Citrus Sinensis ID: 005125
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MAH1 | 699 | TPR repeat-containing thi | no | no | 0.654 | 0.668 | 0.437 | 1e-109 | |
| Q9SIN1 | 691 | Inactive TPR repeat-conta | no | no | 0.636 | 0.657 | 0.438 | 1e-105 | |
| F4IXE4 | 730 | TPR repeat-containing thi | no | no | 0.636 | 0.621 | 0.419 | 5e-98 | |
| Q84JR9 | 682 | TPR repeat-containing thi | no | no | 0.657 | 0.687 | 0.415 | 8e-98 | |
| Q9QYI3 | 494 | DnaJ homolog subfamily C | yes | no | 0.471 | 0.680 | 0.276 | 1e-20 | |
| Q99615 | 494 | DnaJ homolog subfamily C | yes | no | 0.471 | 0.680 | 0.268 | 1e-19 | |
| Q5R8D8 | 494 | DnaJ homolog subfamily C | yes | no | 0.471 | 0.680 | 0.265 | 2e-18 | |
| Q54IP0 | 539 | DnaJ homolog subfamily C | yes | no | 0.468 | 0.619 | 0.237 | 3e-17 | |
| Q9HGM9 | 476 | DnaJ homolog subfamily C | yes | no | 0.429 | 0.642 | 0.258 | 7e-12 | |
| Q8BJU0 | 315 | Small glutamine-rich tetr | no | no | 0.143 | 0.323 | 0.377 | 1e-11 |
| >sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/489 (43%), Positives = 302/489 (61%), Gaps = 22/489 (4%)
Query: 244 SGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL 303
+GE P ++ D EE+K +GNE Y K F +AL LYDRAIA++ + A YRSN++AAL
Sbjct: 212 TGETPIWKKAILGSDSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAAL 271
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
IGL R EA+ EC++A+R DP Y RAHHRLA+L RLG+ A H ++ ++
Sbjct: 272 IGLSRIGEAVKECEDAVRSDPNYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQ 331
Query: 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423
K EA+ KHL KC +AR + W +L E I GAD +PQ++ + EA L+L R +A
Sbjct: 332 KLEAVEKHLIKCVDARRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRLDDAQ 391
Query: 424 DSYNKSPKF------CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477
+ PK C + T+ G+A AY+ V+AQ+ +A GRFE+AV A+ A+QID
Sbjct: 392 SKLLEVPKVEPFPVSCSQ--TRFSGMACEAYIYFVKAQIEMALGRFENAVMAAEKASQID 449
Query: 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537
P EV +A AR RGN L+K+ +Y EA AY+EGL + N++L CNRAAC
Sbjct: 450 PRCNEVAMLHNTVTLVARARARGNDLYKSERYTEASSAYAEGLRLDPCNAILYCNRAACW 509
Query: 538 SKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEV 585
KLG +E+++EDC AL PSY+K R AA+ DYE LIRE+P ++EV
Sbjct: 510 FKLGMWERSIEDCNQALRYQPSYTKPLLRRAASNSKMERWGAAVSDYEALIRELPHDKEV 569
Query: 586 GRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEH--K 643
+LF AQV LKK RGE+V +M+FG + + S E+F+ + PG++V+ F + ++H K
Sbjct: 570 AESLFHAQVALKKSRGEEVLNMEFGGEVEEIYSLEQFKSAMNLPGVSVIHFSTASDHQCK 629
Query: 644 QVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCEL 703
Q+ ++ +C R+PS++FLKV+++ P I +E V +P KIYKNGSRVKEI E+
Sbjct: 630 QISPFVDSLCTRYPSIHFLKVDIDKCPSIGNAENVRVVPTVKIYKNGSRVKEIVCPSKEV 689
Query: 704 LEKSVKLYS 712
LE SV+ YS
Sbjct: 690 LEYSVRHYS 698
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Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/477 (43%), Positives = 295/477 (61%), Gaps = 23/477 (4%)
Query: 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALV 314
N +PEELK MGN+ Y + F +AL+LYDRAI I+ A YRSN++AAL L R EA+
Sbjct: 216 NGENPEELKRMGNDMYRRGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVK 275
Query: 315 ECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK 374
EC EA+RIDP Y RAH RLA LY RLGEAE A H S +Q D+ + + L KHL +
Sbjct: 276 ECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRR 335
Query: 375 CNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434
C EAR++ W +KET I+ GADS+PQ+ A +AEA LRL++ +++ + P+
Sbjct: 336 CWEARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDH 395
Query: 435 EYYT----KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
Y++ KLFG+ AY+L ++AQV +A GRFE+AV A+ AA +D N EV+ +
Sbjct: 396 HYHSQPQVKLFGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNV 455
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC 550
K + AR RGN LF + ++ EAC AY +GL+ + NSVL CNRAAC KLG +EK+VEDC
Sbjct: 456 KMVVRARTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDC 515
Query: 551 TAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598
AL PSY KA R E A++DYE L RE+PG+ EV +L A+ L
Sbjct: 516 NHALKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVL-M 574
Query: 599 QRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHK--QVLQLMEQVCKRF 656
R ++ K + F + + VS+ ++F+ V PG++V F S + + ++ + +C R+
Sbjct: 575 NRSQESKSLGFNNEVEAVSTLDKFKKSVALPGVSVFHFKSSSNRQCEEISPFINTLCLRY 634
Query: 657 PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI--PGHQCELLEKSVKLY 711
P V+F V+VE+ +AK+E + +P FK+YKNG +VKE+ P HQ LE S+K +
Sbjct: 635 PLVHFFMVDVEESMALAKAESIRKVPTFKMYKNGDKVKEMVCPSHQ--FLEDSIKHF 689
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis thaliana GN=TTL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 198/472 (41%), Positives = 288/472 (61%), Gaps = 18/472 (3%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
+PEE+K GNE + K F +AL LYDRAI ++ S ATY SN++AAL LG+ EA+ EC+
Sbjct: 257 NPEEVKRFGNEMFRKGCFAEALKLYDRAIELSPSNATYHSNRAAALSSLGQIGEAVNECE 316
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377
AI++DP + RAHHRLA L RLG + A H + + + + KHL KC
Sbjct: 317 IAIKLDPNFARAHHRLASLLLRLGYVDNAGIHLYSVEEPLDPTVVKMLQQVDKHLNKCTY 376
Query: 378 ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK---FCL 434
AR W+ +L E I+ GADS+PQ+ +AEALL+L R +A PK F
Sbjct: 377 ARRRGEWSIVLTEVSAAIASGADSSPQLAMCKAEALLKLLRLDDAQRVLECVPKVEPFPA 436
Query: 435 EY-YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493
+ +T+ F + AY V++Q+ +A GRFE+AV TA+ A++IDP N EV K + +
Sbjct: 437 SFSHTRFFDMIAEAYTSFVKSQMELALGRFENAVVTAEKASKIDPQNNEVEILYKNVRLI 496
Query: 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
AR RGN L++ +Y EA AY+EGL+++ N+ LLC RA C K+G +E ++EDC A
Sbjct: 497 TRARDRGNDLYELERYTEARSAYAEGLKYDPSNATLLCYRADCFFKVGMWESSIEDCNHA 556
Query: 554 LIVMPSYSKARLE------------AAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRG 601
L+++PSY+K RL+ A+ DYE+L +E+P ++E+ +LF AQV LKK RG
Sbjct: 557 LLILPSYTKPRLQRAALYTKLERWAEAVSDYEILRKELPYDKEIAESLFHAQVALKKSRG 616
Query: 602 EDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLF--CSKAEHKQVLQLMEQVCKRFPSV 659
E V +M+FG + +SS E + +T PG++VV F S + K++ ++ +C R+PS+
Sbjct: 617 EVVLNMEFGGEVEEISSLEELKAALTRPGVSVVHFFRASDPQCKEISTFVDALCVRYPSL 676
Query: 660 NFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
+FLKVE+ P + +E V +P FKIYK G R+KEI E LEK+V+ Y
Sbjct: 677 HFLKVEIVKCPEVGNAERVRVVPTFKIYKLGIRMKEIVCPSKEALEKTVRHY 728
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Plays a role in the transmission of male gametophyte. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 207/498 (41%), Positives = 302/498 (60%), Gaps = 29/498 (5%)
Query: 237 GNIVKQPSGEFPQCISSLNKL-DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY 295
GNI++ G+ + ++ D EE+K GN Y K + +ALALYDRAI+++ Y
Sbjct: 189 GNIIRT-GGKVSHATKAAAEMSDSEEVKKAGNVMYRKGNYAEALALYDRAISLSPENPAY 247
Query: 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
RSN++AAL GR EA+ EC EA+R DP Y RAH RLA LY RLGEAE A H S
Sbjct: 248 RSNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSGQ 307
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
+Q D+ + + L KHL C EAR++ W ++ E I+ GADS+PQ+ A +AEA LR
Sbjct: 308 CPDQADLQRLQTLEKHLRLCTEARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLR 367
Query: 416 LQRHQEAHDSYNKSPKFCLEYY-----TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470
L + +++ + P+ L+++ KLFG+ AY+L V+AQV +A GRFE+A+
Sbjct: 368 LHQIKDSDLCISSIPR--LDHHHTQPPEKLFGIVCDAYVLCVQAQVDMALGRFENAIVKV 425
Query: 471 QDAAQID-PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529
+ A ID N+ EV+ + K +A AR RGN LF + +Y EA AY +GL+ +A+NSVL
Sbjct: 426 ERAMTIDHSNSPEVVSVLNNVKNVAKARTRGNELFSSGRYSEASVAYGDGLKLDAFNSVL 485
Query: 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIR 577
CNRAAC KLG +EK+V+DC AL + PSY+KA R E A++DYE+L +
Sbjct: 486 YCNRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRK 545
Query: 578 EIPGNEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFC 637
E+PG+ EV +L A+ L + E+ K + F + + VS+ ++F+ + PG++V F
Sbjct: 546 ELPGDSEVAESLQRARNAL-SNKSEEPKYLGFNNEVEEVSTLDKFKTATSLPGISVFHFK 604
Query: 638 SKA--EHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695
S + + + + + +C R+P V+F KV+VE+ +AK+E + IP FKIYK G +VKE
Sbjct: 605 SSSNRQSEAISPFVNTLCLRYPLVHFFKVDVEESLALAKAESIKKIPTFKIYKKGEKVKE 664
Query: 696 I--PGHQCELLEKSVKLY 711
+ P HQ LLE SV +
Sbjct: 665 MVCPSHQ--LLEDSVTHF 680
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 33/369 (8%)
Query: 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
K + E K GN Y K + +A Y +AI + + A+Y N++A L+ LGR EAL +
Sbjct: 25 KREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGD 84
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-----QKDIAKAEALHK 370
++++R+D + R H R + LG A A ++++ L + Q++ A A+ +
Sbjct: 85 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVME 144
Query: 371 HLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSP 430
+ E + + ++ + F A + + L+AE L L R+ EA
Sbjct: 145 YEKIAEVDFEKRDFRKVVFCMDRALEF-APACHRFKILKAECLAMLGRYPEA-------- 195
Query: 431 KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
+F ++ A L VR E AV+ A ++ P++++ + A
Sbjct: 196 QFVASDILRMDSTNADA--LYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNA 253
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGL----EHEAYNSVLLCNRAACRSKLGQYEKA 546
KA+ + + GN FK YK A Y+E L + N+ L CNR SKL Q E A
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDA 313
Query: 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQV 594
+EDCT A+ + +Y KA L E A++DYE + + +E + L AQ+
Sbjct: 314 IEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEK-VYQTEKTKEHKQLLKNAQL 372
Query: 595 QLKKQRGED 603
+LKK + +D
Sbjct: 373 ELKKSKRKD 381
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Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm. Mus musculus (taxid: 10090) |
| >sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 33/369 (8%)
Query: 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
K + E K GN Y K + +A Y +AI + A+Y N++A L+ LGR EAL +
Sbjct: 25 KREAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGD 84
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-----QKDIAKAEALHK 370
++++R+D + R H R + LG A A ++++ L + Q++ A A+ +
Sbjct: 85 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVME 144
Query: 371 HLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSP 430
+ E + + ++ + F A + + L+AE L L R+ EA +
Sbjct: 145 YEKIAETDFEKRDFRKVVFCMDRALEF-APACHRFKILKAECLAMLGRYPEAQSVASDIL 203
Query: 431 KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
+ + A L VR E AV+ A ++ P++++ + A
Sbjct: 204 RM----------DSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNA 253
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGL----EHEAYNSVLLCNRAACRSKLGQYEKA 546
KA+ + + GN FK YK A Y+E L + N+ L CNR SKL + + A
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313
Query: 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQV 594
+EDCT A+ + +Y KA L E A++DYE + + +E + L AQ+
Sbjct: 314 IEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEK-VYQTEKTKEHKQLLKNAQL 372
Query: 595 QLKKQRGED 603
+LKK + +D
Sbjct: 373 ELKKSKRKD 381
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Homo sapiens (taxid: 9606) |
| >sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 166/369 (44%), Gaps = 33/369 (8%)
Query: 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
K + E K GN Y K + +A Y +AI + A+Y N++A L+ LGR EAL +
Sbjct: 25 KREAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGD 84
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-----QKDIAKAEALHK 370
++++R+D + R R + LG A A ++++ L + Q++ A A+ +
Sbjct: 85 AQQSVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVME 144
Query: 371 HLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSP 430
+ E + + ++ + F A + + L+AE L L R+ EA +
Sbjct: 145 YEKIAETDFEKRDFRKVVFCMDRALEF-APACHRFKILKAECLAMLGRYPEAQSVASDIL 203
