity=0.012 Sum_probs=93.5
Q ss_pred CCCEEEEEeCC----CcEEEEEcCCCceeeeeccCCCCe-eEEEEecCCCEEEEEEC----C-----CeEEEEEcCCCee
Q 005123 197 NDNWMVSGDDG----GAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSD----D-----TTVKVWDFARCQE 262 (713)
Q Consensus 197 dg~~L~sgs~D----G~I~vwdl~~~~~~~~~~~~~~~V-~~l~fs~dg~~Las~s~----D-----g~I~iwDl~~~~~ 262 (713)
++.+++.|+.+ ..+.+||..+.+-...-....... .+++. -++..++.|+. + ..+.+||..+.+-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 44555555521 357788877665332211111111 12222 25666666554 2 4688899877643
Q ss_pred EEE--EccCCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 263 ERS--LTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 263 ~~~--l~~h~~~V~sl~~spdg~~L~sgs~D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 221 1111222233333 56677776643 3588999887643221 1111122223333 66777777654
Q ss_pred -----CeEEEEECCCCeeEE--EeecCCCCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcCCC
Q 005123 334 -----QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (713)
Q Consensus 334 -----g~I~IwDl~t~~~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~D-----G~I~Iwd~~~~ 387 (713)
..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||+.+.
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 468999988654322 11111122233333 56777777664 46889998665
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=97.33 E-value=0.011 Score=60.71 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=128.5
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|..|+.... +.+.-. ||.|+.|-......+..-......|..|+...+ ..++. . ||.|..|-.+....+..-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 3555554433 223235 888999975442211111112345667776533 23333 4 8999999765432221111
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.....|..|+...+ ..+.-. ||.|+.|-......+-.-......|..|+...+. .+.-. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence 22346777776543 333344 9999999765432221111233467777765332 33334 799999976542222
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
..-......|..|+...+ +.++- .||.|+.|-......+..-......|..|+.. ....++.. ||.|+.|=.+
T Consensus 173 g~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G---~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASG---EWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEC---SSCEEEEE-TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcC---CCEEEEEE-CCEEEEecCC
Confidence 111112345777765433 33333 59999999765432221111122457777754 33333334 9999999765
Q ss_pred CCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcE
Q 005123 386 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTT 420 (713)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v 420 (713)
..... .+ ...|.+|+......+..+.|+..
T Consensus 246 ~~gq~-~v----~~~v~~iaaG~~h~~al~~~~~~ 275 (282)
T 3qhy_B 246 RTAPS-SV----QSGVSSIEAGPNAAYALKGGSGS 275 (282)
T ss_dssp CCCCG-GG----SSCEEEEEECSSCEEEEEC----
T ss_pred CCccc-cC----CCCcEEEEECcCeEEEEecCCCC
Confidence 44321 11 23577777666665555544433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0061 Score=63.22 Aligned_cols=188 Identities=9% Similarity=0.018 Sum_probs=96.6
Q ss_pred EccCCCEEEEEEC----C-------CcEEEEeCCCCceEEEEeccC--CCEEEEEEccCCCEEEEEeCC--------CcE
Q 005123 152 WTPTGRRLITGSQ----S-------GEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDG--------GAI 210 (713)
Q Consensus 152 ~spdg~~Latgs~----d-------g~V~Iwd~~t~~~~~~l~~h~--~~V~sl~~spdg~~L~sgs~D--------G~I 210 (713)
..-++++++.|+. + ..+.+||..+.+....-.... .....+.+ ++++++.|+.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceE
Confidence 3347778888873 1 227788988765432211111 11112222 56666676632 458
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C-----CeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCC
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTK 282 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D-----g~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg 282 (713)
.+||..+++-...-..........+..-+++.++.|+. + ..+.+||..+.+-... +........++.+ ++
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 197 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG 197 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred EEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC
Confidence 88998876533221111111111122235666666665 2 4689999887643221 1111122233333 56
Q ss_pred CEEEEEeCCC-----cEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCC--------------eEEEEEC
Q 005123 283 SLLVSGGKDS-----LVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQ--------------IIKLYDI 341 (713)
Q Consensus 283 ~~L~sgs~Dg-----~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg--------------~I~IwDl 341 (713)
++++.|+.++ .+.+||+.+.+-...- .........+.+ ++++++.|+.++ .|.+||+
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~ 275 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE 275 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC
Confidence 7778877654 4889999876433221 111122223333 667777776532 3677777
Q ss_pred CCCe
Q 005123 342 RAMK 345 (713)
Q Consensus 342 ~t~~ 345 (713)
++.+
T Consensus 276 ~~~~ 279 (315)
T 4asc_A 276 EEKK 279 (315)
T ss_dssp TTTE
T ss_pred CCCh
Confidence 6644
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.03 Score=58.13 Aligned_cols=213 Identities=7% Similarity=0.026 Sum_probs=112.9
Q ss_pred cCCCEEEEEe--CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC--------------CeEEEEEcCC
Q 005123 196 HNDNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--------------TTVKVWDFAR 259 (713)
Q Consensus 196 pdg~~L~sgs--~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D--------------g~I~iwDl~~ 259 (713)
.++..|+... .++.|...+.+....... .. .. +--++.++.+|+-+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l-~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKL-SN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEE-EE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEc-cC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3566666553 245555555544433222 11 11 23446688887776543 4677778776
Q ss_pred CeeEEEEccCCCceEEEEEcCCCCEEEEEe--C--CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC-CC
Q 005123 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--K--DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQ 334 (713)
Q Consensus 260 ~~~~~~l~~h~~~V~sl~~spdg~~L~sgs--~--Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~-Dg 334 (713)
.+...... . . +..|++++++|+... . +..|+..+++... ...+..+.. ..|+++++.|+..+. +.
T Consensus 98 ~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65433322 1 1 225666788888776 3 3456666776433 334433322 345668888886665 67
Q ss_pred eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcE
Q 005123 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
.|.+.++..+.....+. .... ..++| ++.+|+-...++ .|..-+++... ...+. +..+.. |++++..
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt--~~~~~~--~~~~g~~ 236 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPN--PVVLT--EANIEH--YNVYGSL 236 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCC--CEECS--CSCEEE--EEEETTE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCC--eEEEe--CCCcce--EEECCCE
Confidence 89999988766544433 2222 34567 455555444432 45444543332 33332 233433 5555544
Q ss_pred E--EEeCCcEEEEecCCCCCcccc
Q 005123 413 L--CSNDHTTKFWCRNRPGDTARD 434 (713)
Q Consensus 413 l--aS~Dg~v~iWd~~~~~~~~~~ 434 (713)
| ++..+.-.||.++..+...+.
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~ 260 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKE 260 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEE
T ss_pred EEEEECCCCcEEEEEECCCCccEE
Confidence 4 333333567777666655433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.042 Score=56.33 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=127.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
..|..|+... .+.+.-. ||.|..|-.+....+..-......|..|+...+.. ++. . ||.|+.|-....-.+-.-
T Consensus 24 ~~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3566776643 2333335 89999997654322211122334677777654333 333 4 899999986543221111
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
......|..|+...+ ..++-. ||.|+.|-......+-.-......|..|+... .+.++-. ||.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCC
Confidence 112346888877633 344445 89999997654222111111234577666543 3333344 79999997764322
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
+..-......|..|+.. ....+.- .||.|+.|=.+....+- +.......|..|+-..+..++.+ |+.|..|=.+
T Consensus 172 lg~p~~~~~~v~~i~~G---~~hs~al-~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 172 TTVPAEAQSGVDDVAGG---IFHSLAL-KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp TSCCGGGGSSEEEEEEC---SSEEEEE-ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred CCCceecCCCeEEEEec---CCEEEEE-ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 22111123567777764 3333333 59999999875543221 11112346888887777777777 9999999877
Q ss_pred CCCC
Q 005123 427 RPGD 430 (713)
Q Consensus 427 ~~~~ 430 (713)
..+.
T Consensus 246 ~~gq 249 (282)
T 3qhy_B 246 RTAP 249 (282)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.017 Score=59.83 Aligned_cols=188 Identities=10% Similarity=0.079 Sum_probs=94.3
Q ss_pred EccCCCEEEEEEC----CC-------cEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCC-------CcEE
Q 005123 152 WTPTGRRLITGSQ----SG-------EFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG-------GAIK 211 (713)
Q Consensus 152 ~spdg~~Latgs~----dg-------~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~D-------G~I~ 211 (713)
...++++++.|+. ++ .+.+||..+.+....-. ........+.+ ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456777778773 11 27788887765433211 11111222222 56777777754 3477
Q ss_pred EEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCC
Q 005123 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~ 283 (713)
+||..+.+-...-..........+..-+++.++.|+. ...+.+||+.+.+-... +........++.+ +++
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK 208 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE
Confidence 8888776543321111111111112235666666653 24589999987653322 1111122233333 467
Q ss_pred EEEEEeCC-----CcEEEEECCCCceEEE--EccCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 005123 284 LLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIR 342 (713)
Q Consensus 284 ~L~sgs~D-----g~I~IwDl~t~~~~~~--~~~h~~~I~si~fspdg~~Latgs~D--------------g~I~IwDl~ 342 (713)
+++.|+.+ ..+.+||+++.+-... +.........+.+ ++++++.|+.+ ..|.+||+.
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence 77777653 3477899887643221 1111111222222 56677776643 357777877
Q ss_pred CCe
Q 005123 343 AMK 345 (713)
Q Consensus 343 t~~ 345 (713)
+.+
T Consensus 287 ~~~ 289 (318)
T 2woz_A 287 KKE 289 (318)
T ss_dssp TTE
T ss_pred CCE
Confidence 654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.42 Score=52.52 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=124.5
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCc---eeeeec---------cCCCCeeEEEEecC----CCEEEEEEC-
Q 005123 187 HAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNN---VKANKS---------AHKESVRDLSFCRT----DLKFCSCSD- 248 (713)
Q Consensus 187 ~~V~sl~~spdg~-~L~sgs~DG~I~vwdl~~~~---~~~~~~---------~~~~~V~~l~fs~d----g~~Las~s~- 248 (713)
..-..|+|.+|++ .|+++...|.|++++.+... .+..+. ........|+|+++ +.++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 56677888999999754321 111111 11356788999986 333333222
Q ss_pred -C----------CeEEEEEcCC----------CeeEEEEc--cCCCceEEEEEcCCCCEEEEEeCCC-------------
Q 005123 249 -D----------TTVKVWDFAR----------CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS------------- 292 (713)
Q Consensus 249 -D----------g~I~iwDl~~----------~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~Dg------------- 292 (713)
+ ..|.-|.+.. .+.+..+. ........|+|.+|+.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1444465532 12233322 1223468999999998777766533
Q ss_pred ----cEEEEECCCC---------------------ceEEEEccCCCCeEEEEEcCC-----CC-EEEEEECCC----eEE
Q 005123 293 ----LVKLWDAKSG---------------------RELCSFHGHKNMVLCVKWNQN-----GN-WVLTASKDQ----IIK 337 (713)
Q Consensus 293 ----~I~IwDl~t~---------------------~~~~~~~~h~~~I~si~fspd-----g~-~Latgs~Dg----~I~ 337 (713)
+|.-.|.+.. ..+.. .+|. ....++|++. |+ +++++...+ .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333333321 01111 1222 2456889986 34 344332212 123
Q ss_pred EEECCCCe------eEEEeecCC-CCeEEEEEeCCCCC------EEEEEECCCcEEEEEcCCCCc--eEEEe-c------
Q 005123 338 LYDIRAMK------ELESFRGHR-KDVTALAWHPFHEE------YFVSGSLDGSIFHWLVGHETP--QVEIH-N------ 395 (713)
Q Consensus 338 IwDl~t~~------~l~~~~~h~-~~V~sl~fsp~~~~------~lasgs~DG~I~Iwd~~~~~~--~~~~~-~------ 395 (713)
|..+..+. .+..+..|. ..++.+.|-. +.. .++.+...+.|....++.... ....+ .
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~-G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYR-GCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECC-CSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEe-CCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 44443322 334444221 4678888854 221 244555557776666543321 11121 1
Q ss_pred --ccCCCeEEEEEcCCCcEEEEeC-------CcEEEEecCCCC
Q 005123 396 --VHDNTVWDLAWHPIGYLLCSND-------HTTKFWCRNRPG 429 (713)
Q Consensus 396 --~h~~~V~~l~~spdg~~laS~D-------g~v~iWd~~~~~ 429 (713)
.....+.++...+||.+.++.| ..-+||.+..+.
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p~ 373 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPK 373 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECTT
T ss_pred cccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCcc
Confidence 1135789999999997776644 567899886443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.042 Score=59.15 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=91.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccC----CCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe-----------
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAH----KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----------- 261 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~----~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~----------- 261 (713)
++..|+++- ++.||.-++......+.+... -..|..+..+++|++||..+ +.+|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 356666665533322222221 23678899999999999886 4588888875221
Q ss_pred -eEEEEcc------CCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCCCce-EEEEc---------cCCCCeEEEEEc
Q 005123 262 -EERSLTG------HGWDVKSVDWHP---TKSLLVSGGKDSLVKLWDAKSGRE-LCSFH---------GHKNMVLCVKWN 321 (713)
Q Consensus 262 -~~~~l~~------h~~~V~sl~~sp---dg~~L~sgs~Dg~I~IwDl~t~~~-~~~~~---------~h~~~I~si~fs 321 (713)
..+.+.- ....|..+.|+| .+..|++-..|+.|++||+..... ...++ .....|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1122321 246799999999 456899999999999999985221 11222 223568999999
Q ss_pred CCCCEEEEEE--CCCeEEEE
Q 005123 322 QNGNWVLTAS--KDQIIKLY 339 (713)
Q Consensus 322 pdg~~Latgs--~Dg~I~Iw 339 (713)
.++-.|++.+ ++|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777765 77777653
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.27 Score=51.02 Aligned_cols=187 Identities=8% Similarity=0.080 Sum_probs=115.6
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCceE-------EEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---C----
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFNFE-------MILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---N---- 218 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~~~-------~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~---~---- 218 (713)
++..++++.+.+|.|+-..+...+.. ..+. ...+.+..+......+.++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45668899999999998875543211 1111 1234455555555667788888889887776431 1
Q ss_pred --ce---eeeeccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEcCCCC
Q 005123 219 --NV---KANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 219 --~~---~~~~~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
.. ...+ ...+.|.++.... ++.+|+..+.+|.++...+.. +.....+.. .+.+..+....++.
T Consensus 86 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 10 0111 1234565554443 467889999999999998743 222223333 45666666655566
Q ss_pred EEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 284 LLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.|+..+.+|.+..+++.. |.....+. ....|.++....++..|++.+.+|.++..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788889999999987753 11122222 244566666555667788999999999998753
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.07 Score=57.46 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=96.3
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccC----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------
Q 005123 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------- 303 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~------- 303 (713)
..+.++..++.+- ++.||.-++......+.++.. ...|..+..+++|++||..+. ..|.|..+-.+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3445666666554 467887777644444444432 236888999999999998865 678888876321
Q ss_pred -----eEEEEcc------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCe--eE--------EEeecCCCCeEE
Q 005123 304 -----ELCSFHG------HKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMK--EL--------ESFRGHRKDVTA 359 (713)
Q Consensus 304 -----~~~~~~~------h~~~I~si~fsp---dg~~Latgs~Dg~I~IwDl~t~~--~l--------~~~~~h~~~V~s 359 (713)
..+.+.- ....|..+.|+| .+..|++-..|+.|++||+.... .. ..+......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1122321 246799999999 46789999999999999998521 11 111223367999
Q ss_pred EEEeCCCCCEEEEEE--CCCcEEEE
Q 005123 360 LAWHPFHEEYFVSGS--LDGSIFHW 382 (713)
Q Consensus 360 l~fsp~~~~~lasgs--~DG~I~Iw 382 (713)
++|.. ++-.|...+ .+|.|+-.
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEE
Confidence 99998 565555544 77888653
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.69 Score=49.87 Aligned_cols=235 Identities=11% Similarity=-0.042 Sum_probs=130.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc------------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~------------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
..|..|+. -+.+.+.-..||.|..|-.+... ...........|..|+. -....++...||.|+.
T Consensus 75 ~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~--G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--GDSHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc--CcCeEEEEeCCCeEEE
Confidence 34666655 35667777889999999643211 00111112345665555 3445566678999999
Q ss_pred EEc--CC-Ce---------eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c------------------
Q 005123 255 WDF--AR-CQ---------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R------------------ 303 (713)
Q Consensus 255 wDl--~~-~~---------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~------------------ 303 (713)
|-. .. ++ ...........|..|+.. ..+.++-..||.|+.|-.... +
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 975 22 11 111111233457777765 445666678999999954321 0
Q ss_pred ---eEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------eeEEEeecCCCCeEEEEEeCCCCC
Q 005123 304 ---ELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-----------KELESFRGHRKDVTALAWHPFHEE 368 (713)
Q Consensus 304 ---~~~~~-~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-----------~~l~~~~~h~~~V~sl~fsp~~~~ 368 (713)
....+ ......|..|+... ...++.-+.|+.|+.|-.... ....-.......|..|+. +..
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~---G~~ 304 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG---GQH 304 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE---CSS
T ss_pred cccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc---ccC
Confidence 01111 11223455555432 122333357888999864421 111111112346777765 556
Q ss_pred EEEEEECCCcEEEEEcCCCC--------c---eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 369 YFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~--------~---~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
..+....||.|+.|=.+... . .......-...|..|+......++.+.|+.|..|=.+..+..
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCS
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCC
Confidence 77777889999999653211 1 111222222368888877776667789999999987766543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0074 Score=63.68 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=93.7
Q ss_pred CCCEEEEEEC-C---------CcEEEEeCCCCceEEEEecc---CCCEEEEEEccCCCEEEEEeCC--------------
Q 005123 155 TGRRLITGSQ-S---------GEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDDG-------------- 207 (713)
Q Consensus 155 dg~~Latgs~-d---------g~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~spdg~~L~sgs~D-------------- 207 (713)
++++++.|+. + ..+.+||..+.+....-... .....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5666666665 2 46899998876544322111 11222233 467778888765
Q ss_pred -------------------------CcEEEEEcCCCceeeeeccCC-CCe-eEEEEecCCCEEEEEEC------CCeEEE
Q 005123 208 -------------------------GAIKYWQNNMNNVKANKSAHK-ESV-RDLSFCRTDLKFCSCSD------DTTVKV 254 (713)
Q Consensus 208 -------------------------G~I~vwdl~~~~~~~~~~~~~-~~V-~~l~fs~dg~~Las~s~------Dg~I~i 254 (713)
..+.+||..+.+-...-.... ... .+++.. +++.++.|+. ...+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence 468889988765333211111 111 233332 5556666543 345777
Q ss_pred EEc--CCCeeEE--EEccCCC--ceEEEEEcCCCCEEEEEeCC----------------------CcEEEEECCCCc--e
Q 005123 255 WDF--ARCQEER--SLTGHGW--DVKSVDWHPTKSLLVSGGKD----------------------SLVKLWDAKSGR--E 304 (713)
Q Consensus 255 wDl--~~~~~~~--~l~~h~~--~V~sl~~spdg~~L~sgs~D----------------------g~I~IwDl~t~~--~ 304 (713)
||+ .+.+-.. .+..... ...++.+ ++++++.|+.+ ..+.+||+++.+ .
T Consensus 222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~ 299 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK 299 (357)
T ss_dssp EECC---CEEEECCCSSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred EEecCCCCcEEecCCCCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence 877 3332211 1111111 1112332 46677777632 247889988654 3
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCC------eEEEEECCCCeeEEE
Q 005123 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------IIKLYDIRAMKELES 349 (713)
Q Consensus 305 ~~~~~~h~~~I~si~fspdg~~Latgs~Dg------~I~IwDl~t~~~l~~ 349 (713)
+..+......-.++. -++++++.|+.++ .|.++++++.+.+..
T Consensus 300 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 300 SGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred CCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 333322222223333 3677888888553 466668877665543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.17 Score=53.00 Aligned_cols=197 Identities=8% Similarity=0.032 Sum_probs=120.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEe---CCCC------ceEE---EEeccCCCEEEEEEcc---CCCEEEEEeCCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSF------NFEM---ILQAHDHAIRSMVWSH---NDNWMVSGDDGG 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd---~~t~------~~~~---~l~~h~~~V~sl~~sp---dg~~L~sgs~DG 208 (713)
.+.+..+......+.|+.-+..|.++... +... ..+. .+. ....|.++.... +..++++.+.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 44566666666677788888888876654 3221 1110 112 234555554433 478999999999
Q ss_pred cEEEEEcCCCc-------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcC--CC---------eeEEEEccCC
Q 005123 209 AIKYWQNNMNN-------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RC---------QEERSLTGHG 270 (713)
Q Consensus 209 ~I~vwdl~~~~-------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~--~~---------~~~~~l~~h~ 270 (713)
.|+...+..-. ....+.. .+.+..+........|+..+.+|.+..+.+. .- .....+. ..
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-ID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TT
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CC
Confidence 99998765421 1122222 4566666666677788999999999888776 21 1111222 34
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceEEE--EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-------RELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-------~~~~~--~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl 341 (713)
..|.++....++..|+..+..|.++.-.+... +-+.. +......+..+....+...|+..+.+|.+..+++
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 56777777666778999999999998876432 11222 2222344555554445567777888888887876
Q ss_pred CC
Q 005123 342 RA 343 (713)
Q Consensus 342 ~t 343 (713)
..
T Consensus 278 ~~ 279 (327)
T 3uc1_A 278 RQ 279 (327)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.64 Score=49.49 Aligned_cols=211 Identities=11% Similarity=-0.011 Sum_probs=103.4
Q ss_pred CEEEEEECCCcEEEEeCCC-CceEEEE--eccCCCEEEEEEcc-CCCEEEEEeCCC----cEEEEEcCCCceeeeecc--
Q 005123 157 RRLITGSQSGEFTLWNGQS-FNFEMIL--QAHDHAIRSMVWSH-NDNWMVSGDDGG----AIKYWQNNMNNVKANKSA-- 226 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t-~~~~~~l--~~h~~~V~sl~~sp-dg~~L~sgs~DG----~I~vwdl~~~~~~~~~~~-- 226 (713)
..|++|+..| +.+++... ++.-..+ ......|.+|++.+ +...|+++...| .|... .+.++....+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 4677888777 55554332 2222211 22356799999988 334444444444 33332 222222111110
Q ss_pred ------------CCCCeeEEEEec-C-CCEEEEEECCCeEEEEEcCCCeeEEEEcc-------------------CCCce
Q 005123 227 ------------HKESVRDLSFCR-T-DLKFCSCSDDTTVKVWDFARCQEERSLTG-------------------HGWDV 273 (713)
Q Consensus 227 ------------~~~~V~~l~fs~-d-g~~Las~s~Dg~I~iwDl~~~~~~~~l~~-------------------h~~~V 273 (713)
....|.+|++.+ + ...|.++...+.|...+- .++.-..+.. ....|
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112577888876 2 455666665665555432 2222112211 12357
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEcc-C------------CCCeEEEEEcCC-CCEEEEEECCCeEEE
Q 005123 274 KSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG-H------------KNMVLCVKWNQN-GNWVLTASKDQIIKL 338 (713)
Q Consensus 274 ~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h------------~~~I~si~fspd-g~~Latgs~Dg~I~I 338 (713)
.+|.+++. ...|+++..++.|...+ +.++.-..+.. . ...+.+|.++++ ...|++++..+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 89999873 44555555445454442 22333222211 0 134889999885 46677776554 544
Q ss_pred EECCCCeeEEEeec--CC---CCeEEEEEeCCCCCEEEEE
Q 005123 339 YDIRAMKELESFRG--HR---KDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 339 wDl~t~~~l~~~~~--h~---~~V~sl~fsp~~~~~lasg 373 (713)
.+- .++....+.. .. ..+.++++++.+...|.++
T Consensus 258 s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 258 MDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred eCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 442 2333222221 11 3457788876444444444
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.24 Score=52.86 Aligned_cols=257 Identities=10% Similarity=0.024 Sum_probs=122.5
Q ss_pred CCceEEEEEcc-CCCEEEEEECCC----cEEEEeCCCCceEEEEec--------------cCCCEEEEEEccC--CCEEE
Q 005123 144 RCSINRVLWTP-TGRRLITGSQSG----EFTLWNGQSFNFEMILQA--------------HDHAIRSMVWSHN--DNWMV 202 (713)
Q Consensus 144 ~~~V~~v~~sp-dg~~Latgs~dg----~V~Iwd~~t~~~~~~l~~--------------h~~~V~sl~~spd--g~~L~ 202 (713)
...|.+|++.+ +...|++++..| .|...+- .++.-..+.. ....|.+|++.+. .+.|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D-~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDD-GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESS-TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCC-CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999998 334455555554 4544432 2221111111 1125778898862 45566
Q ss_pred EEeCCCcEEEEEcCCCceeeeec-------------------cCCCCeeEEEEecC-CCEEEEEECCCeEEEEEcCCCee
Q 005123 203 SGDDGGAIKYWQNNMNNVKANKS-------------------AHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQE 262 (713)
Q Consensus 203 sgs~DG~I~vwdl~~~~~~~~~~-------------------~~~~~V~~l~fs~d-g~~Las~s~Dg~I~iwDl~~~~~ 262 (713)
++...+-|...+- .++....+. .....|.+|.+.+. ...|+++..++.|...+- .++.
T Consensus 133 ~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 6655555544422 222211111 01235778888863 345555554444444321 2222
Q ss_pred EEEEcc-C------------CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEcc--CC---CCeEEEEEcC-
Q 005123 263 ERSLTG-H------------GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQ- 322 (713)
Q Consensus 263 ~~~l~~-h------------~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~--h~---~~I~si~fsp- 322 (713)
-..+.. . ...+.+|.++++ ...|+++...+ |...+- .++.-..+.. .. ..+.++.+++
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 122111 0 134889999985 46677776544 554442 2333332221 11 3456788876
Q ss_pred CCCEEEEEEC-----------CCeEEEEECCC-CeeEEEee-cCC--C-----CeEEEEEeCCCCCEEEEEECCCcEEEE
Q 005123 323 NGNWVLTASK-----------DQIIKLYDIRA-MKELESFR-GHR--K-----DVTALAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 323 dg~~Latgs~-----------Dg~I~IwDl~t-~~~l~~~~-~h~--~-----~V~sl~fsp~~~~~lasgs~DG~I~Iw 382 (713)
+...|+++.. ++...||...+ ++....+. +.. . ....+++++.+...|+.++.++.|.+-
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3344555432 23345555443 23222221 111 0 123578877555556666666665433
Q ss_pred EcCCCCceEEEecccCCCeEEEEEc
Q 005123 383 LVGHETPQVEIHNVHDNTVWDLAWH 407 (713)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~s 407 (713)
.........+..+-..|.+|+|.
T Consensus 369 --~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 369 --ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp --SSTTSBCEEEECSCSCEEEEEEE
T ss_pred --CCCCCCceEcccCCCCeeEEEEe
Confidence 23333333333334467777764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.25 Score=54.76 Aligned_cols=225 Identities=9% Similarity=0.135 Sum_probs=133.9
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEeccC-------------------------CCEE--EEEEc---cCCCEEEEEeC-C
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAHD-------------------------HAIR--SMVWS---HNDNWMVSGDD-G 207 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h~-------------------------~~V~--sl~~s---pdg~~L~sgs~-D 207 (713)
+.+|+.+|.|+|+-+-+.+.++.+...+ +... .+++. -||++|++-+. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5678889999999999988887764211 1111 22222 25678888774 4
Q ss_pred CcEEEEEcCCCceeeeecc-CCCCeeEEEEe--cCCCEEEEEEC-------CCeE------------EEEEcCCCeeEEE
Q 005123 208 GAIKYWQNNMNNVKANKSA-HKESVRDLSFC--RTDLKFCSCSD-------DTTV------------KVWDFARCQEERS 265 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs--~dg~~Las~s~-------Dg~I------------~iwDl~~~~~~~~ 265 (713)
..|...+++..++...+.. ....+.++.|- ++..|++++++ ||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6788888888776555433 44577788876 57778777765 3321 1112222222111
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCC---------------cEEEEEC-------------------------CC----
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDS---------------LVKLWDA-------------------------KS---- 301 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg---------------~I~IwDl-------------------------~t---- 301 (713)
+. -......+...+++++.++.+.+. .|.++|+ +.
T Consensus 233 v~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 11 112333455566777777776532 1455544 22
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCee-------------EEEeecCCCCeEEEEEeCCCC
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE-------------LESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~-------------l~~~~~h~~~V~sl~fsp~~~ 367 (713)
+..+..+..-......+.++|||+++++++ .+.+|.|+|++.... +.... -.......+|.. ++
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G 389 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RG 389 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CC
Confidence 111111111122345688999999998776 577899999874221 12222 234567889998 66
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 005123 368 EYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~ 386 (713)
+.+.+.-.|..|..|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 6666777899999999954
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.085 Score=64.68 Aligned_cols=253 Identities=10% Similarity=0.112 Sum_probs=145.4
Q ss_pred CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE
Q 005123 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (713)
Q Consensus 165 dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La 244 (713)
+..|.|.|+.+...+.+.. -...+...+|..+.|+.-. ..++.|+|+++...+....- ...|.-=.|..+.. |+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eE
Confidence 3478888888765432211 1112334567777776554 68999999998877766543 45666667765444 33
Q ss_pred EEECCCeEEEEEcCCC-eeEEEEccC----CCceEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCceEEEEccCC
Q 005123 245 SCSDDTTVKVWDFARC-QEERSLTGH----GWDVKSVDWHPTKSLLVSGG-------KDSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~~-~~~~~l~~h----~~~V~sl~~spdg~~L~sgs-------~Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
..+ +..|+.|++... ...+.+..| ...|.....+++.++++..+ -.|.+.+|..+.+ ....+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 333 457999999642 333333333 45688888888999877654 3477889987643 334456666
Q ss_pred CCeEEEEEcC---CCCEEEEEEC---CCeEEEEECCCC---ee------EEEeec---CCCCeEEEEEeCCCCCEEEEEE
Q 005123 313 NMVLCVKWNQ---NGNWVLTASK---DQIIKLYDIRAM---KE------LESFRG---HRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 313 ~~I~si~fsp---dg~~Latgs~---Dg~I~IwDl~t~---~~------l~~~~~---h~~~V~sl~fsp~~~~~lasgs 374 (713)
.....+...- ....++.+.. .+.+.|.++... .. +..+-. -.+--.++..++ .-.++...+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEe
Confidence 5554444321 1223333322 268888888542 11 111111 123345666776 567788888
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC-CCcEEE-EeCCcEEEEecCC
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLC-SNDHTTKFWCRNR 427 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la-S~Dg~v~iWd~~~ 427 (713)
.-|.|.++|+.++..+..-. .....|...+-+. .+-+++ ...|.|.--.++.
T Consensus 278 k~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 99999999999887554332 2233444333332 223332 3555555444443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0066 Score=64.05 Aligned_cols=188 Identities=7% Similarity=0.035 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCeeEEEE---ecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEcc----
Q 005123 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSF---CRTDLKFCSC-SDDTTVKVWDFARCQEERSLTG---- 268 (713)
Q Consensus 198 g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~-~~V~~l~f---s~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~---- 268 (713)
+.++++++.||.|.-+|.++++.+..+.... ..+....- ..++..++.. +.||.|..+|..++.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 3578899999999999999999888875541 12221110 0122333333 6899999999988765544331
Q ss_pred CCCceEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCC-------CeEEEEEc-----CCCCEEE
Q 005123 269 HGWDVKS---VDW-----HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-------MVLCVKWN-----QNGNWVL 328 (713)
Q Consensus 269 h~~~V~s---l~~-----spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~-------~I~si~fs-----pdg~~La 328 (713)
....+.. ..+ ...+..+++++.++++...|+++|+.+.++..... ...|.... -.+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111221 001 01356789999999999999999999998864321 11122211 1245677
Q ss_pred EEECCCeEEEEECCCCeeEEEee-----cCCCC--eE-EEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 329 TASKDQIIKLYDIRAMKELESFR-----GHRKD--VT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 329 tgs~Dg~I~IwDl~t~~~l~~~~-----~h~~~--V~-sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
.+..+..|.+.+ ++++ +..+. ..... +. .-..+. ++.+ +.++.||.|..+|..++..
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCE
T ss_pred EecceEEEEEEC-CCCC-eEEEeccccccccccccccccccccc-CCcE-EEECCCCEEEEEECCCCcE
Confidence 777777777777 4453 22211 00000 00 000011 2344 4467888888888766654
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.82 Score=48.60 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=131.2
Q ss_pred EccCCCEEEEEECCCcEEEEeCCC---------CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C--
Q 005123 152 WTPTGRRLITGSQSGEFTLWNGQS---------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M-- 217 (713)
Q Consensus 152 ~spdg~~Latgs~dg~V~Iwd~~t---------~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~-- 217 (713)
+-++..++++.+.+|.|+--.+.+ +.....++ ..+.+..+........|+..+..|.+.-+... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999865322 12222333 35566666666666778878888887766532 1
Q ss_pred ----Cceeeee--ccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEcCC
Q 005123 218 ----NNVKANK--SAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWHPT 281 (713)
Q Consensus 218 ----~~~~~~~--~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~spd 281 (713)
+..+..+ -...+.|.++.... ++.+|+.++..|.++...+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1111111 12345666655442 456899999999999988643 222223332 345555555555
Q ss_pred CCEEEEEeCCCcEEEEECCCC---------ceEEEEccCCCCeEEEEEcC------------------------------
Q 005123 282 KSLLVSGGKDSLVKLWDAKSG---------RELCSFHGHKNMVLCVKWNQ------------------------------ 322 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~---------~~~~~~~~h~~~I~si~fsp------------------------------ 322 (713)
...|+..+.+|.+..|+...- .....+. ....|.++....
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 667888888899888875421 1111122 234455544433
Q ss_pred -----CCCEEEEEECCCeEEEEECCCCe-------eEEEee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 323 -----NGNWVLTASKDQIIKLYDIRAMK-------ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 323 -----dg~~Latgs~Dg~I~IwDl~t~~-------~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
++.+|++.+..|..+...+.... -+..++ ...+.+..+.+.. +...|+..+..|.+.-..+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~-~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG-STDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEETTCCEEEEEG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeC-CCceEEEEcCCCeEEEeeH
Confidence 44689999999999988875322 122222 2233455554443 3445555666666655554
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.058 Score=52.94 Aligned_cols=178 Identities=11% Similarity=0.058 Sum_probs=101.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCe------eEEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE------E
Q 005123 240 DLKFCSCSDDTTVKVWDFARCQ------EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL------C 306 (713)
Q Consensus 240 g~~Las~s~Dg~I~iwDl~~~~------~~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~------~ 306 (713)
+..|++..+| +|++=...++. ....+-. .-..+++++|+|++.+.++ .+|.|+-.+..+.... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4456666666 66554443332 1222221 1247889999999886666 6788777776552211 1
Q ss_pred EEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE------EEe-ecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 307 SFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL------ESF-RGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 307 ~~~--~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l------~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
.+- +.+ ...++.|.++|.+.++ .||.|+-++-.+...- ..+ ..--..+..|.|.| ++.+.++. |+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg 154 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQ 154 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TT
T ss_pred Eecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CC
Confidence 111 111 1478899999987777 5698888775331110 111 11124679999999 77777666 77
Q ss_pred cEEEEEcCCCC------ceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCC
Q 005123 378 SIFHWLVGHET------PQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRP 428 (713)
Q Consensus 378 ~I~Iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~ 428 (713)
.++-+.--... ....+-...-.....+.|.+++.+.+..++ +||....+
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~~g--~~Y~~~~p 209 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGG--KFYEDYPP 209 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEETT--EEEEESCC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEeCC--eEEecCCc
Confidence 75443322111 011111122234555779999988877766 66665443
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.22 Score=57.92 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=118.0
Q ss_pred EccCCCEEEEE-e----CCCcEEEEEcCCCceeee-ec-cCCC------CeeEEEEecCCCEEEEEEC-----------C
Q 005123 194 WSHNDNWMVSG-D----DGGAIKYWQNNMNNVKAN-KS-AHKE------SVRDLSFCRTDLKFCSCSD-----------D 249 (713)
Q Consensus 194 ~spdg~~L~sg-s----~DG~I~vwdl~~~~~~~~-~~-~~~~------~V~~l~fs~dg~~Las~s~-----------D 249 (713)
+++++++++.+ + +...|+++|+.+++.+.. +. ..+. ....++|. |++.++.+.. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 78888877754 2 224699999999987642 11 0001 12445887 4444444321 2
Q ss_pred CeEEEEEcCCCe--eEEEEccCCCc-eEEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceEEEEccCCCCeE
Q 005123 250 TTVKVWDFARCQ--EERSLTGHGWD-VKSVDWHPTKS-----LLVSGGKD---SLVKLWDAKS--GRELCSFHGHKNMVL 316 (713)
Q Consensus 250 g~I~iwDl~~~~--~~~~l~~h~~~-V~sl~~spdg~-----~L~sgs~D---g~I~IwDl~t--~~~~~~~~~h~~~I~ 316 (713)
.+|+.|.+-+.. -...+.+.... ..+...+.+++ .+++.+.+ ..+.+.|... ++ +..+..... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~ 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--A 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--C
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--c
Confidence 468999886542 23344433333 23455566665 24443322 4466777653 33 233322222 1
Q ss_pred EEEEcCCCCEEEEE----------ECCCeEEEEECCCCe-------eEEE-e-ecCCCCeEEEEEeCCCCCEEEEEECCC
Q 005123 317 CVKWNQNGNWVLTA----------SKDQIIKLYDIRAMK-------ELES-F-RGHRKDVTALAWHPFHEEYFVSGSLDG 377 (713)
Q Consensus 317 si~fspdg~~Latg----------s~Dg~I~IwDl~t~~-------~l~~-~-~~h~~~V~sl~fsp~~~~~lasgs~DG 377 (713)
.+..+.++.+++.. ...+.|.+.|+.+.. .... + ......+..+.|.. +.++++...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~ 370 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK--DRVFLATYDNV 370 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS--SCEEEEEEETT
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC--CEEEEEEEECC
Confidence 12334455555532 246779999987631 2222 2 22345677888875 47888888887
Q ss_pred c--EEEEEcCCCC-ceEE-EecccCCCeEEEEEcCCC-cEEE--E---eCCcEEEEecC
Q 005123 378 S--IFHWLVGHET-PQVE-IHNVHDNTVWDLAWHPIG-YLLC--S---NDHTTKFWCRN 426 (713)
Q Consensus 378 ~--I~Iwd~~~~~-~~~~-~~~~h~~~V~~l~~spdg-~~la--S---~Dg~v~iWd~~ 426 (713)
. |.++|+.++. .... +.....+.|..+.++.++ .+++ + .-..+..+++.
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5 5666654442 1222 211113456666666665 3333 2 23455555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.055 Score=66.32 Aligned_cols=203 Identities=9% Similarity=0.103 Sum_probs=125.3
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccC--
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH-- 227 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~-- 227 (713)
-.+|..+.||.=. ..++.|||+++...++.+.- ...|.-=.|..+ +.|+..+ +..|..|+++.. ..++.+..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3556666555443 67899999998887777665 345666777744 4444444 467999999753 222233222
Q ss_pred --CCCeeEEEEecCCCEEEEEE-------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC---CCCEEEEEeC---CC
Q 005123 228 --KESVRDLSFCRTDLKFCSCS-------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP---TKSLLVSGGK---DS 292 (713)
Q Consensus 228 --~~~V~~l~fs~dg~~Las~s-------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp---dg~~L~sgs~---Dg 292 (713)
...|.....+++.++++..+ -.|.+.+|.++.+ ....+.+|......+.+.. ...+++.+.. .+
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 45677777888888876543 3578888987653 3344556655554444432 1223333322 26
Q ss_pred cEEEEECCCC---ceE------EEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 293 LVKLWDAKSG---REL------CSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 293 ~I~IwDl~t~---~~~------~~~~---~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
++.|.++... ... ..+- .....-.++..|+.-..++..+.-|.|.+||+.|+.++..-+.....|.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 8999988542 111 0110 1133345677788777888999999999999999998865553333333
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.65 Score=47.27 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=116.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEE---cCCCceeeeeccCCCCeeEEEEec--CCCEEEEEECCCeEEEEEcCCCe
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ 261 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwd---l~~~~~~~~~~~~~~~V~~l~fs~--dg~~Las~s~Dg~I~iwDl~~~~ 261 (713)
+.+..+......++|+.-+.+|.++... +........+ ...+.|..+.. . ++.+++..+.+|.|+...+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4455555444556666667777766433 3222111112 23566766654 4 56789999999999999875431
Q ss_pred ------eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEccCCCCeEEEEEcCCCCE
Q 005123 262 ------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 262 ------~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t---------~~~~~~~~~h~~~I~si~fspdg~~ 326 (713)
....++ ..+.+..+....+...|+..+.+|.+..++... |.....+. ....|..+....++.+
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 222233 345666666666667888899999988887532 11112232 2355666655566778
Q ss_pred EEEEECCCeEEEEECCC-------CeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE--EEcC
Q 005123 327 VLTASKDQIIKLYDIRA-------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH--WLVG 385 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t-------~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I--wd~~ 385 (713)
|++.+..|.++..++.. ++-+..+ ...+.+..+.... ++..++..+.+|.+.. ++++
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 99999999999988643 2223333 2334555554443 4556777788888877 7663
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.38 Score=49.04 Aligned_cols=195 Identities=10% Similarity=0.031 Sum_probs=118.3
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEe---CCCCceEEEEeccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd---~~t~~~~~~l~~h~~~V~sl~~sp-dg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
.+.|.++......++|+..+.+|.++--. +....... +......|..+.... ++.+++..+.+|.|+...+..-.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34566666666666788888888877543 22211111 222355666664422 56789999999999999865431
Q ss_pred ------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCceEEEEEcCCCCE
Q 005123 220 ------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 220 ------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
....++ ..+.+..+....+...|+..+.+|.+..++... +.....+. ....|.++....++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 111222 345666666666777899999999998887632 22222233 2355666665556678
Q ss_pred EEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE--EECC
Q 005123 285 LVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL--YDIR 342 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~I--wDl~ 342 (713)
|+..+..|.++..++.. ++-+..+ ...+.+..+....+...|+..+.+|.+.. +++.
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 88999999999887643 2223333 23344554444334456777777787777 7654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.098 Score=60.80 Aligned_cols=192 Identities=8% Similarity=0.023 Sum_probs=105.1
Q ss_pred cCCCEEEEEECC----CcEEEEeCCCCceEEEE-e------cc-CCCEEEEEEccCCCEEEEEeCC------CcEEEEEc
Q 005123 154 PTGRRLITGSQS----GEFTLWNGQSFNFEMIL-Q------AH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (713)
Q Consensus 154 pdg~~Latgs~d----g~V~Iwd~~t~~~~~~l-~------~h-~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl 215 (713)
-++..++.|+.+ ..+.+||..+.+....- . .. ...-.++.+..++++++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777787753 46889998877655443 1 11 1122233332266777777654 35788888
Q ss_pred CCCceeeeeccCCCCe-eEEEEecCCCEEEEEECCC--eEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCC-CCEEE
Q 005123 216 NMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEERSLT-----GHGWDVKSVDWHPT-KSLLV 286 (713)
Q Consensus 216 ~~~~~~~~~~~~~~~V-~~l~fs~dg~~Las~s~Dg--~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spd-g~~L~ 286 (713)
.+.+-...-....... .+++...+++.++.|+.++ .+.+||..+.+-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8764332211111111 2222323777788777654 69999998765332211 11222334555554 66777
Q ss_pred EEeC--C-----CcEEEEECCCCce-----EEEEcc----CCCCeEEEEEcCCCCEEEEEEC--------CCeEEEEECC
Q 005123 287 SGGK--D-----SLVKLWDAKSGRE-----LCSFHG----HKNMVLCVKWNQNGNWVLTASK--------DQIIKLYDIR 342 (713)
Q Consensus 287 sgs~--D-----g~I~IwDl~t~~~-----~~~~~~----h~~~I~si~fspdg~~Latgs~--------Dg~I~IwDl~ 342 (713)
.|+. + ..|.+||+.+.+. -..+.. ......++ ...++++++.|+. ...|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4588999987761 112211 11122223 3333677777774 3469999998
Q ss_pred CCee
Q 005123 343 AMKE 346 (713)
Q Consensus 343 t~~~ 346 (713)
+.+-
T Consensus 635 t~~W 638 (695)
T 2zwa_A 635 SETL 638 (695)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7654
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=1.1 Score=46.36 Aligned_cols=186 Identities=11% Similarity=0.065 Sum_probs=115.6
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcee-------eee-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC-------
Q 005123 196 HNDNWMVSGDDGGAIKYWQNNMNNVK-------ANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC------- 260 (713)
Q Consensus 196 pdg~~L~sgs~DG~I~vwdl~~~~~~-------~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~------- 260 (713)
++..++++.+.+|.|+-..+..-+.. ..+ ....+.+..+..+.....++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45678889999999998876433211 111 123355666666767778888899998887765321
Q ss_pred --ee---EEEEccCCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEcCCCC
Q 005123 261 --QE---ERSLTGHGWDVKSVDWHP---TKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 261 --~~---~~~l~~h~~~V~sl~~sp---dg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fspdg~ 325 (713)
.. ...+. ....|.++.... +..+|+..+.+|.++...+.. |.....+.. ...+..+....++.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 11 11122 223455554332 466788899999999887743 222223333 45566666655567
Q ss_pred EEEEEECCCeEEEEECCCC---------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 326 WVLTASKDQIIKLYDIRAM---------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~---------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.|+..+.+|.+..+++..- .....+. ....|.++.... ++..|++.+..|.++..++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHH
Confidence 8889999999999987531 1222233 234566666554 45678889999999999884
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=96.40 E-value=1.4 Score=47.33 Aligned_cols=273 Identities=11% Similarity=0.081 Sum_probs=148.8
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCC-----------ceEEEEec-cCCCEEEEEEccCCCEEEEEeCC-CcEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF-----------NFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG-GAIKY 212 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~-----------~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D-G~I~v 212 (713)
.|..|+.. ..+.++-..||.|+.|-.... .....+.. ....|..|+.. ..+.+.-..| +.|..
T Consensus 17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEE
T ss_pred ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEE
Confidence 45555443 445666677888888853321 01111221 23467777664 3344434444 58999
Q ss_pred EEcCCC---------ce-e-eeec-cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC----------e-eEEEEcc-
Q 005123 213 WQNNMN---------NV-K-ANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----------Q-EERSLTG- 268 (713)
Q Consensus 213 wdl~~~---------~~-~-~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~----------~-~~~~l~~- 268 (713)
|-.... .. . ..+. .....|..|+. -....++...||.|+.|-.... . ....+..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 954321 00 0 1111 12235666655 3455666678999999975431 1 1111221
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c---------e-EEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R---------E-LCSFHG-HKNMVLCVKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~---------~-~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I 336 (713)
....|..|+.. ..+.++...||.|+.|-.... + . ...+.. ....|..|+. ...+.++.+.||.|
T Consensus 171 ~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 171 EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGAL 246 (406)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCCE
Confidence 12357777665 455666678999999964321 1 1 111111 1234655554 34566667789999
Q ss_pred EEEECCCCe-----------eEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc-----------eEEE
Q 005123 337 KLYDIRAMK-----------ELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----------QVEI 393 (713)
Q Consensus 337 ~IwDl~t~~-----------~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~-----------~~~~ 393 (713)
+.|-....- ....+.. ....|..|+. +....++...||.|+.|=.+.... ...+
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG---GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe---cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 999754211 1111211 2234666665 556667778899999997543211 1112
Q ss_pred ecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 394 HNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
.......|..|+.-....++.+.|+.|..|=.+..+..