Query: 431 KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
+ + A L VR E AV+ A ++ P++++ + A
Sbjct: 204 RM----------DSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNA 253
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGL----EHEAYNSVLLCNRAACRSKLGQYEKA 546
KA+ + + GN FK YK A Y+E L + N+ L CNR SKL + + A
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313
Query: 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQV 594
+EDCT A+ + +Y KA L E A++DYE + + +E + L AQ+
Sbjct: 314 IEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEK-VYQTEKTKEHKQLLKSAQL 372
Query: 595 QLKKQRGED 603
+LKK + D
Sbjct: 373 ELKKSKRRD 381
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Pongo abelii (taxid: 9601) |
| >sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 178/374 (47%), Gaps = 40/374 (10%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAI-NSSKATYRSNKSAALIGLGRQI---EA 312
+D EE K GN + ++++ DA+ Y +AI + N + A Y N++AA + + + ++
Sbjct: 1 MDHEECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDS 60
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS-------HYKKSSSLANQKDIAKA 365
+ + +AI ++ + + + R + Y L + ++A S +++ L +K+ +
Sbjct: 61 IKDSLKAIELERSFIKGYTRASKAYIHLAQYDQAASIIVRGLVFDPRNNELLQEKN--QI 118
Query: 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425
+++ + ++ + + L + L + +NV+S + Q+ L+A L+ L+++ +A +
Sbjct: 119 DSIQRTISSLTKEKALSNPSSSLNQIENVLS-QSKYNTQLQVLKARVLIELKQYPQASNL 177
Query: 426 YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485
T L + L VR F A++ Q++ DP+ E
Sbjct: 178 MT----------TLLQEDSRNPEYLYVRGLSLYYQNNFPLALQHFQNSLTYDPDYSESRV 227
Query: 486 GVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL----EHEAYNSVLLCNRAACRSKLG 541
+K +++ S + GN F++ Y+ A +++E L + E NS L NRAA L
Sbjct: 228 ALKRLRSIESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLN 287
Query: 542 QYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589
+ +A+ DCT+A+ + P+Y KA + E A++DYE P N E+ R +
Sbjct: 288 RISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNI 347
Query: 590 FEAQVQLKKQRGED 603
EA++ KK +D
Sbjct: 348 KEAKIAHKKSLRKD 361
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 58/364 (15%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEALVECK 317
E+ K +GN Y + ++ +A+ Y AI + +S+ A Y SN++A + +G AL + K
Sbjct: 24 EKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAK 83
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK-KSSSLANQKDIAKAEALHKHLTKCN 376
++ RI P + R+ Y L +A + K K + LA N
Sbjct: 84 QSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLA-----------------LN 126
Query: 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE-AHDSYNKSPKFCLE 435
L+R D TQ +S+ A QVY Q + + R Q+ AHD +PK
Sbjct: 127 ALDRLQRRID--STTQPPMSWMYLKA-QVYIFQND----MDRAQKIAHDVLRLNPK---- 175
Query: 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495
L++R +V +G A+ Q+A ++DP+ K + + +
Sbjct: 176 ----------NVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLEN 225
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCT 551
+ +GN LF+ Y++A YSE L+ + N + L NRA +L + E+A+ D
Sbjct: 226 TKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSD 285
Query: 552 AALIVMPSYSK-----ARLEAAIQDYEMLIREIPGNEEVG-------RALFEAQVQLKKQ 599
AL + SY K A+ A++ +E +R++ E+ + L Q++LKK
Sbjct: 286 NALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKS 345
Query: 600 RGED 603
+ +D
Sbjct: 346 KRKD 349
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
E LK GNE FE A+ LY +AI +N + A Y N++AA LG + A+ +C+ A
Sbjct: 93 ERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERA 152
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
I IDP Y +A+ R+ + L + +AV++YKK+ L D K+
Sbjct: 153 IGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKS 198
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| 255545686 | 720 | heat shock protein binding protein, puta | 0.985 | 0.976 | 0.604 | 0.0 | |
| 302141943 | 685 | unnamed protein product [Vitis vinifera] | 0.932 | 0.970 | 0.568 | 0.0 | |
| 225459334 | 707 | PREDICTED: TPR repeat-containing thiored | 0.960 | 0.968 | 0.577 | 0.0 | |
| 356518485 | 698 | PREDICTED: TPR repeat-containing thiored | 0.948 | 0.968 | 0.527 | 0.0 | |
| 118488002 | 600 | unknown [Populus trichocarpa] | 0.817 | 0.971 | 0.565 | 0.0 | |
| 356552874 | 694 | PREDICTED: TPR repeat-containing thiored | 0.924 | 0.949 | 0.531 | 0.0 | |
| 357489549 | 676 | Small glutamine-rich tetratricopeptide r | 0.903 | 0.952 | 0.520 | 0.0 | |
| 359496360 | 710 | PREDICTED: TPR repeat-containing thiored | 0.957 | 0.961 | 0.497 | 0.0 | |
| 296090612 | 701 | unnamed protein product [Vitis vinifera] | 0.949 | 0.965 | 0.495 | 0.0 | |
| 224082142 | 464 | predicted protein [Populus trichocarpa] | 0.633 | 0.974 | 0.702 | 0.0 |
| >gi|255545686|ref|XP_002513903.1| heat shock protein binding protein, putative [Ricinus communis] gi|223546989|gb|EEF48486.1| heat shock protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/730 (60%), Positives = 532/730 (72%), Gaps = 27/730 (3%)
Query: 1 MAEVANCSMERG-LGCGFIGRIFSRRSFWSAKKSLPSPPTEGSNNDLKLPISDNHKKPPA 59
MAE+AN M+ LGCG +G IF R S K S+ S PT+ S + LK DN KK
Sbjct: 1 MAEMANYPMDHHQLGCGLMGGIFHRWSTRQRKTSVYSLPTDNSIDSLK--GFDNSKKTTV 58
Query: 60 ENSKKRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDAAR 119
SK +E ++ T + AKP P+ Q RR S QK R+S DAA
Sbjct: 59 YKSK------SEAAILDTNSPAKPLPEEGQKHIRRHSLAVLTRPHHHQKNEGRKSVDAA- 111
Query: 120 SSTSSSTSSGLTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQ-QTNDGKRLVRATSS 178
+ S +SS + K Q ++ KL + T +S ELS +V T+ + Q+ D K LV ATSS
Sbjct: 112 -ARCSISSSSSSRVKKSQSNEAKLRRASTSDSRELSMIVATNHHHPQSKDVKALVGATSS 170
Query: 179 NITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQD---VPKQRYGESRLGRNGV 235
N+ G+LGNL+QLG GN+ GN+ P+AT KT+DYL KN Q+ P+ S+LG NGV
Sbjct: 171 NVMLLGELGNLRQLGNGNLSGNNSPHATAKTLDYLNKNGQEANSTPRTINSHSKLGGNGV 230
Query: 236 MGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY 295
MGNIV+Q S EF Q S +K+D E LK MGNE Y K RFE+ALA YDRAIA+NSSKATY
Sbjct: 231 MGNIVRQSSCEFRQSQSPTSKMDSEVLKNMGNEKYRKGRFEEALAFYDRAIALNSSKATY 290
Query: 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
RSN+ AALIGLGR +EA+ ECKEAIR+DP Y RAHHRLA LY RLGEAEKA+ HYK+S
Sbjct: 291 RSNRGAALIGLGRLMEAVAECKEAIRLDPSYQRAHHRLATLYVRLGEAEKALYHYKQSGF 350
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
A+ +DIA+A+A KHL +C AR+ K WN LLKET IS G D++PQVYA+QAEALLR
Sbjct: 351 HADSEDIAQAQASQKHLNRCIVARKSKEWNFLLKETDRAISSGGDASPQVYAMQAEALLR 410
Query: 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475
L RH EA+ +Y + P F +E TK FGLA +LL++ AQVY+AAGRFEDA+ AQ AA
Sbjct: 411 LHRHDEAYRAYRRGPTFSIESCTKCFGLATTTHLLMIGAQVYMAAGRFEDAIAAAQQAAS 470
Query: 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535
+DP+N+EV VK A+A+ASARL GNLL+KA+K+ EAC AYSEGLEH+ YNS+LLCNRAA
Sbjct: 471 LDPSNREVSTVVKAARAVASARLSGNLLYKAAKFSEACIAYSEGLEHDPYNSILLCNRAA 530
Query: 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNE 583
CRSKL Q+EKAVEDCT AL + P+YSKARL EA+IQDYEML+RE P +E
Sbjct: 531 CRSKLDQFEKAVEDCTEALRLQPNYSKARLRRAHCNARLERWEASIQDYEMLLRESPADE 590
Query: 584 EVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHK 643
EVGRALFEA++QL KQRGED+KDMKFGSNLVF+SSNERFR+F+TSPGM+VVLFC K H+
Sbjct: 591 EVGRALFEAKIQLMKQRGEDIKDMKFGSNLVFISSNERFRYFITSPGMSVVLFCKKENHE 650
Query: 644 QVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCEL 703
QVLQLMEQVCKRFPSVNFLKVEVEDHPY+ KSE V+S+P+FKIYKNGSRVKEIPG+ EL
Sbjct: 651 QVLQLMEQVCKRFPSVNFLKVEVEDHPYLTKSESVTSLPSFKIYKNGSRVKEIPGNNREL 710
Query: 704 LEKSVKLYSS 713
LEKSVKLYSS
Sbjct: 711 LEKSVKLYSS 720
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141943|emb|CBI19146.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/730 (56%), Positives = 511/730 (70%), Gaps = 65/730 (8%)
Query: 4 VANCSMERGLGCGFIGRIFSRRSFWSAKKSLPSPPTEGSNNDLKLPISDNHKKPPAENSK 63
+ CS++ LGC + IF RRSFW K S+ PT SN+ LK+ P++ SK
Sbjct: 1 MTKCSVDSELGCSLMEGIFQRRSFWPKKTSVRPLPT-NSNSTLKV-------TSPSD-SK 51
Query: 64 KRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEP----PRLSTSQQKRHNRRSSDAAR 119
R S E TA++ SPKP L + + P R STS K R SDAAR
Sbjct: 52 GRHGGSRE-----TASLNSISPKPPPKLDEKLVTTPNLVRSRPSTSSHKSQGARPSDAAR 106
Query: 120 SSTSSSTSSGLTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATSSN 179
+S+ +GL Y N ++D+ Q+ + K LV +S N
Sbjct: 107 NSSLRREPNGL---------------YTEPNR-------ASTDHHQSYESKALVPTSSGN 144
Query: 180 ITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNI 239
+ P G LGNLK L TGN + P++T KT Y + L D SR+G NGVMGNI
Sbjct: 145 VMPLGHLGNLKPLRTGNSMITDLPDSTNKTRYYHQRKLSD--------SRIGSNGVMGNI 196
Query: 240 VKQPSGEFPQC----ISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY 295
++PS E P+ + LNKLDPE LK MGNE Y + RF++ALALY++AIA+N++KA+Y
Sbjct: 197 TRKPSNENPKSGGRFLGLLNKLDPEALKSMGNEEYKQGRFKEALALYNQAIALNANKASY 256
Query: 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
SNKSAALIGLG +EA++EC+EAI+I+P YHRAHHRLA LY RLGEAEKA++HYK SS
Sbjct: 257 HSNKSAALIGLGHLMEAVIECREAIQIEPSYHRAHHRLATLYLRLGEAEKALNHYKYSSP 316
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
+ + IAKA+AL HL++C EAR L+ WN LLKE + IS GADSAPQ+YA QAEALL+
Sbjct: 317 -TDSEYIAKAQALQTHLSRCIEARNLRDWNTLLKEARCAISSGADSAPQIYAFQAEALLK 375
Query: 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475
L RHQEA+ ++ K PKF ++ T+ FG A AY+LI++AQ+Y+ GR EDAV AQ AA+
Sbjct: 376 LHRHQEAYATFRKGPKFQIDSCTQFFGPAASAYMLIIQAQLYMTMGRLEDAVALAQKAAR 435
Query: 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535
+D +N EV ++ A+ SARLRGN LF ASK+ EAC Y+EGL+H+ YN++LLCNRAA
Sbjct: 436 LDSSNHEVTTVLRRVLAVESARLRGNQLFNASKFLEACVTYNEGLDHDPYNTILLCNRAA 495
Query: 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNE 583
CRSKLGQ+EKAVEDCT ALIV PSYSKARL EA+IQDYEMLIRE PG+E
Sbjct: 496 CRSKLGQFEKAVEDCTMALIVQPSYSKARLRRANCNAKLERWEASIQDYEMLIRETPGDE 555
Query: 584 EVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHK 643
EVGRALFEA++QLKKQRGED+KDMKFGSNLVF+S+NERFRHFVTSPGM+VVLFC+K HK
Sbjct: 556 EVGRALFEAKIQLKKQRGEDIKDMKFGSNLVFISNNERFRHFVTSPGMSVVLFCNKTSHK 615
Query: 644 QVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCEL 703
QVLQL+EQVCKR+PSV FLKVEVEDHPY+AKSE VSS+PAFKIYKNGSRVKEIPG+ EL
Sbjct: 616 QVLQLLEQVCKRYPSVYFLKVEVEDHPYLAKSESVSSVPAFKIYKNGSRVKEIPGNNREL 675
Query: 704 LEKSVKLYSS 713
LE SVKLYSS
Sbjct: 676 LESSVKLYSS 685
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459334|ref|XP_002284180.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/732 (57%), Positives = 524/732 (71%), Gaps = 47/732 (6%)
Query: 4 VANCSMERGLGCGFIGRIFSRRSFWSAKKSLPSPPTEGSNNDLKLPISDNHKKPPAENSK 63
+ CS++ LGC + IF RRSFW K S+ PT SN+ LK+ P++ SK
Sbjct: 1 MTKCSVDSELGCSLMEGIFQRRSFWPKKTSVRPLPT-NSNSTLKV-------TSPSD-SK 51
Query: 64 KRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEP----PRLSTSQQKRHNRRSSDAAR 119
R S E TA++ SPKP L + + P R STS K R SDAAR
Sbjct: 52 GRHGGSRE-----TASLNSISPKPPPKLDEKLVTTPNLVRSRPSTSSHKSQGARPSDAAR 106
Query: 120 SSTSSSTSSGLTNASKIQD--DKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATS 177
+S+SSS +S L S+ Q+ D ++L + P N L ++D+ Q+ + K LV +S
Sbjct: 107 NSSSSSATSSLKQQSQSQELTDMKRLRREP--NGLYTEPNRASTDHHQSYESKALVPTSS 164
Query: 178 SNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMG 237
N+ P G LGNLK L TGN + P++T KT Y + L D SR+G NGVMG
Sbjct: 165 GNVMPLGHLGNLKPLRTGNSMITDLPDSTNKTRYYHQRKLSD--------SRIGSNGVMG 216
Query: 238 NIVKQPSGEFPQC----ISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA 293
NI ++PS E P+ + LNKLDPE LK MGNE Y + RF++ALALY++AIA+N++KA
Sbjct: 217 NITRKPSNENPKSGGRFLGLLNKLDPEALKSMGNEEYKQGRFKEALALYNQAIALNANKA 276
Query: 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
+Y SNKSAALIGLG +EA++EC+EAI+I+P YHRAHHRLA LY RLGEAEKA++HYK S
Sbjct: 277 SYHSNKSAALIGLGHLMEAVIECREAIQIEPSYHRAHHRLATLYLRLGEAEKALNHYKYS 336
Query: 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413
S + + IAKA+AL HL++C EAR L+ WN LLKE + IS GADSAPQ+YA QAEAL
Sbjct: 337 SP-TDSEYIAKAQALQTHLSRCIEARNLRDWNTLLKEARCAISSGADSAPQIYAFQAEAL 395