T Consensus 324 ~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqL 361 (406)
T 4d9s_A 324 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361 (406)
T ss_dssp CCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred eccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCcc
Confidence 11223467777776666666779999999987665543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.59 Score=51.36 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=61.6
Q ss_pred CceEEEEEccCCC-EEEEEECCCcEEEEeCCCCc---eEEEEe---------ccCCCEEEEEEccC---CCEEEEE-eC-
Q 005123 145 CSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN---FEMILQ---------AHDHAIRSMVWSHN---DNWMVSG-DD- 206 (713)
Q Consensus 145 ~~V~~v~~spdg~-~Latgs~dg~V~Iwd~~t~~---~~~~l~---------~h~~~V~sl~~spd---g~~L~sg-s~- 206 (713)
..-+.|+|.+|++ +|+++...|.|++++..... .+..+. ........|+|+|+ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568899999996 57777889999999754321 122221 11456889999986 3344332 21
Q ss_pred -C----------CcEEEEEcCCC----------ceeeeec--cCCCCeeEEEEecCCCEEEEEECC
Q 005123 207 -G----------GAIKYWQNNMN----------NVKANKS--AHKESVRDLSFCRTDLKFCSCSDD 249 (713)
Q Consensus 207 -D----------G~I~vwdl~~~----------~~~~~~~--~~~~~V~~l~fs~dg~~Las~s~D 249 (713)
+ ..|.-|.+..+ +++..+. ........|+|.+|+.++++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555421 1222221 222346789999999877776553
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.36 E-value=1.2 Score=46.36 Aligned_cols=227 Identities=11% Similarity=0.043 Sum_probs=134.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCce-------EEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE---cCCC------
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNF-------EMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMN------ 218 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~-------~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd---l~~~------ 218 (713)
...+++.+.+|.|+--.+.+.+. ...+. ...+.+..+........|+.-+..|.++... +...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34677888888888765332110 11111 1234565555555667777777778776554 3221
Q ss_pred ceeeee--ccCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCCC-------eeEEEEccCCCceEEEEEcCCCCEEE
Q 005123 219 NVKANK--SAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 219 ~~~~~~--~~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~~-------~~~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
..+..+ ....+.|.++.... ++.+++.++.+|.|+...+... .....++. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 111111 12345666665444 4789999999999999887442 22223333 44566665555667788
Q ss_pred EEeCCCcEEEEECC--CCc---------eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eeEE
Q 005123 287 SGGKDSLVKLWDAK--SGR---------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-------KELE 348 (713)
Q Consensus 287 sgs~Dg~I~IwDl~--t~~---------~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~-------~~l~ 348 (713)
..+.+|.+..+.+. .-. ....+. ....|.++....++.+|++.+..|.++.-.+... +-+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88899999888776 311 111222 3455777766666778999999999998876432 2222
Q ss_pred Eee--cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 349 SFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 349 ~~~--~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.++ .-.+.+..+.... +...++..+.+|.+..+++.
T Consensus 241 ~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 232 2134455555544 45567777788888777763
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=1.4 Score=46.89 Aligned_cols=224 Identities=13% Similarity=0.160 Sum_probs=125.6
Q ss_pred CCEEEEEECCCcEEEEeCCCC--------c---eEEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc----
Q 005123 156 GRRLITGSQSGEFTLWNGQSF--------N---FEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---- 219 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~--------~---~~~~l~~-h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~---- 219 (713)
....++-..||.|+.|-.... + ....+.. ....+..++++....+.+.-..||.|..|-.....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445666677888888853221 1 1111221 23345666777667777778889999999543211
Q ss_pred -------eeeeecc-CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC----------e-eEEEEcc-CCCceEEEEEc
Q 005123 220 -------VKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----------Q-EERSLTG-HGWDVKSVDWH 279 (713)
Q Consensus 220 -------~~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~----------~-~~~~l~~-h~~~V~sl~~s 279 (713)
....+.. ....|..|+. -....++...||.|+.|-.... . ....+.. ....|..|+..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 1111111 1224555554 4455666778999999975321 1 1111111 23457777765
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005123 280 PTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (713)
Q Consensus 280 pdg~~L~sgs~Dg~I~IwDl~t~-~----------~~~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~--- 344 (713)
......++...|+.|+.|-.... + ....+.. ....|..|+.. ..+.++-..||.|+.|-....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Confidence 43456777788999999964321 1 1112221 12246666553 445666678999999975421
Q ss_pred --------eeEEEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 345 --------~~l~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.....+.. ....|..|+. +....++...||.|+.|=.+.
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECCCCCEEEeeCCC
Confidence 01111221 2245777765 456667778999999997654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.18 Score=49.48 Aligned_cols=141 Identities=8% Similarity=-0.040 Sum_probs=80.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC--------eeEEEEecCCCEEEEEECCCeEEEEEcC
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES--------VRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~--------V~~l~fs~dg~~Las~s~Dg~I~iwDl~ 258 (713)
..+++++|+|++.+.++ .+|.+.-.+..+.....-+ ..... -.++.|.+++.+.++ .||.|+-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~-~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM-GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH-HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc-ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999887766 5677666555442211111 11122 478899999988777 56888888753
Q ss_pred CCee-------EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEc-cCCCCeEEEEEcCCC
Q 005123 259 RCQE-------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------ELCSFH-GHKNMVLCVKWNQNG 324 (713)
Q Consensus 259 ~~~~-------~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~------~~~~~~-~h~~~I~si~fspdg 324 (713)
+... ...-..-=..+..|.+.|+|.+.++. |+.++-+..-+.. ....+. ..-.....+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2111 11111122468999999999877766 7775433222111 011111 222234456688888
Q ss_pred CEEEEEECCCeE
Q 005123 325 NWVLTASKDQII 336 (713)
Q Consensus 325 ~~Latgs~Dg~I 336 (713)
.++++. ++.|
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 766655 6633
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.29 E-value=1.3 Score=45.81 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=129.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEE---------EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C-----
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEM---------ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M----- 217 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~---------~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~----- 217 (713)
+..++++.+.+|.|+--.+.+.+... .+. ..+.+..+......+.|+..+..|.+.-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678899999999887766543221 122 23445455555566777777788887666532 2
Q ss_pred -Cceee-ee-ccCCCCeeEEEEe---cCCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEcCCCCE
Q 005123 218 -NNVKA-NK-SAHKESVRDLSFC---RTDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 218 -~~~~~-~~-~~~~~~V~~l~fs---~dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~spdg~~ 284 (713)
+..+. .+ -...+.|.++... .++.+++..+.+|.++...+.. +.....+... +.+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 11111 11 1234456666443 3566799999999999997742 2222223333 55656555555567
Q ss_pred EEEEeCCCcEEEEECCCC---------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------eEE
Q 005123 285 LVSGGKDSLVKLWDAKSG---------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELE 348 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~---------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-------~l~ 348 (713)
|+..+.+|.+..++...- .....+. ....|.++....++..|++.+..|.++-.++.... -+.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 888888999888876431 1111222 34456666655556778999999999988874211 122
Q ss_pred E--eecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 349 S--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 349 ~--~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
. +..-.+.+..+.... +...|+..+.+|.+.-+++.
T Consensus 239 ~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGG
T ss_pred eeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEecc
Confidence 2 222234555554444 34556667777777766664
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.88 Score=47.39 Aligned_cols=228 Identities=10% Similarity=0.081 Sum_probs=129.6
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C------Cce
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M------NNV 220 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~------~~~ 220 (713)
++..++++.+.+|.|+--.+.+.+ ....+. ..+.+..+......+.|+..+..|.+.-+... . +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678899999999877543211 111122 23445555555566777777888887666532 1 111
Q ss_pred eee-e-ccCCCCeeEEEEecC---CCEEEEEECCCeEEEEEcCC--------CeeEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 221 KAN-K-SAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFAR--------CQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 221 ~~~-~-~~~~~~V~~l~fs~d---g~~Las~s~Dg~I~iwDl~~--------~~~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+.. + -...+.|.++....+ +.+|+.++.+|.++...+.. +.....+.. .+.+..+........|+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEE
Confidence 111 1 112345665544332 56899999999999998742 222222332 255666655555667888
Q ss_pred EeCCCcEEEEECCCC----c---eEE--EEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-------eeEEEe
Q 005123 288 GGKDSLVKLWDAKSG----R---ELC--SFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-------KELESF 350 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~----~---~~~--~~~~h~~~I~si~fspdg~-~Latgs~Dg~I~IwDl~t~-------~~l~~~ 350 (713)
.+.+|.+..++...- + -++ .+. ....|.++....++. .|++.+..|..+..++... +-+..+
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 889999888876431 1 111 222 234566665444445 7888899999888877531 212222
Q ss_pred e---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 351 R---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 351 ~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
+ .....+..+.... ++..++..+.+|.+..++++
T Consensus 240 ~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGG
T ss_pred eecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhh
Confidence 2 2222454333332 34556677777777666653
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.58 Score=54.30 Aligned_cols=234 Identities=10% Similarity=0.079 Sum_probs=124.7
Q ss_pred eEEEE-EccCCCEEEEEEC-----CCcEEEEeCCCCceEEE-Ee-ccCC------CEEEEEEccCCCEEEEEe-------
Q 005123 147 INRVL-WTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMI-LQ-AHDH------AIRSMVWSHNDNWMVSGD------- 205 (713)
Q Consensus 147 V~~v~-~spdg~~Latgs~-----dg~V~Iwd~~t~~~~~~-l~-~h~~------~V~sl~~spdg~~L~sgs------- 205 (713)
...+. +++|+++++.+-+ -..|+++|+.+++.+.. +. ..+. ....++|. |++.++.+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 44455 8899988876532 24689999999876531 11 0000 11345887 444444432
Q ss_pred ----CCCcEEEEEcCCCc--eeeeeccCCCCe-eEEEEecCCCE-----EEEEEC---CCeEEEEEcCC--CeeEEEEcc
Q 005123 206 ----DGGAIKYWQNNMNN--VKANKSAHKESV-RDLSFCRTDLK-----FCSCSD---DTTVKVWDFAR--CQEERSLTG 268 (713)
Q Consensus 206 ----~DG~I~vwdl~~~~--~~~~~~~~~~~V-~~l~fs~dg~~-----Las~s~---Dg~I~iwDl~~--~~~~~~l~~ 268 (713)
....|+.|.+-+.. -...+......+ .+...+.++.+ +++.+. ...+.+.|... ++ ...+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec
Confidence 12468888876542 222233322332 34445566652 444332 24566667653 33 222322
Q ss_pred CCCceEEEEEcCCCCEEEEE----------eCCCcEEEEECCCC-------ceEEE-E-ccCCCCeEEEEEcCCCCEEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSG----------GKDSLVKLWDAKSG-------RELCS-F-HGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sg----------s~Dg~I~IwDl~t~-------~~~~~-~-~~h~~~I~si~fspdg~~Lat 329 (713)
... . .+..+.++.+++.. ...+.|.+.|+.+. +.... + ......+..+.|..+ .++++
T Consensus 289 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSD-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTT-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCc-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 221 1 12233345444432 24567999998763 12222 3 223456778888865 56667
Q ss_pred EECCCe--EEEEECCCCe-eEEE-eecC-CCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcC
Q 005123 330 ASKDQI--IKLYDIRAMK-ELES-FRGH-RKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~--I~IwDl~t~~-~l~~-~~~h-~~~V~sl~fsp~~~~~lasgs~D---G~I~Iwd~~ 385 (713)
...++. |+++|+.+++ .+.. +... ...|..+.++.+++.++++.+.. +.+..+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 777764 6777776664 2333 3222 24566666666556677766553 467777775
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.81 Score=50.81 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=129.9
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeccC-------------------------CCC--eeEEEEe---cCCCEEEEEEC-C
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKSAH-------------------------KES--VRDLSFC---RTDLKFCSCSD-D 249 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~~~-------------------------~~~--V~~l~fs---~dg~~Las~s~-D 249 (713)
|.+|+..|.|+|+-+-+++.+..+... .+. -..+++. -||++|++-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 457888899999988887766654210 011 1234443 26777877764 6
Q ss_pred CeEEEEEcCCCeeEEEEcc-CCCceEEEEEc--CCCCEEEEEeC-------CCcE---------EE---EECCCCceEEE
Q 005123 250 TTVKVWDFARCQEERSLTG-HGWDVKSVDWH--PTKSLLVSGGK-------DSLV---------KL---WDAKSGRELCS 307 (713)
Q Consensus 250 g~I~iwDl~~~~~~~~l~~-h~~~V~sl~~s--pdg~~L~sgs~-------Dg~I---------~I---wDl~t~~~~~~ 307 (713)
..|-..+++..++...+.. ....+..+.|- |+-.+++++++ ||.. .+ .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6788889988877655542 44678888886 57778888875 2221 11 12222222221
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCC---------------eEEEEECCC-------Ce-------eEEEeecC-----
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQ---------------IIKLYDIRA-------MK-------ELESFRGH----- 353 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg---------------~I~IwDl~t-------~~-------~l~~~~~h----- 353 (713)
+.- ......+....+++|.++.+.+. .|.++|++. ++ -+..+.+.
T Consensus 233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 110 12233345566778877766432 355555421 10 11122211
Q ss_pred ----------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC-----------ceEEEecccCCCeEEEEEcCCCcE
Q 005123 354 ----------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 354 ----------~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~-----------~~~~~~~~h~~~V~~l~~spdg~~ 412 (713)
......+.++|++..+++++-.+.+|.|+|+++-. ..+.....-.-.-...+|+++|..
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence 12345678899444444555568899999996421 111111112345678899999966
Q ss_pred EEE--eCCcEEEEecCC
Q 005123 413 LCS--NDHTTKFWCRNR 427 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~ 427 (713)
..+ .|..|..|+++.
T Consensus 392 YTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EeeeeecceEEEEeccH
Confidence 666 899999999865
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=95.57 E-value=3.1 Score=44.49 Aligned_cols=235 Identities=10% Similarity=0.101 Sum_probs=128.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-----------eeeeec-cCCCCeeEEEEecCCCEEEEEECC-CeE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----------VKANKS-AHKESVRDLSFCRTDLKFCSCSDD-TTV 252 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~-----------~~~~~~-~~~~~V~~l~fs~dg~~Las~s~D-g~I 252 (713)
...|..|+. -..+.++-..||.|..|=..... ....+. .....|..++.. ....++...| +.|
T Consensus 15 ~~~v~~ia~--G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v 90 (406)
T 4d9s_A 15 PRKVLIISA--GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEV 90 (406)
T ss_dssp CCCEEEEEE--CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEE
T ss_pred ccceEEEec--CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEE
Confidence 345555554 34455556678888888543210 111111 122356666653 3344444455 599
Q ss_pred EEEEcCCC---------ee--EEEEcc-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEc
Q 005123 253 KVWDFARC---------QE--ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFH 309 (713)
Q Consensus 253 ~iwDl~~~---------~~--~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~----------~~~~~~ 309 (713)
+.|-.... .. ...+.. ....|..|+.. ..+.++...||.|+.|-.... + ....+.
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99964321 01 111111 22367777765 455666678999999965431 1 111122
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----------ee-EEEeec-CCCCeEEEEEeCCCCCEEEEEECC
Q 005123 310 G-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------KE-LESFRG-HRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 310 ~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~----------~~-l~~~~~-h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
. ....|..|+. ...+.++...||.|+.|-.... .. ...+.. ....|..|+. +....++...|
T Consensus 169 ~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~ 243 (406)
T 4d9s_A 169 AFEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYS 243 (406)
T ss_dssp GGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETT
T ss_pred ccCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCC
Confidence 1 1224666655 4456777788999999964321 11 111111 2245667665 55667777899
Q ss_pred CcEEEEEcCCCCce-----------EEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCCc
Q 005123 377 GSIFHWLVGHETPQ-----------VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431 (713)
Q Consensus 377 G~I~Iwd~~~~~~~-----------~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~~ 431 (713)
|.|+.|-.+....+ ..+.......|..|+--.+..++.+.|+.|..|=.+..+..
T Consensus 244 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqL 309 (406)
T 4d9s_A 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV 309 (406)
T ss_dssp CCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCC
Confidence 99999975432111 11111123457777776666666679999999988776553
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=95.43 E-value=3.5 Score=44.13 Aligned_cols=232 Identities=11% Similarity=0.001 Sum_probs=130.0
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce------------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~------------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~ 253 (713)
...|..|+.. ..+.+.-..||.|..|-.+.... .-........|..|+. -....++-+.||.|+
T Consensus 58 ~~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~--G~~hs~alt~~G~v~ 133 (413)
T 1a12_A 58 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVF 133 (413)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEec--CCCeEEEEcCCCcEE
Confidence 3566666653 45566667889999996543110 0000112335665555 344566667899999
Q ss_pred EEEc--CCC-e----------e-EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ce--------------
Q 005123 254 VWDF--ARC-Q----------E-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RE-------------- 304 (713)
Q Consensus 254 iwDl--~~~-~----------~-~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~~-------------- 304 (713)
.|-. ... + . ...+ .....|..|+.- ....++-+.||.|+.|-.... ++
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 9974 211 1 0 1111 233467777765 445666678999999965431 10
Q ss_pred -------EEEEcc------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------eEEEeecC---CCCe
Q 005123 305 -------LCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-----------ELESFRGH---RKDV 357 (713)
Q Consensus 305 -------~~~~~~------h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-----------~l~~~~~h---~~~V 357 (713)
...+.. ....|..|+.. ..+.++...||.|+.|-....- .-..+... ...|
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v 288 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSW 288 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCE
T ss_pred cccccccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceE
Confidence 001111 12346666553 3455666789999999764311 11111111 1347
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcCCC---------Cce--EEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQ--VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 358 ~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~---------~~~--~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
..|+. +....++...||.|+.|-.... ... -..+. ....|..|+.-.+..++.+.|+.|..|=.+
T Consensus 289 ~~ia~---G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 289 VGFSG---GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp EEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEec---ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 77665 4566677778999999965321 111 11111 123677777766666666799999999877
Q ss_pred CCCC
Q 005123 427 RPGD 430 (713)
Q Consensus 427 ~~~~ 430 (713)
..+.
T Consensus 365 ~~gq 368 (413)
T 1a12_A 365 TNYQ 368 (413)
T ss_dssp TTST
T ss_pred CCCC
Confidence 6554
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.36 E-value=2.4 Score=43.74 Aligned_cols=196 Identities=10% Similarity=0.009 Sum_probs=114.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC---C------CceEE---EEeccCCCEEEEEEc---cCCCEEEEEeCCCc
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ---S------FNFEM---ILQAHDHAIRSMVWS---HNDNWMVSGDDGGA 209 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~---t------~~~~~---~l~~h~~~V~sl~~s---pdg~~L~sgs~DG~ 209 (713)
+.+..+......+.|+..+..|.++-+... . +..+. .+. ....|.++... .++.+|+..+.+|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 445555556666778888888887766532 2 11110 122 23456555432 35568999999999
Q ss_pred EEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCCce
Q 005123 210 IKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDV 273 (713)
Q Consensus 210 I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~~V 273 (713)
++...+..- .....+... +.+..+....+...|+..+.+|.+..++... +.....+. ....|
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~V 198 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKV 198 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEE
Confidence 999876421 111222333 5666666666667788889999988887632 11112222 34567
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005123 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (713)
Q Consensus 274 ~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~---------~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t 343 (713)
.++....++..|++.+..|.++-.++.... ....+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 199 v~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 199 VSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 777655556678888999999888763211 1112222234555544434445566667777766666543
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.30 E-value=3.9 Score=43.88 Aligned_cols=229 Identities=7% Similarity=0.024 Sum_probs=123.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCC------------ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
.|..|+. -+.+.++-..||.|+.|-.... ...-........|..|+.. ..+.++-..||.|..|
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEE
Confidence 3555544 3556777788999999954321 0111111123456666653 3555666788999999
Q ss_pred Ec--CC-Cce---------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCC---------------------
Q 005123 214 QN--NM-NNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC--------------------- 260 (713)
Q Consensus 214 dl--~~-~~~---------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~--------------------- 260 (713)
-. +. +.+ ..........|..|+. -....++-..||.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 75 22 111 1111122345666655 3445666678999999964321
Q ss_pred --eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------ceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 261 --QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-----------RELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 261 --~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-----------~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
............|..|+... ...++.-..|+.|+.|-.... ............|..|+. ...+.
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht 306 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHT 306 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEE
T ss_pred ccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeE
Confidence 01111111223466666542 223333357899999954321 111111111345666654 34566
Q ss_pred EEEECCCeEEEEECCCC------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 328 LTASKDQIIKLYDIRAM------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t~------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
++-..||.|+.|-.... .....+......|..|+.. ....++...||.|+.|=.+.
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G---~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG---EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE---TTEEEEEETTSCEEEEECCT
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC---CCeEEEEcCCCCEEEECCCC
Confidence 67778999999965321 1122223233367777764 45555668999999997644
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=4.5 Score=44.25 Aligned_cols=191 Identities=12% Similarity=0.074 Sum_probs=107.6
Q ss_pred CCeeEEEEecCCCEEEEEECCCeEEEEEcC---CCe-----------e-EEEEcc-CCCceEEEEEcCCCCEEEEEeCCC
Q 005123 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQ-----------E-ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~---~~~-----------~-~~~l~~-h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
..|..|+. .....++...||.|+.|-.. .++ . -..+.. ....|..|+.. ....++...+|
T Consensus 148 ~~i~~va~--G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAA--TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEE--CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEc--cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 45555555 34455666789999999741 111 0 111111 12247777765 45666667899
Q ss_pred cEEEEECCCC-ce--------------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------e
Q 005123 293 LVKLWDAKSG-RE--------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------K 345 (713)
Q Consensus 293 ~I~IwDl~t~-~~--------------~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~------------~ 345 (713)
.|+.|-.... +. ...+ ....|..|+. ...+.++.+.+|.|+.|-.... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 9999965431 10 0111 1134666654 3456667778999999965321 1
Q ss_pred eE---EEeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce---------------------E-E-EecccC
Q 005123 346 EL---ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---------------------V-E-IHNVHD 398 (713)
Q Consensus 346 ~l---~~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~---------------------~-~-~~~~h~ 398 (713)
.+ ..+.. ....|..|+. +....++...||.|+.|=......+ . . ......
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~---G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~ 376 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAA---GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV 376 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEE---CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS
T ss_pred eeeccccccccCCccEEEEEe---CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC
Confidence 11 11111 1245777765 4556666688999999975432111 0 0 000111
Q ss_pred CCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 399 NTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 399 ~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
..|..|+.-.+..++.+.|+.|..|=.+..+.
T Consensus 377 ~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 377 PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTCT
T ss_pred CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCC
Confidence 25777777666666667999999998776554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.48 Score=54.89 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=102.1
Q ss_pred cCCCEEEEEeCC----CcEEEEEcCCCceeeee-c-----cCC-CCeeEEEEec-CCCEEEEEECC------CeEEEEEc
Q 005123 196 HNDNWMVSGDDG----GAIKYWQNNMNNVKANK-S-----AHK-ESVRDLSFCR-TDLKFCSCSDD------TTVKVWDF 257 (713)
Q Consensus 196 pdg~~L~sgs~D----G~I~vwdl~~~~~~~~~-~-----~~~-~~V~~l~fs~-dg~~Las~s~D------g~I~iwDl 257 (713)
-++.+++.|+.+ ..+.+||..+++-.... . ... ..-.+++... +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356677777643 46788888877543322 1 111 1112333333 66677776643 35888998
Q ss_pred CCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEc-----cCCCCeEEEEEcCC-CCEE
Q 005123 258 ARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQN-GNWV 327 (713)
Q Consensus 258 ~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~Dg--~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspd-g~~L 327 (713)
.+.+-... +....... +++...++++++.|+.++ .+.+||..+.+-...-. .......++.+..+ ++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 87543221 11111222 233323688888887655 69999998765322111 11222333555554 6677
Q ss_pred EEEEC--C-----CeEEEEECCCCee-----EEEee----cCCCCeEEEEEeCCCCCEEEEEEC--------CCcEEEEE
Q 005123 328 LTASK--D-----QIIKLYDIRAMKE-----LESFR----GHRKDVTALAWHPFHEEYFVSGSL--------DGSIFHWL 383 (713)
Q Consensus 328 atgs~--D-----g~I~IwDl~t~~~-----l~~~~----~h~~~V~sl~fsp~~~~~lasgs~--------DG~I~Iwd 383 (713)
+.|+. + ..+.+||+.+.+- ...+. ........+.+. ++.+++.|+. ...|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77765 2 4689999887651 11111 111222333332 2677777774 34588888
Q ss_pred cCCCC
Q 005123 384 VGHET 388 (713)
Q Consensus 384 ~~~~~ 388 (713)
+.+..
T Consensus 633 ~~t~~ 637 (695)
T 2zwa_A 633 PLSET 637 (695)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 86653
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=3.9 Score=42.40 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=112.9
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCC---------CceE---EEEeccCCCEEEEEEccC---CCEEEEEeCCC
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---------FNFE---MILQAHDHAIRSMVWSHN---DNWMVSGDDGG 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---------~~~~---~~l~~h~~~V~sl~~spd---g~~L~sgs~DG 208 (713)
.+.+..+......+.|+..+..|.++-+.... +..+ ..+. ....|.++....+ +.+|+.++.+|
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCC
Confidence 34555566666677888888889877665321 1110 0111 2344555433332 56899999999
Q ss_pred cEEEEEcCCC--------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCC
Q 005123 209 AIKYWQNNMN--------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGW 271 (713)
Q Consensus 209 ~I~vwdl~~~--------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~ 271 (713)
.++...+..- .....+.. .+.+..+....+...|+..+.+|.+..++... +.....+. ...
T Consensus 117 ~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d 194 (323)
T 1wp5_A 117 MVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGD 194 (323)
T ss_dssp EEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTC
T ss_pred eEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCC
Confidence 9999876421 11122222 35666666666667888899999998888642 11122222 234
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-------CceEEEE---ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 272 DVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-------GRELCSF---HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 272 ~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t-------~~~~~~~---~~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
.|.++....++. .|++.+..|..+..++.. ++-+..+ +.....+..+....++..|+..+.+|.+..++
T Consensus 195 ~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~ 274 (323)
T 1wp5_A 195 YIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIK 274 (323)
T ss_dssp CEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEE
Confidence 566665544445 788888889888877643 1112222 22222454333333445566777777776666
Q ss_pred CCC
Q 005123 341 IRA 343 (713)
Q Consensus 341 l~t 343 (713)
+..
T Consensus 275 ~~~ 277 (323)
T 1wp5_A 275 VGD 277 (323)
T ss_dssp GGG
T ss_pred hhh
Confidence 543
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0036 Score=68.77 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=3.1
Q ss_pred cccccccC
Q 005123 530 QQQGYQQN 537 (713)
Q Consensus 530 ~~~~~~~~ 537 (713)
+||+|+|.
T Consensus 380 ~~~~~~~~ 387 (449)
T 3iot_A 380 AFESLKSF 387 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 33334443
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.72 E-value=5.2 Score=42.34 Aligned_cols=197 Identities=9% Similarity=0.030 Sum_probs=111.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCC---------CceEE---EEeccCCCEEEEEEcc---CCCEEEEEeCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---------FNFEM---ILQAHDHAIRSMVWSH---NDNWMVSGDDG 207 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t---------~~~~~---~l~~h~~~V~sl~~sp---dg~~L~sgs~D 207 (713)
..+.|..+......+.|+..+..|.++-+.... +..+. .+. ....|.++.... ++.+|+.++..
T Consensus 44 e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 122 (370)
T 3l6v_A 44 EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRN 122 (370)
T ss_dssp CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 456677777777777888888888887665321 11111 122 234555554432 45689999999
Q ss_pred CcEEEEEcCCC-------ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC---------CeeEEEEccCCC
Q 005123 208 GAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGW 271 (713)
Q Consensus 208 G~I~vwdl~~~-------~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~---------~~~~~~l~~h~~ 271 (713)
|.++...+..- .....+.. .+.+..+....+...|+..+.+|.+..++... +.....+. ...
T Consensus 123 G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d 200 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGE 200 (370)
T ss_dssp SEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTC
T ss_pred CeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCC
Confidence 99999875432 12222322 45566666666667888889999988887632 11112222 234
Q ss_pred ceEEEEEcC-----------------------------------CCCEEEEEeCCCcEEEEECCCCce-------EE--E
Q 005123 272 DVKSVDWHP-----------------------------------TKSLLVSGGKDSLVKLWDAKSGRE-------LC--S 307 (713)
Q Consensus 272 ~V~sl~~sp-----------------------------------dg~~L~sgs~Dg~I~IwDl~t~~~-------~~--~ 307 (713)
.|.++.... ++..|++.+..|..+...+..... +. .
T Consensus 201 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k 280 (370)
T 3l6v_A 201 EVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQ 280 (370)
T ss_dssp CEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSC
T ss_pred EEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEE
Confidence 455544443 345788889999988887643211 11 1
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 308 ~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
+....+.+..+.+..++..|+..+..|.+.-..+.
T Consensus 281 ~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 281 TTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp CCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 22223345444444444555556666665555543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=4.5 Score=42.94 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=94.5
Q ss_pred eEEEEEcCCC--eeEEEEcc------CCCceEEEEEc-C--C----CCEEEEEe-CCCcEEEEECCCCceEEEEcc----
Q 005123 251 TVKVWDFARC--QEERSLTG------HGWDVKSVDWH-P--T----KSLLVSGG-KDSLVKLWDAKSGRELCSFHG---- 310 (713)
Q Consensus 251 ~I~iwDl~~~--~~~~~l~~------h~~~V~sl~~s-p--d----g~~L~sgs-~Dg~I~IwDl~t~~~~~~~~~---- 310 (713)
+|.+||+.+. +.++.+.- ....+..|.++ . + +.++..+. .+..|.|+|+++++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888887 77776643 23457788887 2 2 23444443 356799999999876655421
Q ss_pred C--------------CCCeEEEEEcCC----CCEEEEEECCCeEEEEECC-----CC---eeEEEee--cCCCCeEEEEE
Q 005123 311 H--------------KNMVLCVKWNQN----GNWVLTASKDQIIKLYDIR-----AM---KELESFR--GHRKDVTALAW 362 (713)
Q Consensus 311 h--------------~~~I~si~fspd----g~~Latgs~Dg~I~IwDl~-----t~---~~l~~~~--~h~~~V~sl~f 362 (713)
. ...|..|+++++ +++|+.....+ -++|.+. +. ..+..+- +....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0 236788999987 78888776655 2333332 11 1122221 11133445666
Q ss_pred eCCCCCEEEEEECCCcEEEEEcCC-CC--ceEEEe-c-ccCCCeEEEEEcCCCcEEE
Q 005123 363 HPFHEEYFVSGSLDGSIFHWLVGH-ET--PQVEIH-N-VHDNTVWDLAWHPIGYLLC 414 (713)
Q Consensus 363 sp~~~~~lasgs~DG~I~Iwd~~~-~~--~~~~~~-~-~h~~~V~~l~~spdg~~la 414 (713)
.+.++.++++--....|..|+..+ .. ....++ . ..-..+.++++..++.+.+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 533677888888888999999865 21 112222 1 1123456677666664433
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=8.7 Score=44.95 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCceEEEEEccC-CCEEEEEECCCcEEEEeCCCCceEEEEecc-------CCCEEEEEEccCC-CEEEEEeCCCc----E
Q 005123 144 RCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHND-NWMVSGDDGGA----I 210 (713)
Q Consensus 144 ~~~V~~v~~spd-g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-------~~~V~sl~~spdg-~~L~sgs~DG~----I 210 (713)
...|.+|+++++ ...+++++..+.|+..+-.. +.-..+..+ ...|.+|++.+.. +.++++..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG-~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT-SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT-TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC-CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999986 35677777777777665332 222222221 2469999998743 45555443211 3
Q ss_pred EEEEcC-CCceeeeecc---------CCCCeeEEEEecCC-CEEEEEECCCeEEEEEcC-CCeeEEEEcc------CCCc
Q 005123 211 KYWQNN-MNNVKANKSA---------HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA-RCQEERSLTG------HGWD 272 (713)
Q Consensus 211 ~vwdl~-~~~~~~~~~~---------~~~~V~~l~fs~dg-~~Las~s~Dg~I~iwDl~-~~~~~~~l~~------h~~~ 272 (713)
.||... .++.-..+.. ....+..|++++.. +.++++...+.| |-.. .++.-..+.. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 444333 3332222211 01135667887643 455555534433 3222 2222122221 1245
Q ss_pred eEEEEEcCC-CCEEEEEeCC
Q 005123 273 VKSVDWHPT-KSLLVSGGKD 291 (713)
Q Consensus 273 V~sl~~spd-g~~L~sgs~D 291 (713)
+..|.+++. .+.|+++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999874 4566666654
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=93.88 E-value=8 Score=41.23 Aligned_cols=227 Identities=9% Similarity=0.029 Sum_probs=123.8
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCC------------ce-EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~------------~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~ 211 (713)
..|..|+.. ..+.++-..||.|+.|-.... .. -..+ .....|..|+.. ..+.++-..||.|.
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEE
Confidence 456666654 345666678899999964321 00 1111 123466666653 35566667889999
Q ss_pred EEEc--CCC-ce----------eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE---------------
Q 005123 212 YWQN--NMN-NV----------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--------------- 263 (713)
Q Consensus 212 vwdl--~~~-~~----------~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~--------------- 263 (713)
.|-. +.. .+ .-........|..|+. -....++-+.||.|+.|-....-.+
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 9964 211 10 0011122345655555 3445566678999999975431100
Q ss_pred -------EEEcc------CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eEEEEccCC---CCeE
Q 005123 264 -------RSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHGHK---NMVL 316 (713)
Q Consensus 264 -------~~l~~------h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~-~----------~~~~~~~h~---~~I~ 316 (713)
..+.. ....|..|+.. ..+.++...||.|+.|-.... + ....+.... ..|.
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 00111 22456777665 344555568899999965431 1 111122111 2366
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC---------e---eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 317 CVKWNQNGNWVLTASKDQIIKLYDIRAM---------K---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 317 si~fspdg~~Latgs~Dg~I~IwDl~t~---------~---~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
.|+. ...+.++-..||.|+.|-.... + .-..+.. ...|..|+. +....++...||.|+.|=.
T Consensus 290 ~ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~---G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 290 GFSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC---GASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE---CSSEEEEEETTSCEEEEEC
T ss_pred EEec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE---CcceEEEEeCCCCEEEecC
Confidence 6554 3456666778999999965321 1 1112221 226777765 4566677778999999976
Q ss_pred CC
Q 005123 385 GH 386 (713)
Q Consensus 385 ~~ 386 (713)
..
T Consensus 364 n~ 365 (413)
T 1a12_A 364 GT 365 (413)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=10 Score=41.36 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=101.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcC---CCce------------eeeecc-CCCCeeEEEEecCCCEEEEEECCC
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---MNNV------------KANKSA-HKESVRDLSFCRTDLKFCSCSDDT 250 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~~~~------------~~~~~~-~~~~V~~l~fs~dg~~Las~s~Dg 250 (713)
..|..|+.. ..+.++-..||.|..|-.. .+.+ ...+.. ....|..|+. -....++.+.+|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCCC
Confidence 456666653 4455666778999999641 1110 001111 1224666655 345566667899
Q ss_pred eEEEEEcCCCeeE--------------EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc-----------e
Q 005123 251 TVKVWDFARCQEE--------------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GR-----------E 304 (713)
Q Consensus 251 ~I~iwDl~~~~~~--------------~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-~~-----------~ 304 (713)
.|+.|-....-.+ -... ....|..|+.- ....++...||.|+.|-... ++ .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~-~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEEC-SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceec-CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 9999965431110 0000 11457777665 44556667789999995432 11 1
Q ss_pred E---EEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------------------e--E---EEeecCCC
Q 005123 305 L---CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--------------------E--L---ESFRGHRK 355 (713)
Q Consensus 305 ~---~~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~--------------------~--l---~~~~~h~~ 355 (713)
+ ..+.. ....|..|+. ...+.++.+.||.|+.|-....- . + ..+. ...
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~--G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~-~~~ 377 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAA--GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN-NVP 377 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEE--CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-SSC
T ss_pred eeccccccccCCccEEEEEe--CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-CCC
Confidence 1 11111 1234666654 34455566788889888653210 0 0 1111 111
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
.|..|+. +....++...||.|+.|=...
T Consensus 378 ~v~~Ia~---G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 378 KFKSVAA---GSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred ceEEEEe---CCCeEEEEeCCCcEEEeeCCC
Confidence 5666665 456666778899999997643
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=92.05 E-value=18 Score=43.19 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc
Q 005123 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 272 ~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~ 309 (713)
.+.+++...+..++++.+.|+++|||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999999887753
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=91.75 E-value=15 Score=43.85 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=46.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCC-----CCeEEEEEeCCCCCEEEEE---ECCCcEEEEEc
Q 005123 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSG---SLDGSIFHWLV 384 (713)
Q Consensus 314 ~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~-----~~V~sl~fsp~~~~~lasg---s~DG~I~Iwd~ 384 (713)
.+.+++...+..++++-+.|+++|||++.+++++.+..... .........+..+.+|++. ..+|.+++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 46777788888999999999999999999999987754211 1111222333334444332 23566777765
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=22 Score=37.61 Aligned_cols=176 Identities=6% Similarity=-0.019 Sum_probs=102.4
Q ss_pred CCceEEEEEccCCCEEEE--EEC-------------CCcEEEEeCCCC--ceEEEEecc------CCCEEEEEEc-c--C
Q 005123 144 RCSINRVLWTPTGRRLIT--GSQ-------------SGEFTLWNGQSF--NFEMILQAH------DHAIRSMVWS-H--N 197 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Lat--gs~-------------dg~V~Iwd~~t~--~~~~~l~~h------~~~V~sl~~s-p--d 197 (713)
--+|..+....++++-+. |.. --+|.+||+.+. ++++++... .+.+..+++. . +
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346777888777764442 211 125889999999 888887643 3457888887 2 2
Q ss_pred ----CCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCc
Q 005123 198 ----DNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272 (713)
Q Consensus 198 ----g~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~ 272 (713)
+.+++.+. .+.-|.|+|+.+++..+.+..+ |.++....++ -+|.-.. -...
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--------~~pd~~~~~~--i~G~~~~--------------~~~G 221 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--------FKAERPTKFD--YGGKEYE--------------FKAG 221 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--------GSCCSCEEEE--ETTEEEE--------------ECCC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--------CccccCcceE--ECCEEeE--------------eccC
Confidence 34555554 4578999999999877665211 2233111111 1222111 1246
Q ss_pred eEEEEEcCC----CCEEEEEeCCC-cEEEEE---CCCC---ceEEEEccC--CCCeEEEEEc-CCCCEEEEEECCCeEEE
Q 005123 273 VKSVDWHPT----KSLLVSGGKDS-LVKLWD---AKSG---RELCSFHGH--KNMVLCVKWN-QNGNWVLTASKDQIIKL 338 (713)
Q Consensus 273 V~sl~~spd----g~~L~sgs~Dg-~I~IwD---l~t~---~~~~~~~~h--~~~I~si~fs-pdg~~Latgs~Dg~I~I 338 (713)
|..|+++++ ++.|......+ .++-.. +++. ..+..+-.. ...-..+++. .+|.++++--.+..|..
T Consensus 222 i~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~ 301 (381)
T 3q6k_A 222 IFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSC 301 (381)
T ss_dssp EEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEE
T ss_pred ceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEE
Confidence 889999987 67777776544 233222 1221 222222111 1334456675 57777777778889999
Q ss_pred EECCC
Q 005123 339 YDIRA 343 (713)
Q Consensus 339 wDl~t 343 (713)
|+..+
T Consensus 302 w~~~~ 306 (381)
T 3q6k_A 302 WNTQK 306 (381)
T ss_dssp EETTS
T ss_pred EeCCC
Confidence 99875
|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.47 E-value=24 Score=35.08 Aligned_cols=143 Identities=14% Similarity=0.045 Sum_probs=82.3
Q ss_pred CEEEEEECCCcEEEEeCCCCce-EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC---C----Cceee-ee-cc
Q 005123 157 RRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M----NNVKA-NK-SA 226 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~-~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~---~----~~~~~-~~-~~ 226 (713)
..+++.+.+|.|+--....... ...+.. .+.+..+......+.|+..+..|.++-+... . +..+. .+ -.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3456677788777665443211 011222 3444444444455567777778887665432 1 11110 11 12
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------CeeEEEEccCCCceEEEEEc-CCCCEEEEEeCCCcEEEEE
Q 005123 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEERSLTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 227 ~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------~~~~~~l~~h~~~V~sl~~s-pdg~~L~sgs~Dg~I~IwD 298 (713)
..+.|.++....++.+|+.++.+|.++...+.. +.....+.. .+.+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 245677775445667788999999999998732 223333432 3455555555 3456788889999999898
Q ss_pred CCC
Q 005123 299 AKS 301 (713)
Q Consensus 299 l~t 301 (713)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=40 Score=37.42 Aligned_cols=244 Identities=10% Similarity=0.068 Sum_probs=123.2
Q ss_pred cEEEEeCCCCceEEEEec--------cCCCEEEEEEccCCC-EEEEEeCCCc----------------------------
Q 005123 167 EFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHNDN-WMVSGDDGGA---------------------------- 209 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~--------h~~~V~sl~~spdg~-~L~sgs~DG~---------------------------- 209 (713)
.|.+|+++ ++.+..+.. |...+....|.-||+ -|++...+|+
T Consensus 152 ~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 46666665 333333321 334466666666664 4566655554
Q ss_pred EEEEEcCCCceeeeeccC--CCC---------------eeEEEEecCC--CEEEEEE---CCCeEEEEEcCCCeeEEEE-
Q 005123 210 IKYWQNNMNNVKANKSAH--KES---------------VRDLSFCRTD--LKFCSCS---DDTTVKVWDFARCQEERSL- 266 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~--~~~---------------V~~l~fs~dg--~~Las~s---~Dg~I~iwDl~~~~~~~~l- 266 (713)
|.|+|-.+++.+.+.... ... ..++++. |+ -.++.+- ....|..||++.++.....
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~ 309 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT 309 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence 778887777766554321 111 1222221 22 2233332 1235888998777654333
Q ss_pred -ccCC-----------CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEE-ccCCCCeEEEEEcCC--CCEEEEE
Q 005123 267 -TGHG-----------WDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQN--GNWVLTA 330 (713)
Q Consensus 267 -~~h~-----------~~V~sl~~spdg~-~L~sgs~Dg~I~IwDl~t~~~~~~~-~~h~~~I~si~fspd--g~~Latg 330 (713)
.... ..+.-..+.-||+ -|+.|+. ++| .+|+.+... .+|...+....|.|+ |.-++.+
T Consensus 310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~ 383 (591)
T 2zux_A 310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQV 383 (591)
T ss_dssp EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEE
T ss_pred ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEE
Confidence 2111 1233344444444 3333321 223 223333332 267788888888886 4566666
Q ss_pred ECCC----eEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCC-CEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE
Q 005123 331 SKDQ----IIKLYDIRAMKELESFRGH--RKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (713)
Q Consensus 331 s~Dg----~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~-~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~ 403 (713)
.+++ -..+.|.++++.+...... .+......|.++.. --+.+ ++ .+|+.+. +.+... .-...-..
T Consensus 384 ~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~G-~~i~~~--~p~~~N~~ 455 (591)
T 2zux_A 384 HEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAKG-VKIGSG--VPSSTNFG 455 (591)
T ss_dssp CCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTTS-CBCSSC--CCSCCSEE
T ss_pred ecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCCC-CEecCC--CCCCccee
Confidence 6542 3567899999999877543 34444444555222 12222 22 4566533 221111 01122345
Q ss_pred EEEcCCCcEEEEeCCcEEEEecC
Q 005123 404 LAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 404 l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
|-|+.|...-.-..+.|.-|+..
T Consensus 456 i~WdGDl~relld~~~i~k~~~~ 478 (591)
T 2zux_A 456 IWWDGDLLREQLDSNRIDKWDYQ 478 (591)
T ss_dssp ECCSSSSSCEEEETTEEEEEETT
T ss_pred EEECCCCcHhhhCCceEEecccC
Confidence 77888874444445567777754
|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.44 E-value=12 Score=37.35 Aligned_cols=143 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCC-------CeeE---EEEcc
Q 005123 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEE---RSLTG 268 (713)
Q Consensus 199 ~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~-------~~~~---~~l~~ 268 (713)
..+++.+.+|.|+--...............+.+..+........|+..+..|.++-+.+.. +..+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 3456677788877665443221111112334555555555666777888888877665422 2211 1122
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEEEccCCCCeEEEEEc-CCCCEEEEEECCCeEEEEE
Q 005123 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWN-QNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 269 h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t-------~~~~~~~~~h~~~I~si~fs-pdg~~Latgs~Dg~I~IwD 340 (713)
....|.++....++.+|+.++.+|.++...+.. +.....++. ...+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234677765444567788899999999987742 223333332 3345555554 3456788889999988888
Q ss_pred CCC
Q 005123 341 IRA 343 (713)
Q Consensus 341 l~t 343 (713)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=64 Score=35.78 Aligned_cols=268 Identities=9% Similarity=0.081 Sum_probs=140.6
Q ss_pred CCCceEEEEEccCCC-EEEEEECCCc----------------------------EEEEeCCCCceEEEEecc--CCC---
Q 005123 143 NRCSINRVLWTPTGR-RLITGSQSGE----------------------------FTLWNGQSFNFEMILQAH--DHA--- 188 (713)
Q Consensus 143 H~~~V~~v~~spdg~-~Latgs~dg~----------------------------V~Iwd~~t~~~~~~l~~h--~~~--- 188 (713)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+++.+.++... ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 555688888888884 4667766665 788888888877765432 111
Q ss_pred ------------EEEEEEccCC--CEEEEEe---CCCcEEEEEcCCCceeeee--ccCC-----------CCeeEEEEec
Q 005123 189 ------------IRSMVWSHND--NWMVSGD---DGGAIKYWQNNMNNVKANK--SAHK-----------ESVRDLSFCR 238 (713)
Q Consensus 189 ------------V~sl~~spdg--~~L~sgs---~DG~I~vwdl~~~~~~~~~--~~~~-----------~~V~~l~fs~ 238 (713)
..++++. |+ -.++.+- ....|..||.+.+++.... .... ..+.-..+.-
T Consensus 257 WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred cccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 2334432 22 2333332 1234778888777653322 1110 1223333344
Q ss_pred CCCE-EEEE----ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCC--CCEEEEEeCCC----cEEEEECCCCceEEE
Q 005123 239 TDLK-FCSC----SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDS----LVKLWDAKSGRELCS 307 (713)
Q Consensus 239 dg~~-Las~----s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spd--g~~L~sgs~Dg----~I~IwDl~t~~~~~~ 307 (713)
||+- |+.+ ..||++ +|... .+|...+....|.|+ +..++.+.+++ -..+.|.++++.+..
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~ 406 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWG 406 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEE
Confidence 4432 3322 233332 44432 268888888888886 34666666542 356789999999887
Q ss_pred EccC--CCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 308 FHGH--KNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 308 ~~~h--~~~I~si~fspd--g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.... .+......|.++ |--+.+ +. .||+.+ ++.+.... ....-..+-|.-+..+.|+- .+.|.-|+
T Consensus 407 ~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 407 VYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp ECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred cCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 7543 334444445554 222332 22 466754 44443221 11222356676644444543 23677888
Q ss_pred cCCCC--ceEEEec------ccCCCeEEEEEcCCC--cEE-EE-eCCcEEEEecCCCCC
Q 005123 384 VGHET--PQVEIHN------VHDNTVWDLAWHPIG--YLL-CS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 384 ~~~~~--~~~~~~~------~h~~~V~~l~~spdg--~~l-aS-~Dg~v~iWd~~~~~~ 430 (713)
...+. .++.... ....+..+..+..|. .+| .+ ++..++||.......
T Consensus 477 ~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 477 YQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp TTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred cCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 65443 1222111 012234444555554 333 45 556799998765555
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=80.67 E-value=91 Score=36.19 Aligned_cols=146 Identities=7% Similarity=0.031 Sum_probs=76.0
Q ss_pred CCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeecc-------CCCCeeEEEEecCC-CEEEEEECCCe----E
Q 005123 186 DHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTD-LKFCSCSDDTT----V 252 (713)
Q Consensus 186 ~~~V~sl~~spdg-~~L~sgs~DG~I~vwdl~~~~~~~~~~~-------~~~~V~~l~fs~dg-~~Las~s~Dg~----I 252 (713)
...|.+|+++++. ..++++...+.|...+ +.++.-..+.. ....|.+|++.+.. ..++++..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999864 5667777777665554 22332222222 13469999998743 44555443311 3
Q ss_pred EEEEc-CCCeeEEEEccC---------CCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEcc------CCCCe
Q 005123 253 KVWDF-ARCQEERSLTGH---------GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG------HKNMV 315 (713)
Q Consensus 253 ~iwDl-~~~~~~~~l~~h---------~~~V~sl~~spd-g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~------h~~~I 315 (713)
.||.. ..++.-..+... ...+..|++++. .+.++++...+.|. ...+.++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 33333 233322222110 113567888874 34566665444332 22333443333321 12457
Q ss_pred EEEEEcC-CCCEEEEEECC
Q 005123 316 LCVKWNQ-NGNWVLTASKD 333 (713)
Q Consensus 316 ~si~fsp-dg~~Latgs~D 333 (713)
..|.+++ +++.|+++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899987 44566666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 713 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-39 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-31 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-35 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-26 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-23 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-28 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-25 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-27 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-25 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-11 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-12 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 8e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-05 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 144 bits (363), Expect = 7e-39
Identities = 62/307 (20%), Positives = 128/307 (41%), Gaps = 24/307 (7%)
Query: 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 198
+L+ +R + RV++ P +++ S+ +W+ ++ +FE L+ H +++ + + H+
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258
+ S IK W H +V +S S S D T+K+W+
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 259 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318
++ TGH V+ V + +L+ S D V++W + H+++V C+
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 319 KWNQNGNWVL--------------------TASKDQIIKLYDIRAMKELESFRGHRKDVT 358
W ++ + S+D+ IK++D+ L + GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSN 416
+ +H ++ +S + D ++ W ++ ++ N H++ V L +H + S
Sbjct: 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 417 DHTTKFW 423
D T K W
Sbjct: 310 DQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 123 bits (309), Expect = 1e-31
Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 20/224 (8%)
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 196
+++ + +++ V P G +++ S+ +W Q+ H +R + +
Sbjct: 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 153
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC------------------- 237
+ + S + ++ W KA H+ V +S+
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 238 -RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296
+ S S D T+K+WD + +L GH V+ V +H ++S D +++
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 273
Query: 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
WD K+ R + + + H++ V + +++ +V+T S DQ +K+++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.0 bits (206), Expect = 3e-18
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 45/218 (20%)
Query: 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312
K W R E+ +L+GH V V +HP S++VS +D+ +K+WD ++G + GH
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 313 NMVLCV------------------------------------------KWNQNGNWVLTA 330
+ V + NG+ +++A
Sbjct: 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119
Query: 331 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390
S+D+ IK+++++ +++F GHR+ V + + S S D ++ W+V + +
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECK 178
Query: 391 VEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRP 428
E+ H + V ++W P ++ T ++
Sbjct: 179 AELRE-HRHVVECISWAPESSYSSISEATGSETKKSGK 215
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 134 bits (336), Expect = 5e-35
Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 9/285 (3%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205
I + W R L++ SQ G+ +W+ + N + + + ++ + N++ G
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 206 DGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262
+ N + + A D + + S DTT +WD Q+
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322
+ TGH DV S+ P L VSG D+ KLWD + G +F GH++ + + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 323 NGNWVLTASKDQIIKL--YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380
NGN T S D +L S +T++++ ++G D +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCN 295
Query: 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHTTKFW 423
W + HDN V L G + S D K W
Sbjct: 296 VWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 108 bits (270), Expect = 2e-26
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 2/172 (1%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
W+ ++ H + S+ + + VSG + K W + + H+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD--VKSVDWHPTKSLLVSG 288
+ + F F + SDD T +++D QE + + + SV + + LL++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
D +WDA GH N V C+ +G V T S D +K+++
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 99.4 bits (246), Expect = 3e-23
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 2/156 (1%)
Query: 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 204
+ + P R ++G+ LW+ + H+ I ++ + N N +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 205 DDGGAIK--YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262
D + + + + + + +SF ++ + DD VWD +
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
L GH V + + +G DS +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.0 bits (180), Expect = 8e-15
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 2/120 (1%)
Query: 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH--AIRSMVWSH 196
+ + IN + + P G TGS L++ ++ M + I S+ +S
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
+ +++G D W + + H V L + + S D+ +K+W+
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (153), Expect = 2e-11
Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 47/228 (20%)
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320
+ R+L GH + ++ W LLVS +D + +WD+ + ++ + + V+ +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 321 NQNGNWVLTASKDQIIKLYDIRAMKELESF------------------------------ 350
+GN+V D I +Y+++ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 351 --------------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396
FVSG+ D S W V +
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTG 224
Query: 397 HDNTVWDLAWHPIGYLL--CSNDHTTKFWCRNRPGDTARDKFNMGQNQ 442
H++ + + + P G S+D T + + + +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403
M+ + RGH + A+ W VS S DG + W + T +V + + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMT 102
Query: 404 LAWHPIGYLLCSNDHTTKFWCRN 426
A+ P G + N
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYN 125
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (284), Expect = 6e-28
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 24/261 (9%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205
I V ++P G+ L TG++ +W+ ++ MILQ H+ I S+ + + + +VSG
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---- 261
++ W S + S D V+VWD
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 262 ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE------------LC 306
E S TGH V SV + +VSG D VKLW+ ++
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF- 365
++ GHK+ VL V QN ++L+ SKD+ + +D ++ L +GHR V ++A
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362
Query: 366 ----HEEYFVSGSLDGSIFHW 382
F +GS D W
Sbjct: 363 SLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 106 bits (264), Expect = 3e-25
Identities = 65/323 (20%), Positives = 125/323 (38%), Gaps = 48/323 (14%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------------------AHDH 187
+ V ++ G L TG + ++ + L + D
Sbjct: 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS 247
IRS+ +S + ++ +G + I+ W + H++ + L + + K S S
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 248 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---- 303
D TV++WD Q +L+ + +G D V++WD+++G
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 304 ---ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE------------ 348
E S GHK+ V V + ++G V++ S D+ +KL++++
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA--- 405
++ GH+ V ++A ++EY +SGS D + W P + + H N+V +A
Sbjct: 303 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVAN 360
Query: 406 ---WHPIGYLL--CSNDHTTKFW 423
P + S D + W
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.6 bits (228), Expect = 1e-20
Identities = 53/307 (17%), Positives = 113/307 (36%), Gaps = 42/307 (13%)
Query: 158 RLITGSQSGEFTLWNGQS-FNFEMILQA---HDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213
+ + + L+N ++ L H + + +S++ ++ +G + Y
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYR 89
Query: 214 QNNMNNVK-----------------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
++ + V ++ + +R + F + ++D +++WD
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 316
+ L GH D+ S+D+ P+ LVSG D V++WD ++G+ + +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELESFRGHRKDVTALAWHPFHEEY 369
+G ++ S D+ ++++D E ES GH+ V ++ + +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 268
Query: 370 FVSGSLDGSI-----------FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSN 416
VSGSLD S+ + + H + V +A + S
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Query: 417 DHTTKFW 423
D FW
Sbjct: 329 DRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.0 bits (224), Expect = 4e-20
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 25/197 (12%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW-------QNNMNNVKAN 223
W+ ++ + L D V + ++ +G A++ W +++ +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------------CQEERSLTGHGW 271
+ HK+SV + F R S S D +VK+W+ E + GH
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGN 325
V SV ++SG KD V WD KSG L GH+N V+ V N
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 326 WVLTASKDQIIKLYDIR 342
T S D +++ +
Sbjct: 370 VFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 36/195 (18%)
Query: 112 AAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLW 171
A ++D V ++ + S ++ S+ V++T G+ +++GS LW
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 172 NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV 231
N Q+ N + + + + + + ++ V
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDF------------------------------V 311
Query: 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD------WHPTKSLL 285
++ + D S S D V WD L GH V SV P ++
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 286 VSGGKDSLVKLWDAK 300
+G D ++W K
Sbjct: 372 ATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 9e-08
Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 25/193 (12%)
Query: 275 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNGNWVLT 329
+D + + L++ R EL H ++V CVK++ +G ++ T
Sbjct: 20 LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79
Query: 330 ASKDQIIKLYDIRAMKELESFRG------------------HRKDVTALAWHPFHEEYFV 371
++ ++Y + + + ++ + P ++
Sbjct: 80 GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLA 137
Query: 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDT 431
+G+ D I W + + + + + + L+ + T R G
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 432 ARDKFNMGQNQGY 444
+
Sbjct: 198 SLTLSIEDGVTTV 210
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 25/198 (12%)
Query: 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286
H V + F + + T +V+ + L+ K + T
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNT----- 114
Query: 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346
S + V ++ +G ++ T ++D++I+++DI K
Sbjct: 115 -------------------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155
Query: 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406
+ +GH +D+ +L + P ++ L + TV
Sbjct: 156 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 407 HPIGYLLCSNDHTTKFWC 424
S D + W
Sbjct: 216 DGKYIAAGSLDRAVRVWD 233
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (274), Expect = 6e-27
Identities = 58/274 (21%), Positives = 102/274 (37%), Gaps = 13/274 (4%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
G R+++GS +W+ + L H + S N S D
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR----T 78
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
N + + + + + + S S D T++VWD Q L GH
Sbjct: 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 138
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
V +VSG D +VK+WD ++ L + GH N +G V++ S
Sbjct: 139 AV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGS 194
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--P 389
D I+++D+ + + GH+ + + VSG+ D ++ W +
Sbjct: 195 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQ 251
Query: 390 QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFW 423
++ N H + V L ++ + S+D T K W
Sbjct: 252 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 1e-19
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 13/234 (5%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+R+++GS+ +W+ ++ +L H A+R + + + D +K
Sbjct: 103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD--FMVK 160
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
W H V L F + S S DT+++VWD +LTGH
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHV--VSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTA 330
++ ++LVSG DS VK+WD K+G+ L + G V Q N N+V+T+
Sbjct: 219 LTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 331 SKDQIIKLYDIRAMKELESFR-----GHRKDVTALAWHPFHEEYFVSGSLDGSI 379
S D +KL+D++ + + + G V + + GS +G+
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTE 329
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 2e-16
Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 14/260 (5%)
Query: 91 YMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRV 150
+ + + D + +
Sbjct: 82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141
Query: 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210
GRR+++G+ +W+ ++ LQ H + R + +VSG +I
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSI 199
Query: 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270
+ W N + H+ + D S + D+TVK+WD Q ++L G
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 257
Query: 271 WDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSF-----HGHKNMVLCVKWNQNG 324
+V K+ +++ D VKLWD K+G + + G +V ++ +
Sbjct: 258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317
Query: 325 NWVLTASKD----QIIKLYD 340
S++ + + D
Sbjct: 318 LVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.2 bits (183), Expect = 3e-15
Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 43/210 (20%)
Query: 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM 314
W + + L GH V + + +VSG D+ +K+W A +G+ L + GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 315 VLCVKWNQN--------------------------------------GNWVLTASKDQII 336
V + N V++ S+D +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396
+++DI + L GH V + VSG+ D + W ET +
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG- 175
Query: 397 HDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426
H N V+ L + I + S D + + W
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAI 210
L++G+ +W+ ++ LQ + H N N++++ D G +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 211 KYWQNNMNNVKAN-----KSAHKESVRDLSFCRTDLKFCSCSDDTT----VKVWDF 257
K W N V + T L S + T + V DF
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (258), Expect = 3e-25
Identities = 51/281 (18%), Positives = 96/281 (34%), Gaps = 18/281 (6%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+++++G + +W+ + + IL H ++ + + S D +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
L + +CS D ++ VWD A +
Sbjct: 81 DVNTGEMLNT----LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136
Query: 272 DVKS-VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330
+ +VS D +K+W+ + + + +GHK + C+++ V++
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 194
Query: 331 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW-------- 382
S D I+L+DI L GH + V F + VSG+ DG I W
Sbjct: 195 SSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKIKVWDLVAALDP 251
Query: 383 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFW 423
T + H V+ L + + S+D T W
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 7e-14
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 17/179 (9%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
+ +L H A+ + + SGD IK W + + HK
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCEFVRTLNGHKRG 180
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+ L + D S S D T+++WD R L GH V+ + + + +VSG
Sbjct: 181 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAY 236
Query: 291 DSLVKLWDAKSGRE---------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
D +K+WD + + L + H V ++++ ++++S D I ++D
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 9e-13
Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 15/156 (9%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+ +++ S +WN + F L H I + D +VSG I+
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIR 201
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-------- 263
W ++ + + + S + D +KVWD +
Sbjct: 202 LW--DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 264 -RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
R+L H V + + +VS D + +WD
Sbjct: 260 LRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 49/262 (18%), Positives = 85/262 (32%), Gaps = 8/262 (3%)
Query: 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283
+S + V L + K S D T+K+WD + +R LTGH V + +
Sbjct: 11 RSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343
+ S V + H + L KD+ I ++D+ +
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS----KDRSIAVWDMAS 124
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403
++ R A+ F ++Y VS S D +I W V N H +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIAC 183
Query: 404 LAWHPIGYLLCSNDHTTKFW-CRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLP 462
L + + S+D+T + W + + + +G G +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243
Query: 463 EGPTTPGPFAPGLTRNEGTIPG 484
+ P AP T T+
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVE 265
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 4/161 (2%)
Query: 264 RSLTGHGWDVKSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322
+ + K V +VSG +D+ +K+WD + GH VLC+++++
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
++ + + M S +++
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVWDM 122
Query: 383 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFW 423
+ + H V + + + S D T K W
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 163
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.4 bits (199), Expect = 5e-17
Identities = 45/349 (12%), Positives = 93/349 (26%), Gaps = 72/349 (20%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVS 203
I+ W ++ + E ++ + + L+ H+ + + W+ + N +V+
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 204 GDDGGAIKYWQNNMNNVK--ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261
W K + R + + + KF S + + F +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 262 E----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL------------ 305
+ + V S+DWHP LL +G D +++ A
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 306 ------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359
V V ++ NG+ V S D + L D + + + A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 360 LAWHPFHEEYFVSGSLDGS-IFHW------------------------------------ 382
+ + +G +F +
Sbjct: 249 VTFIT-ESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 383 --LVGHETPQVEIHNVHDNTVWDLAWHPIGYLL------CSNDHTTKFW 423
G + ++H N+V ++ G D W
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.6 bits (176), Expect = 3e-14
Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 9/226 (3%)
Query: 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWH 279
A S E + ++ + + C ++ V +++ + + + L H V VDW
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQ 334
P + +V+ G D +W K + + N A
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394
I + + + + +GS D + +VE
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA--YIKEVEER 178
Query: 395 NVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQ 440
+ + + + S+ C + G +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.8 bits (148), Expect = 8e-11
Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 6/181 (3%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
+ + + +S N + + + + A ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+ ++F + D V ++ + + S G K +
Sbjct: 246 LLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAMKE 346
D + + HKN V + G T D + ++D+R+++
Sbjct: 305 DKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
Query: 347 L 347
Sbjct: 364 A 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.9 bits (138), Expect = 1e-09
Identities = 21/182 (11%), Positives = 52/182 (28%), Gaps = 8/182 (4%)
Query: 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW 194
+ + + ++ V ++ G R+ S L + L + + ++ +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251
Query: 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254
+ + +G D + + K + + + S + + D
Sbjct: 252 ITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 310
Query: 255 WDFARCQEERSLTGHGWDVKSVDWHP----TKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310
A + H V + S + G D + +WD +S +
Sbjct: 311 EGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES--ALKD 367
Query: 311 HK 312
K
Sbjct: 368 LK 369
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 2e-15
Identities = 37/311 (11%), Positives = 79/311 (25%), Gaps = 71/311 (22%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDL 234
+AHD I S+ +++ VS G +K W N + + + K HK + +
Sbjct: 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 235 SFCRT-------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK----- 282
+ + S + + R E + + D+ D
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 283 ----------SLLVSGGKDSLVKLWDAKSGRE------------------LCSFHGHKNM 314
LV+ +W + + S
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW-----HPFHEEY 369
V ++ G + T + +++ ++ ++ L +F +
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 370 FVSGSLDGSIFHW---------------LVGHETPQVEIHNVHDNTVWDLAWHPIG--YL 412
S + H + H + V L+++ G
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 413 LCSNDHTTKFW 423
D +FW
Sbjct: 306 SAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.0 bits (185), Expect = 3e-15
Identities = 31/252 (12%), Positives = 64/252 (25%), Gaps = 57/252 (22%)
Query: 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDW- 278
AH + +S C + SCS D +KVWD E H + VD
Sbjct: 12 AHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 279 ------HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL---- 328
L+ + + + E K +L ++ W L
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 329 -----------TASKDQIIKLYDIRAMKE------------------LESFRGHRKDVTA 359
++ + +ES + T+
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 360 LAWHPFHEEYFVSGSLDGSI-----FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL-- 412
+ +G +G++ + + N++ + + P G L
Sbjct: 190 VDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 413 LCSNDHTTKFWC 424
+ + ++
Sbjct: 248 IAHDSNSFGCIT 259
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 4e-12
Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 43/227 (18%)
Query: 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIK------YWQNNMNNVKANKSAHKESVRDLS 235
S+ S + +G + G ++ + + + S+R +
Sbjct: 180 PMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 236 FCRTDLKFCSCSDDTTV---KVWDFARCQ-------------EERSLTGHGWDVKSVDWH 279
F D + +++ + H V S+ ++
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV----LCVKWNQNGNWVLTASKDQI 335
+ L S G D ++ WD K+ + + + H + + + +++G+ + +
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358
Query: 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
L +K + E LD SI +
Sbjct: 359 KFL---------------KKGWRSGMGAD-LNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 40/334 (11%), Positives = 89/334 (26%), Gaps = 75/334 (22%)
Query: 154 PTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIR---------SMVWSHNDNW 200
++ S G +W+ + + H +
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81
Query: 201 MVSGDDGGAIKYWQNNMNNVKA----------NKSAHKESVRDLSFCRTDL-----KFCS 245
+ + G + +++ + + K S L + ++ + +
Sbjct: 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141
Query: 246 CSDDTTVKVWDFARCQEE------------------RSLTGHGWDVKSVDWHPTKSLLVS 287
T +W F +E S SVD + L+ +
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIAT 200
Query: 288 GGKDSLVKL------WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
G + V++ + S + N + VK++ G+ + A +
Sbjct: 201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260
Query: 342 ----------------RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385
+ + H V +L+++ E S DG + W V
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK 319
Query: 386 HETPQVEIHNVHDNTV----WDLAWHPIGYLLCS 415
+ ++ N+H + + LA G L
Sbjct: 320 TKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 7e-12
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 30/216 (13%)
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD------HAIR 190
S V + G + TG +G + + ++ ++IR
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
Query: 191 SMVWSHNDNWMVSGDDGGAIKYWQ----------------NNMNNVKANKSAHKESVRDL 234
S+ +S + + D + + + + AH V L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK----SVDWHPTKSLLVSGGK 290
SF + CS D ++ WD + +L H D++ + L G
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326
+ + K G + CV +++ W
Sbjct: 355 --VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 30/156 (19%)
Query: 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------------GHR 354
+ H + V ++ ++ S D +K++D + + H
Sbjct: 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 355 KDVTALAWHPFHEEYFVSGSLDGSIFHW---------LVGHETPQVEIHNVHDNTVWDLA 405
+ A+ F + S G + + V E + ++ ++ W L
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 406 WHPIGY-------LLCSNDHTTKFWCRNRPGDTARD 434
W + TT W + D +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 2e-15
Identities = 45/307 (14%), Positives = 96/307 (31%), Gaps = 17/307 (5%)
Query: 126 NPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-----EM 180
P A+ ++T + + V + R + TG + G +W+ ++
Sbjct: 35 GPGIPRHARQINTLNHGE--VVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQL 91
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--KSAHKESVRDLSFCR 238
D+ IRS + ++ G + + W + ++ + L+
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
SC D + VWD R GH +D + L +GG D+ V+
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR-SW 210
Query: 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358
H + + + + G W+ + +++ + + H V
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVL 269
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSN 416
+L + ++FVS D + W + + ++V + S
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSG 326
Query: 417 DHTTKFW 423
D +
Sbjct: 327 DKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 3/171 (1%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
W+ + Q H + S++ + +G ++ W
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+ L +C T ++ + +++ ++ L H V S+ + VS GK
Sbjct: 227 IFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
D+L+ W G + + VL + + +++T S D+ +Y++
Sbjct: 286 DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 7/192 (3%)
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
++ D + ++ +L HG V +V + +GGK VK+WD
Sbjct: 22 QMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDI 79
Query: 300 -----KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354
KS N + K +G ++ + + ++D+ A
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414
A + H V H + + G L
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199
Query: 415 SNDHTTKFWCRN 426
+ +
Sbjct: 200 TGGLDNTVRSWD 211
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 6e-08
Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 8/166 (4%)
Query: 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343
V D+L+ + R++ + H +V V + V T +K++DI
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81
Query: 344 MKELE-----SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 398
+ + P + G ++ W + TP+++
Sbjct: 82 PGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS 140
Query: 399 NTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGY 444
+C + + + + G G
Sbjct: 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 15/214 (7%), Positives = 47/214 (21%), Gaps = 1/214 (0%)
Query: 1 MMYGDPQQHHNQQQPGGGGDHFNRGPQPPQPPGPPMMRQPSASSSTLNPPEFHHLPSNPP 60
++ + + + + +
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181
Query: 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT 120
+ +D T + R Q+ + + L
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241
Query: 121 VAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
+ N K L+ + + + + G+ ++ + W +
Sbjct: 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SI 300
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214
++ S S +D ++V+G ++
Sbjct: 301 FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.001
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 7/127 (5%)
Query: 327 VLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386
+ D +I R +++ + H + V A+ + +G G + W + H
Sbjct: 25 PVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISH 81
Query: 387 ETPQVEIHNV----HDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQ 442
+ + + DN + P G L + + T R K + +
Sbjct: 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 443 GYGEQNA 449
A
Sbjct: 142 PACYALA 148
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.3 bits (175), Expect = 2e-14
Identities = 40/279 (14%), Positives = 73/279 (26%), Gaps = 10/279 (3%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205
I + P LI+GS G W+ S + Q H + I S+ S +
Sbjct: 15 GITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265
D K A + + D T + +
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 325
++ V + + + + + G
Sbjct: 126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 185
Query: 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385
+L + + +K + + E+ +GSLD +IF + V
Sbjct: 186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245
Query: 386 HETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFW 423
++ N H + V +L W L+ D K W
Sbjct: 246 RPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 4e-09
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 2/119 (1%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
I + + + + S +
Sbjct: 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227
Query: 241 LKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+ S DT + ++ R + ++L H V ++ W S LVS G D+ +K W+
Sbjct: 228 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.3 bits (123), Expect = 7e-08
Identities = 13/158 (8%), Positives = 49/158 (31%), Gaps = 2/158 (1%)
Query: 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244
++ + + D + + E+ +
Sbjct: 130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189
Query: 245 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD-AKSGR 303
R + +++ + + + + L+ +G D+ + ++ + +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+ + + HK+ V + W ++++ D IK +++
Sbjct: 250 IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 2e-06
Identities = 19/166 (11%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323
++++GH + ++ +P L+SG D + W + S + H N+++ + ++
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKA 57
Query: 324 GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383
+ + D + + + + A ++ + S G I +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPG 429
+ + + V + I S+ +
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 7e-06
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 404
+ L++ GH K +TAL +P +SGS DG I W +H H N + L
Sbjct: 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
Query: 405 AWHPIGYLLCSNDHTTKFWCRN 426
+ T
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGI 74
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANKSAHKE 229
+ + + ++ + +G I + + +AHK+
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 230 SVRDLSFCRTDLKFCSCSDDTTVKVWD 256
V +L + S D +K W+
Sbjct: 260 GVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 9/126 (7%)
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360
L + GH + + N +++ S D I + +M + H + +L
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52
Query: 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTT 420
E +S + Q ++ + +++ + + L+ +
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 421 KFWCRN 426
Sbjct: 113 IIKSVR 118
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 72.6 bits (176), Expect = 3e-14
Identities = 26/313 (8%), Positives = 66/313 (21%), Gaps = 32/313 (10%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFT--LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 203
I V + +++ ++ + + + +M N + V
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVV 102
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF------ 257
+D I + + + + D + + +
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162
Query: 258 ---ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-------ELCS 307
++ + T + + L SL D +
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWH 363
K D + + + +
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 364 PFHEE--YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL--CSNDHT 419
E Y+ G + + V +T +V + + DL + +D
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDV--KTRKVTEVKNN---LTDLRLSADRKTVMVRKDDGK 337
Query: 420 TKFWCRNRPGDTA 432
+ +P D
Sbjct: 338 IYTFPLEKPEDER 350
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 12/177 (6%), Positives = 38/177 (21%), Gaps = 18/177 (10%)
Query: 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-------LQAHDHAIRSMVW 194
+ + L S + NF + +
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANK-------SAHKESVRDLSFCRTDLKFCSCS 247
+G+ Y +++ NV + +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 248 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304
+ + +D R +T ++ + + ++ D + + + +
Sbjct: 296 EKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.3 bits (131), Expect = 1e-08
Identities = 16/227 (7%), Positives = 49/227 (21%), Gaps = 19/227 (8%)
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 196
T + S P G +++ + + + +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDA 188
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTDLKFCSCSDD 249
+ + + N + S + + D
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248
Query: 250 TTVKVW-------DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302
D + L + + ++ +D K+
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308
Query: 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 349
+ KN + ++ + + V+ D I + + ++ +
Sbjct: 309 KV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.8 bits (109), Expect = 6e-06
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 11/128 (8%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-------ILQAHDHAIRSMVWSHND 198
S N P G N + L++ V
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
Query: 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258
+ + G + + V K ++ DL DD + +
Sbjct: 289 AYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Query: 259 RCQEERSL 266
+ ++ER++
Sbjct: 345 KPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 21/200 (10%), Positives = 50/200 (25%), Gaps = 14/200 (7%)
Query: 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-- 292
F D + + D + + ++ V + G
Sbjct: 9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352
+ ++D ++G + F + V + ++NG + + A+ I D+ K R
Sbjct: 67 FLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 353 HRKDVTALAWHPFH-------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
+T + E ++ ++ + A
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 406 WHPIGYLL--CSNDHTTKFW 423
+ L S
Sbjct: 186 FDADSKNLYYLSYRSLDPSP 205
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 20/184 (10%), Positives = 46/184 (25%), Gaps = 5/184 (2%)
Query: 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 333
+ D+ P L++ + D L + V+ +
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 334 -QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392
+ +YD R + E F + +V A+ + V+ + L + +E
Sbjct: 65 GDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 393 IHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 452
T + ++ + + D E + +A
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183
Query: 453 GRMP 456
Sbjct: 184 PAFD 187
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.1 bits (172), Expect = 8e-14
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 2/169 (1%)
Query: 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321
+ +L GH V + + +++G D +++++D+ + + L GH V +K+
Sbjct: 4 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381
G V ++ + + + + +Y V+GS D ++
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 382 W-LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPG 429
W L + V+ ++ H + G
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.4 bits (165), Expect = 8e-13
Identities = 38/333 (11%), Positives = 88/333 (26%), Gaps = 62/333 (18%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+ITG+ +++ + F + L HD + ++ ++H + D
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHG 270
+ + + ++K+ S D T+ VW +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 271 WDVKSVD---------------------WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
+++VSG D+ + +WD + L
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198
Query: 310 GHKNMVLCVKWNQNGNWVLTASKDQIIK-------------------------------- 337
GH + + ++ ++AS D I+
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258
Query: 338 ------LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
+ A F H +++A+ + VSGS + + +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317
Query: 392 EIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFW 423
+ +W + + + D +
Sbjct: 318 ANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.0 bits (151), Expect = 4e-11
Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 4/203 (1%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284
H SV D + +DD ++V+D + L+GH V ++ + L
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 285 LVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343
+ ++ K + L + +N +++T S+D + ++ +
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403
+ L +H E + G L G + + + +DNT+
Sbjct: 128 ESSVPDHGEEHDYP--LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 404 LAWHPIGYLLCSNDHTTKFWCRN 426
+ L + HT + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTI 208
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 8/237 (3%)
Query: 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDG 207
V P + + ++ L + H S + N +VSG
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180
Query: 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 267
+ W S H + + + + S S DTT+++WD + +L
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240
Query: 268 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 327
GH V + + + + + F H + + + +
Sbjct: 241 GHTALVGLLRLSDKFLVSA----AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 328 LTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383
L + + +Y++R+ K + + + ++ + + + DG F +
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 39/287 (13%), Positives = 79/287 (27%), Gaps = 7/287 (2%)
Query: 57 SNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAID 116
S D + +V Y I+ SRD T+
Sbjct: 71 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130
Query: 117 MLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS 175
+ D P + + R + V G +++GS +W+
Sbjct: 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 190
Query: 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235
IL H I S ++ H +S I+ W + H V
Sbjct: 191 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV---- 246
Query: 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295
S + + R + H ++ ++ ++ G ++
Sbjct: 247 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFN 306
Query: 296 LWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+++ +SG+ + + + + V + V KD L +
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEIL 352
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.3 bits (170), Expect = 1e-13
Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 31/308 (10%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWSHNDNWMV 202
I+ + P+ L+ S G T++ + L + H + + N + +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 203 --SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260
G +K + +A + D K + S D ++V D
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGREL----CSFHG 310
+ + + + ++ + + +S V+ + +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYD---------------IRAMKELESFRGHRK 355
+ + +S D + + R +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415
V ++ + P H+ + + DG I W + ++++V +A L +
Sbjct: 253 PVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311
Query: 416 NDHTTKFW 423
+D T K
Sbjct: 312 SDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 24/195 (12%)
Query: 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----NKSAHKESVRDLSFCRTD 240
+ N + ++ G + +++++ + + +
Sbjct: 147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206
Query: 241 LKFCSCSDDTTVKVWD---------------FARCQEERSLTGHGWDVKSVDWHPTKSLL 285
+ S D V V F + T + V S+++ P L
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
+ G D ++ W+ ++ +++ +F N VK + N + A+ D K
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA----A 321
Query: 346 ELESFRGHRKDVTAL 360
++ + + +
Sbjct: 322 IDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 4e-11
Identities = 27/273 (9%), Positives = 74/273 (27%), Gaps = 30/273 (10%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA---NKSAHKESVRDLSFC 237
I QA I + + + ++ G++ ++ ++ +K + +F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 238 RTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295
+ +KV + L++ D L++
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 296 LWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 349
+ D ++ + + K + N + ++ + ++ + + ++
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 350 ---FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG--------------HETPQVE 392
G + + +A P +E + S+DG +
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245
Query: 393 IHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFW 423
V + + P L +D W
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 67.5 bits (164), Expect = 2e-12
Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 21/232 (9%)
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
+L + D + + D + + + L G+ V + L G+D V + D
Sbjct: 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 300 KSGR-----ELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKELESFRGH 353
E+ +++ + + A + D ++ +
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT------------V 401
+HP + S F V ET ++ + + D +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-ETGKILLVDYTDLNNLKTTEISAERFL 209
Query: 402 WDLAWHPIG-YLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 452
D Y + + + K + + G + + A F
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 19/213 (8%), Positives = 54/213 (25%), Gaps = 18/213 (8%)
Query: 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209
+ R IT + + + + ++ N G
Sbjct: 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271
Query: 210 IKYWQNNMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266
+++ + + H + + D + + ++ + +L
Sbjct: 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV------DATL 325
Query: 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326
SV + G D K + V+ ++N++G
Sbjct: 326 NPEAEISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR---VVQGEFNKDGTE 381
Query: 327 VL-----TASKDQIIKLYDIRAMKELESFRGHR 354
V ++ + + D + ++ + R
Sbjct: 382 VWFSVWNGKDQESALVVVDDKTLELKHVIKDER 414
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.3 bits (157), Expect = 5e-12
Identities = 41/285 (14%), Positives = 78/285 (27%), Gaps = 14/285 (4%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
TP G ++ + + + S I H H S + + SGD G ++
Sbjct: 25 NTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83
Query: 212 YWQNNMNNVKANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266
W S + + S + +
Sbjct: 84 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143
Query: 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326
++SG D+ V +++ + +F H V V++N +G+
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203
Query: 327 VLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH------EEYFVSGSLDGSIF 380
+ D I LY+ + F A + F S S D +I
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263
Query: 381 HWLV--GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFW 423
W V + + ++ + W + S + F
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.2 bits (149), Expect = 4e-11
Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 12/249 (4%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----AIRSMVWSHNDNW 200
+P+G +G G +W+ + I S
Sbjct: 60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 119
Query: 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260
+ G + + + + + + S SDD TV +++
Sbjct: 120 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 179
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-------CSFHGHKN 313
+ + + H V SV ++P SL S G D + L++ G + H
Sbjct: 180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 239
Query: 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373
V + W+ +G + +AS D+ IK++++ +K ++ + + ++ VS
Sbjct: 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299
Query: 374 SLDGSIFHW 382
S +G I
Sbjct: 300 SANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 3e-08
Identities = 14/172 (8%), Positives = 41/172 (23%), Gaps = 1/172 (0%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
+ + R + G +++ + + +
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
F T + + H V + W P + + S
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 291 DSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDI 341
D +K+W+ + + + + + +++ S + I +
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 21/234 (8%), Positives = 42/234 (17%), Gaps = 6/234 (2%)
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
L K C+ + V + T H P+ SG
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 291 DSLVKLWDAKSGRELC-----SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
V++WD + F G + ++ V +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
R + + + +
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 406 WHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNF 459
+ D T + T + + +N + G
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.6 bits (155), Expect = 7e-12
Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 4/282 (1%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSG 204
+I + + G+ L + G W+ + + + H I + + +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 264
D + A+K S + L + + + E
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133
Query: 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324
++ + V + ++ K + KL A H + + N
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 325 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384
S+ I + A +GSLD S+ W +
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 385 --GHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFW 423
+ P + ++V + W ++ D KFW
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.5 bits (147), Expect = 9e-11
Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 1/165 (0%)
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWN 321
++ GH + ++ L S + + WD +G F H M+ +K
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381
G+ + D + + + + ++ L + + I
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426
+ G T +N + + S H K +
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 169
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.5 bits (126), Expect = 4e-08
Identities = 30/253 (11%), Positives = 69/253 (27%), Gaps = 4/253 (1%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANKSAHKESVRDLSFCRT 239
+ H+ AI ++ S + + S D G I W + + + H + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
+ S D +KV + S + +
Sbjct: 67 G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359
G+ + + + + ++ V + ++ E+++ + +
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP--IGYLLCSND 417
+ S + E H V ++W P + S D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245
Query: 418 HTTKFWCRNRPGD 430
++ W N+P D
Sbjct: 246 NSVIVWNMNKPSD 258
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.9 bits (122), Expect = 9e-08
Identities = 21/219 (9%), Positives = 52/219 (23%), Gaps = 4/219 (1%)
Query: 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLL 285
H +++ LS S + + WD + R H + + L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
D L + SG + +K + + + + +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
+ + + +A + V G + L G +V+
Sbjct: 131 ---TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187
Query: 406 WHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGY 444
+ +L+ ++ + +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 2e-06
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 4/131 (3%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
S ++ A ++ N + + H
Sbjct: 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTKSLLVS 287
V +S+ +++ + S D +V VW+ + + + V SV W ++ +VS
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVS 285
Query: 288 GGKDSLVKLWD 298
G+DS +K W+
Sbjct: 286 AGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 3e-06
Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 1/107 (0%)
Query: 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 404
+ GH K +TAL+ + S +G I W + +VH + +
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 405 AWHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVF 451
G L + K + AV
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (109), Expect = 4e-06
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 2/150 (1%)
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
+ A SV + +
Sbjct: 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 207
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGH 311
V + S T H V V W P L +G D+ V +W+ + H
Sbjct: 208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 267
Query: 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+ N +++A +D IK +++
Sbjct: 268 AMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 61.9 bits (149), Expect = 1e-10
Identities = 27/226 (11%), Positives = 67/226 (29%), Gaps = 21/226 (9%)
Query: 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+L + D + + D + + + V + L+ G+D+ + + D
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID 89
Query: 299 AKSGR-----ELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG 352
+ E+ +++ + + + + D ++ +
Sbjct: 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 149
Query: 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT------------ 400
V +HP + S + F V ET +V + N D
Sbjct: 150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-ETGKVLLVNYKDIDNLTVTSIGAAPF 208
Query: 401 VWDLAWHPIG-YLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 445
+ D W Y + + +++ K + ++G+ G
Sbjct: 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 27/271 (9%), Positives = 61/271 (22%), Gaps = 38/271 (14%)
Query: 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHNDNWM-VS 203
+ +GR L+ + + + + + + S + D +
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----------DLKFCSCSDDTTVK 253
K S +V ++ + + T K
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186
Query: 254 VWDFAR---CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCS 307
V + G + W + ++ +S R L
Sbjct: 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246
Query: 308 FHGHKNMVLCVKWNQNGN---WVLTASKDQII-------KLYDIRAMKELESFRGHRKDV 357
+ + W + D I K + A K++ +G
Sbjct: 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 306
Query: 358 TALAWHPFHEEYFV------SGSLDGSIFHW 382
+ HP +V + S+ +
Sbjct: 307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 23/219 (10%), Positives = 53/219 (24%), Gaps = 34/219 (15%)
Query: 170 LWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK 228
+ N + + W + +M + ++ + + + A K
Sbjct: 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249
Query: 229 ESVRDLSFCRTDLKFCSC------------SDDTTVKVWDFARCQEERSLTGHGWDVKSV 276
K+ T K ++ L G G +
Sbjct: 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 309
Query: 277 DWHPTK-------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---------VLCVKW 320
HP + V ++D K+ V+ ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
Query: 321 NQNGNWVL-----TASKDQIIKLYDIRAMKELESFRGHR 354
N+ G+ V + + + D + +K + R
Sbjct: 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 1e-10
Identities = 31/258 (12%), Positives = 71/258 (27%), Gaps = 22/258 (8%)
Query: 147 INRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMIL--------QAHDHAIRSMVWSH 196
+ V ++P + L +G +SG+ +W + Q I + W
Sbjct: 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125
Query: 197 NDNWMVSGDDGGAIK------YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250
+ +G N++ V + S +
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185
Query: 251 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW----DAKSGRELC 306
+ F +R+ G V+ V++ P V + + +
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245
Query: 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR--KDVTALAWHP 364
+ + T D I+++D+ K ++ + + +
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
Query: 365 FHEEYFVSGSLDGSIFHW 382
+S SLDG++ +
Sbjct: 306 TGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 4e-09
Identities = 19/210 (9%), Positives = 49/210 (23%), Gaps = 13/210 (6%)
Query: 145 CSINRVLWTPTGRRLITGSQSGEFTL--WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 202
I+ + W GRRL + + + S N + H I + +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 203 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC--------RTDLKFCSCSDDTTVKV 254
+ + + S +
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM 314
+ + G D+ +++WD + + + + K
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 315 VLCVKWN---QNGNWVLTASKDQIIKLYDI 341
+ + +++ S D + Y++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 12/129 (9%)
Query: 311 HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK--ELESFRGHRKD-VTALAWHPFH 366
+N + ++ N + K ++ D K + F GH VT + + P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 367 E-EYFVSGSLDGSIFHWLVGHETPQVEI-------HNVHDNTVWDLAWHPIGYLLCSNDH 418
+Y SG G + W + + V + D++W G LC
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 419 TTKFWCRNR 427
+
Sbjct: 136 GRDNFGVFI 144
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 4e-07
Identities = 17/169 (10%), Positives = 44/169 (26%), Gaps = 15/169 (8%)
Query: 273 VKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGR--ELCSFHGH-KNMVLCVKW--NQNGNW 326
+ + PT + + GK + V+ D + + F GH ++V VK+ + +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 327 VLTASKDQIIKLYDIRA--------MKELESFRGHRKDVTALAWHP-FHEEYFVSGSLDG 377
+ + + + ++ + F+ ++ ++W V D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426
E+ +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 18/218 (8%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDF--ARCQEERSLTGHGWD-VKSVDWHP 280
S + LS+ T V+ D ++ TGHG V +V + P
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 281 TKS--LLVSGGKDSLVKLWDAKSGRELCSFH--------GHKNMVLCVKWNQNGNWVL-- 328
K L SG + V +W +E S + + W+ G +
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133
Query: 329 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388
+D + L GH + + A ++ DGS+ +
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193
Query: 389 PQVEIHNV--HDNTVWDLAWHPIGYLLCSNDHTTKFWC 424
+ V D+ + P + +
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 60.9 bits (146), Expect = 2e-10
Identities = 28/319 (8%), Positives = 73/319 (22%), Gaps = 51/319 (15%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGA 209
+I + + + S ++ + + + + ++ V + G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 210 IKYWQNNMNNVKA------NKSAHKESVRDLSFCRTDLKFCSCSDDTT------------ 251
I + S+ + + + + T
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 252 VKVWDFARCQEERSLTGHGWD--VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
++V+ A E + + V + SL V+G + + K L +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 310 G----------------------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E 346
+ ++ + TA D++ K
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406
+ F + P + + D+T + +A+
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAF 299
Query: 407 HPIGYLL--CSNDHTTKFW 423
G L + +
Sbjct: 300 DKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 17/224 (7%), Positives = 48/224 (21%), Gaps = 8/224 (3%)
Query: 88 VVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSI 147
R+ L+ A V P + +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 148 NRVLWTPTGRRLIT-----GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 202
+ TG+ + ++ G + + + +
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 203 SGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261
+ D + A E D + + +D + +
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRK 283
Query: 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305
++ V + L GG + + +++ + ++
Sbjct: 284 LIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 3e-06
Identities = 14/169 (8%), Positives = 35/169 (20%), Gaps = 20/169 (11%)
Query: 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVL-TASKDQI 335
++ + + + D S S K + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 336 IKLYDIRAMKEL------ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH-------- 381
I D+ K + + + A P +E + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 382 ----WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426
+ V+ + G L + K +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 11/128 (8%), Positives = 35/128 (27%), Gaps = 7/128 (5%)
Query: 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLD 376
+++ + + + D+ + +S + P + +V +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 377 GSIFHW-----LVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSNDHTTKFWCRNRPGD 430
G I+ + +++ A P G + + + T +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 431 TARDKFNM 438
+ F+
Sbjct: 122 PRLEVFST 129
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 11/231 (4%), Positives = 50/231 (21%), Gaps = 3/231 (1%)
Query: 42 ASSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDS 101
++ H PP + + + + ++
Sbjct: 104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163
Query: 102 RDRTVLQATPA--AAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRL 159
+ T A+ + + + ++ + +
Sbjct: 164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 223
Query: 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219
T + + ++ A + + + +
Sbjct: 224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK 283
Query: 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270
+ + + ++F + K + V++ ++ +++ G
Sbjct: 284 LIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 23/215 (10%), Positives = 45/215 (20%), Gaps = 25/215 (11%)
Query: 245 SCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKS 301
+ + + V D + ++ +T G P + + K + D +
Sbjct: 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65
Query: 302 GRELCSFHGHKNM-----VLCVKWNQNGNWVLTASKDQIIKLYDIR-----------AMK 345
G L + + +G + ++L
Sbjct: 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125
Query: 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVW 402
+ +T LAW D + G I +
Sbjct: 126 SRRKAFEAPRQITMLAWARDG-SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPD 184
Query: 403 DLAWHPIGYLLCS--NDHTTKFWCRNRPGDTARDK 435
LA T + TA
Sbjct: 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 8e-07
Identities = 19/254 (7%), Positives = 56/254 (22%), Gaps = 14/254 (5%)
Query: 53 HHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPA 112
P G + + V T R+ D+ + +A A
Sbjct: 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133
Query: 113 AAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN 172
+ +A+ + S + ++ ++ +
Sbjct: 134 --PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191
Query: 173 GQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESV 231
+S + + + + +
Sbjct: 192 HESSGVMATP--------FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243
Query: 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291
+ + ++ +D + + + SV+ S + GG
Sbjct: 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGAL 300
Query: 292 SLVKLWDAKSGREL 305
+ +DA++ +
Sbjct: 301 GDLAAYDAETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 17/159 (10%), Positives = 36/159 (22%), Gaps = 17/159 (10%)
Query: 282 KSLLVSGGKDSLVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKL 338
+ +++ + + + D + + + G T +K + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 339 YDIRAMKELESFRGHR--------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384
D+ + L D LA + ++ L
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFW 423
ET + LAW G L
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM 159
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 9e-07
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVS 203
IN ++ RL+ + +G+ + S + + + +A A R+ W V+
Sbjct: 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
Y + + + V V D +
Sbjct: 256 YHRALDRIYLLVDQRDEWR----------------------HKTASRFVVVLDAKTGERL 293
Query: 264 RSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311
+ S++ L D + + DA+SG EL S +
Sbjct: 294 AKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 18/189 (9%), Positives = 44/189 (23%), Gaps = 5/189 (2%)
Query: 95 RMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTP 154
+ + + T + A + V + I+ +
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL--SSG 226
Query: 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214
+ L E +G + H R + + +
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286
Query: 215 NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272
A + ++ + L + + D T+ + D +E RS+ G
Sbjct: 287 AKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345
Query: 273 VKSVDWHPT 281
+ +
Sbjct: 346 PQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 0.001
Identities = 16/188 (8%), Positives = 46/188 (24%), Gaps = 18/188 (9%)
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS----------KDQI 335
+ + D ++GR + G + +G+++ AS +
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 336 IKLYDIRAMKELESFRGHRKDVTALAWHP------FHEEYFVSGSLDGSIFHWLVGHETP 389
++++D + + +P + + + +V E
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 390 QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 449
+ + P + + D + G + + N
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 199
Query: 450 VFAGRMPG 457
+ G
Sbjct: 200 PAYSQKAG 207
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 7e-06
Identities = 20/233 (8%), Positives = 57/233 (24%), Gaps = 32/233 (13%)
Query: 150 VLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208
+ + L S + + Q A + G
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185
Query: 209 AIKYWQNNMNNVKAN------KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262
++ A A S + + + + A
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGR 303
+ ++ G+ K+ ++ +V+ K++ A G+
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305
Query: 304 ELCSFHGHKNMVLCVKWNQNGNWVL--TASKDQIIKLYDIRAMKELESFRGHR 354
+ + + Q+G ++ +++ +YD + ++ S +
Sbjct: 306 TSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.6 bits (104), Expect = 3e-05
Identities = 14/188 (7%), Positives = 42/188 (22%), Gaps = 26/188 (13%)
Query: 120 TVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE 179
A + + A CS G + + S +
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK 246
Query: 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239
+ ++ ++ + MV+ ++
Sbjct: 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL---------------- 290
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLW 297
+ + Q ++ +G D ++ + ++ ++
Sbjct: 291 -------AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 298 DAKSGREL 305
DA S ++
Sbjct: 343 DAASDQDQ 350
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 14/206 (6%), Positives = 38/206 (18%), Gaps = 25/206 (12%)
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--------TKSLLVSGGKDSLVKLWD 298
V+V+D + SV + LL S
Sbjct: 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152
Query: 299 AKSGREL-------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351
+ C + + + + A +
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTG 208
Query: 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIG 410
A + + SI + ++ + +++ + G
Sbjct: 209 AQNCSSQAAQANYPGMLVWAV---ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265
Query: 411 YLL--CSNDHTTKFWCRNRPGDTARD 434
+ + + +
Sbjct: 266 FQMVAKLKNTDGIMILTVEHSRSCLA 291
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.0 bits (107), Expect = 8e-06
Identities = 26/268 (9%), Positives = 66/268 (24%), Gaps = 6/268 (2%)
Query: 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMN 218
I S+S ++ + S + + V S + + V+ + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSII-DTAT 63
Query: 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 278
N S + ++ + + ++ G +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 279 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338
P L + + + + +G V A+ D +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 398
+ + +A +P + +V+ ++ T ++
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 399 NTVWDLAWHPIG---YLLCSNDHTTKFW 423
+A P G Y+ S +T
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 17/231 (7%), Positives = 49/231 (21%), Gaps = 10/231 (4%)
Query: 243 FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKS 301
+ + S+ + V D + ++ + P + V+ + V + D +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA-- 359
+ + + +T + + D + + + + +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 360 ------LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413
L ++ + V I D T +A +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 414 CSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEG 464
+ T + + N
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.51 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.47 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.46 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.28 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.27 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.26 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.25 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.21 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.2 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.18 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.16 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.15 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.15 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.09 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.01 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.96 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.66 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.51 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.41 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.41 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.28 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.24 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.14 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.07 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.06 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.03 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.03 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.0 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.93 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.92 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.8 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.77 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.71 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.67 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.59 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.36 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.29 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.27 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.03 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.95 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 96.89 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.77 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.7 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.69 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.65 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.65 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.35 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 96.29 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.15 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 96.14 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.06 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.93 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 95.28 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.14 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 94.74 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 93.87 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 87.87 | |
| d1co6a_ | 107 | Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10 | 84.45 | |
| d1jdla_ | 118 | Cytochrome c2 {Rhodospirillum centenum [TaxId: 340 | 81.65 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-40 Score=339.60 Aligned_cols=284 Identities=22% Similarity=0.426 Sum_probs=267.2
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
.|++|++.|++|+|++++++||+|+.||+|+|||+.+++.+.++..|...|.+++|++++.++++++.++.+.+|+....