Query: 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA 473
L+L RHQEA+ ++ K PKF ++ T+ FG A AY+LI++AQ+Y+ GR EDAV AQ A
Sbjct: 396 LKLHRHQEAYATFRKGPKFQIDSCTQFFGPAASAYMLIIQAQLYMTMGRLEDAVALAQKA 455
Query: 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533
A++D +N EV ++ A+ SARLRGN LF ASK+ EAC Y+EGL+H+ YN++LLCNR
Sbjct: 456 ARLDSSNHEVTTVLRRVLAVESARLRGNQLFNASKFLEACVTYNEGLDHDPYNTILLCNR 515
Query: 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581
AACRSKLGQ+EKAVEDCT ALIV PSYSKARL EA+IQDYEMLIRE PG
Sbjct: 516 AACRSKLGQFEKAVEDCTMALIVQPSYSKARLRRANCNAKLERWEASIQDYEMLIRETPG 575
Query: 582 NEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAE 641
+EEVGRALFEA++QLKKQRGED+KDMKFGSNLVF+S+NERFRHFVTSPGM+VVLFC+K
Sbjct: 576 DEEVGRALFEAKIQLKKQRGEDIKDMKFGSNLVFISNNERFRHFVTSPGMSVVLFCNKTS 635
Query: 642 HKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQC 701
HKQVLQL+EQVCKR+PSV FLKVEVEDHPY+AKSE VSS+PAFKIYKNGSRVKEIPG+
Sbjct: 636 HKQVLQLLEQVCKRYPSVYFLKVEVEDHPYLAKSESVSSVPAFKIYKNGSRVKEIPGNNR 695
Query: 702 ELLEKSVKLYSS 713
ELLE SVKLYSS
Sbjct: 696 ELLESSVKLYSS 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518485|ref|XP_003527909.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/735 (52%), Positives = 494/735 (67%), Gaps = 59/735 (8%)
Query: 1 MAEVANCSMERGLGCGFIGRIFSRRSFWSAKKS-LPSPPTEGSNNDLKL--PISDNHKKP 57
MAE +E LGCG +GRIF ++ +KS + S P + NN + + N KP
Sbjct: 1 MAEKTKNKVEVQLGCGLMGRIFHLKTNNRTRKSSVHSLPVKVCNNTAQQQRDQAKNEAKP 60
Query: 58 -PAENSKKRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSD 116
P S R SS IGT P+ K Q P R SS R ++ Q N R+SD
Sbjct: 61 SPNHESNVPRDSS-----IGTI----PTLKVEQN-PARKSSSSHRAPSAYQNTQNGRASD 110
Query: 117 AARSSTSSSTSSGLTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQ--QTNDGKRLVR 174
AAR+S S S ++ K++ ++ NSLEL+ + ++++ Q N+ K L +
Sbjct: 111 AARTSIQRSHDSN-------EESKQQQKEHAVVNSLELARISTSANHHHHQNNETKSLAK 163
Query: 175 ATSSNITPSGQLGNLKQLGTGNILGNHCPNATV---KTVDYLYKNLQDVPKQRYGESRLG 231
IT GN+L N P ++ K ++ L + Y +
Sbjct: 164 EFVLPIT-------------GNLLVNSSPRTSITKSKELNTLSGSCS------YNSNNST 204
Query: 232 RNGVMGNIVKQPSGEFPQCISSLN-KLDPEELKFMGNEAYNKARFEDALALYDRAIAINS 290
G+MGNI+++ S E Q S N ++DPE LK MGNEAY + RFE+AL LYDRAIA++S
Sbjct: 205 NKGMMGNIMRKNSDELAQFRSPRNGRVDPEVLKSMGNEAYKQGRFEEALTLYDRAIAVDS 264
Query: 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
KATY NKSAALIGLGR ++A+VEC+EAI+++P Y RAH RLA +YFRLGEAEKA++
Sbjct: 265 KKATYHCNKSAALIGLGRFLQAIVECEEAIKLEPSYGRAHTRLATIYFRLGEAEKALN-C 323
Query: 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410
++SS + +A+AL HL+KC EAR++K W +L ETQ IS GADSAP VY+L
Sbjct: 324 NETSSCVDSVLAFQAQALQNHLSKCTEARKVKDWKVILNETQAAISLGADSAPLVYSLHT 383
Query: 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470
EALL+L RHQEAH +Y K PKF L+ KLFG AYLL+ AQ+Y+AAGRFEDAV +
Sbjct: 384 EALLKLLRHQEAHATYEKMPKFDLDSSNKLFGPVRSAYLLMTGAQIYLAAGRFEDAVTAS 443
Query: 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530
+ AA++DP+N E+ V+ A+A+ SAR+ GNLLFKASK+ EA Y+EGLEH+ +NSVLL
Sbjct: 444 EQAAKLDPSNFEMNAVVRRARAVTSARMSGNLLFKASKFTEAYAVYNEGLEHDPHNSVLL 503
Query: 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIRE 578
CNRAACRSKLGQ+EKA+EDC ALI+ PSYSKARL EAAIQDYEML+RE
Sbjct: 504 CNRAACRSKLGQFEKAIEDCNVALIIQPSYSKARLRRADCNAKLERWEAAIQDYEMLLRE 563
Query: 579 IPGNEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS 638
PG+EEV RALFE Q+QLK RGED+KD+KFGSNL F+SSN+RFRH+VTSPGM+VVLFC+
Sbjct: 564 KPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCN 623
Query: 639 KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
KA HKQVL ++EQ CKRFPSVNFLKVE+EDHPY+AKSEGV+ IPAFKIYKNGSR+KEIPG
Sbjct: 624 KATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRIKEIPG 683
Query: 699 HQCELLEKSVKLYSS 713
+ +LLEK VKLYSS
Sbjct: 684 NNHDLLEKLVKLYSS 698
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488002|gb|ABK95822.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/630 (56%), Positives = 439/630 (69%), Gaps = 47/630 (7%)
Query: 1 MAEVANCSMERGLGCGFIGRIFSRRSFWSAKKSLPSPPTEGSNNDLKLPISDNHKKPPAE 60
MAE+ SME GLGCG R F RR FW K S+ S P E +NN L LP DN
Sbjct: 1 MAEITTYSMEHGLGCGPEWRAFLRRHFWPRKTSVHSLPAESTNNILGLPSIDN------- 53
Query: 61 NSKKRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDAARS 120
NS+++RS + V++ ++N+ K SP Q ++ S R ST Q +
Sbjct: 54 NSERQRSK-PQPVVLDSSNLPKSSP---QVEKKQKSLHRSRPSTFHQNKE---------- 99
Query: 121 STSSSTSSGLTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATSSNI 180
+SSG S Q +K L + +S EL +VIT ++Q++ND K LVRATS N+
Sbjct: 100 ----GSSSGGIKVS--QTNKTNLRRDSNNDSRELGRIVIT-NHQKSNDNKVLVRATSGNV 152
Query: 181 TPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQDV-----PKQRYGESRLGRNGV 235
G LGNL+Q G GN +GN PNATV+TVDYL+KNLQ+ P+ Y S+LG N V
Sbjct: 153 MLRGHLGNLRQSGNGNFIGNDSPNATVRTVDYLHKNLQEANLSSRPRNCY--SKLGSNSV 210
Query: 236 MGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY 295
MGNIV+QPSGEF Q + +DPE LK GNE Y + R+E AL YDRAI+++S+KATY
Sbjct: 211 MGNIVRQPSGEFRQGQGLITSMDPEVLKNKGNERYRQGRYEQALVWYDRAISLDSNKATY 270
Query: 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
RSN+SAALIGLGR EA+VECKEAIR+DP Y RAH+RLA LYFRLGE EKA+ HYK+S
Sbjct: 271 RSNRSAALIGLGRLTEAVVECKEAIRLDPSYQRAHYRLATLYFRLGETEKALYHYKQSGP 330
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
+ K++A+A+AL HL +C EAR+LK WN LLKET+ IS GADSAPQVYA+QAEALLR
Sbjct: 331 NTDSKEVAQAQALQMHLNRCTEARKLKEWNRLLKETERSISSGADSAPQVYAMQAEALLR 390
Query: 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475
L RHQEA+ +Y K P F +++YTKLFGL Y+L++ AQ+Y+AAGRFEDA+ TAQ AA+
Sbjct: 391 LHRHQEAYTAYQKGPNFSVDFYTKLFGLTVAPYILMIGAQIYMAAGRFEDAMATAQQAAR 450
Query: 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535
+D N EV VK +A+ASARL GN LFKASK+ EAC AYSEGLE++AYNS+LLCNRAA
Sbjct: 451 LDLRNGEVSNVVKSVRAVASARLSGNSLFKASKFTEACIAYSEGLEYDAYNSILLCNRAA 510
Query: 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNE 583
CRSKLGQYEKAVEDCT AL V P+YSKARL EA+IQD+EMLIRE P +E
Sbjct: 511 CRSKLGQYEKAVEDCTVALSVQPNYSKARLRRAHCNAELGRWEASIQDFEMLIRESPADE 570
Query: 584 EVGRALFEAQVQLKKQRGEDVKDMKFGSNL 613
EVGRAL ++QVQLKKQRGED KD+K+GS
Sbjct: 571 EVGRALLDSQVQLKKQRGEDTKDLKYGSKF 600
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552874|ref|XP_003544787.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/722 (53%), Positives = 495/722 (68%), Gaps = 63/722 (8%)
Query: 13 LGCGFIGRIFSRRSFWSAKKSLPSPPTEGSNNDLKLPISDNHKKPPAENSKKRRSSSAEN 72
LGCG +GRI +S K S+ S P + + +D D+ K ++ S+KR +
Sbjct: 15 LGCGLMGRILHLKSHKMRKASVHSLPFKNAQSD------DDVKSEESKVSRKRST----- 63
Query: 73 VLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDAARSSTSSSTSSG--- 129
GT KPS Q R+++S + T++ +H R S AARSSTSSS+S+
Sbjct: 64 ---GTEPPHKPS-GVEQKPARKSASIHQQPCTNRNNQHQRHSDVAARSSTSSSSSTSIST 119
Query: 130 -LTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATSSNITPSGQLGN 188
+ +K + +RK PT NSL L+ R ++SN
Sbjct: 120 KVVQQNKDKSHERKPQGQPTGNSLVLA------------------RISTSNENNENNKSQ 161
Query: 189 LKQLGTGNILGNHCPNATVKTVDYLYKN--LQDVPKQRYGESRLGRNGVMGNIVKQPS-- 244
LK TGN+L N+ P K+V+Y+ K+ L VP S+ G+MGNI+ + S
Sbjct: 162 LKL--TGNLLVNNTPRR--KSVEYMPKSAELNSVPSSYTNASK----GLMGNILNRNSDG 213
Query: 245 GEFPQCISS-LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL 303
+ Q +S + K+DPE K MGN+AY + RFE+ALALYDRAIA++S+KA Y NKSAAL
Sbjct: 214 NKVAQFLSPRMKKVDPEVSKSMGNDAYKQGRFEEALALYDRAIALDSNKAIYHCNKSAAL 273
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
IGLGR EA+VEC+E+I++DP Y RAH+RLA +YFRLGEAEKA+ + + + +
Sbjct: 274 IGLGRLQEAIVECEESIKLDPSYVRAHNRLATIYFRLGEAEKAL-NCNQITPYVDSILTF 332
Query: 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423
+A+AL HL KC EAR++ W+D+LKETQ+ IS G+DSAPQVYALQ EALL+L R+QEA+
Sbjct: 333 QAQALQNHLKKCIEARKVNAWSDILKETQSAISLGSDSAPQVYALQIEALLKLLRYQEAY 392
Query: 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483
YNK PKF +++ TK+FG A AYLL++ + +Y+A+GRFE+AV AQ A ++DP N+E+
Sbjct: 393 TIYNKMPKFSIDWCTKIFGPACSAYLLMIGSMIYLASGRFEEAVTAAQQAVKVDPGNREL 452
Query: 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543
VK A+A SAR+ GNLLFKASK+ EAC Y+EGLEH+ +NSVLLCNRAACRSKLGQ
Sbjct: 453 NAMVKKARAATSARMSGNLLFKASKFIEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQN 512
Query: 544 EKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFE 591
EKA+EDC AAL+V PSYSKA+L EAAIQDYEML+RE PG+EEV RALFE
Sbjct: 513 EKAIEDCNAALMVQPSYSKAKLRRANCNAKLERWEAAIQDYEMLLRERPGDEEVARALFE 572
Query: 592 AQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQ 651
AQ+QLK RGED+KD+KFGSNLV +SSN+RFRH+VTSPGMAV LF +KA HK+VL ++EQ
Sbjct: 573 AQLQLKMLRGEDIKDLKFGSNLVSISSNDRFRHYVTSPGMAVALFTNKATHKKVLLVLEQ 632
Query: 652 VCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
+ KRFPSVNFLKVE+EDHPY+AKSE VSSIPAFKIYKNGS VKEI G+ ELLE+SVKLY
Sbjct: 633 ISKRFPSVNFLKVEIEDHPYLAKSESVSSIPAFKIYKNGSSVKEISGNNHELLERSVKLY 692
Query: 712 SS 713
SS
Sbjct: 693 SS 694
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357489549|ref|XP_003615062.1| Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] gi|355516397|gb|AES98020.1| Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/720 (52%), Positives = 484/720 (67%), Gaps = 76/720 (10%)
Query: 13 LGCGFIGRIFSRRSFWSAKKSLPSPPTEGSNNDLKLPISDNHKKPPAENSKKRRSSSAEN 72
GCGF+ RIF+ +S + S P +G+N D H K
Sbjct: 14 FGCGFMERIFNLKSPRLRNSLVHSLPMKGNNID--------HVK---------------- 49
Query: 73 VLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDAARSSTSSSTSSGLTN 132
N AK P +P++ S+E + +RSSDA S++SS+S +
Sbjct: 50 ------NEAKLFPNKEPKVPQKISNE-----------NRKRSSDATARSSTSSSSGASST 92
Query: 133 ASKIQ-----DDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATSSNITPSGQLG 187
+++ DD KL NSL+L+ + +T D K SN + +
Sbjct: 93 LKRVEQNHNTDDDVKLQIESARNSLQLARISTI----RTRDNK-------SNKSITKDFS 141
Query: 188 NLKQLGTGNILGNHCPNATVKTVDYLYKNLQ-DVPKQRYGESRLGRNGVMGNIVKQPSGE 246
LK TGN+L N+ P K+VD L K+L+ + Y + GR VMGNI+++ S E
Sbjct: 142 PLKL--TGNLLVNNTPRR--KSVDSLPKHLELNSVSSFYNGNNNGRKVVMGNIMRKNSNE 197
Query: 247 FPQCISSLNKL-DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG 305
Q +S + + DPE LK MGNEAY K +FE+ALALYD+AIAI+S+KATY NKSAALIG
Sbjct: 198 LAQFLSQRHNIADPEVLKSMGNEAYKKGKFEEALALYDKAIAIDSNKATYHCNKSAALIG 257
Query: 306 LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
LGR EA++EC+E+IR+DP Y+RAH+RLA +YFRLG+ EKA+ +S+S + +A
Sbjct: 258 LGRFQEAIIECEESIRLDPSYNRAHNRLATIYFRLGDVEKALD-CNRSTSNVDSVLAFQA 316
Query: 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425
+AL HL KC EAR+ W+ +LKETQ+ +S GADSAPQ+YALQ EALL+L R+QEA+
Sbjct: 317 QALQNHLKKCIEARKFNEWSVVLKETQSALSLGADSAPQIYALQTEALLKLVRYQEAYAV 376
Query: 426 YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485
Y+ PKF ++ K+FG+A AYL ++ A VY+A+GRFE+AVKT+Q A ++DP+N+EV
Sbjct: 377 YDNMPKFSDDWCNKIFGMATSAYLSMISALVYLASGRFEEAVKTSQQADRVDPSNREVNA 436
Query: 486 GVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEK 545
++ AKA+ S+R+ GNLLFKASK+ EAC Y+EGL+H+ +NSVLLCNRAACRSKLGQYEK
Sbjct: 437 VLRRAKAVTSSRMSGNLLFKASKFMEACAVYNEGLDHDPHNSVLLCNRAACRSKLGQYEK 496
Query: 546 AVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593
A+EDC AAL++ P YSKARL E AIQDYEMLIRE PG+EEV RALFEA+
Sbjct: 497 AIEDCDAALMLNPCYSKARLRRAYCNAKLERWEVAIQDYEMLIREKPGDEEVARALFEAR 556
Query: 594 VQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVC 653
+QLK RGED+KD+KFGSNLVF+SSN+RFRH+VTSPGMAVVLF +K HKQV ++EQ
Sbjct: 557 LQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKGTHKQVSMVLEQTS 616
Query: 654 KRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
KRFPSVNFLKVE+EDHPY+AKSEGVSS PAFKIYKNGSRVKEI G+ E LEKSVK YSS
Sbjct: 617 KRFPSVNFLKVEIEDHPYLAKSEGVSSFPAFKIYKNGSRVKEISGNNHEFLEKSVKFYSS 676
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496360|ref|XP_003635218.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/737 (49%), Positives = 483/737 (65%), Gaps = 54/737 (7%)
Query: 4 VANCSMERGLGCGFIGRIFSRRSFW----SAKKSLPSPPTEGSNNDLKLPISDNHKKPPA 59
+ + S + GCG + +F RR+FW ++ SLPS + + P S + +