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+....+..+...+.++.|+++++.+++++.|+.+++||+++++.+..+..|...+.+++|++++++|++++.|+.|++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeE
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspd--------------------g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~ 358 (713)
+++++.+..+..+...+.+++|+++ +.++++++.|+.|++||+++++.+.++.+|...|+
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 9999999999999999999998765 35789999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEe
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWC 424 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd 424 (713)
+++|++ ++++|++++.||.|+|||+.+.+. +..+.+|.+.|++++|++++.+|++ .|++|+|||
T Consensus 252 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECS-SSSCEEEEETTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999 789999999999999999987664 4556689999999999999966654 899999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-39 Score=342.42 Aligned_cols=278 Identities=17% Similarity=0.299 Sum_probs=249.8
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce-----EEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~-----~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.|.+.|+||+|++++++||+|+ ||.|+|||+.+... ......|++.|++++|++|+++|++++.||.|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 8999999999999999999987 89999999876432 22345788999999999999999999999999999987
Q ss_pred CC--ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 217 MN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 217 ~~--~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.. +....+..|...|.+++|++++.++++++.|+.|++||+.+++.......|...|.+++|+++++.+++++.|+.|
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v 207 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54 4566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
++||+++++.+..+. +...|.+++|++++++|++++.|+.|++||+++.+.. ....|...|++++|++ ++++|++++
T Consensus 208 ~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s 284 (337)
T d1gxra_ 208 RSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTG 284 (337)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred cccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECC-CCCEEEEEe
Confidence 999999999887775 7889999999999999999999999999999988765 4556999999999999 789999999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEec
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCR 425 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~ 425 (713)
.||.|++||+.++...... .|...|++++|++++.+|++ .|++|+|||+
T Consensus 285 ~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 285 KDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999999877655443 47889999999999977754 8999999987
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-38 Score=334.94 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=251.3
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
..+++.+.+++++++|+.||++. ++.|.+||+.+.+....+.+|...|++++|+|++++|++|+.||+|+|||+.+.+.
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence 34666788899999999999986 56799999999999999999999999999999999999999999999999988764
Q ss_pred --eeeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEEEeCCCcEE
Q 005123 221 --KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVK 295 (713)
Q Consensus 221 --~~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~sgs~Dg~I~ 295 (713)
...+..|...|.+++|++++++|++++. +..++|||+++++.+..+.+|...|++++|+++++ .|++|+.|+.|+
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 3456788999999999999999999986 45699999999998889999999999999999887 488899999999
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee-------cCCCCeEEEEEeCCCCC
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEE 368 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~-------~h~~~V~sl~fsp~~~~ 368 (713)
+||+++++....+..|...|++++|++++++|++++.|+.|++||+++++.+..+. +|...|++++|++ +++
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~ 251 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGT 251 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSS
T ss_pred cccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCC
Confidence 99999999999999999999999999999999999999999999999988777664 5788999999999 789
Q ss_pred EEEEEECCCcEEEEEcCCCCceEEEeccc--CCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVH--DNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 369 ~lasgs~DG~I~Iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
+|++|+.||.|+|||+++++....+...+ ...+.++.|+.+..++++.||.|++||.+
T Consensus 252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999999999999998776544433222 24677888988887778899999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.3e-38 Score=335.32 Aligned_cols=282 Identities=22% Similarity=0.384 Sum_probs=243.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe------------------ccCCCEEEEEEccCCCEEEE
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------------------AHDHAIRSMVWSHNDNWMVS 203 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~------------------~h~~~V~sl~~spdg~~L~s 203 (713)
+|++.|+||+|++||++||+|+ |+.|+|||+.+++.+..+. .|...|++|+|++++++|++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s 138 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence 6999999999999999999986 8999999999988776654 35667999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC
Q 005123 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (713)
Q Consensus 204 gs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~ 283 (713)
|+.||.|++||...++.+.....|...|.+++|++++..+++++.++.|++||+++.........+...+..+.+..+++
T Consensus 139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (388)
T d1erja_ 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218 (388)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888877775555444444445889
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee----------
Q 005123 284 LLVSGGKDSLVKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---------- 346 (713)
Q Consensus 284 ~L~sgs~Dg~I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~---------- 346 (713)
+|++++.|+.|++||+++++.+..+. +|...|++++|++++++|++++.|+.|++||+++.+.
T Consensus 219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 298 (388)
T d1erja_ 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298 (388)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence 99999999999999999988776653 5778899999999999999999999999999976432
Q ss_pred --EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEE------cCCCcEEEE--e
Q 005123 347 --LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW------HPIGYLLCS--N 416 (713)
Q Consensus 347 --l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~------spdg~~laS--~ 416 (713)
......|...|++++|++ ++++|++|+.||.|+|||+++++. +..+.+|.+.|+++++ ++++.+|++ .
T Consensus 299 ~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~-~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~ 376 (388)
T d1erja_ 299 TCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 376 (388)
T ss_dssp CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred ceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcE-EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence 345567889999999999 789999999999999999987764 4556789999999986 457767654 8
Q ss_pred CCcEEEEecC
Q 005123 417 DHTTKFWCRN 426 (713)
Q Consensus 417 Dg~v~iWd~~ 426 (713)
|++|+||+++
T Consensus 377 Dg~I~iW~~~ 386 (388)
T d1erja_ 377 DCKARIWKYK 386 (388)
T ss_dssp TSEEEEEEEE
T ss_pred CCEEEEEeee
Confidence 9999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.7e-37 Score=318.56 Aligned_cols=286 Identities=24% Similarity=0.379 Sum_probs=254.6
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
..++|++|++.|+||+|++++++||+|+.||+|+|||+.+++.+..+..|...|.+++|++++++|++++.|+.|++|+.
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCc----eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 216 NMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 216 ~~~~----~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
.... ....+..|...+...... .+..++....|..+..|+............+...+..+.+.+...++++++.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence 6543 344455566555554444 56678888899999999998888888888888899999999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEee--cCCCCeEEEEEeCCCCCE
Q 005123 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 292 g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~--~h~~~V~sl~fsp~~~~~ 369 (713)
+.|++||+++++.+.++.+|...|++++|++++++|++++.|+.|++||++..+.+..+. .+...|++++|++ ++++
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 284 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSCE
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CCCE
Confidence 999999999999999999999999999999999999999999999999999988877664 4567799999999 7899
Q ss_pred EEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEE--EeCCcEEEEe
Q 005123 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC--SNDHTTKFWC 424 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la--S~Dg~v~iWd 424 (713)
|++|+.||.|+|||+.+.. .+..+.+|.+.|++|+|++++.+|+ +.|++|+|||
T Consensus 285 l~~g~~dg~i~iwd~~~~~-~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 285 LLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999997765 4556678999999999999997665 4899999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.4e-37 Score=328.46 Aligned_cols=283 Identities=16% Similarity=0.212 Sum_probs=235.9
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc--eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~--~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
..++|+|++|++|+++||+|+.|+.|+|||..+++ .+..+.+|.+.|++|+|++++++|++++.|++|+|||++++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 34789999999999999999999999999997765 5677889999999999999999999999999999999987754
Q ss_pred e--eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee----EEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 221 K--ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 221 ~--~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~----~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
. ..+..|...|++++|+++++.|++++.|++|++|+++.... ......|...|.+++|+|++++|++|+.|++|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence 3 34467888999999999999999999999999999865433 23345688899999999999999999999999
Q ss_pred EEEECCCC------------------ceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC
Q 005123 295 KLWDAKSG------------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 295 ~IwDl~t~------------------~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
++||+... +.+.....|...|.+++|++++++|++++.|+.|++||+.+++.+..+..|...
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence 99998643 244556678889999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEE----------------------------------------Eecc
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE----------------------------------------IHNV 396 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~----------------------------------------~~~~ 396 (713)
|.+++|++ ++.+|++| .|+.+++|+.+....... +...
T Consensus 246 v~s~~fs~-d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
T d1k8kc_ 246 LLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323 (371)
T ss_dssp EEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred ceeeeecC-CCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence 99999999 67766654 577777765533221111 0123
Q ss_pred cCCCeEEEEEcCCC----cEE--EEeCCcEEEEecCC
Q 005123 397 HDNTVWDLAWHPIG----YLL--CSNDHTTKFWCRNR 427 (713)
Q Consensus 397 h~~~V~~l~~spdg----~~l--aS~Dg~v~iWd~~~ 427 (713)
|.+.|+++++.+.+ ..+ ++.||.|+|||++.
T Consensus 324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 78899999997754 234 44899999999854
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-35 Score=306.78 Aligned_cols=284 Identities=15% Similarity=0.259 Sum_probs=232.1
Q ss_pred EEEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 136 ~~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
+.+.+.||++.|+||+|++|+++||+|+.||.|+|||+++++.+..+. .|...|++++|++++++ ++++.|+.|++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 457889999999999999999999999999999999999998888774 68999999999999875 5667799999999
Q ss_pred cCCCce---eeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 215 NNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 215 l~~~~~---~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
...... ......+...+.+++|+++++++++++ ++.+++|+..+ ..... ....+.+++|++++++|++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccccccccccccccccccccc
Confidence 765432 222345677899999999998777665 56899999543 22222 34568899999999999999999
Q ss_pred CcEEEEECCCCceEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeE---EEeecCCCCeEEEEEeCCCC
Q 005123 292 SLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHE 367 (713)
Q Consensus 292 g~I~IwDl~t~~~~~-~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l---~~~~~h~~~V~sl~fsp~~~ 367 (713)
+.|++||+++++... ....|...|++++|++++++|++++.|+.|++||+.++..+ ..+..|...|++++|++ ++
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~ 236 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DN 236 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 999999998876543 34468899999999999999999999999999999876654 44567889999999999 78
Q ss_pred CEEEEEECCCcEEEEEcCCCCceE-EEecc-cCCCeEEEEEcCCCcEEE-EeCCcEEEEecC
Q 005123 368 EYFVSGSLDGSIFHWLVGHETPQV-EIHNV-HDNTVWDLAWHPIGYLLC-SNDHTTKFWCRN 426 (713)
Q Consensus 368 ~~lasgs~DG~I~Iwd~~~~~~~~-~~~~~-h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~ 426 (713)
.+|++++.||.|+|||+++..... ..... +...|.++.|.++..+++ +.|++|+|||+.
T Consensus 237 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 999999999999999998765433 33333 445678887776665554 489999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-35 Score=309.91 Aligned_cols=244 Identities=18% Similarity=0.313 Sum_probs=219.7
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCce--EEEEeccCCCEEEEEEccCCCEEEEEeC--CCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~--~~~l~~h~~~V~sl~~spdg~~L~sgs~--DG~I~vwd 214 (713)
.+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+.+. ...+..|.+.|.+++|++++++|++++. +..++||+
T Consensus 53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~ 132 (311)
T d1nr0a1 53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999999999988764 3567889999999999999999999876 45699999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~ 293 (713)
+++++....+..|...|++++|++++.+ |++++.|++|++||+++.+....+..|...|++++|++++++|++++.|+.
T Consensus 133 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~ 212 (311)
T d1nr0a1 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 212 (311)
T ss_dssp TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccc
Confidence 9999998889999999999999999875 788999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCC---CeEEEEEe
Q 005123 294 VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK---DVTALAWH 363 (713)
Q Consensus 294 I~IwDl~t~~~~~~~~-------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~---~V~sl~fs 363 (713)
|++||+++++.+..+. +|...|++++|++++++|++|+.|++|+|||+++++++.++..|.. .+.++.|+
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~ 292 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence 9999999988877664 4778899999999999999999999999999999999999886653 45566664
Q ss_pred CCCCCEEEEEECCCcEEEEEcC
Q 005123 364 PFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 364 p~~~~~lasgs~DG~I~Iwd~~ 385 (713)
++.|++++.||.|++||.+
T Consensus 293 ---~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 ---KQALVSISANGFINFVNPE 311 (311)
T ss_dssp ---SSCEEEEETTCCEEEEETT
T ss_pred ---CCEEEEEECCCEEEEEeCC
Confidence 4578999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-34 Score=307.42 Aligned_cols=242 Identities=18% Similarity=0.290 Sum_probs=224.5
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC--ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~--~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
...+|.+.|++++|++|+++|++|+.||.|+|||+... +....+..|...|.+++|++++.+|++++.|+.|++|++.
T Consensus 92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~ 171 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45679999999999999999999999999999998754 5567788899999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
+++.......|...|.+++|++++..+++++.|+.|++||+++++.+..+. +...|.+++|++++++|++++.|+.|++
T Consensus 172 ~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i 250 (337)
T d1gxra_ 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccc
Confidence 999998889999999999999999999999999999999999998887765 7889999999999999999999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+++++.. ....|...|++++|++++++|++++.|+.|+|||+.+++.+..+. |...|++++|++ ++++|++++.|
T Consensus 251 ~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~t~s~D 327 (337)
T d1gxra_ 251 LHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGD 327 (337)
T ss_dssp EETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETT
T ss_pred ccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeC-CCCEEEEEeCC
Confidence 999988765 456689999999999999999999999999999999999988776 788999999999 78999999999
Q ss_pred CcEEEEEc
Q 005123 377 GSIFHWLV 384 (713)
Q Consensus 377 G~I~Iwd~ 384 (713)
|+|+|||+
T Consensus 328 ~~I~vWdl 335 (337)
T d1gxra_ 328 KKATVYEV 335 (337)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-34 Score=298.87 Aligned_cols=282 Identities=17% Similarity=0.312 Sum_probs=221.9
Q ss_pred EEeeCCCCCce-EEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 005123 137 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (713)
Q Consensus 137 ~~~l~~H~~~V-~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl 215 (713)
+.+|++|.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|++.|++|+|+++ ++|++++.|+.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 46789999886 66665 5889999999999999999999999999999999999999975 68999999999999999
Q ss_pred CCCceeeeeccCCC--CeeEEEEecCCCEEEEEECCCeEEEEEc------------------------------------
Q 005123 216 NMNNVKANKSAHKE--SVRDLSFCRTDLKFCSCSDDTTVKVWDF------------------------------------ 257 (713)
Q Consensus 216 ~~~~~~~~~~~~~~--~V~~l~fs~dg~~Las~s~Dg~I~iwDl------------------------------------ 257 (713)
...+.......... .+..+.+.+++.++++++.|++|++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 88765544433222 2233344445555555555555555554
Q ss_pred ---------------------------CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc
Q 005123 258 ---------------------------ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (713)
Q Consensus 258 ---------------------------~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~ 310 (713)
++++.+..+..+...+.++.|+++++++++++.|+.|++||++++..+..+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 241 (355)
T d1nexb2 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241 (355)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence 44444444555667788999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce
Q 005123 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 311 h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~ 390 (713)
|...|.+++|+ +++|++++.||.|++||+++.... +..|...+.++.+.+.++.+|++++ |+.|+|||+++++.+
T Consensus 242 h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 242 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316 (355)
T ss_dssp CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred ccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEE
Confidence 99999999996 579999999999999999987654 4445666666544333677776665 889999999888766
Q ss_pred EEEecccCCCeEEEEEcCCCcEEE-EeCCcEEEEecC
Q 005123 391 VEIHNVHDNTVWDLAWHPIGYLLC-SNDHTTKFWCRN 426 (713)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~la-S~Dg~v~iWd~~ 426 (713)
......|.+.|++++|+++..+++ +.||+++||.++
T Consensus 317 ~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 317 HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp CSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred EEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence 556678999999999999865554 489998777653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-34 Score=293.99 Aligned_cols=286 Identities=24% Similarity=0.474 Sum_probs=254.4
Q ss_pred CCCCCCcchhhhhhccccceeeeeeccchhceeEEEEEeccCCCceeeccCccccccCccceeeeCCCCCceeeeEEEEe
Q 005123 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (713)
Q Consensus 60 ~~~~~~~~~~~~r~~~~~~~~~v~~~~~~~~~~~ir~W~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 139 (713)
.+.+|...+..-.+... .++..+...+..||+|+....+. ..+
T Consensus 12 ~L~GH~~~I~~l~~sp~-----~~~l~s~s~Dg~i~iWd~~~~~~--------------------------------~~~ 54 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPV-----FSVMVSASEDATIKVWDYETGDF--------------------------------ERT 54 (317)
T ss_dssp EEECCSSCEEEEEECSS-----SSEEEEEESSSCEEEEETTTCCC--------------------------------CEE
T ss_pred EEcCCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCCE--------------------------------EEE
Confidence 45666655544333221 12334445667899998654320 124
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
+.+|.+.|++++|++++.++++++.++.+.+|+....+....+..|...+.++.|+++++.|++++.|+.+++||+++++
T Consensus 55 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (317)
T d1vyhc1 55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134 (317)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred EeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce
Confidence 56899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC-----------------
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK----------------- 282 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg----------------- 282 (713)
....+..|...+.+++|++++.+|++++.|+.|++||+.+.+.+..+..+...+.+++|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (317)
T d1vyhc1 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214 (317)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---CEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 283 ---SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 283 ---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
.++++++.|+.|++||+++++.+.++.+|...|++++|++++++|++++.||.|+|||+++++.+.++.+|...|++
T Consensus 215 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~ 294 (317)
T d1vyhc1 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294 (317)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred cCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEE
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
++|++ ++++|++++.||+|+|||
T Consensus 295 ~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 295 LDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEcC-CCCEEEEEeCCCeEEEeC
Confidence 99999 788999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-33 Score=291.65 Aligned_cols=280 Identities=20% Similarity=0.343 Sum_probs=230.5
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
+.|++|.+.|.+ +++.+|++||||+.||+|+|||+.+++.+.++.+|...|.+++|++ ++|++++.|+.+++|+...
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAET 86 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTT
T ss_pred EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccccc
Confidence 357899999865 3666799999999999999999999999999999999999999985 5999999999999999876
Q ss_pred CceeeeeccCCCCee--------------------------------------EEEEecCCCEEEEEECCCeEEEEEcCC
Q 005123 218 NNVKANKSAHKESVR--------------------------------------DLSFCRTDLKFCSCSDDTTVKVWDFAR 259 (713)
Q Consensus 218 ~~~~~~~~~~~~~V~--------------------------------------~l~fs~dg~~Las~s~Dg~I~iwDl~~ 259 (713)
.........+...+. ...+......+++++.|+.|++||++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 166 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166 (342)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence 554333322221111 112233455678889999999999999
Q ss_pred CeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005123 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (713)
Q Consensus 260 ~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~Iw 339 (713)
.+.+..+.+|...+..+.+ ++.+|++++.|+.|++||+++++.+..+..|...+.+++++ +++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 167 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 242 (342)
T ss_dssp TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEE
Confidence 8888888888877777666 58899999999999999999999999999999999988885 5699999999999999
Q ss_pred ECCCCeeEEEeec---CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEe----cccCCCeEEEEEcCCCcE
Q 005123 340 DIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 340 Dl~t~~~l~~~~~---h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~ 412 (713)
|+.+.+....+.. |...+.++.++ ++++++++.||+|+|||+++++.+..+. .+|...|++++|++++.+
T Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 243 DIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred ecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence 9999888777765 45667777774 5799999999999999998887655543 357788999999999988
Q ss_pred EEE--eCCc----EEEEecCC
Q 005123 413 LCS--NDHT----TKFWCRNR 427 (713)
Q Consensus 413 laS--~Dg~----v~iWd~~~ 427 (713)
+++ .||+ |++||++.
T Consensus 320 la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCCCeeEEEEEeCCC
Confidence 875 6664 99999865
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-33 Score=300.08 Aligned_cols=247 Identities=27% Similarity=0.376 Sum_probs=215.5
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~ 218 (713)
....|...|++|+|++++++|++|+.||.|++||..+++.+..+.+|...|.+++|++++..+++++.++.|++||..+.
T Consensus 116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 195 (388)
T d1erja_ 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 195 (388)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred cccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE-------ccCCCceEEEEEcCCCCEEEEEeCC
Q 005123 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-------TGHGWDVKSVDWHPTKSLLVSGGKD 291 (713)
Q Consensus 219 ~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l-------~~h~~~V~sl~~spdg~~L~sgs~D 291 (713)
........+...+..+.+..++++|++++.|+.|++||+.++..+..+ .+|...|.+++|++++++|++++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 275 (388)
T d1erja_ 196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275 (388)
T ss_dssp EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 887776665555555555568899999999999999999988776654 3577899999999999999999999
Q ss_pred CcEEEEECCCCce------------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 292 SLVKLWDAKSGRE------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 292 g~I~IwDl~t~~~------------~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
+.|++||+++++. ......|...|++++|++++++|++|+.||.|+|||+++++.+.++.+|.+.|++
T Consensus 276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~ 355 (388)
T d1erja_ 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355 (388)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence 9999999976543 3344568889999999999999999999999999999999999999999999999
Q ss_pred EEEeCC-----CCCEEEEEECCCcEEEEEcC
Q 005123 360 LAWHPF-----HEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 360 l~fsp~-----~~~~lasgs~DG~I~Iwd~~ 385 (713)
++++.. ++.+||+|+.||+|+||+++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 986431 67899999999999999984
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-32 Score=272.85 Aligned_cols=272 Identities=22% Similarity=0.459 Sum_probs=231.2
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
..+|...|+|++| |+++||+|+.||+|+|||+.+++.+.++.+|.+.|++|+| ++++|++|+.|+.|++|++..+.
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~ 86 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 86 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence 4578899999876 7999999999999999999999999999999999999988 67899999999999999999988
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe---eEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~---~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
........... ...+......++++..++.+++||..+.. ....+..|...|.++.+. ...+++++.|+.|++
T Consensus 87 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~ 162 (293)
T d1p22a2 87 MLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 162 (293)
T ss_dssp EEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred ccccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceee
Confidence 77766544443 33455577789999999999999997654 345566788888888887 567889999999999
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D 376 (713)
||+++++.+..+.++...+..+.++ +.+|++++.|+.|+|||+++.+.+..+..+...|..+.+ +..+|++++.|
T Consensus 163 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~d 237 (293)
T d1p22a2 163 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYD 237 (293)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred ecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccc---cceEEEEEcCC
Confidence 9999999999999999889888875 568999999999999999999999999999888876553 67899999999
Q ss_pred CcEEEEEcCCC--------CceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEe
Q 005123 377 GSIFHWLVGHE--------TPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWC 424 (713)
Q Consensus 377 G~I~Iwd~~~~--------~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd 424 (713)
|.|++||+... ...+..+.+|.+.|++|+|++...+.++.|++|+|||
T Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 99999997432 3356677789999999999765444455999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-32 Score=286.99 Aligned_cols=279 Identities=14% Similarity=0.218 Sum_probs=225.2
Q ss_pred CceEEEEEccCCCEEEEEECCCc-EEEEeCCCC--ceEEEEeccC-CCEEEEEEcc--CCCEEEEEeCCCcEEEEEcCCC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGE-FTLWNGQSF--NFEMILQAHD-HAIRSMVWSH--NDNWMVSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~-V~Iwd~~t~--~~~~~l~~h~-~~V~sl~~sp--dg~~L~sgs~DG~I~vwdl~~~ 218 (713)
+.+++++|+++++.|++++.+.. |+.||.... .....+.+|. ..|++++|+| ++++|++|+.||+|+|||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 45789999999999999876543 566765443 3466777774 6799999997 5679999999999999998754
Q ss_pred cee--------eeeccCCCCeeEEEEecCCCEEEEEEC--CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCC-EEEE
Q 005123 219 NVK--------ANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVS 287 (713)
Q Consensus 219 ~~~--------~~~~~~~~~V~~l~fs~dg~~Las~s~--Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~-~L~s 287 (713)
+.. ..+..+...|.+++|++++++|++++. ++.+++|+.++++.+..+.+|...|++++|++++. ++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 322 223567889999999999999988765 67899999999999999999999999999999876 4778
Q ss_pred EeCCCcEEEEECCCCceEEEEc---cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe
Q 005123 288 GGKDSLVKLWDAKSGRELCSFH---GHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~---~h~~~I~si~fspd-g~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
++.|+.|++||+++.+....+. .+...|++++|+|+ +++|++++.|+.|++||+++++.+.++.+|...+.++.|+
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence 9999999999999887766653 46678999999996 6899999999999999999999999999888776555554
Q ss_pred ---CCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCC----CeEEEEEcCCCcEEE-EeCCcEEEEec
Q 005123 364 ---PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN----TVWDLAWHPIGYLLC-SNDHTTKFWCR 425 (713)
Q Consensus 364 ---p~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~----~V~~l~~spdg~~la-S~Dg~v~iWd~ 425 (713)
+ ++.+|++++.|+.|+|||+++++.+..+ ..|.. ...++.|..++.+++ +.|++|+|||+
T Consensus 258 ~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 258 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKW-TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eecc-CCCEEEEEeCCCeEEEEECCCCCEEEEE-EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 4 5789999999999999999877644433 33332 234566777776664 48999999986
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-31 Score=275.55 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=221.5
Q ss_pred EEeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 005123 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (713)
Q Consensus 137 ~~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~ 216 (713)
.++|.+|.+.|++|+|++ |++|+.||+|++||+.+. ...|...|.+++|+++ ..+++++.|++|++|++.
T Consensus 6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~ 75 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGIT 75 (287)
T ss_dssp EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEE
T ss_pred eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccccc
Confidence 457899999999999987 999999999999998753 4679999999999865 568899999999999865
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC-cEE
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVK 295 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg-~I~ 295 (713)
.. .....+.++++++++..+++ +.++.+.+|+..+++.+..+..+ ..+. +++++++.+++++.|+ .|+
T Consensus 76 ~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~v~ 144 (287)
T d1pgua2 76 KH-------EFGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPGS--AVSLSQNYVAVGLEEGNTIQ 144 (287)
T ss_dssp EE-------ECSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCEE--EEEECSSEEEEEETTTSCEE
T ss_pred cc-------ccccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccc-ceee--eeeccCcceeeeccccceee
Confidence 32 23456778888887766665 45667999999998888777633 3444 4455677888887765 699
Q ss_pred EEECCCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-EeecCCCCeEEEEEeCC--------
Q 005123 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPF-------- 365 (713)
Q Consensus 296 IwDl~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~-~~~~h~~~V~sl~fsp~-------- 365 (713)
+|++.+.+....+. .+...+++++|++++++|++++.|+.|++||+.+++.+. .+..|...|.+++|+|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 224 (287)
T d1pgua2 145 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 224 (287)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred eeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccccccc
Confidence 99998766555544 467789999999999999999999999999999988754 46789999999999873
Q ss_pred -CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEE-EEeCCcEEEEec
Q 005123 366 -HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSNDHTTKFWCR 425 (713)
Q Consensus 366 -~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-aS~Dg~v~iWd~ 425 (713)
++.+|++|+.|++|+|||+++....+....+|...|++++|++++.++ ++.|++|+||++
T Consensus 225 ~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 457899999999999999988777888888999999999999998655 459999999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-31 Score=285.72 Aligned_cols=245 Identities=10% Similarity=0.172 Sum_probs=211.2
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCee
Q 005123 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (713)
Q Consensus 185 h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~ 262 (713)
..+.|+|++|++|+++||+++.||.|+|||+++++ .+..+.+|...|++|+|++++++|++++.|++|+|||+.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 35789999999999999999999999999998775 5666789999999999999999999999999999999987664
Q ss_pred E--EEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE----EEEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005123 263 E--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 263 ~--~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~----~~~~~h~~~I~si~fspdg~~Latgs~Dg~I 336 (713)
. ..+..|...|.+++|++++++|++++.|++|++|+++..... .....|...|.+++|+|++++|++|+.|++|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence 4 445678889999999999999999999999999998765532 3345688899999999999999999999999
Q ss_pred EEEECCCC------------------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccC
Q 005123 337 KLYDIRAM------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 398 (713)
Q Consensus 337 ~IwDl~t~------------------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~ 398 (713)
++||+... +.+.....|...|.+++|++ ++++|++++.|+.|++||+.+... +..+..|.
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~ 243 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMA-VATLASET 243 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTE-EEEEECSS
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccc-eeeeeccc
Confidence 99997642 34566778899999999999 789999999999999999977664 44555788
Q ss_pred CCeEEEEEcCCCcEEEE-eCCcEEEEecCCCCCc
Q 005123 399 NTVWDLAWHPIGYLLCS-NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 399 ~~V~~l~~spdg~~laS-~Dg~v~iWd~~~~~~~ 431 (713)
..|.+++|++++.++++ .|+.+++|..+.....
T Consensus 244 ~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGK 277 (371)
T ss_dssp CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTE
T ss_pred ccceeeeecCCCCEEEEEcCCceEEEEeeCCCce
Confidence 99999999999988876 7899999887655433
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-30 Score=267.67 Aligned_cols=243 Identities=18% Similarity=0.328 Sum_probs=220.1
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCC----ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~----~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+..|...|++++|++++++|++|+.|+.|++|+.... .....+..|...+....+. .+..++....|..+.+|+
T Consensus 92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 170 (340)
T d1tbga_ 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEE
T ss_pred EEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccccc
Confidence 45679999999999999999999999999999996553 4456677777777666655 456778888899999999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
............+...+..+.+.+++.++++++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i 250 (340)
T d1tbga_ 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence 98888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 295 KLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
++||++..+.+..+. .+...|++++|++++++|++|+.||.|+|||+.+++.+.++.+|...|++|+|++ ++.+|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s 329 (340)
T d1tbga_ 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEE
T ss_pred EEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEE
Confidence 999999988877663 4567799999999999999999999999999999999999999999999999999 7889999
Q ss_pred EECCCcEEEEE
Q 005123 373 GSLDGSIFHWL 383 (713)
Q Consensus 373 gs~DG~I~Iwd 383 (713)
|+.||+|+|||
T Consensus 330 ~s~Dg~v~iWd 340 (340)
T d1tbga_ 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EccCCEEEEeC
Confidence 99999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.6e-31 Score=276.74 Aligned_cols=245 Identities=16% Similarity=0.231 Sum_probs=206.0
Q ss_pred eCCC-CCceEEEEEcc--CCCEEEEEECCCcEEEEeCCCCce--------EEEEeccCCCEEEEEEccCCCEEEEEeC--
Q 005123 140 LNKN-RCSINRVLWTP--TGRRLITGSQSGEFTLWNGQSFNF--------EMILQAHDHAIRSMVWSHNDNWMVSGDD-- 206 (713)
Q Consensus 140 l~~H-~~~V~~v~~sp--dg~~Latgs~dg~V~Iwd~~t~~~--------~~~l~~h~~~V~sl~~spdg~~L~sgs~-- 206 (713)
+.+| ...|++++|+| ++++|++|+.||+|+|||+...+. ...+..|.+.|.+++|++++++|++++.
T Consensus 58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~ 137 (325)
T d1pgua1 58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137 (325)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc
Confidence 4566 56899999997 568999999999999999765332 2345678899999999999999987764
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEc---cCCCceEEEEEcCC-
Q 005123 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPT- 281 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~---~h~~~V~sl~~spd- 281 (713)
++.+++|+.++++.+..+..|...|++++|++++.+ +++++.|+.|++||+.+.+....+. .|...|.+++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~ 217 (325)
T d1pgua1 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217 (325)
T ss_dssp SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence 678999999999999999999999999999998865 6789999999999998877766554 46678999999996
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEc---CCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCC--
Q 005123 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN---QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD-- 356 (713)
Q Consensus 282 g~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fs---pdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~-- 356 (713)
+++|++++.|+.|++||+++++.+.++.+|...+.++.|+ +++++|++++.|+.|+|||+++++.+..+..|...
T Consensus 218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297 (325)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred ceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence 6899999999999999999999999999888877666665 68999999999999999999999999888766643
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+..+++...++.+|++++.||.|+|||+
T Consensus 298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 3344443324568999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.8e-30 Score=265.02 Aligned_cols=287 Identities=14% Similarity=0.070 Sum_probs=214.9
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceE---EEEeccCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE---MILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYW 213 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~---~~l~~h~~~V~sl~~spdg-~~L~sgs~DG~I~vw 213 (713)
..+.+|++.|++|+|+|++++||+|+.||+|+|||+.+.... .....|...|.+++|++++ .+|++|+.||.|++|
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 356899999999999999999999999999999998765433 2334699999999999875 578899999999999
Q ss_pred EcCCCceeeeeccCCCC-eeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----EEEccC--CCceEEEEEcCCCCEEE
Q 005123 214 QNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTGH--GWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~-V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~----~~l~~h--~~~V~sl~~spdg~~L~ 286 (713)
++...........+... .....+..+...+++++.|+++++||+++.... .....+ ......+.+..++..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 99888766665554443 445556678899999999999999998643322 222222 23345666777889999
Q ss_pred EEeCCCcEEEEECCCCceEE---EEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeeE---------E-----
Q 005123 287 SGGKDSLVKLWDAKSGRELC---SFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL---------E----- 348 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~~~---~~~~h~~~I~si~fsp-dg~~Latgs~Dg~I~IwDl~t~~~l---------~----- 348 (713)
+++.|+.|++||+++.+... ........+.++.+.+ ++..+++++.||.+.+|++...... .
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence 99999999999998765432 2333445566666554 6789999999999999998643211 1
Q ss_pred -EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 349 -SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 349 -~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
....|...|++|+|+| ++.+||+|+.||.|+|||+++.+.+..+...|...+.+++++.+..++++.|+++++|..
T Consensus 245 ~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 245 LKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 1134566799999999 788999999999999999988776655544455555554444443444568989888865
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-29 Score=273.66 Aligned_cols=273 Identities=17% Similarity=0.235 Sum_probs=209.1
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCc------eEEEEeccCCCEEEEEEcc-------CCCEEEEE
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSH-------NDNWMVSG 204 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~------~~~~l~~h~~~V~sl~~sp-------dg~~L~sg 204 (713)
...++|.+.|++|+++ +++|++++.|++|+|||..+.+ .......|...+..+.... +..+++++
T Consensus 8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 4568999999999986 4699999999999999976543 2333344555544333211 23467799
Q ss_pred eCCCcEEEEEcCCCceeeee----------ccCCCCeeEEEEecC-----CCEEEEEECCCeEEEEEcCCCe--------
Q 005123 205 DDGGAIKYWQNNMNNVKANK----------SAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFARCQ-------- 261 (713)
Q Consensus 205 s~DG~I~vwdl~~~~~~~~~----------~~~~~~V~~l~fs~d-----g~~Las~s~Dg~I~iwDl~~~~-------- 261 (713)
+.||.|++|++........+ ..+...+..++|..+ +.++++++.|++|++||+....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 99999999987644221111 224456778888765 4678999999999999974211
Q ss_pred -------eEE---EEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE------ccCCCCeEEEEEcCCCC
Q 005123 262 -------EER---SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGN 325 (713)
Q Consensus 262 -------~~~---~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~------~~h~~~I~si~fspdg~ 325 (713)
... ....+...+.+++|++++ +|++|+.|++|+|||+++++.+..+ .+|...|++++|+||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 001 112345668999999987 8999999999999999999877654 45888999999999999
Q ss_pred EEEEEECCC---eEEEEECCCCeeEEEee-------------cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc
Q 005123 326 WVLTASKDQ---IIKLYDIRAMKELESFR-------------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 326 ~Latgs~Dg---~I~IwDl~t~~~l~~~~-------------~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
+|++|+.|+ .|+|||+++++.+..+. +|...|++|+|++ ++++|++++.|++|+|||++++.
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~- 322 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKE- 322 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTE-
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCC-
Confidence 999999887 49999999998877764 7999999999999 78999999999999999998875
Q ss_pred eEEEecccCCCeE----EEEEcCCCcEEEE
Q 005123 390 QVEIHNVHDNTVW----DLAWHPIGYLLCS 415 (713)
Q Consensus 390 ~~~~~~~h~~~V~----~l~~spdg~~laS 415 (713)
.+..+.+|.+.|. .++|++++..+++
T Consensus 323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~ 352 (393)
T d1sq9a_ 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAE 352 (393)
T ss_dssp EEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred EEEEECCcCCcccCCccEEEECCCCCEEEE
Confidence 5555678887775 4788888877653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=4.4e-29 Score=257.51 Aligned_cols=249 Identities=14% Similarity=0.202 Sum_probs=204.9
Q ss_pred CceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 176 ~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
|+..+++.+|.+.|++|+|++|+++|++|+.||+|+|||+++++....+. .|...|++++|++++. +++++.|++|++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence 46788999999999999999999999999999999999999998877764 6889999999999986 556678999999
Q ss_pred EEcCCCee---EEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE
Q 005123 255 WDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (713)
Q Consensus 255 wDl~~~~~---~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs 331 (713)
|++..... ......+...+.+++|+++++++++++ ++.+++|+... ..... ....+.+++|++++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred eccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccccccccccccccccccc
Confidence 99865322 222334677899999999998777665 57899999543 22222 345688999999999999999
Q ss_pred CCCeEEEEECCCCeeEE-EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE--EEecccCCCeEEEEEcC
Q 005123 332 KDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV--EIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 332 ~Dg~I~IwDl~t~~~l~-~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~--~~~~~h~~~V~~l~~sp 408 (713)
.|+.|++||+++.+... ....|...|++++|++ ++.+|++++.|+.|++||+.+..... .....|...|++++|++
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998877543 3456889999999999 78999999999999999997654332 34456889999999999
Q ss_pred CCcEEEE--eCCcEEEEecCCCCCc
Q 005123 409 IGYLLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 409 dg~~laS--~Dg~v~iWd~~~~~~~ 431 (713)
++.++++ .|+.|+|||++.....
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDH 259 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSC
T ss_pred cccceEEEcCCCEEEEEECCCCCcc
Confidence 9987764 8999999999776543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-27 Score=247.64 Aligned_cols=252 Identities=23% Similarity=0.367 Sum_probs=204.2
Q ss_pred EeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCC
Q 005123 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (713)
Q Consensus 171 wd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg 250 (713)
|+..+.+..+.+++|++.|.+ +++.+|++|++|+.||+|+|||+.+++.+..+.+|...|.+++|++ ++|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTS
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecc
Confidence 566677788899999998865 3555799999999999999999999999999999999999999986 4999999999
Q ss_pred eEEEEEcCCCeeEEEEccCCCceE--------------------------------------EEEEcCCCCEEEEEeCCC
Q 005123 251 TVKVWDFARCQEERSLTGHGWDVK--------------------------------------SVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 251 ~I~iwDl~~~~~~~~l~~h~~~V~--------------------------------------sl~~spdg~~L~sgs~Dg 292 (713)
++++|+............+...+. ...+......+++++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 157 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF 157 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence 999999876554433322221111 112222345678888999
Q ss_pred cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEE
Q 005123 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 293 ~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~las 372 (713)
.|++||.+..+.+..+.+|...+..+.+ ++.+|++++.|+.|++||+++++.+..+..|...|.++++++ ++|++
T Consensus 158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s 232 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVS 232 (342)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEE
T ss_pred eEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEE
Confidence 9999999998888888888877766655 788999999999999999999999999999999999998864 69999
Q ss_pred EECCCcEEEEEcCCCCceEEEe--cccCCCeEEEEEcCCCcEEEEeCCcEEEEecCCCCC
Q 005123 373 GSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNRPGD 430 (713)
Q Consensus 373 gs~DG~I~Iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~~~~ 430 (713)
++.|+.|++||+........+. ..|...+.++.++++..++++.|++|+|||++....
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~ 292 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred EcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCE
Confidence 9999999999997766544443 346678888889887666677999999999976543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.3e-27 Score=246.82 Aligned_cols=243 Identities=20% Similarity=0.352 Sum_probs=189.4
Q ss_pred EEEEeccCCCE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 179 EMILQAHDHAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 179 ~~~l~~h~~~V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
..++++|.+.| +|++| ++++|++|+.||+|+|||+.+++.+..+.+|...|++++|+++ .+|++++.|++|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45789998875 66666 6889999999999999999999999999999999999999975 58999999999999999
Q ss_pred CCCeeEEEEccCCC--ceEEEEEcCCCC----------------------------------------------------
Q 005123 258 ARCQEERSLTGHGW--DVKSVDWHPTKS---------------------------------------------------- 283 (713)
Q Consensus 258 ~~~~~~~~l~~h~~--~V~sl~~spdg~---------------------------------------------------- 283 (713)
...+.......... .+..+.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 87765544432221 122233334444
Q ss_pred -----------EEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec
Q 005123 284 -----------LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 284 -----------~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
+++++..|+.|++||+++++.+..+..+...+.++.|+++++++++++.|+.|++||++++..+..+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 241 (355)
T d1nexb2 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241 (355)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence 444445555555555555555555556677788999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCcEEEE-eCCcEEEEecCCCCC
Q 005123 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCS-NDHTTKFWCRNRPGD 430 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~laS-~Dg~v~iWd~~~~~~ 430 (713)
|...|.+++|+ +++|++++.||.|++||+++...... .|...+.++ .+++++.++++ .|+.|+|||++....
T Consensus 242 h~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~ 315 (355)
T d1nexb2 242 HTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 315 (355)
T ss_dssp CSSCCCEEEEC---SSEEEEECTTSEEEEEETTTCCEEEE---EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCB
T ss_pred ccccccccccc---cceeeeeecccccccccccccceecc---cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCE
Confidence 99999999995 46899999999999999987654333 345555554 56777777765 899999999976443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=2.2e-27 Score=249.38 Aligned_cols=273 Identities=9% Similarity=0.025 Sum_probs=214.3
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeec
Q 005123 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKS 225 (713)
Q Consensus 149 ~v~~sp-dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG--~I~vwdl~~~~~~~~~~ 225 (713)
.-.||| ||++||+++ +|.|+|||++++..+.. .|...|.+++|++||++|++++.+. .|++||+++++... +.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-ee
Confidence 457999 999999887 57999999988876653 6899999999999999998766543 79999999887654 56
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC----------CCcEE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK----------DSLVK 295 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~----------Dg~I~ 295 (713)
.|...|.+++|++++++|++++.++.+++|++.+++....+..+...+.+++|++++++|++++. ++.++
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 88999999999999999999999999999999999999999989999999999999999987643 44689
Q ss_pred EEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee-------EEEeecC---------------
Q 005123 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-------LESFRGH--------------- 353 (713)
Q Consensus 296 IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~-------l~~~~~h--------------- 353 (713)
+||+.+++... +..+...+.+++|++||++|++++.++.+++||...... ...+..+
T Consensus 163 v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 241 (360)
T d1k32a3 163 VYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241 (360)
T ss_dssp EEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred eeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCc
Confidence 99999876554 444677889999999999999999999999998754321 1111111
Q ss_pred ---------------------CCCeEEEEEeCCCC-------------CEEEEEECCCcEEEEEcCCCCceEEEecccCC
Q 005123 354 ---------------------RKDVTALAWHPFHE-------------EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 354 ---------------------~~~V~sl~fsp~~~-------------~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
......+...+ +. .++++++.++.|++||+.+.+. . .|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~---~~~~ 315 (360)
T d1k32a3 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--T---EVKN 315 (360)
T ss_dssp CCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--E---EEEE
T ss_pred ccccceeecccccceeecccCcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE--E---EecC
Confidence 11222333332 11 1344556788999999976542 2 2345
Q ss_pred CeEEEEEcCCCcEEEE--eCCcEEEEecCCCCCcc
Q 005123 400 TVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGDTA 432 (713)
Q Consensus 400 ~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~~~ 432 (713)
.|.+++|++||..|++ .||.|++|++++.++..
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~ 350 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 6999999999977765 89999999998876644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.9e-26 Score=230.72 Aligned_cols=233 Identities=27% Similarity=0.454 Sum_probs=198.2
Q ss_pred EeeCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 005123 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (713)
Q Consensus 138 ~~l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~ 217 (713)
.++.+|++.|++|+| ++++|++|+.|+.|++|++.++........+..... .+......++++..++.+.+|+...