Sbjct: 1 MVDTSPNKSSGCGLLNAVFGRRTFWLRRATSTGSLPSMNSINISRVSGTPSSKRRRGSSS 60
Query: 60 -ENSKKRRSSSAENVL-IGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDA 117
E S +S+S+E +G + +PSP +T PP + +Q RRS +A
Sbjct: 61 DETSFLNQSNSSEAASGLGDKPIIRPSPSHTKT--------PPIYNQNQ----GRRSDEA 108
Query: 118 ARSSTSSSTSSGLTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATS 177
+ S + ++ + R++ + S EL ++ +D+Q + LVRA+S
Sbjct: 109 IMQPSLRSGAMKMSQREAYVNQGRRVPREAIGISGELEAMI--ADHQSSKGNSSLVRASS 166
Query: 178 SNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQD---VPKQRYGESRLGRNG 234
SN+ LGNL+Q GTGN N+ DYL K ++ +P +Y S+
Sbjct: 167 SNVMLFSNLGNLRQPGTGNFTSNN-------VQDYLPKAAREETSMPNGKYSSSQ----- 214
Query: 235 VMGNIVKQPSGE----FPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINS 290
MGN+VK+P+GE C + ++DPE LK MGNE Y RF +ALALYD AI+I+
Sbjct: 215 -MGNVVKKPNGEKEPPSSLCRALSTRMDPETLKIMGNEDYKNGRFAEALALYDAAISIDP 273
Query: 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
+KA+YRSNKSAAL LGR +EA+ EC+EA+RI+P YHRAH RL LY RLGEAEKA+ H+
Sbjct: 274 NKASYRSNKSAALTALGRLLEAVFECREALRIEPYYHRAHQRLGNLYLRLGEAEKAIYHF 333
Query: 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410
K + ++ +D+AKA +L HL+KC EAR L+ WN L+KE IS GADSAPQ+Y LQA
Sbjct: 334 KHAGPESDPEDMAKAHSLQAHLSKCTEARRLRDWNTLVKEAGYTISAGADSAPQIYTLQA 393
Query: 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470
EALL+L RHQEA SP F ++ TK FG G A LL++RAQV +AAGR +DA + A
Sbjct: 394 EALLKLHRHQEADAVLAASPYFSVDDCTKFFGPYGNANLLMIRAQVDLAAGRLDDAFEAA 453
Query: 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530
Q AA++D NNKEV V+ + + SAR GN LFKAS++ EAC AY EGL+H+ +NSVLL
Sbjct: 454 QKAARLDSNNKEVGIVVRRTRGVISARAMGNDLFKASRFSEACIAYGEGLDHDPFNSVLL 513
Query: 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIRE 578
CNRA CRSKLGQ+EKAVEDCTAAL V PSYSKARL EA+IQDYE+L+RE
Sbjct: 514 CNRATCRSKLGQFEKAVEDCTAALSVRPSYSKARLRRADCNAKLGRCEASIQDYEVLMRE 573
Query: 579 IPGNEEVGRALFEAQVQLKKQRGEDVKDMKF--GSNLVFVSSNERFRHFVTSPGMAVVLF 636
P +EEVG+A+FEAQVQLKKQRGEDV+DMK+ G+ +V +SS+ERF+ F TSPG++V LF
Sbjct: 574 TPEDEEVGKAMFEAQVQLKKQRGEDVRDMKYTSGAKVVHISSHERFKDFATSPGVSVALF 633
Query: 637 CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696
CS KQV+Q MEQ+CKR+PSVNFLKVEVE+HP IA+SEGVSS+PAFKIYKNGSRVKEI
Sbjct: 634 CSGEGSKQVIQFMEQLCKRYPSVNFLKVEVEEHPNIARSEGVSSLPAFKIYKNGSRVKEI 693
Query: 697 PGHQCELLEKSVKLYSS 713
G +LLE +VK Y++
Sbjct: 694 SGDNLDLLESTVKSYNT 710
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090612|emb|CBI40996.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/737 (49%), Positives = 479/737 (64%), Gaps = 60/737 (8%)
Query: 1 MAEVANCSMERGLGCGFIGRIFSRRSFW----SAKKSLPSPPTEGSNNDLKLPISDNHKK 56
M E+ + S + GCG + +F RR+FW ++ SLPS + + P S +
Sbjct: 1 MTEMVDTSPNKSSGCGLLNAVFGRRTFWLRRATSTGSLPSMNSINISRVSGTPSSKRRRG 60
Query: 57 PPA-ENSKKRRSSSAENVL-IGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRS 114
+ E S +S+S+E +G + +PSP +T PP + +Q RRS
Sbjct: 61 SSSDETSFLNQSNSSEAASGLGDKPIIRPSPSHTKT--------PPIYNQNQ----GRRS 108
Query: 115 SDAARSSTSSSTSSGLTNASKIQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVR 174
+A + S + ++ + R++ + S EL ++ +D+Q + LVR
Sbjct: 109 DEAIMQPSLRSGAMKMSQREAYVNQGRRVPREAIGISGELEAMI--ADHQSSKGNSSLVR 166
Query: 175 ATSSNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNG 234
A+SSN+ LGNL+Q GTGN N+ +P +Y S+
Sbjct: 167 ASSSNVMLFSNLGNLRQPGTGNFTSNNT----------------SMPNGKYSSSQ----- 205
Query: 235 VMGNIVKQPSGE----FPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINS 290
MGN+VK+P+GE C + ++DPE LK MGNE Y RF +ALALYD AI+I+
Sbjct: 206 -MGNVVKKPNGEKEPPSSLCRALSTRMDPETLKIMGNEDYKNGRFAEALALYDAAISIDP 264
Query: 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
+KA+YRSNKSAAL LGR +EA+ EC+EA+RI+P YHRAH RL LY RLGEAEKA+ H+
Sbjct: 265 NKASYRSNKSAALTALGRLLEAVFECREALRIEPYYHRAHQRLGNLYLRLGEAEKAIYHF 324
Query: 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410
K + ++ +D+AKA +L HL+KC EAR L+ WN L+KE IS GADSAPQ+Y LQA
Sbjct: 325 KHAGPESDPEDMAKAHSLQAHLSKCTEARRLRDWNTLVKEAGYTISAGADSAPQIYTLQA 384
Query: 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470
EALL+L RHQEA SP F ++ TK FG G A LL++RAQV +AAGR +DA + A
Sbjct: 385 EALLKLHRHQEADAVLAASPYFSVDDCTKFFGPYGNANLLMIRAQVDLAAGRLDDAFEAA 444
Query: 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530
Q AA++D NNKEV V+ + + SAR GN LFKAS++ EAC AY EGL+H+ +NSVLL
Sbjct: 445 QKAARLDSNNKEVGIVVRRTRGVISARAMGNDLFKASRFSEACIAYGEGLDHDPFNSVLL 504
Query: 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIRE 578
CNRA CRSKLGQ+EKAVEDCTAAL V PSYSKARL EA+IQDYE+L+RE
Sbjct: 505 CNRATCRSKLGQFEKAVEDCTAALSVRPSYSKARLRRADCNAKLGRCEASIQDYEVLMRE 564
Query: 579 IPGNEEVGRALFEAQVQLKKQRGEDVKDMKF--GSNLVFVSSNERFRHFVTSPGMAVVLF 636
P +EEVG+A+FEAQVQLKKQRGEDV+DMK+ G+ +V +SS+ERF+ F TSPG++V LF
Sbjct: 565 TPEDEEVGKAMFEAQVQLKKQRGEDVRDMKYTSGAKVVHISSHERFKDFATSPGVSVALF 624
Query: 637 CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696
CS KQV+Q MEQ+CKR+PSVNFLKVEVE+HP IA+SEGVSS+PAFKIYKNGSRVKEI
Sbjct: 625 CSGEGSKQVIQFMEQLCKRYPSVNFLKVEVEEHPNIARSEGVSSLPAFKIYKNGSRVKEI 684
Query: 697 PGHQCELLEKSVKLYSS 713
G +LLE +VK Y++
Sbjct: 685 SGDNLDLLESTVKSYNT 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082142|ref|XP_002306580.1| predicted protein [Populus trichocarpa] gi|222856029|gb|EEE93576.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/464 (70%), Positives = 388/464 (83%), Gaps = 12/464 (2%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
DPE LK GNE Y + RFE+ALA YDRAIA++S+KATYRSN+SAALIGLGR IEA+VECK
Sbjct: 1 DPEVLKNKGNERYKQGRFEEALAFYDRAIALDSAKATYRSNRSAALIGLGRLIEAVVECK 60
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377
EAIR+DP Y RAH+RLA +YFRLGE EKA+SHYK+S ++ + KD+A+A+AL K+L +C E
Sbjct: 61 EAIRLDPSYQRAHYRLATIYFRLGETEKALSHYKQSGAITDSKDLAQAQALQKNLNRCIE 120
Query: 378 ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY 437
AR+L+ W+ LLKET+ +S GADSAPQV+A+QAEALLRL RHQEA+ +Y K P F +E
Sbjct: 121 ARKLEEWSRLLKETERTVSSGADSAPQVFAMQAEALLRLHRHQEAYTAYQKRPNFSVESC 180
Query: 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASAR 497
KLFGL +YLL++ A+VY+AAGRFEDA+ AQ AA++DP N+E +K A+A+ASAR
Sbjct: 181 AKLFGLTIASYLLVIGAKVYMAAGRFEDAMAAAQQAARLDPGNREASTVLKSARAVASAR 240
Query: 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557
L GNLLFKASK+ EAC AYSEGLEH+ NS+LLCNRAACRSKLGQ+EKAVEDCTAAL +
Sbjct: 241 LSGNLLFKASKFTEACIAYSEGLEHDPCNSILLCNRAACRSKLGQFEKAVEDCTAALSLQ 300
Query: 558 PSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVK 605
P+YSKARL EA+IQD+EMLIRE P +EEVGRALFEAQVQLKKQRGED +
Sbjct: 301 PNYSKARLRRAHCNAELGRWEASIQDFEMLIRESPADEEVGRALFEAQVQLKKQRGEDTQ 360
Query: 606 DMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKRFPSVNFLKVE 665
D+KFGSNLVFVSSNERFRHFVTSPGM+VVLFCSK + VLQLMEQV K+FPSVNFLKVE
Sbjct: 361 DLKFGSNLVFVSSNERFRHFVTSPGMSVVLFCSKYNGQTVLQLMEQVSKKFPSVNFLKVE 420
Query: 666 VEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
VEDHPY+AKSE V+ +P+FKIYKNGSRVKEIPG+ +LLEKSVK
Sbjct: 421 VEDHPYLAKSERVTFLPSFKIYKNGSRVKEIPGNNHDLLEKSVK 464
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| TAIR|locus:2171860 | 593 | TPR14 "AT5G65160" [Arabidopsis | 0.531 | 0.639 | 0.506 | 3.9e-110 | |
| TAIR|locus:2184148 | 594 | TPR13 "tetratricopeptide repea | 0.758 | 0.910 | 0.420 | 9.8e-103 | |
| TAIR|locus:2194739 | 530 | TPR12 "AT1G78120" [Arabidopsis | 0.569 | 0.766 | 0.474 | 3.3e-96 | |
| TAIR|locus:2009590 | 699 | TTL1 "tetratricopeptide-repeat | 0.561 | 0.572 | 0.420 | 3.2e-81 | |
| TAIR|locus:2041559 | 691 | TTL3 "tetratricopetide-repeat | 0.659 | 0.680 | 0.386 | 2.3e-78 | |
| TAIR|locus:2076386 | 682 | TTL4 "tetratricopetide-repeat | 0.566 | 0.592 | 0.397 | 7.5e-73 | |
| ASPGD|ASPL0000012039 | 634 | AN4192 [Emericella nidulans (t | 0.497 | 0.559 | 0.244 | 3.5e-23 | |
| FB|FBgn0032586 | 508 | Tpr2 "Tetratricopeptide repeat | 0.479 | 0.673 | 0.267 | 3.1e-19 | |
| MGI|MGI:1928373 | 494 | Dnajc7 "DnaJ (Hsp40) homolog, | 0.194 | 0.281 | 0.326 | 3.2e-19 | |
| UNIPROTKB|G3V8B8 | 494 | Dnajc7 "Protein Dnajc7" [Rattu | 0.194 | 0.281 | 0.320 | 1.1e-18 |
| TAIR|locus:2171860 TPR14 "AT5G65160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 198/391 (50%), Positives = 259/391 (66%)
Query: 225 YGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDR 284
YG R K C + ++DPE LK MGNE Y F +ALALYD
Sbjct: 202 YGVKRTTMGAATATTTKSQDQSGSLCRAISTRMDPETLKIMGNEDYKNGNFAEALALYDA 261
Query: 285 AIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE 344
AIAI+ +KA YRSNKSAAL LGR ++A+ EC+EAIRI+P YHRAHHRL LY RLGE E
Sbjct: 262 AIAIDPNKAAYRSNKSAALTALGRILDAVFECREAIRIEPHYHRAHHRLGNLYLRLGEVE 321
Query: 345 KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404
K++ H+K S A+++DIAKA+ + HL KC EA+ L+ WN L+ ET N IS GAD+APQ
Sbjct: 322 KSIYHFKHSGPEADREDIAKAKTVQTHLNKCTEAKRLRDWNGLITETTNTISSGADAAPQ 381
Query: 405 VYXXXXXXXXXXXXHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFE 464
VY HQEA D+ ++ P F ++ T+ +G G A L+VRAQV++A+GRF+
Sbjct: 382 VYALQAEALLKTHRHQEADDALSRCPVFDIDASTRYYGPVGYAGFLVVRAQVHLASGRFD 441
Query: 465 DAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524
+AV+ Q A ++D NN+EVI + A+A+ AR +GN LFK+ +++EAC AY EGL+H+
Sbjct: 442 EAVEAIQRAGKLDGNNREVIMISRRAQAVTEARFKGNELFKSGRFQEACAAYGEGLDHDP 501
Query: 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDY 572
NSVLLCNRAACRSKLGQ++K++EDCTAAL V P Y KARL E A+ DY
Sbjct: 502 RNSVLLCNRAACRSKLGQFDKSIEDCTAALSVRPGYGKARLRRADCNAKIEKWELAVGDY 561
Query: 573 EMLIREIPGNEEVGRALFEAQVQLKKQRGED 603
E+L +E P +E+V R L EAQ QL K+ G+D
Sbjct: 562 EILKKESPEDEQVIRGLSEAQQQLMKRSGQD 592
|
|
| TAIR|locus:2184148 TPR13 "tetratricopeptide repeat 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 242/575 (42%), Positives = 333/575 (57%)
Query: 55 KKPPAENSKKRRSSSAENVLIGTANVAK----PSP----KPNQTLPRRTSSEPPRLSTSQ 106
KK PA+N + + S+ N TA A SP P + + EP +
Sbjct: 27 KKCPADNGSHKSTMSSSNASTATATTANIQFTKSPCTEFNPRKLQENKVLPEPIEVQNQV 86
Query: 107 Q----KRHNXXXXXXXXXXXXXXXXXXXXXXXKIQDDK-RKLSKYPTCNSLELSTVVITS 161
Q K + +Q + RK+ + S EL +++I +
Sbjct: 87 QRPVSKPSSHQYPNNNQLGSNGNNQPSNNNQGPVQQQQARKVPREAIGLSGELESMIIDN 146
Query: 162 DYQQTNDGKRLVRATSSNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNL-QDV 220
+ N+G +VRA+SSN+ G LGNLKQ G GN T++ Y V
Sbjct: 147 QKAKGNNGS-MVRASSSNVMLFGNLGNLKQPGPSG--GNQ---TTIQNNGYGNTGGGYGV 200
Query: 221 PKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALA 280
K E + + + + SG + IS+ ++DPE LK MGNE Y F +ALA
Sbjct: 201 KKTLEEERKTSVAQIPASNNQDQSGSLCRAIST--RMDPETLKIMGNEDYKNGNFAEALA 258
Query: 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340
LY+ AI+I+ KA+YRSNKSAAL LGR +EA+ EC+EAIRIDP YHRAHHRLA LY RL
Sbjct: 259 LYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRL 318
Query: 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD 400
GE E ++ H+K + A+Q+DI+KA+ + HL KC EA+ L+ WN L+KET+N I+ GAD
Sbjct: 319 GEVENSIYHFKHAGPEADQEDISKAKMVQTHLNKCTEAKRLRDWNTLIKETENTITTGAD 378
Query: 401 SAPQVYXXXXXXXXXXXXHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460
+APQVY HQEA D+ ++ P F E TK +G G A L+V AQV++A+
Sbjct: 379 AAPQVYALQAEAFLKTYRHQEADDALSRCPVFDGEMSTKYYGSIGYAGFLVVWAQVHMAS 438
Query: 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520
GRF +AV+ Q A ++D NN+EV ++ A+A+ +AR RGN FKA +++EAC AY EGL
Sbjct: 439 GRFVEAVEAIQRAGKLDGNNREVSMVLRRAQAVTAARSRGNDFFKAGRFQEACTAYGEGL 498
Query: 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAA 568
+H++ NSVLLCNRAAC SK+GQ+++AVED +AAL V P Y+KARL E+A
Sbjct: 499 DHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESA 558
Query: 569 IQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGED 603
+ DYE+L +E P +EEV + L EAQ QL K+RG D
Sbjct: 559 VGDYEILRKETPEDEEVIKGLSEAQKQLVKRRGHD 593
|
|
| TAIR|locus:2194739 TPR12 "AT1G78120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
Identities = 204/430 (47%), Positives = 266/430 (61%)
Query: 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSL----------NKL 257
K+ D K++ R R NGVMGNI+ +P ++ ++L
Sbjct: 99 KSSDSARKSISS-GSSRTESKRFSLNGVMGNIIVKPQPAVKTDVTQTKSRWEGKPVNHRL 157