T Consensus 49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSS
T ss_pred EEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--cccccccceeecccccceeEeeccc
Confidence 356789999999988 678999999999999999999888777766555443 3445677899999999999999887
Q ss_pred Cc---eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 ~~---~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
.. ....+..|...|..+.+. ...+++++.|+.|++||+++.+.+..+.++...|..+.++ +.+|++++.|+.|
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i 200 (293)
T d1p22a2 125 PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 200 (293)
T ss_dssp SSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred cccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEE
Confidence 64 344456677888877775 5678899999999999999999999999999999998887 6789999999999
Q ss_pred EEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---------CeeEEEeecCCCCeEEEEEeCC
Q 005123 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPF 365 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t---------~~~l~~~~~h~~~V~sl~fsp~ 365 (713)
+|||+++.+.+..+..+...+.++ +.++.+|++++.||.|+|||+.+ ...+..+.+|.+.|++++|+
T Consensus 201 ~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d-- 276 (293)
T d1p22a2 201 RLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-- 276 (293)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--
T ss_pred EEEecccceeeeeecccceeeeec--cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--
Confidence 999999999999999888887754 55788999999999999999753 34578889999999999994
Q ss_pred CCCEEEEEECCCcEEEEE
Q 005123 366 HEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 366 ~~~~lasgs~DG~I~Iwd 383 (713)
+.+|++++.||+|+|||
T Consensus 277 -~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 277 -EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp -SSCEEECCSSSEEEEEC
T ss_pred -CCEEEEEecCCEEEEeC
Confidence 56799999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.1e-27 Score=253.49 Aligned_cols=216 Identities=16% Similarity=0.291 Sum_probs=173.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEE-----EE-----eccCCCEEEEEEccCC-----CEEEEEeCCCcEEEEEcCCCc-
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEM-----IL-----QAHDHAIRSMVWSHND-----NWMVSGDDGGAIKYWQNNMNN- 219 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~-----~l-----~~h~~~V~sl~~spdg-----~~L~sgs~DG~I~vwdl~~~~- 219 (713)
+.++++++.||.|++|++....... .. ..+...+..++|..+. .++++++.||.|++|++....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence 3467899999999999865432211 11 1245567888887753 678999999999999974321
Q ss_pred -----------------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE------ccCCCceEEE
Q 005123 220 -----------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL------TGHGWDVKSV 276 (713)
Q Consensus 220 -----------------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l------~~h~~~V~sl 276 (713)
.......+...+.+++|++++ +|++|+.|++|+|||+.+++.+..+ .+|...|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l 237 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence 111123345668999999987 8999999999999999998876654 4688999999
Q ss_pred EEcCCCCEEEEEeCCCc---EEEEECCCCceEEEEc-------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 005123 277 DWHPTKSLLVSGGKDSL---VKLWDAKSGRELCSFH-------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~---I~IwDl~t~~~~~~~~-------------~h~~~I~si~fspdg~~Latgs~Dg~I~IwD 340 (713)
+|+|++++|++|+.|++ |+|||+++++.+..+. +|...|++|+|++|+++|++++.|++|+|||
T Consensus 238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 99999999999999874 8999999998887764 6899999999999999999999999999999
Q ss_pred CCCCeeEEEeecCCCCeE----EEEEeCCCCCEEEEE
Q 005123 341 IRAMKELESFRGHRKDVT----ALAWHPFHEEYFVSG 373 (713)
Q Consensus 341 l~t~~~l~~~~~h~~~V~----sl~fsp~~~~~lasg 373 (713)
+++++++.++++|...|. .++|++ ++..++++
T Consensus 318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~-~~~~~~~~ 353 (393)
T d1sq9a_ 318 VKTKERITTLNMHCDDIEIEEDILAVDE-HGDSLAEP 353 (393)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCT-TSCBCSSC
T ss_pred CCCCCEEEEECCcCCcccCCccEEEECC-CCCEEEEc
Confidence 999999999999988775 478888 56655544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-25 Score=231.72 Aligned_cols=254 Identities=11% Similarity=0.118 Sum_probs=193.8
Q ss_pred ceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eeeccCCCCeeEEEEecCC-CEEEEEECCCeE
Q 005123 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTV 252 (713)
Q Consensus 177 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~---~~~~~~~~~V~~l~fs~dg-~~Las~s~Dg~I 252 (713)
+++...++|++.|++|+|+|++++||+|+.||+|+|||+++.... .....|...|.+++|++++ .+|++|+.|++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 456667889999999999999999999999999999999765432 2234689999999999865 579999999999
Q ss_pred EEEEcCCCeeEEEEccCCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE----cc--CCCCeEEEEEcCCCC
Q 005123 253 KVWDFARCQEERSLTGHGWD-VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----HG--HKNMVLCVKWNQNGN 325 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~~~-V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~----~~--h~~~I~si~fspdg~ 325 (713)
++|++...........+... .....+..+...+++++.|+++++||+++....... .. .......+.+..+++
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 99999887776666544433 445556667889999999999999998764432222 11 223345667777889
Q ss_pred EEEEEECCCeEEEEECCCCeeE---EEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceE------E----
Q 005123 326 WVLTASKDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV------E---- 392 (713)
Q Consensus 326 ~Latgs~Dg~I~IwDl~t~~~l---~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~------~---- 392 (713)
.+++++.|+.|++||+++.+.. .....+...+.++.+.+.++..+++++.||.+.+|++....... .
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 9999999999999999876543 23334555677777777678899999999999999986442211 1
Q ss_pred ----EecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCCC
Q 005123 393 ----IHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 393 ----~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~~ 430 (713)
....|...|++|+|++++.+|++ .||.|+|||++....
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~ 285 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE
Confidence 11245668999999999977764 899999999976543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.4e-24 Score=222.25 Aligned_cols=230 Identities=14% Similarity=0.179 Sum_probs=187.6
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~ 220 (713)
.+|...|.+++|++++ .+++++.|++|++|++.+. .....+.++++++++..++++ .++.+.+|+..+++.
T Consensus 43 ~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 113 (287)
T d1pgua2 43 QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI 113 (287)
T ss_dssp CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred CCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeeccCCceEEEe-ecccceeeeccceee
Confidence 4699999999999665 6899999999999996532 234567888998877666654 566789999998887
Q ss_pred eeeeccCCCCeeEEEEecCCCEEEEEECCC-eEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005123 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (713)
Q Consensus 221 ~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg-~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwD 298 (713)
+..+... .. ..+++++++.+++++.|+ .|++|++...+....+. .+...|++++|++++++|++++.|+.|++||
T Consensus 114 ~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 190 (287)
T d1pgua2 114 IKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 190 (287)
T ss_dssp EEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccccccee
Confidence 7766433 33 345667788888888765 79999997766555544 3677899999999999999999999999999
Q ss_pred CCCCceEEE-EccCCCCeEEEEEcCC----------CCEEEEEECCCeEEEEECCC-CeeEEEeecCCCCeEEEEEeCCC
Q 005123 299 AKSGRELCS-FHGHKNMVLCVKWNQN----------GNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFH 366 (713)
Q Consensus 299 l~t~~~~~~-~~~h~~~I~si~fspd----------g~~Latgs~Dg~I~IwDl~t-~~~l~~~~~h~~~V~sl~fsp~~ 366 (713)
+.+++.+.. +..|...|++++|+++ +.+|++|+.|++|+|||+++ .+.+..+.+|...|++++|++ +
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~ 269 (287)
T d1pgua2 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-P 269 (287)
T ss_dssp TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-T
T ss_pred ecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-C
Confidence 998876543 5678999999999864 57899999999999999976 566777889999999999998 4
Q ss_pred CCEEEEEECCCcEEEEEc
Q 005123 367 EEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 367 ~~~lasgs~DG~I~Iwd~ 384 (713)
+ .|++++.|+.|++|++
T Consensus 270 ~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 270 S-TLVSSGADACIKRWNV 286 (287)
T ss_dssp T-EEEEEETTSCEEEEEE
T ss_pred C-EEEEEECCCeEEEEEE
Confidence 4 6899999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=6.7e-24 Score=222.50 Aligned_cols=245 Identities=10% Similarity=0.019 Sum_probs=193.4
Q ss_pred CCCCceEEEEEccCCCEEEEEECCC--cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~dg--~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~ 219 (713)
+|...|++++|+|||++|++++.+. .|++||.++++.. .+..|...|.+++|++|+++|++++.++.+++|++++++
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence 5889999999999999999877653 7999999887654 677899999999999999999999999999999999999
Q ss_pred eeeeeccCCCCeeEEEEecCCCEEEEEE----------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe
Q 005123 220 VKANKSAHKESVRDLSFCRTDLKFCSCS----------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (713)
Q Consensus 220 ~~~~~~~~~~~V~~l~fs~dg~~Las~s----------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs 289 (713)
....+..+...+.+++|++|+++|+.++ .++.+++||+.+++... +..+...+.+++|++++++|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE
T ss_pred eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe
Confidence 9888889999999999999999998654 34569999998876544 445777889999999999999999
Q ss_pred CCCcEEEEECCCCce-------EEEEccC------------------------------------CCCeEEEEEcCCCC-
Q 005123 290 KDSLVKLWDAKSGRE-------LCSFHGH------------------------------------KNMVLCVKWNQNGN- 325 (713)
Q Consensus 290 ~Dg~I~IwDl~t~~~-------~~~~~~h------------------------------------~~~I~si~fspdg~- 325 (713)
.|+.+.+||...... ...+..+ ......+...+++.
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence 999999998754321 1111100 11222333333222
Q ss_pred ------------EEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 326 ------------WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 326 ------------~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
++++++.++.|++||+.+++.. . |.+.|.+++|+| ++++|++++.||.|++||++++.....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~---~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-E---VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-E---EEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred EEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-E---ecCCcCEEEECC-CCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 2344556789999999987643 2 335589999999 8999999999999999999887765443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1.5e-23 Score=228.85 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=197.2
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-----ccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-----SAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~-----~~~~~~V~ 232 (713)
++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++..... ..|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 45777889999999999999999998774 6999999999999999999999999999988743322 24555566
Q ss_pred EEEEecCCCEEEE-EECCCeEEEEEcCCCeeEEEEccCCCc-----------eEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005123 233 DLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWD-----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 299 (713)
Q Consensus 233 ~l~fs~dg~~Las-~s~Dg~I~iwDl~~~~~~~~l~~h~~~-----------V~sl~~spdg~~L~sgs~-Dg~I~IwDl 299 (713)
+++|++||++|++ +..+++|++||..+++.+..+..+... ...+.+++++..++.... .+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 7778889998755 457899999999999888777655433 345555666665555443 344555555
Q ss_pred CCCceE-EEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC---------------------------------
Q 005123 300 KSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAM--------------------------------- 344 (713)
Q Consensus 300 ~t~~~~-~~~~~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~--------------------------------- 344 (713)
.+...+ .....+...+..+.|++++++++++.. +..+.+||..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 544322 223346677888999999988877653 334555554432
Q ss_pred ---------------------eeEEEeecCCCCeEEEEEeCCCCCEEEE-------EECCCcEEEEEcCCCCceEEEe--
Q 005123 345 ---------------------KELESFRGHRKDVTALAWHPFHEEYFVS-------GSLDGSIFHWLVGHETPQVEIH-- 394 (713)
Q Consensus 345 ---------------------~~l~~~~~h~~~V~sl~fsp~~~~~las-------gs~DG~I~Iwd~~~~~~~~~~~-- 394 (713)
+...++.+|...+..++|+| ++.+|++ ++.|++|+|||+.+.....++.
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~ 351 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 351 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc
Confidence 33445667778899999999 7777774 4567899999998877655542
Q ss_pred ------cccCCCeEEEEEcCCCcEE-EE------eCCcEEEEecCCCC
Q 005123 395 ------NVHDNTVWDLAWHPIGYLL-CS------NDHTTKFWCRNRPG 429 (713)
Q Consensus 395 ------~~h~~~V~~l~~spdg~~l-aS------~Dg~v~iWd~~~~~ 429 (713)
..|...|.+++|++||..+ +| .|+.|+|||.+..+
T Consensus 352 ~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 352 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp HHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred chhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 2456679999999999744 32 57889999976554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=1.5e-21 Score=199.15 Aligned_cols=262 Identities=13% Similarity=0.074 Sum_probs=206.7
Q ss_pred EEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec
Q 005123 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (713)
Q Consensus 160 atgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~ 238 (713)
++++.|++|.|||+++++.+.++... ..+..++|++||++|+ +++.++.|++||+.+++.+..+..+. .+..++|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence 45678899999999999999888754 5678999999999885 56678999999999999888876554 578999999
Q ss_pred CCCEEEE-EECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEccCCCCeE
Q 005123 239 TDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS-GGKDSLVKLWDAKSGRELCSFHGHKNMVL 316 (713)
Q Consensus 239 dg~~Las-~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~ 316 (713)
++..+++ +..++.+++||..+++....+.. ...+.+++|+++++.+++ +..++.+.+||..+.+.+..+.. ...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPK 161 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEE
T ss_pred ccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCce
Confidence 9987655 55678999999999988888774 457889999999987755 45678899999999988888774 45688
Q ss_pred EEEEcCCCCEEEEEECC-CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEE---CCCcEEEEEcCCCCceEE
Q 005123 317 CVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETPQVE 392 (713)
Q Consensus 317 si~fspdg~~Latgs~D-g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs---~DG~I~Iwd~~~~~~~~~ 392 (713)
++.++++++++++++.+ +.+.+|+....+....+. ....+..++|++ ++..+++++ .++.|++||+.+.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~ 239 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred EEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEE
Confidence 99999999988887765 677788888777766665 445678899999 555554433 346799999987764443
Q ss_pred EecccCCCeEEEEEcCCCcEE-EE--eCCcEEEEecCCCC
Q 005123 393 IHNVHDNTVWDLAWHPIGYLL-CS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~l-aS--~Dg~v~iWd~~~~~ 429 (713)
+. +...+++++|++||..| ++ .|++|+|||++...
T Consensus 240 ~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 240 IP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred Ec--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 33 34578999999999654 44 78999999986543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=1.9e-20 Score=190.91 Aligned_cols=243 Identities=12% Similarity=0.113 Sum_probs=195.7
Q ss_pred CceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~s-gs~DG~I~vwdl~~~~~~~ 222 (713)
..+..++|++||++|+ +++.++.|++||+.+++.+..+..+. .+..++|+++++++++ +..++.+.+|+..+++...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence 4578899999999885 55678999999999999999888765 5789999999987665 5567789999999998877
Q ss_pred eeccCCCCeeEEEEecCCCEEEE-EECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAK 300 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las-~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g~I~IwDl~ 300 (713)
.+.. ...+.++.|++++..++. +..++.+.+|+..+.+.+..+.. ...+.++.++++++.+++++.+ +.+.+|+..
T Consensus 111 ~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeeccccccccccccc
Confidence 7654 456788999999988765 45578899999999988887764 4568899999999988888765 567778877
Q ss_pred CCceEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCE-EEEEECC
Q 005123 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY-FVSGSLD 376 (713)
Q Consensus 301 t~~~~~~~~~h~~~I~si~fspdg~~Latgs~---Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~-lasgs~D 376 (713)
..+....+. ....+..++|+++++.+++++. ++.|++||+.+++.+..+.. ...+.+++|++ ++++ +++++.|
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~sp-dg~~l~va~~~~ 265 (301)
T d1l0qa2 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTP-DGKKVYVALSFC 265 (301)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECT-TSSEEEEEETTT
T ss_pred ceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeC-CCCEEEEEECCC
Confidence 766666555 4556888999999998876654 36899999999999888874 45689999999 5554 5788889
Q ss_pred CcEEEEEcCCCCceEEE
Q 005123 377 GSIFHWLVGHETPQVEI 393 (713)
Q Consensus 377 G~I~Iwd~~~~~~~~~~ 393 (713)
++|+|||+++++....+
T Consensus 266 ~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 266 NTVSVIDTATNTITATM 282 (301)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCeEEEEE
Confidence 99999999887655444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.9e-22 Score=221.21 Aligned_cols=280 Identities=10% Similarity=0.017 Sum_probs=188.5
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCCCce--EEEEe---ccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCC
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMILQ---AHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMN 218 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~--~~~l~---~h~~~V~sl~~spdg~~L-~sgs~DG~I~vwdl~~~ 218 (713)
..+..++|||||++|++++.|+.|++||+.+++. +..+. .|.+.+.+.+|++||++| +++..++.|+|||..++
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~ 141 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence 3699999999999999999999999999988763 33332 455667777888999986 57788999999999999
Q ss_pred ceeeeecc-----------CCCCeeEEEEecCCCEEE-EEECCCeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCCEE
Q 005123 219 NVKANKSA-----------HKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 219 ~~~~~~~~-----------~~~~V~~l~fs~dg~~La-s~s~Dg~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~~L 285 (713)
+.+..+.. .......+.+++++.+++ +...++.|.+||..+.+...... .+...+.+++|+++++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~ 221 (432)
T d1qksa2 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221 (432)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEE
Confidence 88776643 334566788999998765 45667899999998876544332 355678999999999988
Q ss_pred EEEeC-CCcEEEEECCCCceEEEEcc-----CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe-------eEEEee
Q 005123 286 VSGGK-DSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK-------ELESFR 351 (713)
Q Consensus 286 ~sgs~-Dg~I~IwDl~t~~~~~~~~~-----h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~-------~l~~~~ 351 (713)
++++. ++.|.++|.++++.+..+.. +........+...+...++.. .++.|.+|+..... ....+.
T Consensus 222 ~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~ 301 (432)
T d1qksa2 222 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 301 (432)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEE
Confidence 77765 45788999988877765532 223334444443444343332 36677777654321 111221
Q ss_pred cCCCC-------------------------eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEE
Q 005123 352 GHRKD-------------------------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (713)
Q Consensus 352 ~h~~~-------------------------V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (713)
.+... ..++++ + +++.|++++.|+.+++|++.+... +..|...|.+++|
T Consensus 302 ~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~----l~~~~~~v~~~~f 375 (432)
T d1qksa2 302 ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAG----ITEGQPRVVQGEF 375 (432)
T ss_dssp CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHT----CCSSCCEEEEEEE
T ss_pred cCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-E-echhhcccccCCceEecccccccc----cCCCCCcEEEeEE
Confidence 11111 111222 3 455566666666777776533221 1246678999999
Q ss_pred cCCCcEE-EE------eCCcEEEEecCCCCC
Q 005123 407 HPIGYLL-CS------NDHTTKFWCRNRPGD 430 (713)
Q Consensus 407 spdg~~l-aS------~Dg~v~iWd~~~~~~ 430 (713)
++||..+ +| .|+.|+|||....+.
T Consensus 376 S~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 376 NKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp CTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 9999655 33 368899999765543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=2.6e-21 Score=200.17 Aligned_cols=268 Identities=6% Similarity=-0.004 Sum_probs=203.9
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccCC-----
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHK----- 228 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~-sgs~DG~I~vwdl~~~~~~~~~~~~~----- 228 (713)
++|++++.|++|+|||+++.+.+..+..+ ...+.+++|++||++|+ +++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 58999999999999999999999988764 45678999999999875 56788999999999999887765543
Q ss_pred CCeeEEEEecCCCEEEEEE------------CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005123 229 ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s------------~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~I 296 (713)
..+..++|++++++++++. .+..+.+||..+++.+..+. ....+.+++|+++++++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 3456899999999988775 46789999999998888877 4556889999999999998864 5788
Q ss_pred EECCCCceEEEEccCCCCeEEEEEcC------------------------CCCEEEEEECCCeEEEEECCCCeeEE-Eee
Q 005123 297 WDAKSGRELCSFHGHKNMVLCVKWNQ------------------------NGNWVLTASKDQIIKLYDIRAMKELE-SFR 351 (713)
Q Consensus 297 wDl~t~~~~~~~~~h~~~I~si~fsp------------------------dg~~Latgs~Dg~I~IwDl~t~~~l~-~~~ 351 (713)
||..+++.+..+..+... ....+++ +...+..++.++.+.+||+.+++... .+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence 999999888776532211 1111111 11111222334569999999887654 455
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCCcEEEEecCCCC
Q 005123 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 352 ~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~~~~ 429 (713)
.+...+..+++++ ++.+++++ ++.|++||+.+......+. +...+.+++|++||.+|+. .|+.|+|||.+..+
T Consensus 238 ~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 6777888999998 67777665 5799999998877655543 4567899999999976643 89999999997655
Q ss_pred Cccc
Q 005123 430 DTAR 433 (713)
Q Consensus 430 ~~~~ 433 (713)
....
T Consensus 313 ~v~~ 316 (337)
T d1pbyb_ 313 KKGQ 316 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=9.6e-22 Score=214.43 Aligned_cols=249 Identities=10% Similarity=0.102 Sum_probs=176.0
Q ss_pred eCCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEE-----eccCCCEEEEEEccCCCEEEE-EeCCCcEEEE
Q 005123 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYW 213 (713)
Q Consensus 140 l~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l-----~~h~~~V~sl~~spdg~~L~s-gs~DG~I~vw 213 (713)
+..| ..+..++|||||++|++++.|+.|++||+.+++..... ..|...+.+++|++||++|++ +..++.+++|
T Consensus 58 l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~ 136 (426)
T d1hzua2 58 IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136 (426)
T ss_dssp EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence 3344 45899999999999999999999999999988754432 245666778888999998765 4578999999
Q ss_pred EcCCCceeeeeccCCCCe-----------eEEEEecCCCEEEEEEC-CCeEEEEEcCCCee-EEEEccCCCceEEEEEcC
Q 005123 214 QNNMNNVKANKSAHKESV-----------RDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V-----------~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~-~~~l~~h~~~V~sl~~sp 280 (713)
|..++.....+..+...+ ..+.++.++..++.... .+.|.+++..+... ......+...+..+.|++
T Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (426)
T d1hzua2 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216 (426)
T ss_dssp ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence 999998877766555444 44455555555444433 34455555544332 222334667788999999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCc------------------------------------------------------eE
Q 005123 281 TKSLLVSGGK-DSLVKLWDAKSGR------------------------------------------------------EL 305 (713)
Q Consensus 281 dg~~L~sgs~-Dg~I~IwDl~t~~------------------------------------------------------~~ 305 (713)
++++++++.. +..+.+||..+++ ..
T Consensus 217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~ 296 (426)
T d1hzua2 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 296 (426)
T ss_dssp TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence 9887777653 3345555554333 33
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEE-------EECCCeEEEEECCCCeeEEEe---------ecCCCCeEEEEEeCCCCCE
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLT-------ASKDQIIKLYDIRAMKELESF---------RGHRKDVTALAWHPFHEEY 369 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Lat-------gs~Dg~I~IwDl~t~~~l~~~---------~~h~~~V~sl~fsp~~~~~ 369 (713)
.++.+|...+..++|+||+++|++ ++.|++|+|||+++++.+.++ ..+...|..++||| ++++
T Consensus 297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~ 375 (426)
T d1hzua2 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDE 375 (426)
T ss_dssp EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSE
T ss_pred EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCE
Confidence 344556677889999999999995 445789999999998766544 24567799999999 5654
Q ss_pred E-EEE----ECCCcEEEEEcCCCCce
Q 005123 370 F-VSG----SLDGSIFHWLVGHETPQ 390 (713)
Q Consensus 370 l-asg----s~DG~I~Iwd~~~~~~~ 390 (713)
| +++ +.+|.|+|||.++.+..
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~~ 401 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKLK 401 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred EEEEEecCCCCCCeEEEEECCCCeEE
Confidence 4 544 35788999999877643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=5.5e-22 Score=206.18 Aligned_cols=283 Identities=10% Similarity=-0.010 Sum_probs=204.6
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec-cCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeccC
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKANKSAH 227 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~-h~~~V~sl~~spdg~~L~s-gs~DG~I~vwdl~~~~~~~~~~~~ 227 (713)
++|++++++|++++.|+.|.|||+++++.+.++.. +...+.+++|++||++|++ +..++.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 47899999999999999999999999999998874 5667889999999998754 557899999999999887765432
Q ss_pred C------CCeeEEEEecCCCEEEEEE------------CCCeEEEEEcCCCeeEEEEcc--CCCceEEEEEcCCCCEEEE
Q 005123 228 K------ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 228 ~------~~V~~l~fs~dg~~Las~s------------~Dg~I~iwDl~~~~~~~~l~~--h~~~V~sl~~spdg~~L~s 287 (713)
. ..+..++|++|++++++++ .+..+.+||..+++....+.. ....+..+.++.++.++++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 2 2467899999999988765 467899999887665433322 2345667777777776554
Q ss_pred EeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCC--------------------------CEEEEEECCCeEEEEEC
Q 005123 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG--------------------------NWVLTASKDQIIKLYDI 341 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg--------------------------~~Latgs~Dg~I~IwDl 341 (713)
+..+.+||+.+++.+..+..+. ....+.+++++ ..++++..+..+.+||+
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp ---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence 2568999999998888775332 22222333322 23334455667889999
Q ss_pred CCCeeEE-EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEE--eCC
Q 005123 342 RAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS--NDH 418 (713)
Q Consensus 342 ~t~~~l~-~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS--~Dg 418 (713)
.++.... .+..+...+..+.++++ +.+++... ++.|++||..+.+....+. +...+++++|++||.++++ .|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCceEEEEeecccceeEEEEEeCC-CCEEEEec-CCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 8877554 44567888999999984 44455544 3589999998776554444 3457999999999976654 899
Q ss_pred cEEEEecCCCCCccccccccCC
Q 005123 419 TTKFWCRNRPGDTARDKFNMGQ 440 (713)
Q Consensus 419 ~v~iWd~~~~~~~~~~~~~~~~ 440 (713)
.|+|||.+..+...+.+...+.
T Consensus 314 ~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 314 DLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp EEEEEETTTTEEEEEEECSSSC
T ss_pred cEEEEECccCCEEEEEECCCCC
Confidence 9999999766555444443333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1e-19 Score=188.00 Aligned_cols=244 Identities=9% Similarity=0.033 Sum_probs=187.5
Q ss_pred CCCCceEEEEEccCCCEEE-EEECCCcEEEEeCCCCceEEEEeccCC-----CEEEEEEccCCCEEEEEe----------
Q 005123 142 KNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDH-----AIRSMVWSHNDNWMVSGD---------- 205 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~La-tgs~dg~V~Iwd~~t~~~~~~l~~h~~-----~V~sl~~spdg~~L~sgs---------- 205 (713)
.+...+.+++|++||++|+ +++.++.|++||+.+++.+..+..+.. .+..++|++|+++++++.
T Consensus 31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T d1pbyb_ 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence 3455678899999999885 556789999999999999988876643 345789999999998775
Q ss_pred --CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC---
Q 005123 206 --DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--- 280 (713)
Q Consensus 206 --~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp--- 280 (713)
.+..+.+||..+++....+.. ...+.+++|++|++++++++. .+.+||..+++....+..+... ....+.+
T Consensus 111 ~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 186 (337)
T d1pbyb_ 111 EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVL 186 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCC
T ss_pred cccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcc
Confidence 467889999999988877654 556889999999999999865 4788999998887776532211 1111111
Q ss_pred ---------------------CCCEEEEEeCCCcEEEEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005123 281 ---------------------TKSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (713)
Q Consensus 281 ---------------------dg~~L~sgs~Dg~I~IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~Dg~I~I 338 (713)
+...+..++.++.+.+||+.+++.... +..+...+.++.+++++.+++++ ++.|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v 264 (337)
T d1pbyb_ 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES 264 (337)
T ss_dssp CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEE
Confidence 111111223345699999998876543 45567788899999999988766 478999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
||+++++.+..+. +...+.+++|++ ++++|++++.|++|+|||+++.+.+..+
T Consensus 265 ~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 265 FDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 9999999998886 567789999999 7889999999999999999887655444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=6.8e-19 Score=192.57 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=193.4
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eee---ccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~--~~~---~~~~~~V~ 232 (713)
++++.+.||+|.|||..+++++..+..+ ..+..++|+|||++|++++.|+.|++||+.+++.. ..+ ..+...+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 4578888999999999999999999877 46999999999999999999999999999887632 222 23445556
Q ss_pred EEEEecCCCEE-EEEECCCeEEEEEcCCCeeEEEEcc-----------CCCceEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 005123 233 DLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTG-----------HGWDVKSVDWHPTKSLLV-SGGKDSLVKLWDA 299 (713)
Q Consensus 233 ~l~fs~dg~~L-as~s~Dg~I~iwDl~~~~~~~~l~~-----------h~~~V~sl~~spdg~~L~-sgs~Dg~I~IwDl 299 (713)
+..|++||++| ++++.+++|+|||.++++.+..+.. +......+.+++++..++ +...++.|.+||.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 66778899986 6788899999999999988877654 334567889999988764 5566789999999
Q ss_pred CCCceEEEEc-cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeeEEEeec-----CCCCeEEEEEeCCCCCEEEE
Q 005123 300 KSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELESFRG-----HRKDVTALAWHPFHEEYFVS 372 (713)
Q Consensus 300 ~t~~~~~~~~-~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~~~l~~~~~-----h~~~V~sl~fsp~~~~~las 372 (713)
.+.+...... .+...+.+++|++||+++++++. ++.|.++|.++.+.+..+.. |........+.. .+...++
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~ 271 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT 271 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence 8877554332 35567899999999998887775 55899999999888776642 333444455543 4444444
Q ss_pred EE-CCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--EEEEeCCcEEEEecC
Q 005123 373 GS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LLCSNDHTTKFWCRN 426 (713)
Q Consensus 373 gs-~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~laS~Dg~v~iWd~~ 426 (713)
.. .|+.|.+|+..... ...|...|....+++++. .+++.|++.++|+..
T Consensus 272 ~~lg~~~v~~~~~~~~~-----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~ 323 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEG-----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 323 (432)
T ss_dssp EBSSSSEEEEEECCTTT-----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred cccCCceEEeccccccc-----ccccccEEEEEEEcCCCCeEEEEecCCccceeecc
Confidence 43 37789999875432 123555677777777653 334467777777654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.7e-18 Score=177.65 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=194.1
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEE--eccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeee---ccCCCCe
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANK---SAHKESV 231 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~---~~~~~~V 231 (713)
.+++++.|++|+|||+.+...+..+ ..|.+.|.+|+|+|||++|++++ .|+.|++|++........+ ......+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 3567778999999998765443333 36788999999999999997665 4899999999876433222 2345668
Q ss_pred eEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEE--EccCCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEE
Q 005123 232 RDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCS 307 (713)
Q Consensus 232 ~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~-Dg~I~IwDl~t~~~~~~ 307 (713)
..++|++|+++|++++. +++|.+|+......... ...+...+.++.++++++++++++. +..|.+|+..+......
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 88999999999998885 67899999876654433 3446677889999999998887775 45699999876543322
Q ss_pred ------EccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe----eEEEee------cCCCCeEEEEEeCCCCCEE
Q 005123 308 ------FHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK----ELESFR------GHRKDVTALAWHPFHEEYF 370 (713)
Q Consensus 308 ------~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~----~l~~~~------~h~~~V~sl~fsp~~~~~l 370 (713)
..........++|++++.+++... ..+...+|++.... ....+. ........+++++++..++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 122445678899999998887665 55678888865322 122221 1234567889999555566
Q ss_pred EEEECCCcEEEEEcCCCCceEEEec--ccCCCeEEEEEcCCCcEEE-E--eCCcEEEEecCCCC
Q 005123 371 VSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLC-S--NDHTTKFWCRNRPG 429 (713)
Q Consensus 371 asgs~DG~I~Iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~la-S--~Dg~v~iWd~~~~~ 429 (713)
+++..++.+.+|++........... .....+.+++|++||++|. + .++.|+||+++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCC
Confidence 6667788999999976655444332 2345678999999998654 4 57999999887644
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=1.6e-17 Score=175.50 Aligned_cols=282 Identities=9% Similarity=-0.034 Sum_probs=201.6
Q ss_pred CCCCCceEEEEEccCCCEEEEEE-----CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------
Q 005123 141 NKNRCSINRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD---------- 205 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs-----~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs---------- 205 (713)
..+...+.+++++||++.+++.. .++.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 46888999999999999988652 3467999999999999988766543 799999999999875
Q ss_pred CCCcEEEEEcCCCceeeeeccCCCCe-------eEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEEEEccCCCceEEE
Q 005123 206 DGGAIKYWQNNMNNVKANKSAHKESV-------RDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (713)
Q Consensus 206 ~DG~I~vwdl~~~~~~~~~~~~~~~V-------~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl 276 (713)
.++.|.|||+.+++.+..+..+.... ..+.|+++++.+++.. .++.+.+|+....+...... ...++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCY 170 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeE
Confidence 45789999999999887776554433 4578888988766554 45688999988766554443 46788
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEccC------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE-
Q 005123 277 DWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE- 348 (713)
Q Consensus 277 ~~spdg~~-L~sgs~Dg~I~IwDl~t~~~~~~~~~h------~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~- 348 (713)
.++++++. +++.+.|+++.+||..+++.......+ ......+.++.++. ++..+.++.+++|+..+.+...
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEE
Confidence 99998875 467889999999999988776654322 22234455665554 4556678899999988765432
Q ss_pred -EeecCCC----------CeEEEEEeCC---------CCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 349 -SFRGHRK----------DVTALAWHPF---------HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 349 -~~~~h~~----------~V~sl~fsp~---------~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
.+..+.. ....++++++ .+..+++...++.|.+||+.+++....+. +...+.+++|++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~sp 327 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQ 327 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEECC
Confidence 2222211 2233445542 22334556667789999998877555443 567799999999
Q ss_pred CCc--EEEE--eCCcEEEEecCCCCCc
Q 005123 409 IGY--LLCS--NDHTTKFWCRNRPGDT 431 (713)
Q Consensus 409 dg~--~laS--~Dg~v~iWd~~~~~~~ 431 (713)
||. ++++ .|++|+|||+...+..
T Consensus 328 DG~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 328 DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 996 3333 8999999999765543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=1.9e-18 Score=179.08 Aligned_cols=245 Identities=8% Similarity=-0.002 Sum_probs=179.5
Q ss_pred CCCCceEEEEEccCCCEEEEE-ECCCcEEEEeCCCCceEEEEeccC------CCEEEEEEccCCCEEEEEe---------
Q 005123 142 KNRCSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHD------HAIRSMVWSHNDNWMVSGD--------- 205 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latg-s~dg~V~Iwd~~t~~~~~~l~~h~------~~V~sl~~spdg~~L~sgs--------- 205 (713)
.|...+.+++|+|||++|+++ +.++.|++||+.+++.+..+.... ..+..++|++||++|++++
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~ 116 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence 355667899999999987654 578999999999999888776432 2356789999999988765
Q ss_pred ---CCCcEEEEEcCCCceeeeecc--CCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 206 ---DGGAIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 206 ---~DG~I~vwdl~~~~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
.++.+.+|+..+++....+.. ....+..+.++.++..+++ +..+.+||+.+++.+..+..+. ....+.+++
T Consensus 117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 192 (346)
T d1jmxb_ 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAP 192 (346)
T ss_dssp EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCC
T ss_pred eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCC-CccceEEec
Confidence 467889999888765544332 2345666777777765554 3468999999888877765332 222333333
Q ss_pred CC--------------------------CEEEEEeCCCcEEEEECCCCceEEE-EccCCCCeEEEEEcCCCCEEEEEECC
Q 005123 281 TK--------------------------SLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKD 333 (713)
Q Consensus 281 dg--------------------------~~L~sgs~Dg~I~IwDl~t~~~~~~-~~~h~~~I~si~fspdg~~Latgs~D 333 (713)
++ ..++++..+..+.+||+.++..... +..+...+.++.+++++.++++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (346)
T d1jmxb_ 193 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL- 271 (346)
T ss_dssp BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-
T ss_pred cccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-
Confidence 32 2233444556788999988776544 4557778899999998888877664
Q ss_pred CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEE
Q 005123 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (713)
Q Consensus 334 g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~ 393 (713)
+.|++||+.+++.+..+. +...+.+++|++ ++++|++++.|+.|+|||+++.+.+..+
T Consensus 272 ~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEE
Confidence 579999999999988876 456799999999 7888999999999999999887655443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=5.5e-17 Score=169.61 Aligned_cols=273 Identities=8% Similarity=-0.041 Sum_probs=185.7
Q ss_pred EEEEEccCCCEEEEEE-----CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEE
Q 005123 148 NRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKY 212 (713)
Q Consensus 148 ~~v~~spdg~~Latgs-----~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG~I~v 212 (713)
.-.+.+||++++++.. .++.|+|||..+++.+.++..+... .++|+|||++|++++ .|+.|++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3346689999988764 3567999999999999888765544 799999999888643 4789999
Q ss_pred EEcCCCceeeeeccCC-------CCeeEEEEecCCCEEEEEE--CCCeEEEEEcCCCeeEEEEccCCCc-------eEEE
Q 005123 213 WQNNMNNVKANKSAHK-------ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWD-------VKSV 276 (713)
Q Consensus 213 wdl~~~~~~~~~~~~~-------~~V~~l~fs~dg~~Las~s--~Dg~I~iwDl~~~~~~~~l~~h~~~-------V~sl 276 (713)
||+.+++.+..+..+. .....++|+++++++++++ .+..+.+||..+++.+..+...... ...+
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 9999998877654322 2345689999999988775 4578999999999888777644321 2233
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEE--EeecC
Q 005123 277 DWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGH 353 (713)
Q Consensus 277 ~~spdg~~L~sgs-~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~--~~~~h 353 (713)
.++++++.+++.. .++.+.+++..+... .+...+....++.++..++.++.++.+++||+..++... ....+
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred EEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence 4444444333322 222333333332211 233345667788888899999999999999998765422 22222
Q ss_pred C----------CCeEEEEEeCCCCCEEEEEECC----------CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--
Q 005123 354 R----------KDVTALAWHPFHEEYFVSGSLD----------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-- 411 (713)
Q Consensus 354 ~----------~~V~sl~fsp~~~~~lasgs~D----------G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-- 411 (713)
. .....+++++ ++..++..+.+ ..|.+||..+.+....+. +...+.+++|++||.
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPL 314 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCE
T ss_pred ccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeE
Confidence 1 1234578888 55555544333 369999998877554443 345689999999985
Q ss_pred EEEE--eCCcEEEEecCCCCC
Q 005123 412 LLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 412 ~laS--~Dg~v~iWd~~~~~~ 430 (713)
++++ .|+.|+|||....+.
T Consensus 315 l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp EEEEETTTTEEEEEETTTCCE
T ss_pred EEEEECCCCEEEEEECCCCCE
Confidence 4444 689999999976543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.7e-16 Score=162.32 Aligned_cols=245 Identities=9% Similarity=0.135 Sum_probs=173.0
Q ss_pred CCCCceEEEEEccCCCEEEEEEC-CCcEEEEeCCCCceEEEE---eccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC
Q 005123 142 KNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNN 216 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs~-dg~V~Iwd~~t~~~~~~l---~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vwdl~ 216 (713)
.|.+.|.+|+|+|||++|++++. |+.|++|++........+ ..+...+..++|++||++|++++. ++.|.+|+..
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence 47788999999999999976665 899999998765433332 234556788999999999998875 6789999887
Q ss_pred CCceeee--eccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeEEE------EccCCCceEEEEEcCCCCEEEE
Q 005123 217 MNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERS------LTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 217 ~~~~~~~--~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~~~------l~~h~~~V~sl~~spdg~~L~s 287 (713)
....... ...+...+.++.++++++++++++. +..|.+|+......... ..........++|++++.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~ 193 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 193 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence 6654333 3456677889999999998887775 56799999876533221 1224456789999999988776
Q ss_pred Ee-CCCcEEEEECCCCce----EEEEc------cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEE---eec
Q 005123 288 GG-KDSLVKLWDAKSGRE----LCSFH------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELES---FRG 352 (713)
Q Consensus 288 gs-~Dg~I~IwDl~t~~~----~~~~~------~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~---~~~ 352 (713)
.. ..+.+.+|+...... ...+. ........++++++++++++.. .++.+.+|++........ ...
T Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (333)
T d1ri6a_ 194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 273 (333)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC
Confidence 65 456678887654321 11221 1234567789999999877654 567899999876543322 233
Q ss_pred CCCCeEEEEEeCCCCCEEEEE-ECCCcEEEEEcCCC
Q 005123 353 HRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHE 387 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasg-s~DG~I~Iwd~~~~ 387 (713)
....+..++|+| ++++|+++ ..++.|+||+++..
T Consensus 274 ~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 274 TETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp CSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred CCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECC
Confidence 446678999999 66665555 55689999977543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=5.5e-15 Score=155.63 Aligned_cols=254 Identities=8% Similarity=-0.049 Sum_probs=180.5
Q ss_pred EEEEccCCCEEEEEEC----------CCcEEEEeCCCCceEEEEeccCCCE-------EEEEEccCCCEEEEEe--CCCc
Q 005123 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDHAI-------RSMVWSHNDNWMVSGD--DGGA 209 (713)
Q Consensus 149 ~v~~spdg~~Latgs~----------dg~V~Iwd~~t~~~~~~l~~h~~~V-------~sl~~spdg~~L~sgs--~DG~ 209 (713)
.++|+|||++|++++. ++.|.|||..+++.+..+..+.... ..+.|+++++.+++.. .++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 6899999999998753 5789999999999988887765544 4578888988776554 4568
Q ss_pred EEEEEcCCCceeeeeccCCCCeeEEEEecCCCE-EEEEECCCeEEEEEcCCCeeEEEEccC------CCceEEEEEcCCC
Q 005123 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGH------GWDVKSVDWHPTK 282 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~-Las~s~Dg~I~iwDl~~~~~~~~l~~h------~~~V~sl~~spdg 282 (713)
+.+|+....+..... ....++.++++++. +++.+.|+++.+||....+.......+ ......+.++.++
T Consensus 150 ~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T d2madh_ 150 VGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred eEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence 889988877655443 34668889998865 467888999999999887766554322 2223455566555
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE--EccC----------CCCeEEEEEcCCCCEEE----------EEECCCeEEEEE
Q 005123 283 SLLVSGGKDSLVKLWDAKSGRELCS--FHGH----------KNMVLCVKWNQNGNWVL----------TASKDQIIKLYD 340 (713)
Q Consensus 283 ~~L~sgs~Dg~I~IwDl~t~~~~~~--~~~h----------~~~I~si~fspdg~~La----------tgs~Dg~I~IwD 340 (713)
. ++..+.++.+++|+..+...... +... ......+++++++..++ +...++.|.+||
T Consensus 226 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d 304 (373)
T d2madh_ 226 R-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred e-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence 4 55566788999999887653322 1111 12233455666655444 455667899999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCC
Q 005123 341 IRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 341 l~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (713)
+.+++.+..+. +...+.+++|++++.. ++++++.|+.|+|||+.+++.+ ..+..+......|++..+
T Consensus 305 ~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~-~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 305 GLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD-QSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE-EEECCCCCCCcEEEEecC
Confidence 99999988776 6677999999994333 4578899999999999888754 444455666667766543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1.7e-15 Score=157.99 Aligned_cols=254 Identities=7% Similarity=0.005 Sum_probs=171.0
Q ss_pred EEEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccCC-------CEEEEEEccCCCEEEEEe--CCC
Q 005123 148 NRVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD--DGG 208 (713)
Q Consensus 148 ~~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~~-------~V~sl~~spdg~~L~sgs--~DG 208 (713)
..++|||||++|++++ .|+.|++||..+++.+..+..+.. ....++|+++++++++++ .+.
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence 3689999999888653 478999999999998888765432 234679999999988775 457
Q ss_pred cEEEEEcCCCceeeeeccCCCC-------eeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 209 AIKYWQNNMNNVKANKSAHKES-------VRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~~~-------V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
.+.+|+..+++....+...... ...+.+++|++.++... .++.+.+++..... ..+...+.+..+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 204 (355)
T d2bbkh_ 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQ 204 (355)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEET
T ss_pred eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccC
Confidence 8999999999887766543321 22234444444433322 22233333332211 12334456677888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEE--EccC----------CCCeEEEEEcCCCCEEEEEECC----------CeEEE
Q 005123 281 TKSLLVSGGKDSLVKLWDAKSGRELCS--FHGH----------KNMVLCVKWNQNGNWVLTASKD----------QIIKL 338 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t~~~~~~--~~~h----------~~~I~si~fspdg~~Latgs~D----------g~I~I 338 (713)
++..++.++.++.+++|++..++.... ...+ ......++++++++.+++...+ ..|.+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v 284 (355)
T d2bbkh_ 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284 (355)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence 888999999999999999987754321 1111 1223458899999988876544 36999
Q ss_pred EECCCCeeEEEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 339 YDIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 339 wDl~t~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
||..+++.+..+. +...+.+++|++++.. ++++++.|+.|+|||+++++.+..+ ..+...-..|.+..
T Consensus 285 ~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i-~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 285 LDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV-NQLGHGPQVITTAD 353 (355)
T ss_dssp EETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE-CCCCSSCCEEECCC
T ss_pred EeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE-eCcCCCccEEEeCC
Confidence 9999999888876 3456889999995443 4567778999999999888755444 33444344444433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=3.8e-14 Score=149.94 Aligned_cols=278 Identities=8% Similarity=-0.093 Sum_probs=183.0
Q ss_pred CCceEEEEEccCCCEEEEE---ECC--CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe----------CCC
Q 005123 144 RCSINRVLWTPTGRRLITG---SQS--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGG 208 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latg---s~d--g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs----------~DG 208 (713)
.+....++..++++..... ..+ ..|++||..+++.+..+..+... .++|++||++|++.+ .|+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence 3444445567777754332 333 44777899999999888876655 589999999998764 367
Q ss_pred cEEEEEcCCCceeeeeccCC-------CCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCeeEEEEccCCCceEEEEEcC
Q 005123 209 AIKYWQNNMNNVKANKSAHK-------ESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (713)
Q Consensus 209 ~I~vwdl~~~~~~~~~~~~~-------~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~sp 280 (713)
.|.+||..+++.+..+..+. .....++|++|+++|+++. .++.|.+||+.+.+.+..+..+...... ..
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~ 173 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PG 173 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---cC
Confidence 89999999998877664332 2234689999999998876 5799999999999988887655433211 11
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEE------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEe--ec
Q 005123 281 TKSLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF--RG 352 (713)
Q Consensus 281 dg~~L~sgs~Dg~I~IwDl~t~~~~~~~------~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~--~~ 352 (713)
....++..+.||++.+|++......... ..+...+..+.+.+++..+++. ++.++++|+...+..... ..
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 251 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCS
T ss_pred CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccc
Confidence 2456677778888888887755433222 2234455667777777655543 455777776654433221 11
Q ss_pred CC----------CCeEEEEEeCCCCCEEEEEECC--------CcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCc--E
Q 005123 353 HR----------KDVTALAWHPFHEEYFVSGSLD--------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--L 412 (713)
Q Consensus 353 h~----------~~V~sl~fsp~~~~~lasgs~D--------G~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~ 412 (713)
+. .....++++++.+.++++...+ ..|.+||..+.+....+. +...+.+++|++|++ +
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~l 329 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEE
T ss_pred ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEEE
Confidence 11 1123577888444444443322 258899998776443332 345788999999985 3
Q ss_pred EEE--eCCcEEEEecCCCCC
Q 005123 413 LCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 413 laS--~Dg~v~iWd~~~~~~ 430 (713)
+++ .|+.|+|||....+.
T Consensus 330 y~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 330 YANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEEETTTTEEEEEESSSCEE
T ss_pred EEEeCCCCeEEEEECCCCCE
Confidence 344 789999999866544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=7.5e-14 Score=147.64 Aligned_cols=240 Identities=7% Similarity=-0.043 Sum_probs=166.7
Q ss_pred EEEEccCCCEEEEEE----------CCCcEEEEeCCCCceEEEEeccCC-------CEEEEEEccCCCEEEEEe-CCCcE
Q 005123 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD-DGGAI 210 (713)
Q Consensus 149 ~v~~spdg~~Latgs----------~dg~V~Iwd~~t~~~~~~l~~h~~-------~V~sl~~spdg~~L~sgs-~DG~I 210 (713)
.++|++||++|++.+ .|+.|.+||..+++.+..+..+.. ....++|++||++|+++. .++.|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 488999999998765 367799999999999888865432 234689999999998776 57999
Q ss_pred EEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE------ccCCCceEEEEEcCCCCE
Q 005123 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL------TGHGWDVKSVDWHPTKSL 284 (713)
Q Consensus 211 ~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l------~~h~~~V~sl~~spdg~~ 284 (713)
.+||+.+++....+..+..... +......++..+.||++.+|++......... ..+...+..+.+.+++..
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence 9999999998887755443321 1223456667778888888887654433222 223445567778877765
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEc--cC----------CCCeEEEEEcCCCCEEEEEECC---------CeEEEEECCC
Q 005123 285 LVSGGKDSLVKLWDAKSGRELCSFH--GH----------KNMVLCVKWNQNGNWVLTASKD---------QIIKLYDIRA 343 (713)
Q Consensus 285 L~sgs~Dg~I~IwDl~t~~~~~~~~--~h----------~~~I~si~fspdg~~Latgs~D---------g~I~IwDl~t 343 (713)
+.+ .++.++++|+..++...... .. ......++++++++.+++...+ ..|++||..+
T Consensus 226 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 226 VWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 544 34667777776654433221 10 1123457889988887765432 2599999999
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcCCCCceEEEe
Q 005123 344 MKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIH 394 (713)
Q Consensus 344 ~~~l~~~~~h~~~V~sl~fsp~~~~-~lasgs~DG~I~Iwd~~~~~~~~~~~ 394 (713)
++.+..+. +...+.+++|++++.. +++++..|+.|+|||..+++.+..+.
T Consensus 304 ~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 304 GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 99888776 3456889999995444 45677788999999998877554443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.51 E-value=5e-13 Score=146.04 Aligned_cols=284 Identities=9% Similarity=0.050 Sum_probs=172.3
Q ss_pred eeCCCCCceEEEEEccCCCEEEEEEC---------CCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q 005123 139 SLNKNRCSINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (713)
Q Consensus 139 ~l~~H~~~V~~v~~spdg~~Latgs~---------dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~ 209 (713)
.+..|...|.++.|||||++|++++. ++.++|||+++++. ..+..+...+..+.|||||++||... ++.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-ccc
Confidence 45678888999999999999998753 56789999998764 45778899999999999999999865 678
Q ss_pred EEEEEcCCCceeeeeccC------------------CCCeeEEEEecCCCEEEEEECCCe-EEEEEc-------------
Q 005123 210 IKYWQNNMNNVKANKSAH------------------KESVRDLSFCRTDLKFCSCSDDTT-VKVWDF------------- 257 (713)
Q Consensus 210 I~vwdl~~~~~~~~~~~~------------------~~~V~~l~fs~dg~~Las~s~Dg~-I~iwDl------------- 257 (713)
+.+|+..+++........ ......+.|+|||++|+....|.+ |..|++
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 999999888765543221 233466889999999998765432 333322
Q ss_pred ----------------------CCCeeEEEE-----------ccCCCceEEEEEcCCCCEEEEEe-CCC-----cEEEEE
Q 005123 258 ----------------------ARCQEERSL-----------TGHGWDVKSVDWHPTKSLLVSGG-KDS-----LVKLWD 298 (713)
Q Consensus 258 ----------------------~~~~~~~~l-----------~~h~~~V~sl~~spdg~~L~sgs-~Dg-----~I~IwD 298 (713)
..+...... ......+..+.|..++++++... ..+ .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEec
Confidence 111110000 01122356788888777555432 222 233445
Q ss_pred CCCCceEEEEc------cCCCC-----eEEEEEcCCC--CEEEEEECCCeEEE--EECCCCeeEEEeecCCCCeEEEEEe
Q 005123 299 AKSGRELCSFH------GHKNM-----VLCVKWNQNG--NWVLTASKDQIIKL--YDIRAMKELESFRGHRKDVTALAWH 363 (713)
Q Consensus 299 l~t~~~~~~~~------~h~~~-----I~si~fspdg--~~Latgs~Dg~I~I--wDl~t~~~l~~~~~h~~~V~sl~fs 363 (713)
..+++...... ..... .....|+.++ .+++....||...| |+..... ...+..+...|..+. +
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~~-~ 371 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIE-A 371 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEEE-E
T ss_pred CCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCc-eeeeccCCeeEEEEE-E
Confidence 55555432211 11111 1123344443 34556667776544 5555443 444444556677763 3
Q ss_pred CCCCCEEEEEECCC----cEEEEEc--CCCCceEEEe----cccCCCeEEEEEcCCCcEEE---E--eCCcEEEEecCC
Q 005123 364 PFHEEYFVSGSLDG----SIFHWLV--GHETPQVEIH----NVHDNTVWDLAWHPIGYLLC---S--NDHTTKFWCRNR 427 (713)
Q Consensus 364 p~~~~~lasgs~DG----~I~Iwd~--~~~~~~~~~~----~~h~~~V~~l~~spdg~~la---S--~Dg~v~iWd~~~ 427 (713)
.+++.++++++.++ .-.||.+ .... ...++ ..|...+.+++|||||.+++ + .+-.+++|+...
T Consensus 372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~-~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~ 449 (470)
T d2bgra1 372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYT-KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (470)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEETTCTT-CEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred ECCCEEEEEEecCCCCcceEEEEEEECCCCC-ceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCC
Confidence 33455555555433 2245544 3333 23333 35777899999999998765 2 334588887654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.47 E-value=1.8e-12 Score=141.52 Aligned_cols=277 Identities=11% Similarity=0.047 Sum_probs=172.6
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc-----CCCEEEEEEccCCCEEEEEeC---------CCcEEEEE
Q 005123 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH-----DHAIRSMVWSHNDNWMVSGDD---------GGAIKYWQ 214 (713)
Q Consensus 149 ~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h-----~~~V~sl~~spdg~~L~sgs~---------DG~I~vwd 214 (713)
.+.|.+|++++. ..|+.|++||..+++....+..+ ...|.++.||||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 467899998765 35788999999999887766544 467999999999999998753 46789999
Q ss_pred cCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc------------------CCCceEEE
Q 005123 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG------------------HGWDVKSV 276 (713)
Q Consensus 215 l~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~------------------h~~~V~sl 276 (713)
+.+++.. .+..+...+..+.|+|||++||... ++.+++|++.+++....... ..+....+
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 176 (470)
T d2bgra1 99 LNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (470)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCccc-ccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence 9988754 4677888999999999999999865 66899999988776544321 12335668
Q ss_pred EEcCCCCEEEEEeCCCc-EEEEE-----------------------------------CCCCceEEEE-----------c
Q 005123 277 DWHPTKSLLVSGGKDSL-VKLWD-----------------------------------AKSGRELCSF-----------H 309 (713)
Q Consensus 277 ~~spdg~~L~sgs~Dg~-I~IwD-----------------------------------l~t~~~~~~~-----------~ 309 (713)
.|+|||++|++...|.+ +..|+ +.+++..... .
T Consensus 177 ~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
T d2bgra1 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (470)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccC
Confidence 89999999999865433 33332 2211110000 0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE-CCC-----eEEEEECCCCeeEEEee------cCCCC-----eEEEEEeCCCCC-EEE
Q 005123 310 GHKNMVLCVKWNQNGNWVLTAS-KDQ-----IIKLYDIRAMKELESFR------GHRKD-----VTALAWHPFHEE-YFV 371 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs-~Dg-----~I~IwDl~t~~~l~~~~------~h~~~-----V~sl~fsp~~~~-~la 371 (713)
.....+..+.|..++++++... ..+ .+..+|..+++...... ..... -....|..+++. +++
T Consensus 257 ~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (470)
T d2bgra1 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (470)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEE
Confidence 1122356788888887655432 222 24444556655433221 01111 112234443333 456
Q ss_pred EEECCCcEEEEEcCCCCceEEEecccCCCeEEE-EEcCCCcEEEE-eC----CcEEEEecCCCC
Q 005123 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCS-ND----HTTKFWCRNRPG 429 (713)
Q Consensus 372 sgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~laS-~D----g~v~iWd~~~~~ 429 (713)
....||...||.++........+..+...|..+ .++.+..++.+ .+ ..-.||.++..+
T Consensus 337 ~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g 400 (470)
T d2bgra1 337 ISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSD 400 (470)
T ss_dssp EECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred EeccCcCceeEEEeccCCceeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCC
Confidence 677788777766544444445554455667766 34444343443 22 233577776554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.46 E-value=2.6e-12 Score=138.31 Aligned_cols=254 Identities=9% Similarity=0.070 Sum_probs=177.3
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEec------------------------------cCCCEEEEEEccCCCEEEEEe-CC
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQA------------------------------HDHAIRSMVWSHNDNWMVSGD-DG 207 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~------------------------------h~~~V~sl~~spdg~~L~sgs-~D 207 (713)
+++++.+|.|+|||+.+++.++++.. |.-.+....+++||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 55777899999999999988887643 223344555678999997665 67
Q ss_pred CcEEEEEcCCCceeeeec-cCCCCeeEEEEecCCCE--EEEEECCC-----------------eEEEEEcCCCeeEEEEc
Q 005123 208 GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLK--FCSCSDDT-----------------TVKVWDFARCQEERSLT 267 (713)
Q Consensus 208 G~I~vwdl~~~~~~~~~~-~~~~~V~~l~fs~dg~~--Las~s~Dg-----------------~I~iwDl~~~~~~~~l~ 267 (713)
+.|.+||+++.+....+. .....+..++|++++++ ++..+.+. .+..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 899999999998877654 35678999999999984 44444332 23557888877776665
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCC-----------------------------------------cEEEEECCCCceEE
Q 005123 268 GHGWDVKSVDWHPTKSLLVSGGKDS-----------------------------------------LVKLWDAKSGRELC 306 (713)
Q Consensus 268 ~h~~~V~sl~~spdg~~L~sgs~Dg-----------------------------------------~I~IwDl~t~~~~~ 306 (713)
. ......+.|+++|+++++++.+. .+.|++..+.+.+.
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 3 34678999999999998887542 33444444444555
Q ss_pred EEccCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeeE--------EEee---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLT-ASKDQIIKLYDIRAMKEL--------ESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Lat-gs~Dg~I~IwDl~t~~~l--------~~~~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
.+...+ ....+.++|||+++++ +..+++|.|||+++.+.. .++. ...-.....+|++ +++.+.+..
T Consensus 253 ~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~ 330 (441)
T d1qnia2 253 YIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLF 330 (441)
T ss_dssp EECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEET
T ss_pred EEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEccc
Confidence 554433 3577999999998865 567899999998753321 1111 1112245568988 678888889
Q ss_pred CCCcEEEEEcCC---------CCceEEEe-----cccCCCeEEEEEcCCCcEEEE
Q 005123 375 LDGSIFHWLVGH---------ETPQVEIH-----NVHDNTVWDLAWHPIGYLLCS 415 (713)
Q Consensus 375 ~DG~I~Iwd~~~---------~~~~~~~~-----~~h~~~V~~l~~spdg~~laS 415 (713)
.|..|..|++.. ....+..+ .+|...+.+.+++|||++|++
T Consensus 331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s 385 (441)
T d1qnia2 331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385 (441)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence 999999999831 22233333 356666777789999999987
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.28 E-value=1.9e-09 Score=111.35 Aligned_cols=242 Identities=10% Similarity=0.082 Sum_probs=164.7
Q ss_pred CceEEEEEccCCCEEEEEEC-------CCcEEEEeCCCCceEEEEecc----CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAH----DHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~-------dg~V~Iwd~~t~~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
.....++|.++|+++++... +++|..||..++......... ...-..++|.++++.|++++..+.|..+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 34567899999997776432 467999998887665443322 2235689999999998888877788888
Q ss_pred EcCCCceeeeeccCC----CCeeEEEEecCCCEEEEEEC---------------CCeEEEEEcCCCeeEEEEccCCCceE
Q 005123 214 QNNMNNVKANKSAHK----ESVRDLSFCRTDLKFCSCSD---------------DTTVKVWDFARCQEERSLTGHGWDVK 274 (713)
Q Consensus 214 dl~~~~~~~~~~~~~----~~V~~l~fs~dg~~Las~s~---------------Dg~I~iwDl~~~~~~~~l~~h~~~V~ 274 (713)
+.+............ ...+++++.++|++.++-.. +|.|..++.. ++..... .....-+
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pN 175 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPN 175 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceee
Confidence 877654332222211 23678999999988776432 2345545433 3332222 2333457
Q ss_pred EEEEcCCCC-----EEEEEeCCCcEEEEECCCCceEE------EEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005123 275 SVDWHPTKS-----LLVSGGKDSLVKLWDAKSGRELC------SFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (713)
Q Consensus 275 sl~~spdg~-----~L~sgs~Dg~I~IwDl~t~~~~~------~~~~-h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~ 342 (713)
.|+|+++++ ++++-+..+.|..||+.....+. .+.. .......+++..+|+++++....+.|.+||.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 889988764 44455667889999876433222 1111 12345689999999988888888999999998
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 343 t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
.++.+..+.......++++|.++...++++.+.+|.|..+++....
T Consensus 256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 8877777777777899999998444577888888999888875443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=3.4e-10 Score=113.59 Aligned_cols=240 Identities=9% Similarity=-0.028 Sum_probs=159.2
Q ss_pred CCCceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 005123 143 NRCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~ 221 (713)
++..-..|+++++|+++++.. .++.|..++..+.........-......|+++++++++++...++.|++++..+...+
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence 344568999999999776654 4567777765544333222222334578899999987777666666666654444443
Q ss_pred eeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005123 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 222 ~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t 301 (713)
... .......++++.++++++++-..+..+.+++..................+|+++++++++++...++.|..+|.+.
T Consensus 92 ~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 92 LPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp CCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eee-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence 332 2345678999999998887766677788877655433222222334567899999999888888888999999876
Q ss_pred CceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEE
Q 005123 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (713)
Q Consensus 302 ~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~I 381 (713)
................|++.++|+++++...++.|..++.............-.....|++++ +++++++-..+++|+.
T Consensus 171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVK 249 (260)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEE
T ss_pred ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEE
Confidence 544333334456678999999999888887888898888764432222222335678999998 6778777666776765
Q ss_pred EEc
Q 005123 382 WLV 384 (713)
Q Consensus 382 wd~ 384 (713)
++.
T Consensus 250 i~~ 252 (260)
T d1rwia_ 250 LTS 252 (260)
T ss_dssp ECC
T ss_pred EeC
Confidence 554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=4.7e-10 Score=112.51 Aligned_cols=239 Identities=10% Similarity=-0.024 Sum_probs=156.9
Q ss_pred CEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE
Q 005123 188 AIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l 266 (713)
.-.+|++.++|+++++.. ..+.|..++...................++++++++++++...++.|++++..+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 357899999999776654 4567777765554433332233345678999999988777666667766665554443332
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCee
Q 005123 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (713)
Q Consensus 267 ~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~ 346 (713)
. ......+|+++++++++++-..+..+.+++...................++++++++++++...++.|..+|.+....
T Consensus 95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~ 173 (260)
T d1rwia_ 95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 173 (260)
T ss_dssp C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred e-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence 2 335678999999999887776677788887665433222222234567899999999888888888999999875544
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecC
Q 005123 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRN 426 (713)
Q Consensus 347 l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~ 426 (713)
.......-.....|++++ +++++++....+.|..++...... .......-.....|++++++.+++++-+.=+|+.++
T Consensus 174 ~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 174 VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 333334446678999998 678888888888888887654432 222222335678999999987776633333555554
Q ss_pred CCC
Q 005123 427 RPG 429 (713)
Q Consensus 427 ~~~ 429 (713)
..+
T Consensus 252 ~~~ 254 (260)
T d1rwia_ 252 SLE 254 (260)
T ss_dssp CCG
T ss_pred CCC
Confidence 443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.25 E-value=9.8e-11 Score=125.77 Aligned_cols=224 Identities=7% Similarity=-0.002 Sum_probs=153.0
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeecc------------------------------CCCCeeEEEEecCCCEEEEEE-CC
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKSA------------------------------HKESVRDLSFCRTDLKFCSCS-DD 249 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~~------------------------------~~~~V~~l~fs~dg~~Las~s-~D 249 (713)
+++++.+|.|+||++.+++.+..+.. |.-.+....+++||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 45778899999999998887766421 112233444568999987665 57
Q ss_pred CeEEEEEcCCCeeEEEEc-cCCCceEEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCCceEEEEc
Q 005123 250 TTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKS--LLVSGGKDS-----------------LVKLWDAKSGRELCSFH 309 (713)
Q Consensus 250 g~I~iwDl~~~~~~~~l~-~h~~~V~sl~~spdg~--~L~sgs~Dg-----------------~I~IwDl~t~~~~~~~~ 309 (713)
++|.+||+++.+....+. .+...+..++|+++++ ++++.+.+. .+..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 899999999998877665 3567899999999988 454444432 23558888877776665
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCC-----------------------------------------eEEEEECCCCeeEE
Q 005123 310 GHKNMVLCVKWNQNGNWVLTASKDQ-----------------------------------------IIKLYDIRAMKELE 348 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs~Dg-----------------------------------------~I~IwDl~t~~~l~ 348 (713)
. ......+.|++||+++++.+.+. .+.|++....+.+.
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 3 34578899999999999887542 33444444444455
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCce----------EEEecccCCCeEEEEEcCCCcEEEE--e
Q 005123 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ----------VEIHNVHDNTVWDLAWHPIGYLLCS--N 416 (713)
Q Consensus 349 ~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~----------~~~~~~h~~~V~~l~~spdg~~laS--~ 416 (713)
.+.... ....+.++|++..+++++..+++|.|||+++.... +.......-.....+|+++|....| .
T Consensus 253 ~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ 331 (441)
T d1qnia2 253 YIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI 331 (441)
T ss_dssp EECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred EEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence 555433 35779999954445667788999999998542211 1111111112345689999988777 8
Q ss_pred CCcEEEEecC
Q 005123 417 DHTTKFWCRN 426 (713)
Q Consensus 417 Dg~v~iWd~~ 426 (713)
|..|..|+++
T Consensus 332 ds~v~kw~~~ 341 (441)
T d1qnia2 332 DSQVCKWNIA 341 (441)
T ss_dssp TTEEEEEEHH
T ss_pred cceEEEeccc
Confidence 9999999984
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.6e-08 Score=100.43 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=148.6
Q ss_pred cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEE
Q 005123 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (713)
Q Consensus 167 ~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG---~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~L 243 (713)
.|+|.|....+. ..+..+...+.+.+|||||+.||....+. .+.+.+...+... .+..+...+....|+++++.|
T Consensus 20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence 577778764444 44455677889999999999998665433 3566666665544 344667888899999999998
Q ss_pred EEEECC-Ce--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe-CCC--cEEEEECCCCceEEEEccCCCCeEE
Q 005123 244 CSCSDD-TT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (713)
Q Consensus 244 as~s~D-g~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg--~I~IwDl~t~~~~~~~~~h~~~I~s 317 (713)
+..... +. +..+..... ................++.+++.++..+ .++ .|.++++..+... .+.........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred eEeeecCCccceeecccccc-cceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence 876643 22 233333332 2333333444555667777776555544 444 4666677665433 33445667788
Q ss_pred EEEcCCCCEEEEEECCC---eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCCceE
Q 005123 318 VKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETPQV 391 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg---~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~~~~ 391 (713)
..|++++++++..+.++ .|.+.|...+.. .+..+........|+| +++.|+..+. ...|++++++... .
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~-~- 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-K- 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC-E-
T ss_pred cccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCC-E-
Confidence 89999999988776544 455556555443 3333555678889999 5666654443 2357888886543 3
Q ss_pred EEecccCCCeEEEEEcCC
Q 005123 392 EIHNVHDNTVWDLAWHPI 409 (713)
Q Consensus 392 ~~~~~h~~~V~~l~~spd 409 (713)
..+....+.+...+|+|-
T Consensus 251 ~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEEeCCCCcEEeEEeCCC
Confidence 334445677888999983
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=7.3e-09 Score=102.90 Aligned_cols=216 Identities=11% Similarity=0.138 Sum_probs=143.3
Q ss_pred CCCceEEEEEccCCCEEEEEECCC---cEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeC-CCcEEEE--EcC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW--QNN 216 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg---~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~-DG~I~vw--dl~ 216 (713)
+...+...+|||||++||....+. .+.+.+..++.. ..+..+...+.+..|+++++.|+.... ++...++ ...
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence 445678899999999999776543 467777766554 455667888899999999998886553 3333333 222
Q ss_pred CCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCC--eEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCC-
Q 005123 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS- 292 (713)
Q Consensus 217 ~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg--~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg- 292 (713)
..... .............++.++..++..+ .++ .|.+.++..... ..+...........|+++++.++..+.++
T Consensus 116 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 116 SGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp TCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred cccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCC
Confidence 22222 2233444455566777776655544 444 466666665543 33344566778889999999888876654
Q ss_pred --cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeeEEEeecCCCCeEEEEEeC
Q 005123 293 --LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (713)
Q Consensus 293 --~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~D---g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp 364 (713)
.|.++|...+.. .+...........|||||++|+..+.. ..|+++|+..+.. ..+......+...+|||
T Consensus 194 ~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 194 QQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred ceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 355556555443 333455667889999999999865543 4689999986654 45555677888999998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.20 E-value=5.4e-09 Score=106.93 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=158.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeee
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKAN 223 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~--~~~~ 223 (713)
.+..+++++||+++++...+++|+.||.... ...+......+.+++|++||+++++...++.+.+|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 5889999999999999888999999986543 34455567889999999999999998888888888765432 2111
Q ss_pred e-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc----------CCCceEEEEEcCCCCEEEEEeCCC
Q 005123 224 K-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------HGWDVKSVDWHPTKSLLVSGGKDS 292 (713)
Q Consensus 224 ~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~----------h~~~V~sl~~spdg~~L~sgs~Dg 292 (713)
. .......+.+++.++++++++.+.++.|..+|...+.....+.. .......++++. +.++++.+.++
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~ 185 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM 185 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence 1 23445688999999999998888899999999887754433321 123456677763 34556666778
Q ss_pred cEEEEECCCCceEE--EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-eEEEeecCCCCeEEEEE---eCCC
Q 005123 293 LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAW---HPFH 366 (713)
Q Consensus 293 ~I~IwDl~t~~~~~--~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-~l~~~~~h~~~V~sl~f---sp~~ 366 (713)
.|+.+|+....... ...........++|+++|+++++...++.|..|+..... .+......-...++++| ++ +
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~-D 264 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEG-D 264 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTT-T
T ss_pred eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCC-C
Confidence 88888887543221 111123446679999999988888889999999876432 23333334466899999 44 4
Q ss_pred CCEEEEEECC
Q 005123 367 EEYFVSGSLD 376 (713)
Q Consensus 367 ~~~lasgs~D 376 (713)
++.|+.++..
T Consensus 265 ~~~Lyvtt~~ 274 (302)
T d2p4oa1 265 CTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECT
T ss_pred CCEEEEECCC
Confidence 5555554443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.19 E-value=3.6e-09 Score=111.54 Aligned_cols=270 Identities=11% Similarity=0.048 Sum_probs=160.2
Q ss_pred EEEEEEC--CCcEEEE--eCCCCceEE--EE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee--ccCC
Q 005123 158 RLITGSQ--SGEFTLW--NGQSFNFEM--IL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHK 228 (713)
Q Consensus 158 ~Latgs~--dg~V~Iw--d~~t~~~~~--~l-~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~--~~~~ 228 (713)
.|++|+. ++.|+++ |.+++++.. .. ......+.-|+|++++++|++++. +.+..|.+.....+... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3666754 4567554 455554422 22 223445677999999999998765 56777766543222211 1223
Q ss_pred CCeeEEEEecCCCEEEEEE---CCCeEEEEEcCCC-eeE--EE--------------EccCCCceEEEEEcCCCCEEEEE
Q 005123 229 ESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARC-QEE--RS--------------LTGHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 229 ~~V~~l~fs~dg~~Las~s---~Dg~I~iwDl~~~-~~~--~~--------------l~~h~~~V~sl~~spdg~~L~sg 288 (713)
.....+.++++++.+++.. ..++|..+.+... ... .. .......+.++.|+||+++|+++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 4456677788887543322 2355555543221 000 00 11122347899999999988888
Q ss_pred eC-CCcEEEEECCCCceEE---EE--ccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeE--EE---ee-----
Q 005123 289 GK-DSLVKLWDAKSGRELC---SF--HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKEL--ES---FR----- 351 (713)
Q Consensus 289 s~-Dg~I~IwDl~t~~~~~---~~--~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l--~~---~~----- 351 (713)
+. ...|.+|+......+. .+ .........++|+++++++++.. .+++|.+||+...+.. .. +.
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence 65 3468888765432221 11 12345788999999999887665 5789999998765422 11 11
Q ss_pred ---------cCCCCeEEEEEeCCCCCEEEEEE-CC-----CcEEEEEcCCCCceEEEec-----ccCCCeEEEEEcC-CC
Q 005123 352 ---------GHRKDVTALAWHPFHEEYFVSGS-LD-----GSIFHWLVGHETPQVEIHN-----VHDNTVWDLAWHP-IG 410 (713)
Q Consensus 352 ---------~h~~~V~sl~fsp~~~~~lasgs-~D-----G~I~Iwd~~~~~~~~~~~~-----~h~~~V~~l~~sp-dg 410 (713)
.+......+.++| ++++|+++. .+ +.|.+|++........... .......++++++ +|
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G 321 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred ccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence 1112356789999 677666553 22 2388888866544332221 1234567799997 77
Q ss_pred cEE-EE--eCCcEEEEecCCCC
Q 005123 411 YLL-CS--NDHTTKFWCRNRPG 429 (713)
Q Consensus 411 ~~l-aS--~Dg~v~iWd~~~~~ 429 (713)
.+| ++ .++.|.||+++...
T Consensus 322 ~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 322 EWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETTE
T ss_pred CEEEEEeCCCCeEEEEEEeCCc
Confidence 655 44 78999999986543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.18 E-value=3.2e-08 Score=99.87 Aligned_cols=235 Identities=10% Similarity=0.109 Sum_probs=165.6
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc------CCCEEEEEEccCCC-EEEEE-eCCCcEEEEEcCC
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDN-WMVSG-DDGGAIKYWQNNM 217 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h------~~~V~sl~~spdg~-~L~sg-s~DG~I~vwdl~~ 217 (713)
.-..|+++++++++++-..+..|++||.+ ++.+..+... ...-..+++..+.. ++++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 46899999999987777778899999965 5666665321 12345566655544 34333 334566666654
Q ss_pred Cceeeee-ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEE--ccCCCceEEEEEcCCCCEEEEEeCCCcE
Q 005123 218 NNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (713)
Q Consensus 218 ~~~~~~~-~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l--~~h~~~V~sl~~spdg~~L~sgs~Dg~I 294 (713)
++....+ .........+++..++.++++....+.+.++|.. ++.+..+ ..+......+++.++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 4444433 3344567889999999988888878888888854 4455554 3355678899999999888888888999
Q ss_pred EEEECCCCceEEEEc--cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeeEEEeecC--CCCeEEEEEeCCCCCE
Q 005123 295 KLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEY 369 (713)
Q Consensus 295 ~IwDl~t~~~~~~~~--~h~~~I~si~fspdg~~Latgs~-Dg~I~IwDl~t~~~l~~~~~h--~~~V~sl~fsp~~~~~ 369 (713)
++||.. ++.+.++. +.......|++.++|+++++-+. ++.|.+||. +++.+.++... ......|++.+ ++.+
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l 257 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSV 257 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEE
T ss_pred eeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC-CCcE
Confidence 999965 66677763 34456789999999997776543 457999985 58877766433 34678999998 5665
Q ss_pred EEEEECCCcEEEEEcCCC
Q 005123 370 FVSGSLDGSIFHWLVGHE 387 (713)
Q Consensus 370 lasgs~DG~I~Iwd~~~~ 387 (713)
+ +++.+.+|++|.....
T Consensus 258 ~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 V-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp E-EEETTTEEEEEECSCC
T ss_pred E-EEeCCCeEEEEEeeee
Confidence 4 4567899999987543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.16 E-value=4e-08 Score=101.28 Aligned_cols=229 Identities=8% Similarity=0.000 Sum_probs=155.1
Q ss_pred CCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCC
Q 005123 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNMN 218 (713)
Q Consensus 143 H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D----G~I~vwdl~~~ 218 (713)
....+..++|.++|+++++-..++.|+.||.++.+....+.........|+|++||+++++...+ +.|...+....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 44456789999999977777788999999988877776666667788999999999888765432 33445555554
Q ss_pred ceeeeecc--CCCCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-e
Q 005123 219 NVKANKSA--HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-G 289 (713)
Q Consensus 219 ~~~~~~~~--~~~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s 289 (713)
........ .....+++++.++|++.++... .+.|..++.... .+..+.......+.|+|+++++.|+++ +
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecc
Confidence 44333322 2345788999999987666432 233555554433 233332233456789999999866555 5
Q ss_pred CCCcEEEEECCCC-ceEEE-------EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeec------CCC
Q 005123 290 KDSLVKLWDAKSG-RELCS-------FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG------HRK 355 (713)
Q Consensus 290 ~Dg~I~IwDl~t~-~~~~~-------~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~------h~~ 355 (713)
..+.|..||++.. ..... ..........+++..+|++.++...++.|.+||- +++.+.++.. +..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence 6788999998642 22111 1112233567999999998888889999999995 6888877753 334
Q ss_pred CeEEEEEeCCCCCEEEEEE
Q 005123 356 DVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 356 ~V~sl~fsp~~~~~lasgs 374 (713)
.+++++|.+ +.+.+++.+
T Consensus 276 ~~~~~~~~~-~~~~~~~t~ 293 (319)
T d2dg1a1 276 RSTHPQFIP-GTNQLIICS 293 (319)
T ss_dssp BCCEEEECT-TSCEEEEEE
T ss_pred eeeeEEEeC-CCCEEEEEc
Confidence 678999988 444444443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.15 E-value=2.9e-08 Score=100.11 Aligned_cols=234 Identities=12% Similarity=0.137 Sum_probs=160.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc------CCCCeeEEEEecCCCE-EEEE-ECCCeEEEEEcCC
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA------HKESVRDLSFCRTDLK-FCSC-SDDTTVKVWDFAR 259 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~------~~~~V~~l~fs~dg~~-Las~-s~Dg~I~iwDl~~ 259 (713)
.-..|+++++++++++-..+..|++||.+ ++.+..+.. ....-..+++..+... +++. +.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 45789999999877776677889999865 444444321 1123445666555443 3333 33457777775 4
Q ss_pred CeeEEEEc-cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005123 260 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQII 336 (713)
Q Consensus 260 ~~~~~~l~-~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~--~~h~~~I~si~fspdg~~Latgs~Dg~I 336 (713)
++....+. ........+++.++++++++....+.+.++|.. ++.+.++ ..+......+++.++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 45555553 344667899999999988888877889888854 5666665 3355678889999999888888888999
Q ss_pred EEEECCCCeeEEEee--cCCCCeEEEEEeCCCCCEEEEEEC-CCcEEEEEcCCCCceEEEe-cccCCCeEEEEEcCCCcE
Q 005123 337 KLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYL 412 (713)
Q Consensus 337 ~IwDl~t~~~l~~~~--~h~~~V~sl~fsp~~~~~lasgs~-DG~I~Iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~ 412 (713)
++||.. ++.+.++. +.......|++.+ +++++++-+. ++.|.+|+. +++.+..+. .......+.|++.+||.+
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred eeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence 999976 66676663 2445678999999 6777776544 456999985 333222222 122346889999999977
Q ss_pred EEE-eCCcEEEEecCC
Q 005123 413 LCS-NDHTTKFWCRNR 427 (713)
Q Consensus 413 laS-~Dg~v~iWd~~~ 427 (713)
+++ .++.|++|.+..
T Consensus 258 ~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 258 VLASKDYRLYIYRYVQ 273 (279)
T ss_dssp EEEETTTEEEEEECSC
T ss_pred EEEeCCCeEEEEEeee
Confidence 665 789999998754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.15 E-value=7.3e-09 Score=109.15 Aligned_cols=247 Identities=11% Similarity=0.040 Sum_probs=151.1
Q ss_pred CCCCCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEe---CCCcEEEEEc
Q 005123 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGD---DGGAIKYWQN 215 (713)
Q Consensus 141 ~~H~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs---~DG~I~vwdl 215 (713)
......+.-|+|++++++|+++.. +.+..|.+.....+.... ........++++++++.+++.. ..+.|..+.+
T Consensus 36 ~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~ 114 (365)
T d1jofa_ 36 IPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred ccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence 344555677999999999988765 467777655432222221 1233455677888887543322 2355555543
Q ss_pred CCCc-------------e---ee-eeccCCCCeeEEEEecCCCEEEEEEC-CCeEEEEEcCCCeeE---EEE--ccCCCc
Q 005123 216 NMNN-------------V---KA-NKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEE---RSL--TGHGWD 272 (713)
Q Consensus 216 ~~~~-------------~---~~-~~~~~~~~V~~l~fs~dg~~Las~s~-Dg~I~iwDl~~~~~~---~~l--~~h~~~ 272 (713)
.... . .. ........+.++.|++|++++++++. ...|.+|++.....+ ..+ ......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g 194 (365)
T d1jofa_ 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence 2211 0 00 00112334789999999999888865 457888886543222 111 123567
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEE--EEc-----------------cCCCCeEEEEEcCCCCEEEEEEC
Q 005123 273 VKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELC--SFH-----------------GHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 273 V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~~~--~~~-----------------~h~~~I~si~fspdg~~Latgs~ 332 (713)
...++|+++++++++.. .+++|.+||+...+... ... ........+.+++||++|+++..
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 89999999999886665 47889999987654321 111 01123567899999999988753
Q ss_pred ------CCeEEEEECCCCeeEEE------eecCCCCeEEEEEeCCCCCEEEEE-ECCCcEEEEEcCCCC
Q 005123 333 ------DQIIKLYDIRAMKELES------FRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHET 388 (713)
Q Consensus 333 ------Dg~I~IwDl~t~~~l~~------~~~h~~~V~sl~fsp~~~~~lasg-s~DG~I~Iwd~~~~~ 388 (713)
...|.+|++.....+.. ..........+++++.++++|+++ ..++.|.||+++...
T Consensus 275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 22477787764322211 112334567899997556655554 677899999986543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.09 E-value=2.2e-08 Score=102.21 Aligned_cols=222 Identities=8% Similarity=0.025 Sum_probs=151.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCe--eEEE
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERS 265 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~--~~~~ 265 (713)
.+..+++++||+++++...+++|..|+.+.. ...+......+.+++|++|++++++...++.+.+|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 5889999999999999888998888875543 23344566789999999999999998888888888875432 2211
Q ss_pred E-ccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc----------CCCCeEEEEEcCCCCEEEEEECCC
Q 005123 266 L-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG----------HKNMVLCVKWNQNGNWVLTASKDQ 334 (713)
Q Consensus 266 l-~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~----------h~~~I~si~fspdg~~Latgs~Dg 334 (713)
. .......+.+++.++++++++.+.++.|..+|..++........ .......++++. +.++++.+.++
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~ 185 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM 185 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence 1 22456688999999999888888889999999887654332211 122356666653 33455666788
Q ss_pred eEEEEECCCCeeEEEe--ecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEE---cCC
Q 005123 335 IIKLYDIRAMKELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW---HPI 409 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~~--~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~---spd 409 (713)
.|+.+|+......... .........++|++ +++++++...++.|..++...+...+......-...++++| ++|
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D 264 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGD 264 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred eEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCC
Confidence 8999988754322111 11233456799998 77888888889999888764332222222223356889999 556
Q ss_pred CcEE
Q 005123 410 GYLL 413 (713)
Q Consensus 410 g~~l 413 (713)
++.|
T Consensus 265 ~~~L 268 (302)
T d2p4oa1 265 CTAI 268 (302)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.01 E-value=1.9e-07 Score=95.93 Aligned_cols=241 Identities=10% Similarity=0.090 Sum_probs=154.7
Q ss_pred CCCEEEEEEccCCCEEEEEeC-------CCcEEEEEcCCCceeeeecc----CCCCeeEEEEecCCCEEEEEECCCeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDD-------GGAIKYWQNNMNNVKANKSA----HKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~-------DG~I~vwdl~~~~~~~~~~~----~~~~V~~l~fs~dg~~Las~s~Dg~I~i 254 (713)
-.....++|.++|+++++... +|.|..||..++........ ....-..+.|.++++.|+++...+.|..
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence 344667899999998776433 46788888887765443322 1223568999999998888888888999
Q ss_pred EEcCCCeeEEEEccCC----CceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceEEEEccCCCCe
Q 005123 255 WDFARCQEERSLTGHG----WDVKSVDWHPTKSLLVSGGK---------------DSLVKLWDAKSGRELCSFHGHKNMV 315 (713)
Q Consensus 255 wDl~~~~~~~~l~~h~----~~V~sl~~spdg~~L~sgs~---------------Dg~I~IwDl~t~~~~~~~~~h~~~I 315 (713)
+|.............. ...+.++++++|++.++-.. +|.|..++.+ ++..... ..-..-
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCccee
Confidence 9987654332211111 23678999999987776432 2345555443 3333222 223345
Q ss_pred EEEEEcCCCC----EE-EEEECCCeEEEEECCCCeeEE------Eeec-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 316 LCVKWNQNGN----WV-LTASKDQIIKLYDIRAMKELE------SFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 316 ~si~fspdg~----~L-atgs~Dg~I~IwDl~t~~~l~------~~~~-h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
+.++|+++++ +| ++-+..+.|+.||+.....+. .+.. .......+++.. +++++++....+.|.+||
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEEEe
Confidence 7889998764 44 445677889999876432221 2221 122356899988 788888888889999999
Q ss_pred cCCCCceEEEecccCCCeEEEEEcCCCc-EEEE--eCCcEEEEecCCCCC
Q 005123 384 VGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCS--NDHTTKFWCRNRPGD 430 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~-~laS--~Dg~v~iWd~~~~~~ 430 (713)
-+.+.....+ .......++++|.+|+. +.++ .++.|...++...+.
T Consensus 254 p~~g~~~~~i-~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 254 PDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp TTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred CCCCEEEEEE-ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence 7655543333 33456789999999885 3344 556676666666553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=4.4e-08 Score=106.52 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=169.1
Q ss_pred EEccCCCEEEEEECCCcEEEEeCCCCceEEEEecc---CCCEEEEEEccCCCEEEEEe---------CCCcEEEEEcCCC
Q 005123 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGD---------DGGAIKYWQNNMN 218 (713)
Q Consensus 151 ~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h---~~~V~sl~~spdg~~L~sgs---------~DG~I~vwdl~~~ 218 (713)
.|.+++.++. -..+|.|.+||..+++....+... ...+....||+|+++|+... ..+.+.|+|+.++
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 4777776554 356788999999988765555443 23577888999999988764 3577899999988
Q ss_pred ceeeee--ccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-CCC-----------------ceEEEEE
Q 005123 219 NVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGW-----------------DVKSVDW 278 (713)
Q Consensus 219 ~~~~~~--~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~-h~~-----------------~V~sl~~ 278 (713)
...... ......+....|||||+.||-.. ++.|.+.+..++..++.... ... .-..+.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 754432 22344566789999999998876 56789988877665544432 111 1247889
Q ss_pred cCCCCEEEEEeCC-C---------------------------------cEEEEECCCCceEEEEc------cCCCCeEEE
Q 005123 279 HPTKSLLVSGGKD-S---------------------------------LVKLWDAKSGRELCSFH------GHKNMVLCV 318 (713)
Q Consensus 279 spdg~~L~sgs~D-g---------------------------------~I~IwDl~t~~~~~~~~------~h~~~I~si 318 (713)
+|||++||....| . .+.|+|+.++....... .....+..+
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence 9999999987532 2 24455554433221111 112246788
Q ss_pred EEcCCCCEEEEEEC-C---CeEEEEECCCCeeEEEeecC-CCCe----EEEEEeCCCCCEEE-EEE-CCC--cEEEEEcC
Q 005123 319 KWNQNGNWVLTASK-D---QIIKLYDIRAMKELESFRGH-RKDV----TALAWHPFHEEYFV-SGS-LDG--SIFHWLVG 385 (713)
Q Consensus 319 ~fspdg~~Latgs~-D---g~I~IwDl~t~~~l~~~~~h-~~~V----~sl~fsp~~~~~la-sgs-~DG--~I~Iwd~~ 385 (713)
.|++++++++.... + ..|.++|..++++...+... ...| ....|++++..+++ ..+ .+| .++..++.
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEec
Confidence 99999886665432 2 26888999998876555432 2222 34578885544432 223 333 34433321
Q ss_pred -----CCCceEEEecccCCCeEEE-EEcCCCcEE--EE-eC--CcEEEEecCCCCCccc
Q 005123 386 -----HETPQVEIHNVHDNTVWDL-AWHPIGYLL--CS-ND--HTTKFWCRNRPGDTAR 433 (713)
Q Consensus 386 -----~~~~~~~~~~~h~~~V~~l-~~spdg~~l--aS-~D--g~v~iWd~~~~~~~~~ 433 (713)
........+....-.|..+ +|+.++..| .+ .+ +.-.||.++..+...+
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~ 399 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR 399 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC
T ss_pred cccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc
Confidence 1122222333334456665 688877444 33 32 3445777776655443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.96 E-value=8.5e-07 Score=91.04 Aligned_cols=237 Identities=8% Similarity=0.065 Sum_probs=152.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC----CeEEEEEcCCCee
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQE 262 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D----g~I~iwDl~~~~~ 262 (713)
..+..++|.++|+++++-..++.|..|+.++++....+.........|++++|++++++...+ +.|...|......
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 345689999999977777788999999988877666665666778999999999877765432 3455555555444
Q ss_pred EEEEcc--CCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE-ECC
Q 005123 263 ERSLTG--HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKD 333 (713)
Q Consensus 263 ~~~l~~--h~~~V~sl~~spdg~~L~sgs~------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latg-s~D 333 (713)
...... .....+.+++.++|++.++... .+.+..++... +.+..+...-...+.|+|++|++.|+++ +..
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccC
Confidence 333322 2345788999999986665432 12355555543 3333333233456789999999877555 567
Q ss_pred CeEEEEECCCC-eeEE-------EeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec-----ccCCC
Q 005123 334 QIIKLYDIRAM-KELE-------SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-----VHDNT 400 (713)
Q Consensus 334 g~I~IwDl~t~-~~l~-------~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~-----~h~~~ 400 (713)
+.|+.||++.. .... ...........+++.. +++++++...++.|.+||- +++.+.++.. .+...
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~ 276 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 276 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence 89999998632 1111 1111122356899988 7889999889999999995 4543333321 23346
Q ss_pred eEEEEEcCCCcEE--EEe----CCcEEEEecC
Q 005123 401 VWDLAWHPIGYLL--CSN----DHTTKFWCRN 426 (713)
Q Consensus 401 V~~l~~spdg~~l--aS~----Dg~v~iWd~~ 426 (713)
+++++|.+++..+ ++. ++.-.||.++
T Consensus 277 ~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 277 STHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 308 (319)
T ss_dssp CCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred eeeEEEeCCCCEEEEEcCCCCcCCceeEEEEe
Confidence 7899998876333 332 3445555553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.90 E-value=1.9e-06 Score=87.35 Aligned_cols=222 Identities=9% Similarity=0.009 Sum_probs=154.0
Q ss_pred EEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 148 NRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 148 ~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
.+..|++....|+-.. ..+.|..||.++++.. .+. ....+.++++..+++++++ +.+ -|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 4677887655555444 6788999999887643 332 3567899999988876665 444 588999998876543321
Q ss_pred ----CCCCeeEEEEecCCCEEEEEEC----CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 005123 227 ----HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLW 297 (713)
Q Consensus 227 ----~~~~V~~l~fs~dg~~Las~s~----Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~Iw 297 (713)
....++++.+.++|++.++... .+.-.+|.+.+++...... .....+.++|+++++.++.+ +..+.|..|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEe
Confidence 2235889999999987776543 2345667766665544443 33456889999999866555 456788888
Q ss_pred ECCCC------ce--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEe-CCCCC
Q 005123 298 DAKSG------RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PFHEE 368 (713)
Q Consensus 298 Dl~t~------~~--~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fs-p~~~~ 368 (713)
++... +. ...+.........+++..+|++.++....+.|..||- +++.+..+..-...+++++|- ++...
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 254 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCE
Confidence 87531 11 1122334556888999999998888878899999995 588888888777789999996 33345
Q ss_pred EEEEEEC
Q 005123 369 YFVSGSL 375 (713)
Q Consensus 369 ~lasgs~ 375 (713)
+++|...
T Consensus 255 LyvTta~ 261 (295)
T d2ghsa1 255 LLVTSAR 261 (295)
T ss_dssp EEEEEBC
T ss_pred EEEEECC
Confidence 6666554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.3e-07 Score=102.66 Aligned_cols=280 Identities=10% Similarity=0.058 Sum_probs=165.0
Q ss_pred ceEEEEEccCCCEEEEEE---------CCCcEEEEeCCCCceEEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005123 146 SINRVLWTPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs---------~dg~V~Iwd~~t~~~~~~l~--~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd 214 (713)
.+....||+|+++|+... ..+.+.|||+.+++...... .....+....|||||+.||... ++.|.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 456778999999988764 35778999999887654432 2244566789999999998776 56788888
Q ss_pred cCCCceeeeeccCC-CC-----------------eeEEEEecCCCEEEEEECC-C-------------------------
Q 005123 215 NNMNNVKANKSAHK-ES-----------------VRDLSFCRTDLKFCSCSDD-T------------------------- 250 (713)
Q Consensus 215 l~~~~~~~~~~~~~-~~-----------------V~~l~fs~dg~~Las~s~D-g------------------------- 250 (713)
..++..+....... .. -.++.|||||++||....| .
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 77765544332211 11 2467899999999876422 2
Q ss_pred --------eEEEEEcCCCeeEEEEc------cCCCceEEEEEcCCCCEEEEEeC-C---CcEEEEECCCCceEEEEcc-C
Q 005123 251 --------TVKVWDFARCQEERSLT------GHGWDVKSVDWHPTKSLLVSGGK-D---SLVKLWDAKSGRELCSFHG-H 311 (713)
Q Consensus 251 --------~I~iwDl~~~~~~~~l~------~h~~~V~sl~~spdg~~L~sgs~-D---g~I~IwDl~t~~~~~~~~~-h 311 (713)
.+.|+|++++....... .....+..+.|++++++++.... + ..|.++|..++++...+.. .
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~ 300 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence 24455554433221111 12224678999998876655432 2 2488899999887655432 2
Q ss_pred CCCe----EEEEEcCCCCEEEE--EE-CCC--eEEEEECC------CCeeEEEeecCCCCeEEE-EEeCCCCCEEEEEEC
Q 005123 312 KNMV----LCVKWNQNGNWVLT--AS-KDQ--IIKLYDIR------AMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSL 375 (713)
Q Consensus 312 ~~~I----~si~fspdg~~Lat--gs-~Dg--~I~IwDl~------t~~~l~~~~~h~~~V~sl-~fsp~~~~~lasgs~ 375 (713)
..+| ....|++||+.++. .+ .+| .++.+++. .++.+..+....-.|..+ .|+.+++.+++++..
T Consensus 301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence 2332 34678999875432 22 232 34444432 233333343334456665 588755555566655
Q ss_pred CC--cEEEEEcCCCCc-eEEEe---cccCCCeEEEEEcCCCcEEEE-----eCCcEEEEecC
Q 005123 376 DG--SIFHWLVGHETP-QVEIH---NVHDNTVWDLAWHPIGYLLCS-----NDHTTKFWCRN 426 (713)
Q Consensus 376 DG--~I~Iwd~~~~~~-~~~~~---~~h~~~V~~l~~spdg~~laS-----~Dg~v~iWd~~ 426 (713)
++ .-.+|.++.... ...++ ........++.||+++.+++- .--.+.|++..
T Consensus 381 ~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~ 442 (465)
T d1xfda1 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTT 442 (465)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETT
T ss_pred CCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECC
Confidence 43 334555532211 11111 223456779999999977652 23456666643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.66 E-value=1.2e-06 Score=86.44 Aligned_cols=226 Identities=10% Similarity=-0.040 Sum_probs=127.8
Q ss_pred EEccC--CCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCC-----cEEEEEcCCCceee
Q 005123 151 LWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGG-----AIKYWQNNMNNVKA 222 (713)
Q Consensus 151 ~~spd--g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG-----~I~vwdl~~~~~~~ 222 (713)
.++|| |++||..+ ++.|+++|+.+++.. .+..+.+.+...+|||||+.||... .++ .|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99888765 567999999988754 5677788899999999999998553 222 37777777776554
Q ss_pred eecc------CCCCeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC
Q 005123 223 NKSA------HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 223 ~~~~------~~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
.... .......+.|+++++.|+..... ..+.+++......... .......+.+...+..++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCS
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecc
Confidence 3221 12345678899999998876432 2355556555443222 2222233333333333333222
Q ss_pred CC-----------cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-C--CCeEEEEECCCCeeEEEeecCCCC
Q 005123 291 DS-----------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-K--DQIIKLYDIRAMKELESFRGHRKD 356 (713)
Q Consensus 291 Dg-----------~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~--Dg~I~IwDl~t~~~l~~~~~h~~~ 356 (713)
+. ...++........ .............++.+ .++... . ...|.++|+.+.+...........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~ 236 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 236 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred ccceeeeeccCCcceeeeecccccee-eccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCCcc
Confidence 11 1122222222222 22223344555566554 333333 2 336888898866543322222223
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcCCCC
Q 005123 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (713)
Q Consensus 357 V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~ 388 (713)
...|+++ ++.|+. ..++.|+++|+.+++
T Consensus 237 --~~~~SpD-G~~I~f-~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 237 --PRHLNTD-GRRILF-SKGGSIYIFNPDTEK 264 (281)
T ss_dssp --EEEEEES-SSCEEE-EETTEEEEECTTTCC
T ss_pred --cccCcCC-CCEEEE-EeCCEEEEEECCCCC
Confidence 3468894 555544 346789999987665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=0.00014 Score=71.90 Aligned_cols=248 Identities=7% Similarity=-0.015 Sum_probs=157.7
Q ss_pred CEEEEEECCCcEEEEeCCCCc-----eEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCC
Q 005123 157 RRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKES 230 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~-----~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~ 230 (713)
.+|+.+.. +.|+-.+++... ....+..+...+..|+|...++.|+.++ .++.|+..+++.......+......