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
DPE LK MGNE Y + RF AL Y+RAI+ + TY SNKSAALI LGR +EA C+
Sbjct: 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACE 217
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377
EA+R++P Y RAH RLA L RLGE EKA+ HY ++ K I + E + K L +C+E
Sbjct: 218 EALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRCDE 277
Query: 378 ARELKRWNDLLKETQNVISFGADSAPQVYXXXXXXXXXXXXHQEAHDSYNKSPK-FCLEY 436
AR K WN LKET IS+GADS+P+VY H+EA+ Y K K F ++
Sbjct: 278 ARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTKRFDIDS 337
Query: 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496
+ K+FGL+ +YLL+V AQVYIA GRFEDAV ++ AA++DP+++EV + A+A+ASA
Sbjct: 338 FIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASA 397
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
RL GNLLF ASK++ A Y+EGLE++ YN++LLCNRAA R KL +EKA+EDCT AL +
Sbjct: 398 RLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSL 457
Query: 557 MPSYSKAR---------LEA---AIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV 604
PSY KAR LE AIQDYE+L+ E P +EE RAL E V+ KKQ G DV
Sbjct: 458 QPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVRFKKQTGGDV 517
Query: 605 KDMKFGSNLV 614
+ GS LV
Sbjct: 518 RFKGVGSELV 527
|
|
| TAIR|locus:2009590 TTL1 "tetratricopeptide-repeat thioredoxin-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 175/416 (42%), Positives = 251/416 (60%)
Query: 244 SGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL 303
+GE P ++ D EE+K +GNE Y K F +AL LYDRAIA++ + A YRSN++AAL
Sbjct: 212 TGETPIWKKAILGSDSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAAL 271
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
IGL R EA+ EC++A+R DP Y RAHHRLA+L RLG+ A H ++ ++
Sbjct: 272 IGLSRIGEAVKECEDAVRSDPNYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQ 331
Query: 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYXXXXXXXXXXXXHQEAH 423
K EA+ KHL KC +AR + W +L E I GAD +PQ++ +A
Sbjct: 332 KLEAVEKHLIKCVDARRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRLDDAQ 391
Query: 424 DSYNKSPK---FCLEY-YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479
+ PK F + T+ G+A AY+ V+AQ+ +A GRFE+AV A+ A+QIDP
Sbjct: 392 SKLLEVPKVEPFPVSCSQTRFSGMACEAYIYFVKAQIEMALGRFENAVMAAEKASQIDPR 451
Query: 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK 539
EV +A AR RGN L+K+ +Y EA AY+EGL + N++L CNRAAC K
Sbjct: 452 CNEVAMLHNTVTLVARARARGNDLYKSERYTEASSAYAEGLRLDPCNAILYCNRAACWFK 511
Query: 540 LGQYEKAVEDCTAALIVMPSYSK---------ARLE---AAIQDYEMLIREIPGNEEVGR 587
LG +E+++EDC AL PSY+K +++E AA+ DYE LIRE+P ++EV
Sbjct: 512 LGMWERSIEDCNQALRYQPSYTKPLLRRAASNSKMERWGAAVSDYEALIRELPHDKEVAE 571
Query: 588 ALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHK 643
+LF AQV LKK RGE+V +M+FG + + S E+F+ + PG++V+ F + ++H+
Sbjct: 572 SLFHAQVALKKSRGEEVLNMEFGGEVEEIYSLEQFKSAMNLPGVSVIHFSTASDHQ 627
|
|
| TAIR|locus:2041559 TTL3 "tetratricopetide-repeat thioredoxin-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 192/497 (38%), Positives = 268/497 (53%)
Query: 169 GKRLVRATSSNITPSGQLGNLKQLG--TGNI-LGNHCPNATVKTVDYLYKNLQDVPKQRY 225
G ATS G G + TG + GN CP+ + +
Sbjct: 128 GSSFTSATSHTSPQGGGSGATSAVSPNTGVLPAGNICPSGRILKTGMASRTSSRTETLCT 187
Query: 226 GESRLGRNGVMGNIVKQPSG--EFPQCIS-SLNKLDPEELKFMGNEAYNKARFEDALALY 282
G G GN+V+ G + + + N +PEELK MGN+ Y + F +AL+LY
Sbjct: 188 GTGNYGH----GNVVRSGGGGGTSGKAVRVAENGENPEELKRMGNDMYRRGSFSEALSLY 243
Query: 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342
DRAI I+ A YRSN++AAL L R EA+ EC EA+RIDP Y RAH RLA LY RLGE
Sbjct: 244 DRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGE 303
Query: 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402
AE A H S +Q D+ + + L KHL +C EAR++ W +KET I+ GADS+
Sbjct: 304 AENARRHICFSGQCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKETDAAIANGADSS 363
Query: 403 PQVYXXXXXXXXXXXXHQEAHDSYNKSPKFCLEYYT----KLFGLAGGAYLLIVRAQVYI 458
PQ+ +++ + P+ Y++ KLFG+ AY+L ++AQV +
Sbjct: 364 PQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYHSQPQVKLFGMVVEAYVLCIQAQVDM 423
Query: 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518
A GRFE+AV A+ AA +D N EV+ + K + AR RGN LF + ++ EAC AY +
Sbjct: 424 ALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRARTRGNELFSSGRFSEACVAYGD 483
Query: 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLE 566
GL+ + NSVL CNRAAC KLG +EK+VEDC AL PSY KA R E
Sbjct: 484 GLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHALKSQPSYIKALLRRAASYGKLGRWE 543
Query: 567 AAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFV 626
A++DYE L RE+PG+ EV +L A+ L R ++ K + F + + VS+ ++F+ V
Sbjct: 544 DAVKDYEFLRRELPGDSEVAESLERAKTVLMN-RSQESKSLGFNNEVEAVSTLDKFKKSV 602
Query: 627 TSPGMAVVLFCSKAEHK 643
PG++V F S + +
Sbjct: 603 ALPGVSVFHFKSSSNRQ 619
|
|
| TAIR|locus:2076386 TTL4 "tetratricopetide-repeat thioredoxin-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 169/425 (39%), Positives = 247/425 (58%)
Query: 237 GNIVKQPSGEFPQCISSLNKL-DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY 295
GNI++ G+ + ++ D EE+K GN Y K + +ALALYDRAI+++ Y
Sbjct: 189 GNIIRT-GGKVSHATKAAAEMSDSEEVKKAGNVMYRKGNYAEALALYDRAISLSPENPAY 247
Query: 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
RSN++AAL GR EA+ EC EA+R DP Y RAH RLA LY RLGEAE A H S
Sbjct: 248 RSNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSGQ 307
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYXXXXXXXXX 415
+Q D+ + + L KHL C EAR++ W ++ E I+ GADS+PQ+
Sbjct: 308 CPDQADLQRLQTLEKHLRLCTEARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLR 367
Query: 416 XXXHQEAHDSYNKSPKFCLEYYT----KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471
+++ + P+ ++T KLFG+ AY+L V+AQV +A GRFE+A+ +
Sbjct: 368 LHQIKDSDLCISSIPRLD-HHHTQPPEKLFGIVCDAYVLCVQAQVDMALGRFENAIVKVE 426
Query: 472 DAAQIDPNNK-EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530
A ID +N EV+ + K +A AR RGN LF + +Y EA AY +GL+ +A+NSVL
Sbjct: 427 RAMTIDHSNSPEVVSVLNNVKNVAKARTRGNELFSSGRYSEASVAYGDGLKLDAFNSVLY 486
Query: 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIRE 578
CNRAAC KLG +EK+V+DC AL + PSY+KA R E A++DYE+L +E
Sbjct: 487 CNRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRKE 546
Query: 579 IPGNEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS 638
+PG+ EV +L A+ L + E+ K + F + + VS+ ++F+ + PG++V F S
Sbjct: 547 LPGDSEVAESLQRARNALSN-KSEEPKYLGFNNEVEEVSTLDKFKTATSLPGISVFHFKS 605
Query: 639 KAEHK 643
+ +
Sbjct: 606 SSNRQ 610
|
|
| ASPGD|ASPL0000012039 AN4192 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 95/389 (24%), Positives = 181/389 (46%)
Query: 242 QPSGE-F------PQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKAT 294
QP+GE F P S+ N + + K GN+ + + A+ + +AI +N + +
Sbjct: 113 QPNGEQFHQSPTPPPHRSTGNTDEADSFKLAGNKFFKDGNYNRAIEEFTKAIELNPNNSI 172
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354
YRSN++AA + ++AL + + A +DP ++ HRL+ LG +A+ ++
Sbjct: 173 YRSNRAAANLAAHNYLDALEDAERADELDPGNNKILHRLSRTLTALGRPAEALEVLERMQ 232
Query: 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDL----LKETQNVISFGADSAPQVYXXXX 410
A+ D AE + + + + E R + + + + ++ G P+ +
Sbjct: 233 PPASAADRQNAEKMLRFINQAKETLAENRGASMAVFCIDQARQLLGPGVKE-PRAWTLLT 291
Query: 411 XXXXXXXXHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470
+S+ K+ + L L++RA+ Y G + A+K+
Sbjct: 292 AEAQLKMA---TGNSFGKAQDIAINM---LRDNNQDPDALLIRAKAYYGLGETDQALKSL 345
Query: 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE----HEAYN 526
+ +DP+++E IK ++M + + + GN FKA Y++A Y+E L ++ N
Sbjct: 346 KMCIGLDPDHREAIKLLRMLQKLTRTKEEGNNAFKAKDYRKAIELYTEALSVDETNKDVN 405
Query: 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA---RLEA---------AIQDYEM 574
+ +L NRA L +Y++A++DCT AL + P+Y KA R +A A+ DY+
Sbjct: 406 AKILQNRAQAYINLKEYDEAIKDCTEALRLDPTYIKAQKMRAKAHGGAGNWQEAVSDYKA 465
Query: 575 LIREIPGNEEVGRALFEAQVQLKKQRGED 603
+ PG + + + A+ +LKK + +D
Sbjct: 466 VAEANPGEKGIREDIRRAEFELKKAQRKD 494
|
|
| FB|FBgn0032586 Tpr2 "Tetratricopeptide repeat protein 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 100/374 (26%), Positives = 169/374 (45%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EE K +GN+ Y +++AL LY AI++ A Y N++A + L AL + + A
Sbjct: 50 EEKKKLGNDQYKAQNYQNALKLYTDAISLCPDSAAYYGNRAACYMMLLNYNSALTDARHA 109
Query: 320 IRIDPCYHRAHHRLAMLYFRLGE---AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376
IRIDP + +A+ R+A LG+ E+AV + +SL+ +A + + L +
Sbjct: 110 IRIDPGFEKAYVRVAKCCLALGDIIGTEQAVKMVNELNSLSTA--VAAEQTAAQKLRQL- 166
Query: 377 EARELKRWNDLLKETQNVISFGADSAPQVYXXXXXXXXXXXXHQEAHDSYNKSPKFCLEY 436
EA ++ K ++V+ F DSA ++ E + + L+
Sbjct: 167 EATIQANYDT--KSYRSVV-FYLDSALKL---APACLKYRLLKAECLAFLGRCDE-ALDI 219
Query: 437 YTKLFGL-AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495
+ L A + VR A + + + A +DP++ + + K +
Sbjct: 220 AVSVMKLDTTSADAIYVRGLCLYYADNLDKGILHFERALTLDPDHYKSKQMRSKCKQLKE 279
Query: 496 ARLRGNLLFKASKYKEACYAYSEGL---EHEA-YNSVLLCNRAACRSKLGQYEKAVEDCT 551
+ GN+LFK+ +Y+EA Y++ L EH NS LL NRA +++G +AV DC
Sbjct: 280 MKENGNMLFKSGRYREAHVIYTDALKIDEHNKDINSKLLYNRALVNTRIGNLREAVADCN 339
Query: 552 AALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599
L + Y KA L E ++ DYE + ++ E+ R L EA+ L+K
Sbjct: 340 RVLELNSQYLKALLLRARCYNDLEKFEESVADYETAL-QLEKTPEIKRMLREAKFALEKS 398
Query: 600 RGEDV-KDMKFGSN 612
+ +D K + G N
Sbjct: 399 KRKDYYKILGIGRN 412
|
|
| MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 51/156 (32%), Positives = 79/156 (50%)
Query: 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL--- 520
E AV+ A ++ P++++ + AKA+ + + GN FK YK A Y+E L
Sbjct: 227 EKAVQFFVQALRMAPDHEKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGID 286
Query: 521 -EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EA 567
+ N+ L CNR SKL Q E A+EDCT A+ + +Y KA L E
Sbjct: 287 PNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEE 346
Query: 568 AIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGED 603
A++DYE + + +E + L AQ++LKK + +D
Sbjct: 347 AVRDYEK-VYQTEKTKEHKQLLKNAQLELKKSKRKD 381
|
|
| UNIPROTKB|G3V8B8 Dnajc7 "Protein Dnajc7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 50/156 (32%), Positives = 79/156 (50%)
Query: 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL--- 520
E AV+ A ++ P++++ + AKA+ + + GN FK YK A Y+E L
Sbjct: 227 EKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGID 286
Query: 521 -EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EA 567
+ N+ L CNR SKL + E A+EDCT A+ + +Y KA L E
Sbjct: 287 PNNIKTNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEE 346
Query: 568 AIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGED 603
A++DYE + + +E + L AQ++LKK + +D
Sbjct: 347 AVRDYEK-VYQTEKTKEHKQLLKNAQLELKKSKRKD 381
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 713 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-15 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 2e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-10 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-10 | |
| cd02984 | 97 | cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int | 1e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-09 | |
| PTZ00051 | 98 | PTZ00051, PTZ00051, thioredoxin; Provisional | 7e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-09 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 1e-08 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-05 | |
| pfam00085 | 104 | pfam00085, Thioredoxin, Thioredoxin | 1e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-04 | |
| smart01043 | 145 | smart01043, BTAD, Bacterial transcriptional activa | 1e-04 | |
| TIGR01068 | 101 | TIGR01068, thioredoxin, thioredoxin | 3e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 8e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 4e-15
Identities = 31/97 (31%), Positives = 58/97 (59%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
E L +GN Y +++AL Y++A+ ++ A N +AA LG+ EAL + ++A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ +DP +A++ L + Y++LG+ E+A+ Y+K+ L
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-14
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 620 ERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYI 672
E F + S VV F C K + ++E++ + +P V F+KV+V+++P +
Sbjct: 1 EEFEELIKSAKPVVVDFWAPWCGPC-----KAIAPVLEELAEEYPKVKFVKVDVDENPEL 55
Query: 673 AKSEGVSSIPAFKIYKNGSRVKEIPG-HQCELLEKSVK 709
A+ GV SIP F +KNG V + G E LE+ ++
Sbjct: 56 AEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 8e-13
Identities = 60/265 (22%), Positives = 100/265 (37%), Gaps = 35/265 (13%)
Query: 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEA 367
A+++ K A++ DP A L +Y LG+ A +K+ SL NQ A A
Sbjct: 40 AAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99
Query: 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYN 427
++ +L E + A ++ AL+ A L L + + A SY
Sbjct: 100 YLL----------QGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYE 149
Query: 428 KSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487
++ GL AQ+ +A RF++A + DP N
Sbjct: 150 QALAIDPRSLYAKLGL----------AQLALAENRFDEARALIDEVLTADPGN------- 192
Query: 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV 547
A+ L+G+LL + A AY + + N +L A + G++E+A
Sbjct: 193 --VDALL---LKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE 247
Query: 548 EDCTAALIVMPSYSKARLEAAIQDY 572
+ A L P+ A A+ D+
Sbjct: 248 KHADALLKKAPNSPLAHYLKALVDF 272
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 84/382 (21%), Positives = 131/382 (34%), Gaps = 58/382 (15%)
Query: 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321
L G+ + E ALA Y +AIA+ + + LI G EA ++
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
Query: 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK--AEALHKHLTKCNEAR 379
P AH+ A++ F+ E A + + A + A A A L +A
Sbjct: 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315
Query: 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTK 439
+ N +LK N + Q L A LRL R EA + + +
Sbjct: 316 QY--LNQILKYAPN--------SHQARRLLASIQLRLGRVDEAIATLSPA-LGLDPDDPA 364
Query: 440 LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN-----------------KE 482
L G AYL A G FE A + A ++DP N E
Sbjct: 365 ALSLLGEAYL---------ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415
Query: 483 VIKGVKMAKAMASARLRGNLLF-----KASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537
I ++ A + R +LL ++ ++ +A A + + + N+ L A
Sbjct: 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475
Query: 538 SKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEV 585
G KA E AL + P + A + AIQ +E ++ P N
Sbjct: 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535
Query: 586 GRALFEAQVQLKKQRGEDVKDM 607
AL + L+ E+
Sbjct: 536 ILALAG--LYLRTGNEEEAVAW 555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-10
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ-IEALVEC 316
+ E LK +GN + +++A+ Y++A+ ++ A N + A + LG+ EAL +
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 317 KEAIRIDP 324
++A+ +DP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.2 bits (144), Expect = 9e-10
Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 27/309 (8%)
Query: 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI-EALVECKEAIRIDPCYHRA--H 330
ALA+ A+A ++A AL+ L ++ EAL +EA+ + P A
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE 390
LA+ +LG E+A+ +K+ L ++A+A L L ++ + L+
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEA-----LLNLGLLLEALGKYEEALEL 117
Query: 391 TQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLL 450
+ ++ D L AL L ++EA + Y K+ + E A L
Sbjct: 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL-------AEAL 170
Query: 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYK 510
+ + A GR+E+A++ + A +++P++ G L K KY+
Sbjct: 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEAL-----------LNLGLLYLKLGKYE 219
Query: 511 EACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQ 570
EA Y + LE + N+ L N A +LG+YE+A+E AL + P A +
Sbjct: 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDL-YNLGLALLL 278
Query: 571 DYEMLIREI 579
+ +
Sbjct: 279 LLAEALELL 287
|
Length = 291 |
| >gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 618 SNERFRHFVTSPG--MAVVLF-CSKAEH-KQVLQLMEQVCK-RFPSVNFLKVEVEDHPYI 672
S E F + S + V+ F AE KQ+ Q+ E++ K FPSV FL +E E+ P I
Sbjct: 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI 60
Query: 673 AKSEGVSSIPAFKIYKNGSRVKEIPG 698
++ ++++P F ++NG+ V + G
Sbjct: 61 SEKFEITAVPTFVFFRNGTIVDRVSG 86
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
GNL +K Y EA Y + LE + N+ N AA KLG+YE+A+ED AL + P
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65
Query: 559 SYSKA------------RLEAAIQDYEMLIR 577
+KA + E A++ YE +
Sbjct: 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG-QYEKAVEDCTAAL 554
+ GN LFK Y EA AY + LE + N+ N A KLG YE+A+ED AL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 555 IVMP 558
+ P
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-09
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 616 VSSNERFRHFVTSPGMAVVLF----CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY 671
V+S F ++ + +V F C K++ E+ K + + F+KV+V++
Sbjct: 5 VTSQAEFESTLSQNELVIVDFYAEWCGPC--KRIAPFYEECSKEYTKMVFVKVDVDELSE 62
Query: 672 IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLE 705
+A+ E ++S+P FK++KNGS V + G E L+
Sbjct: 63 VAEKENITSMPTFKVFKNGSVVDTLLGANDEALK 96
|
Length = 98 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-09
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+Y G +++A++ + A ++DP+N + +K KY+EA
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAY------------YNLAAAYYKLGKYEEA 53
Query: 513 CYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
Y + LE + N+ N KLG+YE+A+E AL + P+
Sbjct: 54 LEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAI 320
+L+ EA+ F A+ LY +AI ++ + A ++++ A I LG EA+ + +AI
Sbjct: 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI 63
Query: 321 RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
+DP +A+ R +L E + A + +K +SLA
Sbjct: 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100
|
Length = 356 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 466 AVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525
V+ A + +ID ++ + + K A + +GN ++ + +A YS+ +E +
Sbjct: 100 PVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP- 158
Query: 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568
+ V NRAAC + LG +EK VED TAAL + P YSKA A
Sbjct: 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (132), Expect = 3e-08
Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 17/248 (6%)
Query: 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIA--INSSKATYRSNKSAALIGLGRQIEA 312
N L + R E+AL L ++A+ + + A N L LG+ EA
Sbjct: 55 NSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114
Query: 313 LVECKEAIRIDPCYHRAHHRLAM-LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371
L ++A+ +DP A LA+ + LG+ E+A+ Y+K A + D E
Sbjct: 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK----ALELDPELNELAEAL 170
Query: 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431
L L R+ + L+ + + D + L+L +++EA + Y K+ +
Sbjct: 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230
Query: 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
+ L+ LA + + GR+E+A++ + A ++DP+ + + +
Sbjct: 231 LDPDNAEALYNLA----------LLLLELGRYEEALEALEKALELDPDLYNLGLALLLLL 280
Query: 492 AMASARLR 499
A A L
Sbjct: 281 AEALELLE 288
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 33/281 (11%)
Query: 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331
E+A+A ++A +N + + +G G+ +AL EA P A
Sbjct: 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605
Query: 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEA-------RELKRW 384
L G+ KAVS +KK +L +A + N A R L+
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH------DSY--NKSPKFCLEY 436
D + + + A + L+ Q + A D Y K ++
Sbjct: 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725
Query: 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496
Y K A + I + +A+G +AVKT + + PN+ A
Sbjct: 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---------------A 770
Query: 497 RLR---GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534
LR L Y +A Y ++ N+V+L N A
Sbjct: 771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLA 811
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHY 350
A N AL LG EA+ ++A+ +DP A++ LA+ Y +LG+ E+A+
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 351 KKSSSLA 357
+K+ L
Sbjct: 62 EKALELD 68
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321
LK GN+AY F A+ LY +AI Y SN++A LG + + + A+
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYY-SNRAACHNALGDWEKVVEDTTAALE 188
Query: 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+DP Y +A +R A Y LG+ A+ S + ++ A+A+ + L K E++
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESK 246
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
V F KV+ +++P +A GV P K +KNG +V + G
Sbjct: 51 VKFAKVDADENPDLASEYGVRGFPTIKFFKNGKKVSDYVG 90
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 22/120 (18%)
Query: 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463
+ +L + EA + Y K+ LE A A Y G++
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKA----LELDPDN------ADAYYNLAAAYYKLGKY 50
Query: 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523
E+A++ + A ++DP+N + G +K KY+EA AY + LE +
Sbjct: 51 EEALEDYEKALELDPDNAKAY------------YNLGLAYYKLGKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
N LG EAL ++A+ +DP A++ LA Y++LG+ E+A+ Y+K+ L
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 358 N 358
Sbjct: 65 P 65
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 289 NSSKATYRSNKSAALIGLGRQ-------IEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341
S+ T R+ + A + L +A ++A+ DP Y+ AH A Y +LG
Sbjct: 24 APSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG 83
Query: 342 EAEKAVSHYKKSSSLA-NQKDI 362
E + A Y+K+ SLA N D+
Sbjct: 84 ENDLADESYRKALSLAPNNGDV 105
|
Length = 250 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 46/237 (19%), Positives = 82/237 (34%), Gaps = 55/237 (23%)
Query: 251 ISSLNKLDPEELKFMG--NEAYNKAR-FEDALALYDRAIAINSSKATYRSNKSAALIGLG 307
+S LDP++ + EAY FE A +A ++ A R+ + + G
Sbjct: 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411
Query: 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEA 367
EA+ + + A ++DP RA L + Y R G+ +KA++ KK Q D
Sbjct: 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK--LEKKQPD------ 463
Query: 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYN 427
++ L L +A +++
Sbjct: 464 ----------------------------------NASLHNLLGAIYLGKGDLAKAREAFE 489
Query: 428 KSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484
K+ +++ L A++ I G +DA++ + IDP N I
Sbjct: 490 KALSIEPDFFPAAANL----------ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKFMGNEAYNKA---RFEDALALYDRAIAIN 289
+GN+ + G++ + + K LDP+ N A ++E+AL Y++A+ ++
Sbjct: 6 LGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
A N A LG+ EAL ++A+ +DP
Sbjct: 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350
AL+ LGR EAL + + +DP R H L +R G +A+ Y
Sbjct: 69 EALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAY 118
|
Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145 |
| >gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 654 KRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ V F+K+ V+++P IA G+ SIP ++KNG V G
Sbjct: 42 EYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVG 86
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 8e-04
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM-------LYFRLGEAEK 345
A +N + L LG EAL ++A+ + H A LY LG+ ++
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 346 AVSHYKKSSSLA 357
A+ + +K+ +L
Sbjct: 65 ALEYLEKALALR 76
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 312 ALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358