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~ 80 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence 34444443 356666654332 2233444555688899988888777664 5577888888876655555444467
Q ss_pred eeEEEEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEE
Q 005123 231 VRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELC 306 (713)
Q Consensus 231 V~~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D-g--~I~IwDl~t~~~~~ 306 (713)
+.+|++..-+..|+.+ ...+.|.+.++........+.........|+++|...+|+..... + .|.-.+++......
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~ 160 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence 8899998766666655 456799999987655444444445678999999977777655432 2 35445666444333
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 307 SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 307 ~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
...........|++...++.|+.+. ..+.|...|++.......+.+.. ...+|++. ++.++++-..++.|...|..
T Consensus 161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECC
Confidence 3443445678999988777776654 57789999998555444444333 34678875 45566666677888888887
Q ss_pred CCCceEEEecccCCCeEEEEEcC
Q 005123 386 HETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
++.....+..........|++.+
T Consensus 238 ~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 238 ISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCccceEECCCCCCCcceEEEeC
Confidence 66654444433334455555543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.51 E-value=9.4e-05 Score=74.42 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=140.2
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc-
Q 005123 191 SMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (713)
Q Consensus 191 sl~~spdg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~- 268 (713)
+..|.+.+..|+-.+ ..+.|..||.++++.... .....+.++++..++.++++ +.+ .|.++|..+++.......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE--ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 456776555555443 568899999888865432 33567889999988876665 444 599999988876544321
Q ss_pred ---CCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 005123 269 ---HGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYD 340 (713)
Q Consensus 269 ---h~~~V~sl~~spdg~~L~sgs~----Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latg-s~Dg~I~IwD 340 (713)
....++++.+.++|++.++... .+.-.+|.+..++....+. .-..-+.++|+++++.|+.+ +..+.|+.|+
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEee
Confidence 2235889999999987666543 2345677766665544443 33456789999999876655 4577899998
Q ss_pred CCCC------ee--EEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcC
Q 005123 341 IRAM------KE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (713)
Q Consensus 341 l~t~------~~--l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (713)
+... +. ...+.........+++.. +++++++.-..+.|..||- +++ .+..+..-...+++++|-.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~G~-~~~~i~lP~~~~T~~~FGG 249 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGN-HIARYEVPGKQTTCPAFIG 249 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCC-EEEEEECSCSBEEEEEEES
T ss_pred ecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC-CCc-EeeEecCCCCceEEEEEeC
Confidence 7521 11 122223345678899988 7888888778889999995 444 3444444456799999963
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=1.5e-05 Score=78.26 Aligned_cols=225 Identities=6% Similarity=0.003 Sum_probs=126.2
Q ss_pred EEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEEC-C-----CeEEEEEcCCCeeEE
Q 005123 193 VWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEER 264 (713)
Q Consensus 193 ~~spd--g~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~-D-----g~I~iwDl~~~~~~~ 264 (713)
..+|| |+.++..+ ++.|.+.|+.+++... +..+...+...+|||||+.|+.... + ..|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99888765 4678888999887654 4566778899999999999886543 2 247788887776543
Q ss_pred EEc------cCCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 005123 265 SLT------GHGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 265 ~l~------~h~~~V~sl~~spdg~~L~sgs~D------g~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~ 332 (713)
... ........+.|+++++.|+..... ..+.+++...+..... .......+.+..++.+++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCS
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecc
Confidence 321 122345788999999998876442 2355556554443222 2222233333333333333222
Q ss_pred CC-----------eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcCCCCceEEEecccCC
Q 005123 333 DQ-----------IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDN 399 (713)
Q Consensus 333 Dg-----------~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~Iwd~~~~~~~~~~~~~h~~ 399 (713)
+. ...++.......... ...........++. ..++.....++ .|+++|++.... ..+.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~-~~lt~~~~- 234 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDL-RKHTSFTD- 234 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSC-EECCCCCS-
T ss_pred ccceeeeeccCCcceeeeeccccceeec-cCCccccceeeeec--cccceecccccccceEEEeCCCCce-EEeecCCC-
Confidence 11 122222222222222 22334455556654 33444444444 466667755442 22222222
Q ss_pred CeEEEEEcCCCcEEE-EeCCcEEEEecCCC
Q 005123 400 TVWDLAWHPIGYLLC-SNDHTTKFWCRNRP 428 (713)
Q Consensus 400 ~V~~l~~spdg~~la-S~Dg~v~iWd~~~~ 428 (713)
.....|++||..|+ +.++.|.++|++..
T Consensus 235 -~~~~~~SpDG~~I~f~~~~~l~~~d~~~g 263 (281)
T d1k32a2 235 -YYPRHLNTDGRRILFSKGGSIYIFNPDTE 263 (281)
T ss_dssp -SCEEEEEESSSCEEEEETTEEEEECTTTC
T ss_pred -cccccCcCCCCEEEEEeCCEEEEEECCCC
Confidence 23346899996655 58888877776443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=0.00082 Score=66.19 Aligned_cols=232 Identities=11% Similarity=0.003 Sum_probs=148.7
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCc----eeeeeccCCCCee
Q 005123 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNN----VKANKSAHKESVR 232 (713)
Q Consensus 158 ~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~DG~I~vwdl~~~~----~~~~~~~~~~~V~ 232 (713)
+|+.+... .|+..++.+.+....+. ....+.+|+|....+.|+... .++.|...+++... ....+......+.
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCC-eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 34444433 58888988766555444 455678999998888887665 45667666665321 2222233345677
Q ss_pred EEEEecCCCEEEEE-ECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEc
Q 005123 233 DLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFH 309 (713)
Q Consensus 233 ~l~fs~dg~~Las~-s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs--~Dg~I~IwDl~t~~~~~~~~ 309 (713)
+|++...+..|+.+ ...++|.+.++........+.........|++++...+|.... ..+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 88988766665555 4567899999987666565665667789999998666666554 33457777776544444444
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeeEEEeec--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCC
Q 005123 310 GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latg-s~Dg~I~IwDl~t~~~l~~~~~--h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~ 386 (713)
..-...+.+++.+.++.|+.+ ...+.|...|+........+.. ......+|++. ++.++++-..++.|+..+..+
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence 444668899999877777765 4567899999875443333322 22346678875 355666656778888888766
Q ss_pred CCceEEE
Q 005123 387 ETPQVEI 393 (713)
Q Consensus 387 ~~~~~~~ 393 (713)
+.....+
T Consensus 239 g~~~~~~ 245 (266)
T d1ijqa1 239 GSDVNLL 245 (266)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 5544333
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=0.00065 Score=66.86 Aligned_cols=217 Identities=7% Similarity=-0.036 Sum_probs=144.7
Q ss_pred CceEEEEEccCCCEEEEEE-CCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCceee
Q 005123 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKA 222 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs-~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~DG~I~vwdl~~~~~~~ 222 (713)
..|.+|+|....++|+... .++.|+..++........+......+.+|++..-++.|+.+ ...+.|.+.+++......
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence 4578899998888777665 45778888888766666665545678899997766666655 456799999988765544
Q ss_pred eeccCCCCeeEEEEecCCCEEEEEECC-Ce--EEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 005123 223 NKSAHKESVRDLSFCRTDLKFCSCSDD-TT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWD 298 (713)
Q Consensus 223 ~~~~~~~~V~~l~fs~dg~~Las~s~D-g~--I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sg-s~Dg~I~IwD 298 (713)
.+.........|++.+...+|+....+ +. |..-++..................|+++..++.|..+ ...++|...|
T Consensus 116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~ 195 (263)
T d1npea_ 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (263)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence 444444678999999888777765433 23 4444555443333343344567899999877777665 4567899999
Q ss_pred CCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeEEEeec-CCCCeEEEEEeC
Q 005123 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG-HRKDVTALAWHP 364 (713)
Q Consensus 299 l~t~~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l~~~~~-h~~~V~sl~fsp 364 (713)
++.......+.+. ....+|++. +.+|+... .++.|...|..+++.+..+.. .......|++.+
T Consensus 196 ~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 196 PAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCCCCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 8765444344433 334577775 45565544 668899999998888766642 223445555544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=0.0025 Score=62.52 Aligned_cols=224 Identities=8% Similarity=-0.048 Sum_probs=139.4
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEE-CCCeEEEEEcCCCe----eEEEEccCCCceEE
Q 005123 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQ----EERSLTGHGWDVKS 275 (713)
Q Consensus 201 L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s-~Dg~I~iwDl~~~~----~~~~l~~h~~~V~s 275 (713)
|+.+. ...|+..++++.+...... ....+.+|+|...++.|+-+. .++.|+..++.... ....+......+..
T Consensus 4 Ll~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g 81 (266)
T d1ijqa1 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (266)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence 44443 3458888888766554443 445678899998887777665 45667776664321 22233334456778
Q ss_pred EEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeeEEEeec
Q 005123 276 VDWHPTKSLLVSG-GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRG 352 (713)
Q Consensus 276 l~~spdg~~L~sg-s~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs--~Dg~I~IwDl~t~~~l~~~~~ 352 (713)
|++...++.|..+ ...++|.+.+++.......+.........+++++...+|+... ..+.|...++...........
T Consensus 82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~ 161 (266)
T d1ijqa1 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 161 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence 8888756555555 4567899999987665555555567789999998766666554 334677777764433333333
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEec-ccCCCeEEEEEcCCCcEEEE-eCCcEEEEecC
Q 005123 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCS-NDHTTKFWCRN 426 (713)
Q Consensus 353 h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~laS-~Dg~v~iWd~~ 426 (713)
.-...+.+++++.+++++++-...+.|...+++.......... .......+|++..+..+.+. .++.|...+..
T Consensus 162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECC
Confidence 4466789999985555666666678899999865443322222 12245678888865555444 55666555543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.14 E-value=0.00031 Score=77.29 Aligned_cols=252 Identities=9% Similarity=0.026 Sum_probs=152.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC----CCEEEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeec
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----~~V~sl~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~ 225 (713)
+..|+.++.|+.|.-.|.++++.+-.....+ ..+++--...+ ..++++. .+|.|+-+|+++++++..+.
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 4568888999999999999999876654321 11221111113 3444444 36889999999999877543
Q ss_pred cCC-------------------------------------CCe-eEEEEecCCCEEEEEEC----------------CCe
Q 005123 226 AHK-------------------------------------ESV-RDLSFCRTDLKFCSCSD----------------DTT 251 (713)
Q Consensus 226 ~~~-------------------------------------~~V-~~l~fs~dg~~Las~s~----------------Dg~ 251 (713)
... ..+ ...++.++...++.+.. ...
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence 211 111 23455666666665543 246
Q ss_pred EEEEEcCCCeeEEEEccCCCce---------EEEEEcCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC-------
Q 005123 252 VKVWDFARCQEERSLTGHGWDV---------KSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~~V---------~sl~~spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~------- 312 (713)
|...|+++++.+..+......+ ....+..+++ .++.++++|.++++|.++++.+...+...
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~ 353 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence 8888999999887776432221 1122222343 56788899999999999998875432100
Q ss_pred ---------------------CCe-----------EEEEEcCCCCEEEEEECC---------------------------
Q 005123 313 ---------------------NMV-----------LCVKWNQNGNWVLTASKD--------------------------- 333 (713)
Q Consensus 313 ---------------------~~I-----------~si~fspdg~~Latgs~D--------------------------- 333 (713)
..+ ...+++|+..++++...+
T Consensus 354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (571)
T d2ad6a1 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence 000 124667766666554322
Q ss_pred ----------CeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEE
Q 005123 334 ----------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (713)
Q Consensus 334 ----------g~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~ 403 (713)
|.|.-+|+++++.+..+..-....... .+- .+.++++++.||.++.+|.++++.+.+........-.-
T Consensus 434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P 511 (571)
T d2ad6a1 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred ccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce-eEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc
Confidence 357778888888876665222111111 111 45678889999999999999999877766543332223
Q ss_pred EEEcCCC
Q 005123 404 LAWHPIG 410 (713)
Q Consensus 404 l~~spdg 410 (713)
+.|.-||
T Consensus 512 ~ty~~dG 518 (571)
T d2ad6a1 512 MTYSFKG 518 (571)
T ss_dssp EEEEETT
T ss_pred eEEEECC
Confidence 4555566
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.07 E-value=0.0044 Score=60.90 Aligned_cols=227 Identities=10% Similarity=0.102 Sum_probs=150.0
Q ss_pred EEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccC-
Q 005123 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (713)
Q Consensus 150 v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~~~~~~~~~- 227 (713)
.-.+|..+.||.=+ ...+.|||+++.+.++.+...+ .|.--.|.. .+.|+..+ +..|+-|+++.. ...+.+..|
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESS-SSEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecC-CCEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence 44567777777655 5589999999999888887644 566667774 45666555 467999999653 233333333
Q ss_pred ---CCCeeEEEEecCCCEEEEEE---C----CCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCC---CEEEEEe---CC
Q 005123 228 ---KESVRDLSFCRTDLKFCSCS---D----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGG---KD 291 (713)
Q Consensus 228 ---~~~V~~l~fs~dg~~Las~s---~----Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg---~~L~sgs---~D 291 (713)
...|.....+++.++++..+ . .|.+.+|..+++ .-..+.+|......+.+.-+. ++|+.+. ..
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 34677777888888876543 2 367889998764 456667776655555544221 2333332 23
Q ss_pred CcEEEEECCCCce--------EEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEE
Q 005123 292 SLVKLWDAKSGRE--------LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (713)
Q Consensus 292 g~I~IwDl~t~~~--------~~~~----~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~s 359 (713)
++|.|.++..... ...+ ....+.-.++..|..-..++.-+.-|.|.+||+.++.++..-+-..+.|..
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence 5788988865211 1111 122445677888888889999999999999999999999888877777775
Q ss_pred EEEeCCCCCEEEEEECCCcEEEE
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHW 382 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iw 382 (713)
.+-+. +..=+++...+|.|..-
T Consensus 303 ~a~~~-~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 303 TAPHE-ATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp EEEET-TTTEEEEEETTSEEEEE
T ss_pred eccCC-CCceEEEECCCCeEEEE
Confidence 55554 44455555677766543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.06 E-value=0.0016 Score=68.58 Aligned_cols=246 Identities=12% Similarity=0.056 Sum_probs=137.7
Q ss_pred CCCCceEEEEEccCCCEEEEEE-CC----CcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCC---------
Q 005123 142 KNRCSINRVLWTPTGRRLITGS-QS----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 207 (713)
Q Consensus 142 ~H~~~V~~v~~spdg~~Latgs-~d----g~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~D--------- 207 (713)
++.-.+..+++|||+++||.+- .+ ..|+++|+.+++.+..... ......++|+.|++.|+....+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccc
Confidence 3444556778999999998553 23 4589999999987643211 1222568999999988755432
Q ss_pred -------CcEEEEEcCCCce--eeeecc--CCCCeeEEEEecCCCEEEEEEC---CCe--EEEEEcCCCe--------eE
Q 005123 208 -------GAIKYWQNNMNNV--KANKSA--HKESVRDLSFCRTDLKFCSCSD---DTT--VKVWDFARCQ--------EE 263 (713)
Q Consensus 208 -------G~I~vwdl~~~~~--~~~~~~--~~~~V~~l~fs~dg~~Las~s~---Dg~--I~iwDl~~~~--------~~ 263 (713)
..|.+|.+.+... +..+.. ....+..+..+.++++++.... +.. +.+.|+.... ..
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 2577777766532 222222 2335667788899998765432 233 4444543211 12
Q ss_pred EEEccCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCce--EEEE-ccCCCCeEEEEEcCCCCEEEEEE-CCC--
Q 005123 264 RSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRE--LCSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQ-- 334 (713)
Q Consensus 264 ~~l~~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~~--~~~~-~~h~~~I~si~fspdg~~Latgs-~Dg-- 334 (713)
..+......+.-+.. .++.+++.... ++.|...++.+... ...+ ..+...+..-.++..+++|+... .++
T Consensus 281 ~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 281 KLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (430)
T ss_dssp EEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence 222222333333332 22333333332 45677777765432 1233 33344444434444555666554 554
Q ss_pred eEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcCCCCc
Q 005123 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETP 389 (713)
Q Consensus 335 ~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~---DG~I~Iwd~~~~~~ 389 (713)
.|+++++.+++....+......|..+.....+..++++.++ =.+++.+|+.++..
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 58899998877665554445566666555534444444433 25788888877654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.03 E-value=0.00033 Score=77.44 Aligned_cols=252 Identities=9% Similarity=0.007 Sum_probs=151.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC----CCEEEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeec
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----~~V~sl~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~ 225 (713)
..+|+.++.|+.|+-.|.++++.+..+...+ ..++.--.. .++.++++. ..|.|+-+|+++++++..+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 3478899999999999999999888775321 111111011 134455553 24899999999999887643
Q ss_pred cCC-------------------------------------C-CeeEEEEecCCCEEEEEEC----------------CCe
Q 005123 226 AHK-------------------------------------E-SVRDLSFCRTDLKFCSCSD----------------DTT 251 (713)
Q Consensus 226 ~~~-------------------------------------~-~V~~l~fs~dg~~Las~s~----------------Dg~ 251 (713)
... . .-..+++.+...+++.+.. ...
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence 210 0 1123455666666665533 235
Q ss_pred EEEEEcCCCeeEEEEccCCC---------ceEEEEE-cCCCC---EEEEEeCCCcEEEEECCCCceEEEEccCC--CC--
Q 005123 252 VKVWDFARCQEERSLTGHGW---------DVKSVDW-HPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK--NM-- 314 (713)
Q Consensus 252 I~iwDl~~~~~~~~l~~h~~---------~V~sl~~-spdg~---~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~--~~-- 314 (713)
|...|+++++.+-.+..... ....+.. ..+++ .++...++|.+.++|.++++.+...+... ..
T Consensus 280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~ 359 (596)
T d1w6sa_ 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (596)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccc
Confidence 88889999998876653211 1222222 23443 67788999999999999998875432100 00
Q ss_pred ----------------------e-------------EEEEEcCCCCEEEEEEC---------------------------
Q 005123 315 ----------------------V-------------LCVKWNQNGNWVLTASK--------------------------- 332 (713)
Q Consensus 315 ----------------------I-------------~si~fspdg~~Latgs~--------------------------- 332 (713)
. ...+++++..++++...
T Consensus 360 ~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 439 (596)
T d1w6sa_ 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY 439 (596)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccc
Confidence 0 12355555555544321
Q ss_pred ------------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCC
Q 005123 333 ------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (713)
Q Consensus 333 ------------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~ 400 (713)
.|.|.-||+.+++.+...... ..+.+-.++- .+.+++.|+.||.++.+|.++++.+.+........
T Consensus 440 ~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~ 517 (596)
T d1w6sa_ 440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (596)
T ss_dssp ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCcccCcccCCCcceEEEEeCCCCceecccCCC-CCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcc
Confidence 146778888888877655422 1111111222 46778889999999999999999887765543222
Q ss_pred eEEEEEcCCC
Q 005123 401 VWDLAWHPIG 410 (713)
Q Consensus 401 V~~l~~spdg 410 (713)
-.=+.|.-||
T Consensus 518 a~P~tY~~dG 527 (596)
T d1w6sa_ 518 GYPMTYTHKG 527 (596)
T ss_dssp SCCEEEEETT
T ss_pred cCCeEEEECC
Confidence 2223444466
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.03 E-value=0.00055 Score=75.09 Aligned_cols=252 Identities=9% Similarity=0.054 Sum_probs=151.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCCC----EEEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeec
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----IRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~----V~sl~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~~ 225 (713)
+..|+.++.|+.|.-.|..+++.+-........ ++..-...+ ..++++. ..|.|.-+|.++++.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeec-CcccccccceeccccceEEEEECCCceEEeeee
Confidence 457888899999999999999988776543211 111000112 3344432 23679999999999877663
Q ss_pred cC------------------------------CCCe-eEEEEecCCCEEEEEEC-------------------CCeEEEE
Q 005123 226 AH------------------------------KESV-RDLSFCRTDLKFCSCSD-------------------DTTVKVW 255 (713)
Q Consensus 226 ~~------------------------------~~~V-~~l~fs~dg~~Las~s~-------------------Dg~I~iw 255 (713)
.. ...+ ..+++.++..+++.+.. ...|...
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence 21 0111 22455666666554321 2357778
Q ss_pred EcCCCeeEEEEccCCCceE---------EEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEccCC-CC--------
Q 005123 256 DFARCQEERSLTGHGWDVK---------SVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NM-------- 314 (713)
Q Consensus 256 Dl~~~~~~~~l~~h~~~V~---------sl~~spdg---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~-~~-------- 314 (713)
|+++++.+..+......+. -+.+..++ ..++.+.++|.++++|.++++.+....... ..
T Consensus 276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence 8899988766653222211 11222233 367778899999999999999876542110 00
Q ss_pred ---------------------------eEEEEEcCCCCEEEEEEC-----------------------------------
Q 005123 315 ---------------------------VLCVKWNQNGNWVLTASK----------------------------------- 332 (713)
Q Consensus 315 ---------------------------I~si~fspdg~~Latgs~----------------------------------- 332 (713)
-...+++++..++++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence 013456676666665432
Q ss_pred -CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 333 -DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 333 -Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
.|.|.-||+.+++.+..+.... ...+-.++- .+.++++++.||.++.+|.++++.+.+........-.-+.+.-+|
T Consensus 436 ~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG 512 (560)
T d1kv9a2 436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (560)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cccceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 2467889999999887765322 111111222 467888899999999999999998777655432222224445566
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.00 E-value=0.0073 Score=59.33 Aligned_cols=229 Identities=11% Similarity=0.115 Sum_probs=145.6
Q ss_pred CcEEEEeCCCCceE-EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEE
Q 005123 166 GEFTLWNGQSFNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (713)
Q Consensus 166 g~V~Iwd~~t~~~~-~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~La 244 (713)
..|.|.|+.+.... +.-..-+ +.-.+|..+.|+.-+ ..++.|+|+++...++... ..+.|.--.|..+. .|+
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~ 117 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVA 117 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS-EEE
T ss_pred ceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC-EEE
Confidence 46888998775533 2222222 344678888888766 5689999999998887764 44567667776444 444
Q ss_pred EEECCCeEEEEEcCCC-eeEEEEccC----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceEEEEccCC
Q 005123 245 SCSDDTTVKVWDFARC-QEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (713)
Q Consensus 245 s~s~Dg~I~iwDl~~~-~~~~~l~~h----~~~V~sl~~spdg~~L~sgs~-------Dg~I~IwDl~t~~~~~~~~~h~ 312 (713)
..+ +..|+.|+++.. ...+.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 118 lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGha 195 (327)
T d1utca2 118 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 195 (327)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcccccee
Confidence 444 458999999542 345555544 356888888999998776542 36688999774 4556677776
Q ss_pred CCeEEEEEcCCC---CEEEEEE---CCCeEEEEECCCCe---------eEEEee---cCCCCeEEEEEeCCCCCEEEEEE
Q 005123 313 NMVLCVKWNQNG---NWVLTAS---KDQIIKLYDIRAMK---------ELESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 313 ~~I~si~fspdg---~~Latgs---~Dg~I~IwDl~t~~---------~l~~~~---~h~~~V~sl~fsp~~~~~lasgs 374 (713)
+....+.+.-+. .+|+.+. ..+++.|.++.... .+..+- .-.+--.++..|. .-.++...+
T Consensus 196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviT 274 (327)
T d1utca2 196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 274 (327)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEe
Confidence 655555443211 2333332 23578888886421 111111 1234467788887 678889999
Q ss_pred CCCcEEEEEcCCCCceEEEecccCCCeEEEE
Q 005123 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (713)
Q Consensus 375 ~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (713)
.-|.|++||++++..+..-.. ..+.|...+
T Consensus 275 K~G~i~lyDleTgt~i~~nRI-s~~~iF~~a 304 (327)
T d1utca2 275 KYGYIHLYDLETGTCIYMNRI-SGETIFVTA 304 (327)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred cCcEEEEEEcccccEEEEeec-CCCceEEec
Confidence 999999999998876554332 344454333
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.00 E-value=0.0012 Score=68.27 Aligned_cols=224 Identities=10% Similarity=0.096 Sum_probs=142.5
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEeccC---------------------------------------CCE--EEEEEcc-
Q 005123 159 LITGSQSGEFTLWNGQSFNFEMILQAHD---------------------------------------HAI--RSMVWSH- 196 (713)
Q Consensus 159 Latgs~dg~V~Iwd~~t~~~~~~l~~h~---------------------------------------~~V--~sl~~sp- 196 (713)
+.+|+.+|.|+||-+-+.+.++.+...+ +.. -.+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 5577888999999888777766653110 011 1334432
Q ss_pred --CCCEEEEEe-CCCcEEEEEcCCCceeeeecc-CCCCeeEEEEec--CCCEEEEEECC------------------CeE
Q 005123 197 --NDNWMVSGD-DGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCR--TDLKFCSCSDD------------------TTV 252 (713)
Q Consensus 197 --dg~~L~sgs-~DG~I~vwdl~~~~~~~~~~~-~~~~V~~l~fs~--dg~~Las~s~D------------------g~I 252 (713)
||++|++.. .+..|.+.|+++.+....+.. ....+..+.... +..+++..+.+ +.+
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 678888776 568899999999887654433 344566666644 45667666653 236
Q ss_pred EEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCc---------------EEEEEC------------------
Q 005123 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL---------------VKLWDA------------------ 299 (713)
Q Consensus 253 ~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~---------------I~IwDl------------------ 299 (713)
.++|..+.+....+.. ......++++++|+++++.+.+.. +.+++.
T Consensus 176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV 254 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 254 (459)
T ss_dssp EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence 7889998888776653 346778999999999999875421 333333
Q ss_pred -----CC--C-ceEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeeE-----------EEeecCCCCeEE
Q 005123 300 -----KS--G-RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKEL-----------ESFRGHRKDVTA 359 (713)
Q Consensus 300 -----~t--~-~~~~~~~~h~~~I~si~fspdg~~Latgs-~Dg~I~IwDl~t~~~l-----------~~~~~h~~~V~s 359 (713)
++ + ..++.+. -......+.++|||+++++++ .+.+|.|+|++....+ ..-....-.-..
T Consensus 255 ~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh 333 (459)
T d1fwxa2 255 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 333 (459)
T ss_dssp EEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred eeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence 21 1 1111111 112345688999999998766 5789999999743221 111112233466
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 360 LAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 360 l~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.+|+. .++...|.--|..|.-|++.
T Consensus 334 t~fd~-~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 334 TAFDG-RGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEECT-TSEEEEEETTTTEEEEEEHH
T ss_pred cccCC-CceEEEEeeccceEEEEecc
Confidence 67876 56666666689999999984
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.93 E-value=0.00089 Score=73.57 Aligned_cols=251 Identities=10% Similarity=0.038 Sum_probs=146.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccCC---CE--EEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeee
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AI--RSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~---~V--~sl~~spdg~~L~sgs------~DG~I~vwdl~~~~~~~~~ 224 (713)
...++.++.|+.++-.|.++++.+-....... .+ +..-.. .+..+++++ ..|.|+.+|.++++++..+
T Consensus 128 ~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (573)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCcEEEEecccceeeeccccccceecccCccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeee
Confidence 34677888899999999999988765543211 11 110001 134444443 2478999999999987765
Q ss_pred ccCC-------------------------------CCe-eEEEEecCCCEEEEEEC-------------------CCeEE
Q 005123 225 SAHK-------------------------------ESV-RDLSFCRTDLKFCSCSD-------------------DTTVK 253 (713)
Q Consensus 225 ~~~~-------------------------------~~V-~~l~fs~dg~~Las~s~-------------------Dg~I~ 253 (713)
.... ..+ ...++.++...++.... ...|.
T Consensus 207 ~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svv 286 (573)
T d1kb0a2 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (573)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred eeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEE
Confidence 2210 111 12445555555554321 12577
Q ss_pred EEEcCCCeeEEEEccCCCc---------eEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEccCCC--------
Q 005123 254 VWDFARCQEERSLTGHGWD---------VKSVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-------- 313 (713)
Q Consensus 254 iwDl~~~~~~~~l~~h~~~---------V~sl~~spdg---~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~-------- 313 (713)
..|+++++....+...... ........++ ..++.++++|.+++||.++++.+........
T Consensus 287 Ald~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~ 366 (573)
T d1kb0a2 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (573)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccc
Confidence 7788888776655432211 1122222223 3677788999999999999998765432110
Q ss_pred ---------------------------CeEEEEEcCCCCEEEEEECC---------------------------------
Q 005123 314 ---------------------------MVLCVKWNQNGNWVLTASKD--------------------------------- 333 (713)
Q Consensus 314 ---------------------------~I~si~fspdg~~Latgs~D--------------------------------- 333 (713)
.-..++++++..++++...+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 446 (573)
T d1kb0a2 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (573)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred ccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccc
Confidence 00124567766666553222
Q ss_pred ----------CeEEEEECCCCeeEEEeecCCCCe-EEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeE
Q 005123 334 ----------QIIKLYDIRAMKELESFRGHRKDV-TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (713)
Q Consensus 334 ----------g~I~IwDl~t~~~l~~~~~h~~~V-~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~ 402 (713)
|.|.-||+.+++.+..++...... ..++ - .+.+|++++.||.++.||.++++.+.+........-.
T Consensus 447 ~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~ls--t-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~ 523 (573)
T d1kb0a2 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT--T-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (573)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEE--E-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcccc
Confidence 357778888888887776432211 1222 2 4678888999999999999999987776543221111
Q ss_pred EEEEcCCC
Q 005123 403 DLAWHPIG 410 (713)
Q Consensus 403 ~l~~spdg 410 (713)
=+.|.-+|
T Consensus 524 P~ty~~~G 531 (573)
T d1kb0a2 524 PSTYMVDG 531 (573)
T ss_dssp CEEEEETT
T ss_pred CEEEEECC
Confidence 14444566
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.92 E-value=0.0011 Score=72.67 Aligned_cols=189 Identities=10% Similarity=0.086 Sum_probs=115.5
Q ss_pred EEEEEE-CCCcEEEEeC-CCCceEEEEeccCC----C-------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 158 RLITGS-QSGEFTLWNG-QSFNFEMILQAHDH----A-------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 158 ~Latgs-~dg~V~Iwd~-~t~~~~~~l~~h~~----~-------V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
.|++++ .++.|+..|. ++++.+-++..... . -+.+++. +..|+.++.||.|...|.+++++....
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhccc
Confidence 455554 3678888886 46887766542100 0 0223443 457778889999999999999887655
Q ss_pred ccCC----CCeeEEEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCC------------------------
Q 005123 225 SAHK----ESVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------ 270 (713)
Q Consensus 225 ~~~~----~~V~~l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~------------------------ 270 (713)
.... ..++.--..-++ .++++. .+|.|+-+|+++++.+.++....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 3221 112211111233 344443 36789999999999987654211
Q ss_pred -------------Cce-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceEEEEccCCCC------
Q 005123 271 -------------WDV-KSVDWHPTKSLLVSGGK----------------DSLVKLWDAKSGRELCSFHGHKNM------ 314 (713)
Q Consensus 271 -------------~~V-~sl~~spdg~~L~sgs~----------------Dg~I~IwDl~t~~~~~~~~~h~~~------ 314 (713)
..+ ...+++++..+++.+.. ...|...|+++++.+..+......
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence 111 23466666666666554 245788899999988877642221
Q ss_pred ---eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeeEEE
Q 005123 315 ---VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELES 349 (713)
Q Consensus 315 ---I~si~fspdg~---~Latgs~Dg~I~IwDl~t~~~l~~ 349 (713)
.....+..+++ .++.++.+|.++++|.++++.+..
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 12222223443 466788999999999999988754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.80 E-value=0.0032 Score=65.10 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=121.6
Q ss_pred EEEEec---CCCEEEEEE-CCCeEEEEEcCCCeeEEEEcc-CCCceEEEEEcC--CCCEEEEEeCCC-------------
Q 005123 233 DLSFCR---TDLKFCSCS-DDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHP--TKSLLVSGGKDS------------- 292 (713)
Q Consensus 233 ~l~fs~---dg~~Las~s-~Dg~I~iwDl~~~~~~~~l~~-h~~~V~sl~~sp--dg~~L~sgs~Dg------------- 292 (713)
.+++.. ||++|++.. .+.+|.+.|+++.+....+.. ....+..+.... +-.++++.+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455543 788887776 478999999999988665432 344566666654 455777776632
Q ss_pred -----cEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCC---------------eEEEEEC-----------
Q 005123 293 -----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------------IIKLYDI----------- 341 (713)
Q Consensus 293 -----~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg---------------~I~IwDl----------- 341 (713)
.+.++|..+.+....+.. ......+.++++|+++++.+.+. .|.++++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 266789998887766652 34567899999999999877432 2444443
Q ss_pred ------------CCC---eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCc----------eEEEecc
Q 005123 342 ------------RAM---KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----------QVEIHNV 396 (713)
Q Consensus 342 ------------~t~---~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~----------~~~~~~~ 396 (713)
++. ..++.+. -......+.++|++..+++++..+.+|.|+|+++-.. .+.....
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 210 0111111 1123456789995444555666689999999953211 1111111
Q ss_pred cCCCeEEEEEcCCCcEEEE--eCCcEEEEecC
Q 005123 397 HDNTVWDLAWHPIGYLLCS--NDHTTKFWCRN 426 (713)
Q Consensus 397 h~~~V~~l~~spdg~~laS--~Dg~v~iWd~~ 426 (713)
..-.-...+|+.+|....| -|..|.-|+++
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 1223456789999976666 89999999985
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.77 E-value=0.0014 Score=71.84 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=117.2
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccCC----------CE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~----------~V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
..|++++.++.|+-.|.++++.+-++..... .+ ..++. .+..++.+..|+.|.-.|..+++.+....
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 3677788889999999999988877632110 00 11222 24578888899999999999998877654
Q ss_pred cCCC----CeeEEEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCC-------------------------
Q 005123 226 AHKE----SVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------- 270 (713)
Q Consensus 226 ~~~~----~V~~l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~------------------------- 270 (713)
.... .++..-.--++ .++++. ..|.|+-+|.++++.+-++..-.
T Consensus 145 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp CSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 3221 11111111123 333332 23679999999999987764210
Q ss_pred -----Cc-eEEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceEEEEccCCCCe---------E
Q 005123 271 -----WD-VKSVDWHPTKSLLVSGGK-------------------DSLVKLWDAKSGRELCSFHGHKNMV---------L 316 (713)
Q Consensus 271 -----~~-V~sl~~spdg~~L~sgs~-------------------Dg~I~IwDl~t~~~~~~~~~h~~~I---------~ 316 (713)
.. -..+++++..++++.+.. ...|.-.|+++++.+..+......+ .
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 01 113566666666665432 2347778999999877665322211 1
Q ss_pred EEEEcCCC---CEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 317 CVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 317 si~fspdg---~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
-+.+..++ ..++.++.+|.++++|.++++.+...
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~ 340 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCcccccc
Confidence 12222244 35677889999999999999987554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.72 E-value=0.0026 Score=69.68 Aligned_cols=192 Identities=9% Similarity=0.030 Sum_probs=115.7
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEeccC----------CCE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHD----------HAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~----------~~V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
..|++++.++.|+-+|.++++.+-++.... ..+ ..+.+. +..++.++.|+.+...|.++++.+....
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence 367778888999999999999887664211 011 122222 3467778889999999999998876543
Q ss_pred cCCC---Ce--eEEEEecCCCEEEEEE------CCCeEEEEEcCCCeeEEEEccCC------------------------
Q 005123 226 AHKE---SV--RDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------ 270 (713)
Q Consensus 226 ~~~~---~V--~~l~fs~dg~~Las~s------~Dg~I~iwDl~~~~~~~~l~~h~------------------------ 270 (713)
.... .+ +..-..-+ ..+++++ ..|.|+.+|.++++.+-.+....
T Consensus 156 ~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp TTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CccCCcceEEeecceEEEe-ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 2211 11 11111112 3344432 24689999999999887763211
Q ss_pred -------Cce-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceEEEEccCCC---------C
Q 005123 271 -------WDV-KSVDWHPTKSLLVSGGK-------------------DSLVKLWDAKSGRELCSFHGHKN---------M 314 (713)
Q Consensus 271 -------~~V-~sl~~spdg~~L~sgs~-------------------Dg~I~IwDl~t~~~~~~~~~h~~---------~ 314 (713)
..+ ...+++++..+++.... ...|...|+++++....+..... .
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 011 23556666666655432 12477788888887766543211 1
Q ss_pred eEEEEEcCCC---CEEEEEECCCeEEEEECCCCeeEEEee
Q 005123 315 VLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 315 I~si~fspdg---~~Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
........++ ..++.++.+|.++++|.++++.+...+
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~ 354 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence 1222222233 456778899999999999999876543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.71 E-value=0.0051 Score=67.59 Aligned_cols=189 Identities=9% Similarity=0.076 Sum_probs=113.8
Q ss_pred EEECCCcEEEEeC-CCCceEEEEeccC-----------CCEEEEEEccC----CCEEEEEeCCCcEEEEEcCCCceeeee
Q 005123 161 TGSQSGEFTLWNG-QSFNFEMILQAHD-----------HAIRSMVWSHN----DNWMVSGDDGGAIKYWQNNMNNVKANK 224 (713)
Q Consensus 161 tgs~dg~V~Iwd~-~t~~~~~~l~~h~-----------~~V~sl~~spd----g~~L~sgs~DG~I~vwdl~~~~~~~~~ 224 (713)
+++.++.|...|. ++++.+-++.... ..-+.+++..+ ..+|+.++.|+.|.-.|.++++.+..+
T Consensus 68 ~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~ 147 (596)
T d1w6sa_ 68 HTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKV 147 (596)
T ss_dssp ECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccc
Confidence 3344566777775 4677666553211 01123444332 246888999999999999999988776
Q ss_pred ccCC----CCeeEEEEecCCCEEEEEEC------CCeEEEEEcCCCeeEEEEccCC------------------------
Q 005123 225 SAHK----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG------------------------ 270 (713)
Q Consensus 225 ~~~~----~~V~~l~fs~dg~~Las~s~------Dg~I~iwDl~~~~~~~~l~~h~------------------------ 270 (713)
.... ..++.--.. .+..++++.. .|.|+-+|+++++.+-++....
T Consensus 148 ~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~ 226 (596)
T d1w6sa_ 148 ENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLG 226 (596)
T ss_dssp ECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHH
T ss_pred cccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccc
Confidence 4221 111111111 1334555432 4899999999999987754210
Q ss_pred -------------C-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEcc--CCC-----
Q 005123 271 -------------W-DVKSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHG--HKN----- 313 (713)
Q Consensus 271 -------------~-~V~sl~~spdg~~L~sgs~D----------------g~I~IwDl~t~~~~~~~~~--h~~----- 313 (713)
. .-..+++++..+++..+..+ ..|...|+++++.+..+.. |+.
T Consensus 227 ~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~ 306 (596)
T d1w6sa_ 227 TGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAG 306 (596)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred cccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCcc
Confidence 0 11244666666666665432 3478889999998877653 221
Q ss_pred --CeEEEEE-cCCC---CEEEEEECCCeEEEEECCCCeeEEEe
Q 005123 314 --MVLCVKW-NQNG---NWVLTASKDQIIKLYDIRAMKELESF 350 (713)
Q Consensus 314 --~I~si~f-spdg---~~Latgs~Dg~I~IwDl~t~~~l~~~ 350 (713)
....+.. ..+| +.++..+.+|.++++|.++++.+...
T Consensus 307 ~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 307 VNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp CCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence 1222222 2344 35778889999999999999887543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.67 E-value=0.0022 Score=65.58 Aligned_cols=158 Identities=10% Similarity=0.052 Sum_probs=96.6
Q ss_pred eEEEEEccCCCEEEEEECCC-----------cEEEEeCCCCceEEE---EeccCCCEEEEEEccCCCEEEEEeCC-CcEE
Q 005123 147 INRVLWTPTGRRLITGSQSG-----------EFTLWNGQSFNFEMI---LQAHDHAIRSMVWSHNDNWMVSGDDG-GAIK 211 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~dg-----------~V~Iwd~~t~~~~~~---l~~h~~~V~sl~~spdg~~L~sgs~D-G~I~ 211 (713)
+...+...+|+.++.|+.+. .+.+||..+.+.... ...+.......++..++++++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34455566888888887531 377999988654322 22333334566788899999988765 6899
Q ss_pred EEEcCCCceeeeeccC-CCCeeEEEEecCCCEEEEEECC------CeEEEEEcCCCeeEEEEcc---------CC-----
Q 005123 212 YWQNNMNNVKANKSAH-KESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERSLTG---------HG----- 270 (713)
Q Consensus 212 vwdl~~~~~~~~~~~~-~~~V~~l~fs~dg~~Las~s~D------g~I~iwDl~~~~~~~~l~~---------h~----- 270 (713)
+||..+..-...-... ...-...+...|+++++.++.+ ..+.+||..+.+-...-.. +.
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence 9998877543322111 1223456667789998888653 3689999987653321110 00
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005123 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (713)
Q Consensus 271 ~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~ 304 (713)
.....+....+++.++.+..++.+.++|..+...
T Consensus 182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred cceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence 0111122334677777777777777888776543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.59 E-value=0.013 Score=64.05 Aligned_cols=252 Identities=10% Similarity=0.005 Sum_probs=144.8
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEec--cC------CCEEEEEEccCCCEEEEE-------eCCCcEEEEEcCCCce
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQA--HD------HAIRSMVWSHNDNWMVSG-------DDGGAIKYWQNNMNNV 220 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~--h~------~~V~sl~~spdg~~L~sg-------s~DG~I~vwdl~~~~~ 220 (713)
+..|+.++.|+.+.-.|.++++.+-.... +. ..-..+.--..+..++.. +..+.|.-+|.++++.
T Consensus 117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~ 196 (582)
T d1flga_ 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence 45788899999999999999987654332 11 000001100112333333 2346688888888877
Q ss_pred eeeeccCC----------------------------------------CCe-eEEEEecCCCEEEEEEC-----------
Q 005123 221 KANKSAHK----------------------------------------ESV-RDLSFCRTDLKFCSCSD----------- 248 (713)
Q Consensus 221 ~~~~~~~~----------------------------------------~~V-~~l~fs~dg~~Las~s~----------- 248 (713)
+..+.... ..+ ..+++.+...+++.+..
T Consensus 197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~ 276 (582)
T d1flga_ 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccc
Confidence 65442211 111 23566666666665431
Q ss_pred -------------CCeEEEEEcCCCeeEEEEccCCCc-----------eEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 005123 249 -------------DTTVKVWDFARCQEERSLTGHGWD-----------VKSVDWHPTK---SLLVSGGKDSLVKLWDAKS 301 (713)
Q Consensus 249 -------------Dg~I~iwDl~~~~~~~~l~~h~~~-----------V~sl~~spdg---~~L~sgs~Dg~I~IwDl~t 301 (713)
...|...|+++++..-.+...... +..+... ++ ..++..++++.++++|.++
T Consensus 277 ~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~vldr~t 355 (582)
T d1flga_ 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccc-cccccceeEeecccccEEeecccC
Confidence 235777888888887766532221 1122222 23 2566778899999999999
Q ss_pred CceEEEEccCCC---------------------------------------------CeEEEEEcCCCCEEEEEEC----
Q 005123 302 GRELCSFHGHKN---------------------------------------------MVLCVKWNQNGNWVLTASK---- 332 (713)
Q Consensus 302 ~~~~~~~~~h~~---------------------------------------------~I~si~fspdg~~Latgs~---- 332 (713)
++.+........ .-...+++++...+++...
T Consensus 356 G~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~ 435 (582)
T d1flga_ 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccc
Confidence 887653321100 0012244554444433222
Q ss_pred -----------------------------CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 005123 333 -----------------------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (713)
Q Consensus 333 -----------------------------Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd 383 (713)
.|.|.-+|+.+++.+..+..... +..-..+- .+.++++++.||.++.+|
T Consensus 436 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~D 513 (582)
T d1flga_ 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEE
Confidence 25688889999988877764332 22111222 466888899999999999
Q ss_pred cCCCCceEEEecccCCCeEEEEEcCCC
Q 005123 384 VGHETPQVEIHNVHDNTVWDLAWHPIG 410 (713)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (713)
.++++.+.+........-.-+.|..+|
T Consensus 514 a~TGe~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 514 AKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCCCcEeEEEECCCCccccCEEEEECC
Confidence 999998877665433222235566677
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.36 E-value=0.028 Score=61.23 Aligned_cols=192 Identities=9% Similarity=-0.006 Sum_probs=113.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEeccC--------CCE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 005123 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD--------HAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (713)
Q Consensus 156 g~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~--------~~V-~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~ 226 (713)
+..|++++.++.|+-.|.++++.+-++.... ..+ +.+++ .+..|+.++.|+.+...|.++++.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeecc
Confidence 3467788888999999999998887654211 011 12233 245778889999999999999987654321
Q ss_pred CCC----Ce--eEEEEec--CCCEEEEE-------ECCCeEEEEEcCCCeeEEEEccCCC--------------------
Q 005123 227 HKE----SV--RDLSFCR--TDLKFCSC-------SDDTTVKVWDFARCQEERSLTGHGW-------------------- 271 (713)
Q Consensus 227 ~~~----~V--~~l~fs~--dg~~Las~-------s~Dg~I~iwDl~~~~~~~~l~~h~~-------------------- 271 (713)
... .+ .-+.+.. ....++.. +..+.|.-+|.++++.+-++.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 110 00 0011111 12333332 2346788899988887765532110
Q ss_pred --------------------c-eEEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceEE
Q 005123 272 --------------------D-VKSVDWHPTKSLLVSGGK------------------------DSLVKLWDAKSGRELC 306 (713)
Q Consensus 272 --------------------~-V~sl~~spdg~~L~sgs~------------------------Dg~I~IwDl~t~~~~~ 306 (713)
. -..+++++..++++.+.. ...|...|+++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 1 123667777777766541 2347778999999887
Q ss_pred EEcc--CCCCe-------EEEEEc-CCCC---EEEEEECCCeEEEEECCCCeeEEE
Q 005123 307 SFHG--HKNMV-------LCVKWN-QNGN---WVLTASKDQIIKLYDIRAMKELES 349 (713)
Q Consensus 307 ~~~~--h~~~I-------~si~fs-pdg~---~Latgs~Dg~I~IwDl~t~~~l~~ 349 (713)
.+.. |+... .-+.+. .+++ .++..+.++.++++|.++++.+..