A +A+ DP + A+ LA+ Y +LGE EKA ++++ +L
Sbjct: 50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 0.002
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 11/165 (6%)
Query: 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI----------NSSKAT 294
G++ + + L K + EA L Y+ A+ + + A
Sbjct: 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAE 168
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDP-CYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
A L LGR EAL ++A++++P A L +LY +LG+ E+A+ +Y+K+
Sbjct: 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228
Query: 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398
L A L L+ L+ ++ + G
Sbjct: 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLG 273
|
Length = 291 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+ A +++ALA + A+A A AL+ GR EA + A+ DP
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
|
Length = 65 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560
L N KLG+Y++A+E AL + P+
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.95 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.87 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.85 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.83 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.83 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.83 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.83 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.8 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.78 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.72 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.71 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.7 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.68 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.65 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.65 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.63 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.63 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.61 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.6 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.54 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.53 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.52 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.51 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.5 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.47 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.46 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.46 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.42 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.41 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.39 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.33 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.32 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.31 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.31 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.28 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.25 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.24 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.24 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.22 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.21 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.19 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.17 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.15 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.15 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.13 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.13 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.11 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.11 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.11 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.1 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.1 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.09 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.08 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.07 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.07 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.06 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.03 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.03 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.02 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.02 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.01 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.01 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.98 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 98.98 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.97 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.96 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.94 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.94 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.94 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 98.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.91 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 98.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.9 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.89 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.84 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.84 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.83 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.81 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.8 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.79 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.78 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.74 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.71 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.7 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.7 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.68 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.65 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.63 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 98.63 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.59 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.58 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 98.57 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.56 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.55 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.5 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.49 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.48 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.48 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.48 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.46 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 98.46 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.45 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.45 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.44 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.44 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.43 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.43 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.37 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.37 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.34 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.31 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.29 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.26 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.26 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.22 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.21 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.18 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.15 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.11 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 98.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.1 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.09 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.08 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.07 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.04 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 98.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.01 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.99 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.95 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.94 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 97.94 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.91 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.9 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 97.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.84 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 97.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.81 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 97.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.8 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.8 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.79 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 97.77 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.77 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.73 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 97.68 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.67 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 97.66 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 97.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.64 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.63 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.6 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 97.59 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.57 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.52 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.52 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.49 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 97.47 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.46 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 97.46 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 97.46 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.43 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 97.43 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.42 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.42 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 97.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.37 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 97.35 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.31 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.3 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 97.3 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 97.29 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.27 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.27 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.25 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.23 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 97.19 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.1 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.08 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.06 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 97.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.05 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.01 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 97.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.99 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.97 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.93 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 96.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.87 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.85 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.85 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 96.85 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.8 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.78 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.77 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 96.77 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.75 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.73 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 96.72 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.72 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 96.68 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 96.66 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.65 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 96.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.63 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 96.58 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.58 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.56 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 96.54 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.54 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.52 | |