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~ 361 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCccccc
Confidence 7653 22111 112221 1332 456678899999999999887653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.29 E-value=0.1 Score=54.07 Aligned_cols=238 Identities=8% Similarity=0.010 Sum_probs=127.2
Q ss_pred CEEEEEEccCCCEEEEE-eCC----CcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECC-------------
Q 005123 188 AIRSMVWSHNDNWMVSG-DDG----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------- 249 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sg-s~D----G~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~D------------- 249 (713)
.+..+++|||+++|+.+ +.+ -.|+++|+.+++.+.... .......++|+.|++.|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 34567889999998844 333 468999999998765321 12223678999999988765433
Q ss_pred ---CeEEEEEcCCCee--EEEEccC--CCceEEEEEcCCCCEEEEEeC---CCc--EEEEECCCCc--------eEEEEc
Q 005123 250 ---TTVKVWDFARCQE--ERSLTGH--GWDVKSVDWHPTKSLLVSGGK---DSL--VKLWDAKSGR--------ELCSFH 309 (713)
Q Consensus 250 ---g~I~iwDl~~~~~--~~~l~~h--~~~V~sl~~spdg~~L~sgs~---Dg~--I~IwDl~t~~--------~~~~~~ 309 (713)
..|..|.+.+... +..+... ...+..+..+.++++++.... +.. +.+.|+.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 2588888866533 2333332 234677888999998765432 223 4445554321 122233
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCee--EEEe-ecCCCCeEEEEEeCCCCCEEEEEECCC--cEEE
Q 005123 310 GHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDG--SIFH 381 (713)
Q Consensus 310 ~h~~~I~si~fspdg~~Latgs---~Dg~I~IwDl~t~~~--l~~~-~~h~~~V~sl~fsp~~~~~lasgs~DG--~I~I 381 (713)
.....+.-+. +.++.+++... .++.|...++.+... ...+ ..+...+..-.++-.++.+++..-.++ .|++
T Consensus 285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 2233333332 22333444333 246777777765432 2233 334444544333332334444555665 4888
Q ss_pred EEcCCCCceEEEecccCCCeEEEEEcCCC--cEEE-E---eCCcEEEEecCCC
Q 005123 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIG--YLLC-S---NDHTTKFWCRNRP 428 (713)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~la-S---~Dg~v~iWd~~~~ 428 (713)
+++..+.. ..+.....+.|..+....+. .++. + .=.++.-||+...
T Consensus 364 ~~~~~~~~-~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 364 HDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EECCCCcE-EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 88876553 33333334556555544444 2222 2 2255555555443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.27 E-value=0.012 Score=59.80 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=120.5
Q ss_pred EEEEEccCCCEEEEEECC-CcEEEEeCCCCceEEEEecc-CCCEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q 005123 148 NRVLWTPTGRRLITGSQS-GEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNN 219 (713)
Q Consensus 148 ~~v~~spdg~~Latgs~d-g~V~Iwd~~t~~~~~~l~~h-~~~V~sl~~spdg~~L~sgs~D------G~I~vwdl~~~~ 219 (713)
.++++..|+++++.|+.+ ..+.+||..+......-... ...-.+++...|+++++.++.+ ..+.+||..+++
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 456788999999888755 68999998876554322111 1223456667799999988753 468999988765
Q ss_pred eeeeecc---------CC-----CCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEcc------C--CCceEEEE
Q 005123 220 VKANKSA---------HK-----ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG------H--GWDVKSVD 277 (713)
Q Consensus 220 ~~~~~~~---------~~-----~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~------h--~~~V~sl~ 277 (713)
-...-.. +. .....+....+++.++.+..++.+.++|..+......... . ...-.++.
T Consensus 159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 3221100 00 0111122334667777777777777777776544322110 0 01112233
Q ss_pred E-cCCCCEEEEEeCCC--------cEEEEECCCCc---eEEEEcc---CCCCeEEEEEcCCCCEEEEEECCC--------
Q 005123 278 W-HPTKSLLVSGGKDS--------LVKLWDAKSGR---ELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQ-------- 334 (713)
Q Consensus 278 ~-spdg~~L~sgs~Dg--------~I~IwDl~t~~---~~~~~~~---h~~~I~si~fspdg~~Latgs~Dg-------- 334 (713)
+ ..++++++.|+... ...++++.... ....... ....-.+....+|++++++|+.+.
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 3 23566677665321 23444433211 1111110 112233455567999999887431
Q ss_pred ---eEEEEECCCCeeEE--EeecCCCCeEEEEEeCCCCCEEEEEEC
Q 005123 335 ---IIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 335 ---~I~IwDl~t~~~l~--~~~~h~~~V~sl~fsp~~~~~lasgs~ 375 (713)
++.+||..+.+-.. ........-....+.+ ++++|+.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~-dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP-DGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECC-CCEEEEEeCC
Confidence 47889987654221 1111111112233455 7788888874
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.03 E-value=0.13 Score=51.61 Aligned_cols=183 Identities=8% Similarity=0.072 Sum_probs=104.7
Q ss_pred eEEEEEccCCCEEEEEEC------------CCcEEEEeCCCCceEE-EE--ecc-----CCCEEEEEE--ccCCC-EEEE
Q 005123 147 INRVLWTPTGRRLITGSQ------------SGEFTLWNGQSFNFEM-IL--QAH-----DHAIRSMVW--SHNDN-WMVS 203 (713)
Q Consensus 147 V~~v~~spdg~~Latgs~------------dg~V~Iwd~~t~~~~~-~l--~~h-----~~~V~sl~~--spdg~-~L~s 203 (713)
-..++..+||..+++++. .|.|.++|+++.+... .+ .+. .-.-..+.+ ..+++ +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 345777888876665532 4899999987653321 22 211 112344443 34555 4555
Q ss_pred Ee---CCCcEEEEEcCCCce--e--eeec-cCCCCeeEEEEecCCCEEEEEEC---------------CCeEEEEEcCCC
Q 005123 204 GD---DGGAIKYWQNNMNNV--K--ANKS-AHKESVRDLSFCRTDLKFCSCSD---------------DTTVKVWDFARC 260 (713)
Q Consensus 204 gs---~DG~I~vwdl~~~~~--~--~~~~-~~~~~V~~l~fs~dg~~Las~s~---------------Dg~I~iwDl~~~ 260 (713)
.. ...+|.+|++..... . ..+. ......++|++..++..++|-.. -.+..+|....+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 43 346788888754431 1 1111 22345789999999988777321 123344444444
Q ss_pred eeEEEEccCCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEE--EccCCCCeEEEEEcC-CCCEEEEE
Q 005123 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQ-NGNWVLTA 330 (713)
Q Consensus 261 ~~~~~l~~h~~~V~sl~~spdg~~L~sgs-~Dg~I~IwDl~t~~~~~~--~~~h~~~I~si~fsp-dg~~Latg 330 (713)
+..... ......+.|++++|+++|+++. ..+.|++|++.....+.. ...-....-.+.+.+ +|.+.+++
T Consensus 197 ~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 DVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred ceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 333222 2345689999999998776654 567899999875443322 222445567788875 45555444
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0077 Score=58.58 Aligned_cols=216 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred CcEEEEeCCCCceEEE--EeccCCCEEEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeccCCCCeeEE
Q 005123 166 GEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVSGDD---------GGAIKYWQNNMNNVKANKSAHKESVRDL 234 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~--l~~h~~~V~sl~~spdg~~L~sgs~---------DG~I~vwdl~~~~~~~~~~~~~~~V~~l 234 (713)
..|.+||.++.+.... +......-..+.+ ++++++.|+. -..+.+||..+......-......-...
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 3578999988764432 2111112222222 5566666542 1356777877665433221111111111
Q ss_pred EEecCCCEEEEEECCC-----eEEEEEcCCCeeEEEEcc--CCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 005123 235 SFCRTDLKFCSCSDDT-----TVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSG 302 (713)
Q Consensus 235 ~fs~dg~~Las~s~Dg-----~I~iwDl~~~~~~~~l~~--h~~~V~sl~~spdg~~L~sgs~D-----g~I~IwDl~t~ 302 (713)
+..-+++.++.++.++ .+..+|..+......... .......+.+ ++.+++.|+.+ ..+..||..+.
T Consensus 97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~~GG~~~~~~~~~~~~~d~~~~ 174 (288)
T d1zgka1 97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN 174 (288)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee--eecceEecCcccccccceEEEeecccc
Confidence 1222555555544333 345566665443221111 1111222222 34555555543 34788888765
Q ss_pred ceEEEEcc-CCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeeEEEeecCCCCe-EEEEEeCCCCCEEEEEEC
Q 005123 303 RELCSFHG-HKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELESFRGHRKDV-TALAWHPFHEEYFVSGSL 375 (713)
Q Consensus 303 ~~~~~~~~-h~~~I~si~fspdg~~Latgs~D-----g~I~IwDl~t~~~l~~~~~h~~~V-~sl~fsp~~~~~lasgs~ 375 (713)
+....-.. ......+++.. ++++++.++.+ ..+.++|..+.+....-....... .+++.. ++++++.|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~ 251 (288)
T d1zgka1 175 EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGY 251 (288)
T ss_dssp EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred ccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE--CCEEEEEecC
Confidence 43322111 11111222222 45556665544 357788887655433211111111 222322 5677777765
Q ss_pred CC-----cEEEEEcCCCC
Q 005123 376 DG-----SIFHWLVGHET 388 (713)
Q Consensus 376 DG-----~I~Iwd~~~~~ 388 (713)
++ .|.+||+.++.
T Consensus 252 ~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 252 DGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CSSCBCCEEEEEETTTTE
T ss_pred CCCeecceEEEEECCCCE
Confidence 54 37788886643
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=96.89 E-value=0.025 Score=55.02 Aligned_cols=226 Identities=13% Similarity=0.070 Sum_probs=116.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~ 265 (713)
...|..|+-. ..+.++.. ||.|..|-.+....+-.-......|..|+.- ....+.- .|+.+..|.....-....
T Consensus 25 ~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~al-~dg~v~~wG~~~~gq~~~ 98 (273)
T d1jtdb_ 25 QSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-KDGEVIAWGGNEDGQTTV 98 (273)
T ss_dssp SSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEEE-ETTEEEEEECCTTSTTCC
T ss_pred CCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceeee-eeeeeeccCCCcceeecc
Confidence 4567777763 33444444 8999999766543332223334456666542 2222222 489999998644222111
Q ss_pred EccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005123 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (713)
Q Consensus 266 l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~ 345 (713)
.......+..++.... ..+ ...|+.+..|.................|..++- +.+.+....++.++.|......
T Consensus 99 ~~~~~~~~~~i~~~~~--~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~g~~~~~G~~~~g 172 (273)
T d1jtdb_ 99 PAEARSGVDAIAAGAW--ASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG---GVYTALAVKNGGVIAWGDNYFG 172 (273)
T ss_dssp CGGGGSSCCEEEEETT--EEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE---CSSEEEEEETTEEEEEECCTTS
T ss_pred ccccccceeEEeeecc--ccc-ccccccceecccCCCCceeeeccCCceEEEEec---cceeeeeecccceeEeecccCC
Confidence 1112233555554422 222 235889999975432222111122334554443 2223334457889999765433
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcCCCCceEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEec
Q 005123 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCR 425 (713)
Q Consensus 346 ~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~ 425 (713)
.+.........|..|+.. ....+.-. ||.|+.|=......+-. .......|..|+-..... ++-.|+.|..|-.
T Consensus 173 ~~~~~~~~~~~v~~Is~G---~~h~~~l~-dG~v~~WG~n~~Gql~~-~~~~~~~v~~I~~G~~~~-~~l~~g~v~~WG~ 246 (273)
T d1jtdb_ 173 QTTVPAEAQSGVDDVAGG---IFHSLALK-DGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWYS-LALKNGKVIAWGS 246 (273)
T ss_dssp TTSCCGGGSSSEEEEEEC---SSEEEEEE-TTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSCE-EEEETTEEEEEST
T ss_pred cccccccccCCccceecc---ceeeEEEe-cCcEEEcCCCCCCccCC-CccCCCCcEEEEeCcceE-EEEECCEEEEECC
Confidence 332222344568888764 33333334 89999996544332211 111234577776554443 3346999999965
Q ss_pred CCCC
Q 005123 426 NRPG 429 (713)
Q Consensus 426 ~~~~ 429 (713)
+..+
T Consensus 247 ~~~~ 250 (273)
T d1jtdb_ 247 SRTA 250 (273)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 4433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.77 E-value=0.061 Score=54.35 Aligned_cols=189 Identities=9% Similarity=0.131 Sum_probs=116.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEec----CC--CEEEEEEC-C---CeEEEEEcCC-CeeEEE
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR----TD--LKFCSCSD-D---TTVKVWDFAR-CQEERS 265 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~----dg--~~Las~s~-D---g~I~iwDl~~-~~~~~~ 265 (713)
+..+++....++-|.+||++ ++.+..+. .+.++.|..-. ++ ..|++++. + .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45677777777779999996 55555443 35666665432 22 22445542 2 3688888742 223333
Q ss_pred Ecc-------CCCceEEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CC----ceEEEEccCCCCeEEEEEcCCCCEE
Q 005123 266 LTG-------HGWDVKSVDW--HPT-KS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNWV 327 (713)
Q Consensus 266 l~~-------h~~~V~sl~~--spd-g~-~L~sgs~Dg~I~IwDl~---t~----~~~~~~~~h~~~I~si~fspdg~~L 327 (713)
+.. ....+..+|+ ++. +. ++++..++|.+..|.+. .+ +.++++. ....+..|.+......|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 321 1234666666 553 44 56677788998888663 23 2344554 45678899999988999
Q ss_pred EEEECCCeEEEEECCC-----CeeEEEeec--CCCCeEEEEEeCC---CCCEEEEEECCCcEEEEEcCCCCc
Q 005123 328 LTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHPF---HEEYFVSGSLDGSIFHWLVGHETP 389 (713)
Q Consensus 328 atgs~Dg~I~IwDl~t-----~~~l~~~~~--h~~~V~sl~fsp~---~~~~lasgs~DG~I~Iwd~~~~~~ 389 (713)
+++-++.-|+.++... ...+....+ ....+-.|+.-.. .+.+|+|.-.+++..|||......
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~ 266 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK 266 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence 9999988777777642 223333322 3567787776432 234556666688999999876543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.70 E-value=0.37 Score=48.11 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCCceee-ee--ccC-----CCCeeEEEE--ecCCC-EEEEEE---CCCeEEEEEcCCCee-E---EEEcc
Q 005123 207 GGAIKYWQNNMNNVKA-NK--SAH-----KESVRDLSF--CRTDL-KFCSCS---DDTTVKVWDFARCQE-E---RSLTG 268 (713)
Q Consensus 207 DG~I~vwdl~~~~~~~-~~--~~~-----~~~V~~l~f--s~dg~-~Las~s---~Dg~I~iwDl~~~~~-~---~~l~~ 268 (713)
.|.|.++|+.+.+... .+ ... .-.-..+.+ ..++. +|++.. ...+|.+|++..... + ..+..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4889999987653221 11 111 012244444 33554 355543 356788888753321 1 22221
Q ss_pred -CCCceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceEEEEccCCCCeEEEEEcCCCCEEEEEE-
Q 005123 269 -HGWDVKSVDWHPTKSLLVSGGK---------------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS- 331 (713)
Q Consensus 269 -h~~~V~sl~~spdg~~L~sgs~---------------Dg~I~IwDl~t~~~~~~~~~h~~~I~si~fspdg~~Latgs- 331 (713)
.....++|++..++.++++-.. -....+|..+.++. ......-...+.|++++|+++|+++.
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeC
Confidence 2345789999988887777321 12234444443333 22222345689999999998887654
Q ss_pred CCCeEEEEECCCCeeEEE--eecCCCCeEEEEEeCCCCCEEEEEE
Q 005123 332 KDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGS 374 (713)
Q Consensus 332 ~Dg~I~IwDl~t~~~l~~--~~~h~~~V~sl~fsp~~~~~lasgs 374 (713)
..+.|++|++.....+.. +..-....-.+.+.+.++.+++++.
T Consensus 226 ~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 226 LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 567899999875432221 1123345677788654556655553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.69 E-value=0.18 Score=46.35 Aligned_cols=149 Identities=10% Similarity=0.135 Sum_probs=85.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc---------CCCCeeEEEEecCC-CEEEEEEC-CCeEEEEE
Q 005123 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA---------HKESVRDLSFCRTD-LKFCSCSD-DTTVKVWD 256 (713)
Q Consensus 188 ~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~~---------~~~~V~~l~fs~dg-~~Las~s~-Dg~I~iwD 256 (713)
.|.++++. |.+..++|+....+.+|-++.+++...... ..+.|..+.+..-+ .-|+++.. .|.++|+
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~- 182 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF- 182 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE-
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe-
Confidence 35555554 446667888888899998888876543211 12223333332211 22333333 4444444
Q ss_pred cCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEE-Ec------cCCCCeEEEEEcCCCCE
Q 005123 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCS-FH------GHKNMVLCVKWNQNGNW 326 (713)
Q Consensus 257 l~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~---Dg~I~IwDl~t~~~~~~-~~------~h~~~I~si~fspdg~~ 326 (713)
....+.++.....+..+. ++..+ +....-+|+++++..+. +. -....|+.+-+.|++++
T Consensus 183 ----------tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 183 ----------DSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp ----------CCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred ----------cCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence 444555666666665554 44332 12233558886654321 11 12345777889999999
Q ss_pred EEEEECCCeEEEEECCCCeeEEEee
Q 005123 327 VLTASKDQIIKLYDIRAMKELESFR 351 (713)
Q Consensus 327 Latgs~Dg~I~IwDl~t~~~l~~~~ 351 (713)
++.+-.||.-++|+ +++.+..-.
T Consensus 252 ~iiakrdG~s~lF~--nGk~in~p~ 274 (313)
T d2hu7a1 252 AVVARREGRSAVFI--DGERVEAPQ 274 (313)
T ss_dssp EEEEEETTEEEEEE--TTEEECCCS
T ss_pred EEEEecCCchheee--cceEecCCC
Confidence 99999999999987 466554433
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.19 Score=51.06 Aligned_cols=177 Identities=8% Similarity=-0.028 Sum_probs=103.6
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCC-----------CCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~-----------t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vw 213 (713)
...+.++++....+|++|+.++ ++|..++ ......... -..|..++|+. +.|++.. ++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~--d~l~v~~-~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG--DQVLVST-RNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET--TEEEEEE-SSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC--CEEEEEe-CCCEEEE
Confidence 4567788898888898888775 6666521 111222222 23688999974 4555554 4668888
Q ss_pred EcCCCceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEc-----cCCCceEEEEEcCCCCEEEEE
Q 005123 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSG 288 (713)
Q Consensus 214 dl~~~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~-----~h~~~V~sl~~spdg~~L~sg 288 (713)
+...-............+..+.+++ ..++....++.+.++++.+++...... .-...+.+++|++.++.++++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred EeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence 8776554444444566778888766 467778889999999998875433221 123456667776666666655
Q ss_pred eCCCcEEEE-ECCCCceEEEEccCCCCeEEEEEcCCCCEEEEE
Q 005123 289 GKDSLVKLW-DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (713)
Q Consensus 289 s~Dg~I~Iw-Dl~t~~~~~~~~~h~~~I~si~fspdg~~Latg 330 (713)
..+. +.+- ++.....+..-......|.+|.|-.+..++++-
T Consensus 189 ~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 189 RNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 3221 1111 111111110001134568899998776666544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.65 E-value=0.11 Score=52.46 Aligned_cols=193 Identities=10% Similarity=0.141 Sum_probs=114.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEcc----CC--CEEEEEe-CC---CcEEEEEcCCC-ceeee
Q 005123 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH----ND--NWMVSGD-DG---GAIKYWQNNMN-NVKAN 223 (713)
Q Consensus 155 dg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~sp----dg--~~L~sgs-~D---G~I~vwdl~~~-~~~~~ 223 (713)
+..+|+....++-|++||++ ++.+..+. .+.++.|..-. ++ ..|++++ ++ ..|.+|.+... ..+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45567766777779999986 66666554 35666665432 22 2344444 32 35778877532 22222
Q ss_pred ecc-------CCCCeeEEEE--ecC-CC-EEEEEECCCeEEEEEcC---CC----eeEEEEccCCCceEEEEEcCCCCEE
Q 005123 224 KSA-------HKESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSLL 285 (713)
Q Consensus 224 ~~~-------~~~~V~~l~f--s~d-g~-~Las~s~Dg~I~iwDl~---~~----~~~~~l~~h~~~V~sl~~spdg~~L 285 (713)
+.. ....+..+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. ....+..+.++.....|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 221 1234667777 443 44 46667778999888763 22 2344444 45678999999998999
Q ss_pred EEEeCCCcEEEEECCC-----CceEEEEcc--CCCCeEEEEEcC--CCC-EEEEEE-CCCeEEEEECCCC-eeEEEee
Q 005123 286 VSGGKDSLVKLWDAKS-----GRELCSFHG--HKNMVLCVKWNQ--NGN-WVLTAS-KDQIIKLYDIRAM-KELESFR 351 (713)
Q Consensus 286 ~sgs~Dg~I~IwDl~t-----~~~~~~~~~--h~~~I~si~fsp--dg~-~Latgs-~Dg~I~IwDl~t~-~~l~~~~ 351 (713)
+++-++..|..++.+- ...+....+ ....+..|++-. +++ ||++.+ .+++..|||..+. +.+..|+
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 9998887777776642 122222221 345677777543 322 555444 6788999998763 4454443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.097 Score=53.37 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=102.7
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---------CceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc
Q 005123 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (713)
Q Consensus 187 ~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~---------~~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl 257 (713)
....-++++....+|++|+.++ ++|..+.. ..........-..|..++|+.| .|++. .++.+..++.
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~ 112 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL 112 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence 3455678887777888888765 56665321 0000111111236888999754 45554 4557888888
Q ss_pred CCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEc-----cCCCCeEEEEEcCCCCEEEEEEC
Q 005123 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASK 332 (713)
Q Consensus 258 ~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~-----~h~~~I~si~fspdg~~Latgs~ 332 (713)
.+-............+..+.+++. .++....++.+.++++.+++...... .....+.+++|++.|+.++++..
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g 190 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN 190 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence 765555554445667888888864 56777788999999999876433221 12355777777777777766643
Q ss_pred CCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 005123 333 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (713)
Q Consensus 333 Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasg 373 (713)
++.-.--++.....+.........|.+|.|-. +..++++-
T Consensus 191 ~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~-~~~F~vvy 230 (381)
T d1xipa_ 191 GEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 230 (381)
T ss_dssp TEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred CceeeccCCCCccccCCCcCCCcceeEEEEec-CceEEEEE
Confidence 32111112211111111112334688899975 44455444
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=96.29 E-value=0.051 Score=52.68 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=108.1
Q ss_pred ceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 005123 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (713)
Q Consensus 146 ~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~ 225 (713)
.|..|+.. ..+.++-. ||+|+.|-..+...+-.-......|..|+.- ..+.+.- .|+.+..|............
T Consensus 27 ~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~al-~dg~v~~wG~~~~gq~~~~~ 100 (273)
T d1jtdb_ 27 GVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-KDGEVIAWGGNEDGQTTVPA 100 (273)
T ss_dssp SEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEEE-ETTEEEEEECCTTSTTCCCG
T ss_pred CcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceeee-eeeeeeccCCCcceeecccc
Confidence 35666553 22333334 8899999755432221112223445555542 2232222 47999999765432222112
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 005123 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (713)
Q Consensus 226 ~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~ 305 (713)
.....+..++.... ..+. -.|+++..|.................|..++-. ...+ ....++.++.|-......+
T Consensus 101 ~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~~~~~g~~~~~G~~~~g~~ 174 (273)
T d1jtdb_ 101 EARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTA-LAVKNGGVIAWGDNYFGQT 174 (273)
T ss_dssp GGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEE-EEEETTEEEEEECCTTSTT
T ss_pred ccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceee-eeecccceeEeecccCCcc
Confidence 22334555544322 2222 248899999754432222222223345554432 2223 3345788999976543222
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 306 ~~~~~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.........|..|+... .+.+.-. ||.|+.|=....-.+..-......|..|+-.. ...++. . ||.|+.|=..
T Consensus 175 ~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~--~~~~~l-~-~g~v~~WG~~ 247 (273)
T d1jtdb_ 175 TVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGE--WYSLAL-K-NGKVIAWGSS 247 (273)
T ss_dssp SCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECS--SCEEEE-E-TTEEEEESTT
T ss_pred cccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCc--ceEEEE-E-CCEEEEECCC
Confidence 22222345677776542 3333333 89999996543222211111224566776532 333333 3 8999999543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.15 E-value=0.66 Score=48.08 Aligned_cols=105 Identities=10% Similarity=0.202 Sum_probs=61.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec--------cCCCCeeEEEEecC---CCEEEEEEC------
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------AHKESVRDLSFCRT---DLKFCSCSD------ 248 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~~~~~~~~--------~~~~~V~~l~fs~d---g~~Las~s~------ 248 (713)
-..-++|+|.+|+++|++--.+|.|++++..++....... .......+|+|+++ ..+|..+..
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 3567799999999988776557999999877765433221 12345678999874 344443211
Q ss_pred -C----Ce--EEEEEcCCCe-------eE-EEEc-cCCCceEEEEEcCCCCEEEEEeC
Q 005123 249 -D----TT--VKVWDFARCQ-------EE-RSLT-GHGWDVKSVDWHPTKSLLVSGGK 290 (713)
Q Consensus 249 -D----g~--I~iwDl~~~~-------~~-~~l~-~h~~~V~sl~~spdg~~L~sgs~ 290 (713)
+ +. |+.+...... .+ ..+. ........|.|.+|+.++++.++
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 3333332211 01 1111 12234678999999987776654
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.14 E-value=0.71 Score=45.61 Aligned_cols=227 Identities=10% Similarity=0.075 Sum_probs=131.5
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCc----eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEE---cCC------Cce
Q 005123 154 PTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNM------NNV 220 (713)
Q Consensus 154 pdg~~Latgs~dg~V~Iwd~~t~~----~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~vwd---l~~------~~~ 220 (713)
++...+++-+.+|.|+--++.+.+ .-..++ ..+.+..+........|+.-+..|.++... +.. +..
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 456778888999998866533210 000111 244565655555566666667778776554 332 222
Q ss_pred eeeec--cCCCCeeEEEEec---CCCEEEEEECCCeEEEEEcCCCe--------eEEEEccCCCceEEEEEcCCCCEEEE
Q 005123 221 KANKS--AHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARCQ--------EERSLTGHGWDVKSVDWHPTKSLLVS 287 (713)
Q Consensus 221 ~~~~~--~~~~~V~~l~fs~---dg~~Las~s~Dg~I~iwDl~~~~--------~~~~l~~h~~~V~sl~~spdg~~L~s 287 (713)
+..+. .....|..+.... +..+|+..+..|.++..++.... ....+. ..+.+..+.+..+...++.
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~l 160 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCCCeEEEE
Confidence 22111 2234444444332 35789999999999999874321 112222 4456777777777788999
Q ss_pred EeCCCcEEEEECCCCce-------EE--EEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCC-------eeEEEe
Q 005123 288 GGKDSLVKLWDAKSGRE-------LC--SFHGHKNMVLC-VKWNQNGNWVLTASKDQIIKLYDIRAM-------KELESF 350 (713)
Q Consensus 288 gs~Dg~I~IwDl~t~~~-------~~--~~~~h~~~I~s-i~fspdg~~Latgs~Dg~I~IwDl~t~-------~~l~~~ 350 (713)
++.+|.+..|+...-+. +. .+. ....|.+ +.+..++..|++.+..|..+...+... +-+..+
T Consensus 161 ~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~ 239 (323)
T d1wp5a_ 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeecccchhhccccccccccccc
Confidence 99999999998754221 22 222 2334444 445567788999999998888765432 112222
Q ss_pred e---cCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 351 R---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 351 ~---~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
+ .....|..+.... +...|+..+..|.+.-.++
T Consensus 240 k~~k~~~~~v~~~~~~~-~~d~l~l~T~~g~~~r~~~ 275 (323)
T d1wp5a_ 240 RELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp CCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEG
T ss_pred cccccccceeeeeEecC-CCCEEEEEeCCCEEEEEEh
Confidence 2 1223455555544 4556666777777765555
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.06 E-value=0.71 Score=47.84 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=62.7
Q ss_pred CCceEEEEEccCCCEEEEEECCCcEEEEeCCCCceEEEEec--------cCCCEEEEEEccC---CCEEEEEeC------
Q 005123 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHN---DNWMVSGDD------ 206 (713)
Q Consensus 144 ~~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t~~~~~~l~~--------h~~~V~sl~~spd---g~~L~sgs~------ 206 (713)
-+.-++|+|.+|+++|++--.+|.|++++..+++....... -......|+|+|+ ..+|+.+..
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 45778999999999887765689999999877765433321 1356788999985 345544311
Q ss_pred -C----Cc--EEEEEcCCCce--------eeee-ccCCCCeeEEEEecCCCEEEEEEC
Q 005123 207 -G----GA--IKYWQNNMNNV--------KANK-SAHKESVRDLSFCRTDLKFCSCSD 248 (713)
Q Consensus 207 -D----G~--I~vwdl~~~~~--------~~~~-~~~~~~V~~l~fs~dg~~Las~s~ 248 (713)
+ .. |..+..+.... +..+ .........|.|.+|+.++++.++
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 12 22233222210 1111 112234578999999987776654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.93 E-value=0.61 Score=42.76 Aligned_cols=211 Identities=11% Similarity=0.086 Sum_probs=103.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCeeEEEEecCC-CEEEEE------ECCCeEEEEEcCCCeeEEEEccC
Q 005123 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSC------SDDTTVKVWDFARCQEERSLTGH 269 (713)
Q Consensus 197 dg~~L~sgs~DG~I~vwdl~~~~~~~~~~~~~~~V~~l~fs~dg-~~Las~------s~Dg~I~iwDl~~~~~~~~l~~h 269 (713)
+.++|+++...|.+.++-+..++.++.. ++.|.....-..+ .++..+ -+-..|.+-++...-....+...
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 4457788888999999988887765543 2333322211111 111111 01123444444322223333333
Q ss_pred C-CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEcc-CCCCeEE--------EEEc-CCCCEEEEEEC-CCeEE
Q 005123 270 G-WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLC--------VKWN-QNGNWVLTASK-DQIIK 337 (713)
Q Consensus 270 ~-~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~~~~~~-h~~~I~s--------i~fs-pdg~~Latgs~-Dg~I~ 337 (713)
. -.|.+++.. +.+.+++|+......+|-++.|+......- .-+.|+. +.+- .+..-|+++.- .|.++
T Consensus 102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence 3 456677765 556778888888888998887764332210 1122333 2221 12222333333 44555
Q ss_pred EEECCCCeeEEEeecCCCCeEEEEEeCCCCCEEEEEECC-C--cEEEEEcCCCCceEE------EecccCCCeEEEEEcC
Q 005123 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-G--SIFHWLVGHETPQVE------IHNVHDNTVWDLAWHP 408 (713)
Q Consensus 338 IwDl~t~~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~D-G--~I~Iwd~~~~~~~~~------~~~~h~~~V~~l~~sp 408 (713)
|++-.. +.++.....+ +.+. ++.-+. | ...-+|+++++-... +..-....|+-+-+.|
T Consensus 181 i~tpke-----------GS~~~ay~~~-gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 181 VFDSGE-----------GSFSSASISP-GMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp EECCSS-----------EEEEEEEECT-TSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred EecCCC-----------CcccceeEcc-Ccee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence 555444 4444444444 2222 222111 1 111335543331111 1111234577777899
Q ss_pred CCcE-EEE-eCCcEEEEe
Q 005123 409 IGYL-LCS-NDHTTKFWC 424 (713)
Q Consensus 409 dg~~-laS-~Dg~v~iWd 424 (713)
++.+ +.+ .||.-++|.
T Consensus 248 dd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFI 265 (313)
T ss_dssp TSCEEEEEEETTEEEEEE
T ss_pred CCcEEEEEecCCchheee
Confidence 9966 444 999999996
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.28 E-value=1.6 Score=42.98 Aligned_cols=188 Identities=9% Similarity=0.054 Sum_probs=114.5
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCC----ceeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEc---C------CCee
Q 005123 196 HNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF---A------RCQE 262 (713)
Q Consensus 196 pdg~~L~sgs~DG~I~vwdl~~~----~~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl---~------~~~~ 262 (713)
++...+++-+.+|.|+--++++. ..-..+ ...+.+..+..+.....|+.-++.|.++...+ . .+..
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~-k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM-KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC-CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcc-cCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 46677888899999986654321 100111 23456667766767777777788887766554 2 1333
Q ss_pred EEEEc--cCCCceE-EEEEcC--CCCEEEEEeCCCcEEEEECCCCc------eE--EEEccCCCCeEEEEEcCCCCEEEE
Q 005123 263 ERSLT--GHGWDVK-SVDWHP--TKSLLVSGGKDSLVKLWDAKSGR------EL--CSFHGHKNMVLCVKWNQNGNWVLT 329 (713)
Q Consensus 263 ~~~l~--~h~~~V~-sl~~sp--dg~~L~sgs~Dg~I~IwDl~t~~------~~--~~~~~h~~~I~si~fspdg~~Lat 329 (713)
+..+. .....|. .+.... +..+|+..+..|.++..++.... .+ ..+. ....+..+.+..+...++.
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~l 160 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCCCeEEEE
Confidence 22211 1223343 333332 35689999999999999874321 11 1222 4456777777777788999
Q ss_pred EECCCeEEEEECCCCee-------EEEeecC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 330 ASKDQIIKLYDIRAMKE-------LESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 330 gs~Dg~I~IwDl~t~~~-------l~~~~~h-~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
++.+|.+..|+...-.. +..++.. .+.|.+..+...++..|++.+..|..+.-.+.
T Consensus 161 ~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~ 224 (323)
T d1wp5a_ 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccch
Confidence 99999999998753221 2223322 34455544443366788899999988887653
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.08 Score=50.84 Aligned_cols=175 Identities=11% Similarity=0.086 Sum_probs=79.4
Q ss_pred CcEEEEeCCCCceEEEEecc--CCCEEEEEEccCCCEEEEEeCCCc-----EEEEEcCCCceeeeeccCCCCe-eEEEEe
Q 005123 166 GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGA-----IKYWQNNMNNVKANKSAHKESV-RDLSFC 237 (713)
Q Consensus 166 g~V~Iwd~~t~~~~~~l~~h--~~~V~sl~~spdg~~L~sgs~DG~-----I~vwdl~~~~~~~~~~~~~~~V-~~l~fs 237 (713)
..+.+||..+.+....-... ...-.++.+ +++.++.++.++. +..+|..+.............. .++...
T Consensus 70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 147 (288)
T d1zgka1 70 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 147 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred chhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee
Confidence 45788887766544321111 111122222 5666666544433 3446665554332211111111 112222
Q ss_pred cCCCEEEEEECC-----CeEEEEEcCCCeeEEEEcc-CCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEE
Q 005123 238 RTDLKFCSCSDD-----TTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELC 306 (713)
Q Consensus 238 ~dg~~Las~s~D-----g~I~iwDl~~~~~~~~l~~-h~~~V~sl~~spdg~~L~sgs~D-----g~I~IwDl~t~~~~~ 306 (713)
++..++.++.+ ..+..||..+.+....-.. ......++... ++++++.++.+ ..+.++|..+.+...
T Consensus 148 -~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 225 (288)
T d1zgka1 148 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF 225 (288)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred -eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeec
Confidence 44444444432 4578888876543322111 11111223332 34556665443 346778877654332
Q ss_pred EEccCCCCe-EEEEEcCCCCEEEEEECCC-----eEEEEECCCCe
Q 005123 307 SFHGHKNMV-LCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMK 345 (713)
Q Consensus 307 ~~~~h~~~I-~si~fspdg~~Latgs~Dg-----~I~IwDl~t~~ 345 (713)
.-....... .+++. -++++++.|+.++ .|.+||+.+.+
T Consensus 226 ~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 226 VAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 211111111 12222 2677777776544 47888988643
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=2.3 Score=42.19 Aligned_cols=234 Identities=12% Similarity=0.017 Sum_probs=129.1
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-c-----------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEE
Q 005123 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-N-----------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253 (713)
Q Consensus 186 ~~~V~sl~~spdg~~L~sgs~DG~I~vwdl~~~-~-----------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~ 253 (713)
...|..|+.. ..+.++-..||.|..|=.... . .+.........|..++. .....+....||.|.
T Consensus 46 ~~~i~~ia~G--~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~--g~~~~~~~~~~g~v~ 121 (401)
T d1a12a_ 46 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVF 121 (401)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCCeEEEEeC--CCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecc--cccceeeccccccce
Confidence 4567777764 456666788899999953321 1 11111122344555554 445667778899999
Q ss_pred EEEcCCC-------------eeEEEEccCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE---------------
Q 005123 254 VWDFARC-------------QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--------------- 305 (713)
Q Consensus 254 iwDl~~~-------------~~~~~l~~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~~~--------------- 305 (713)
.|-.... ............|..|+.. ....+....++.++.|-......+
T Consensus 122 ~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~ 199 (401)
T d1a12a_ 122 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 199 (401)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred eccccccccccccccCCccccceeeeeccCCceeEEEec--ccceeeeecCCcccccccCCccccCCCCccccccCCccc
Confidence 9964211 1111222334456666654 445566677899999965431100
Q ss_pred -------EEEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----------eEEE----eecCCCCeE
Q 005123 306 -------CSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----------ELES----FRGHRKDVT 358 (713)
Q Consensus 306 -------~~~~------~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~----------~l~~----~~~h~~~V~ 358 (713)
..+. .....|..++. .....++-..++.|+.|...... .+.. +......+.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~i~~v~~--g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 277 (401)
T d1a12a_ 200 LERLLVPKCVMLKSRGSRGHVRFQDAFC--GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 277 (401)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEE--ETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccceeeccccCCCCCceEEEEEe--cCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEE
Confidence 0000 01123444443 33456666788999999754210 1111 111223344
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcCCCC--------c---eEEEecccCCCeEEEEEcCCCcEEEEeCCcEEEEecCC
Q 005123 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDLAWHPIGYLLCSNDHTTKFWCRNR 427 (713)
Q Consensus 359 sl~fsp~~~~~lasgs~DG~I~Iwd~~~~~--------~---~~~~~~~h~~~V~~l~~spdg~~laS~Dg~v~iWd~~~ 427 (713)
.++- +....++...+|.|+.|...... . .-..+ .....|..|+.-.+..++.+.||.|..|=.+.
T Consensus 278 ~i~~---g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i-~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~ 353 (401)
T d1a12a_ 278 GFSG---GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI-SRLPAVSSVACGASVGYAVTKDGRVFAWGMGT 353 (401)
T ss_dssp EEEE---CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC-CSSSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEee---eccceeeeccCCCEEEecccccCccCCCcccccccCCEEc-CCCCCeEEEEeeCCEEEEEeCCCeEEEEecCC
Confidence 4443 56677788889999999753211 1 11112 12346888877666666677999999998776
Q ss_pred CCCc
Q 005123 428 PGDT 431 (713)
Q Consensus 428 ~~~~ 431 (713)
.+..
T Consensus 354 ~GQL 357 (401)
T d1a12a_ 354 NYQL 357 (401)
T ss_dssp TSTT
T ss_pred CCCC
Confidence 6553
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=3.5 Score=40.78 Aligned_cols=228 Identities=9% Similarity=0.040 Sum_probs=122.0
Q ss_pred CceEEEEEccCCCEEEEEECCCcEEEEeCCC-Cc-----------eEEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 005123 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FN-----------FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (713)
Q Consensus 145 ~~V~~v~~spdg~~Latgs~dg~V~Iwd~~t-~~-----------~~~~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v 212 (713)
..|..|+.. ..+.++-+.||.|+.|-... +. .+.........|..|+.. ....+.-..||.|.+
T Consensus 47 ~~i~~ia~G--~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~~~~~g~v~~ 122 (401)
T d1a12a_ 47 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG--DSHTAALTDDGRVFL 122 (401)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeC--CCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeeccc--ccceeecccccccee
Confidence 347667654 34666778899999995322 11 111222234456666553 456667778899999
Q ss_pred EEcCCCc-------------eeeeeccCCCCeeEEEEecCCCEEEEEECCCeEEEEEcCCCeeE----------------
Q 005123 213 WQNNMNN-------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---------------- 263 (713)
Q Consensus 213 wdl~~~~-------------~~~~~~~~~~~V~~l~fs~dg~~Las~s~Dg~I~iwDl~~~~~~---------------- 263 (713)
|-..... ...........|..++. .....+....++.++.|-......+
T Consensus 123 wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~ 200 (401)
T d1a12a_ 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGL 200 (401)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGH
T ss_pred ccccccccccccccCCccccceeeeeccCCceeEEEe--cccceeeeecCCcccccccCCccccCCCCccccccCCcccc
Confidence 9532111 11111223334555544 3445566678899999975331100
Q ss_pred ------EEEc------cCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------eEEEE----ccCCCCeEE
Q 005123 264 ------RSLT------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR----------ELCSF----HGHKNMVLC 317 (713)
Q Consensus 264 ------~~l~------~h~~~V~sl~~spdg~~L~sgs~Dg~I~IwDl~t~~----------~~~~~----~~h~~~I~s 317 (713)
..+. .....|..++.. ....+.-..|+.|..|...... ..... ......+.
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~i~~v~~g--~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~- 277 (401)
T d1a12a_ 201 ERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV- 277 (401)
T ss_dssp HHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE-
T ss_pred ccccccceeeccccCCCCCceEEEEEec--CCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEE-
Confidence 0000 011235555544 3455566778999999754311 11111 11112233
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC-----------eeEEEeecCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcC
Q 005123 318 VKWNQNGNWVLTASKDQIIKLYDIRAM-----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (713)
Q Consensus 318 i~fspdg~~Latgs~Dg~I~IwDl~t~-----------~~l~~~~~h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~~ 385 (713)
.+.......++...++.|+.|..... ..+-........|..|+. +....++...||.|+.|=.+
T Consensus 278 -~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~~i~~Is~---G~~hs~alt~dG~v~~WG~n 352 (401)
T d1a12a_ 278 -GFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVAC---GASVGYAVTKDGRVFAWGMG 352 (401)
T ss_dssp -EEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEE---CSSEEEEEETTSCEEEEECC
T ss_pred -EEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCCCeEEEEe---eCCEEEEEeCCCeEEEEecC
Confidence 33335566777888999999975321 112122222345777765 45666677899999999543
|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: DNA gyrase A C-terminal domain species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=87.87 E-value=12 Score=35.76 Aligned_cols=225 Identities=8% Similarity=0.102 Sum_probs=127.4
Q ss_pred CEEEEEECCCcEEEEeCCCCce-------EE--EEeccCCCEEEEEEccCCCEEEEEeCCCcEEE---EEcCCCc-----
Q 005123 157 RRLITGSQSGEFTLWNGQSFNF-------EM--ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY---WQNNMNN----- 219 (713)
Q Consensus 157 ~~Latgs~dg~V~Iwd~~t~~~-------~~--~l~~h~~~V~sl~~spdg~~L~sgs~DG~I~v---wdl~~~~----- 219 (713)
+.+++.+.+|.|+--+..+.+. +. .+.. .+.+..+.-....+.|+.-+..|.+.. |++....
T Consensus 2 dvvv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~G~~~~i~~~~ip~~~~~~~G 80 (304)
T d1suua_ 2 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 80 (304)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEECCCeEEEeeHHHHhhccCCCCCcccccccC-CCEEEEEEEecCCCeEEEEechHhhcChhhhhcccccccccc
Confidence 3578889999999887554332 11 1233 234444444445566666666776654 3433221
Q ss_pred -eeeee--ccCCCCeeEEEEe---cCCCEEEEEECCCeEEEEEcCCCee-------EEEEccCCCceEEEEEcCCCCEEE
Q 005123 220 -VKANK--SAHKESVRDLSFC---RTDLKFCSCSDDTTVKVWDFARCQE-------ERSLTGHGWDVKSVDWHPTKSLLV 286 (713)
Q Consensus 220 -~~~~~--~~~~~~V~~l~fs---~dg~~Las~s~Dg~I~iwDl~~~~~-------~~~l~~h~~~V~sl~~spdg~~L~ 286 (713)
.+..+ ....+.|..+... ....+|+.++.+|.|+-.++..... ...+. ..+.+..+.....+..++
T Consensus 81 ~~i~~l~~l~~~e~i~~~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~~~~~~~a~kL~-~~D~lv~v~~~~~~~~v~ 159 (304)
T d1suua_ 81 QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVFKDEKVI 159 (304)
T ss_dssp CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEECTTCEEE
T ss_pred cccceeeeeccccccccccccccccccceEEEEEehhhhhhcccchhhccccccceeeccc-chhhccccccccccceeE
Confidence 11111 1123444444332 2456789999999999988754321 11122 334566666666677888
Q ss_pred EEeCCCcEEEEECCCCce-------EEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------eEEEee
Q 005123 287 SGGKDSLVKLWDAKSGRE-------LCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELESFR 351 (713)
Q Consensus 287 sgs~Dg~I~IwDl~t~~~-------~~~~~-~h~~~I~si~fspdg~~Latgs~Dg~I~IwDl~t~~-------~l~~~~ 351 (713)
..+.+|.+..++...-.. +..++ .....+..+....++.+|++.+.+|.++...+.... -+..++
T Consensus 160 ~~t~~G~~lrf~~~~v~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~~k 239 (304)
T d1suua_ 160 CLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYK 239 (304)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSC
T ss_pred eeccccceeeeccccccccCccccceeeecccccccceeeeeccCCceEEEEecCCceEEccchhhhhhcccccccceee
Confidence 889999999998764221 11111 133456666667778899999999999998875422 122222
Q ss_pred c---CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc
Q 005123 352 G---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (713)
Q Consensus 352 ~---h~~~V~sl~fsp~~~~~lasgs~DG~I~Iwd~ 384 (713)
. ..+.|.++.... ....|+..+.+|.+.-..+
T Consensus 240 ~~~~~~~~vv~~~~v~-~~d~i~l~T~~G~~~r~~~ 274 (304)
T d1suua_ 240 KSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVA 274 (304)
T ss_dssp TTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEG
T ss_pred ccccCCCcEEEEEEeC-CCCEEEEEeCCCEEEEEEh
Confidence 1 223454443333 3445666677777665554
|
| >d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome c superfamily: Cytochrome c family: monodomain cytochrome c domain: Cytochrome c2 species: Rhodopseudomonas viridis [TaxId: 1079]
Probab=84.45 E-value=0.26 Score=40.44 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCc-ccCCCCCCCCCCCCccc
Q 005123 454 RMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPLS 492 (713)
Q Consensus 454 ~~~~~~l~~~~~~rag~~~~gl-gr~~gtv~Gy~~~~al~ 492 (713)
+..||.+......+.||.+.++ +|..|++.||.|+++|.
T Consensus 13 C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~ 52 (107)
T d1co6a_ 13 CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANK 52 (107)
T ss_dssp HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHH
T ss_pred ccccCccCCCCCCCccccccCccCcccccccccccCHHHh
Confidence 4559998888788999999999 99999999999998885
|
| >d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome c superfamily: Cytochrome c family: monodomain cytochrome c domain: Cytochrome c2 species: Rhodospirillum centenum [TaxId: 34018]
Probab=81.65 E-value=0.37 Score=40.21 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=33.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCc-ccCCCCCCCCCCCCcc
Q 005123 454 RMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPL 491 (713)
Q Consensus 454 ~~~~~~l~~~~~~rag~~~~gl-gr~~gtv~Gy~~~~al 491 (713)
+..||.+......+.||.+.++ +|..|++.||.|+.++
T Consensus 13 C~~CH~v~~~~~~~iGP~L~gi~~R~~g~~~g~~Ys~~~ 51 (118)
T d1jdla_ 13 CMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAIN 51 (118)
T ss_dssp TTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHH
T ss_pred HHHhCCcCCCCCCCCCCcccCccCcccCccccccccHHH
Confidence 5669988777778999999999 9999999999998543
|