| KOG3171 | 273 | consensus Conserved phosducin-like protein [Signal | 96.5 | |
| smart00594 | 122 | UAS UAS domain. | 96.49 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 96.48 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.48 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.47 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.37 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.36 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 96.36 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.34 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.31 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 96.31 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 96.25 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 96.22 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.18 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.15 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 96.11 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 96.1 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.06 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 96.02 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.0 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 95.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.97 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.97 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 95.93 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 95.89 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 95.88 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 95.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.87 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.86 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 95.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.81 | |
| KOG3170 | 240 | consensus Conserved phosducin-like protein [Signal | 95.71 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 95.64 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.58 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.49 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 95.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.47 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 95.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.42 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.41 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 95.4 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 95.36 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.36 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 95.3 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.1 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 95.08 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 95.0 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.98 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 94.93 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.93 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.9 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 94.82 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.71 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.71 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.69 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.65 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 94.64 | |
| PLN02412 | 167 | probable glutathione peroxidase | 94.57 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.54 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 94.52 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 94.51 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 94.5 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 94.46 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.4 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.32 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.28 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.26 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.11 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.08 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.06 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.03 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 94.02 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.99 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.98 | |
| cd03074 | 120 | PDI_b'_Calsequestrin_C Protein Disulfide Isomerase | 93.86 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 93.85 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.66 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.55 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 93.55 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.54 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.47 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 93.42 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.41 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.31 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.2 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 93.18 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 93.1 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.83 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=354.11 Aligned_cols=360 Identities=19% Similarity=0.203 Sum_probs=338.3
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALA 280 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~ 280 (713)
+++|+..|+.+++++|+ +.++|. -+|.++...+ +.|.+++.. ++|....+...+|..+...|+..+|..
T Consensus 132 ~~~al~~y~~aiel~p~--fida~i----nla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPK--FIDAYI----NLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HHHHHHHHHHHHhcCch--hhHHHh----hHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 34999999999999964 556554 2777777777 667777766 899999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 281 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|.+|++.+|..+.+|.+||.++...|+...|+..|++|++++|+..++|++||.+|...+.+++|+.+|.+|+. +.|+
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-lrpn 284 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-LRPN 284 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+. ..+.+++.+|.+.|..+-||..|++++.+.|... .+|.++|.++...|+..+|+.+|.+++.+.|.
T Consensus 285 ~A------~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~----- 352 (966)
T KOG4626|consen 285 HA------VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCPN----- 352 (966)
T ss_pred ch------hhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-----
Confidence 84 7788889999999999999999999999999995 99999999999999999999999999999996
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
.+++++++|.+|..+|.+++|..+|.++++..|....+.. ++|.+|.++|++++|+.+|++++
T Consensus 353 -----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n------------NLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 353 -----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN------------NLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred -----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh------------hHHHHHHhcccHHHHHHHHHHHH
Confidence 4668999999999999999999999999999999999988 89999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.+.|..++++.|+|.+|..+|+.+.|+.+|.+|+.++|.+++++. .+|++.|+++|+++|+.+++..+
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 999999999999999999999999999999999999999998876 89999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 005125 589 LFEAQVQLKKQRG 601 (713)
Q Consensus 589 l~~~~~~l~~~~~ 601 (713)
+.-+.+-+..|..
T Consensus 496 llh~lq~vcdw~D 508 (966)
T KOG4626|consen 496 LLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHhcccc
Confidence 9888888877755
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=322.79 Aligned_cols=351 Identities=20% Similarity=0.186 Sum_probs=308.9
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++.+..-..+++.+|. ..+ ...-+|+++...| +.|...+.. +.|+..++|..+|.++...|+.+.|..+
T Consensus 99 d~s~a~~~~a~r~~~q--~ae----~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 99 DKSSAGSLLAIRKNPQ--GAE----AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred hhhhhhhhhhhhccch--HHH----HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHH
Confidence 3555566667777763 222 3334788888888 567777776 7888889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|.++++++|+...+...+|.++..+|+..+|..+|.+|++.+|..+.+|.+||.++..+|+...|+.+|++|+. ++|..
T Consensus 173 ~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-ldP~f 251 (966)
T KOG4626|consen 173 FFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-LDPNF 251 (966)
T ss_pred HHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-CCCcc
Confidence 99999999988888888899888899999999999999999998888999999999999999999999999999 99987
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
+.++++++.++.+++.+++|+..|.+++.+.|.+. .++.++|.+|..+|..+-|+.+|++++++.|..
T Consensus 252 ------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F----- 319 (966)
T KOG4626|consen 252 ------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-VAHGNLACIYYEQGLLDLAIDTYKRALELQPNF----- 319 (966)
T ss_pred ------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-hhccceEEEEeccccHHHHHHHHHHHHhcCCCc-----
Confidence 47888889999999999999999999999998885 788888999999999999999999999988864
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
++++.++|.++...|+..+|..+|.+|+.+.|+++++.+ ++|+++..+|.+++|...|.++++
T Consensus 320 -----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~------------NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 320 -----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN------------NLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred -----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHhccchHHHHHHHHHHh
Confidence 458889999999999999999999999999999998887 899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
..|+.+.++.|||.+|.++|++++|+.+|+.|+++.|..++++. ..|+++|.+|+.++|...++..+|
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 99999999999999999999999999999999999999999987 899999999999999999998888
Q ss_pred HHHH
Q 005125 590 FEAQ 593 (713)
Q Consensus 590 ~~~~ 593 (713)
..+.
T Consensus 463 asi~ 466 (966)
T KOG4626|consen 463 ASIY 466 (966)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=262.88 Aligned_cols=390 Identities=14% Similarity=0.091 Sum_probs=324.7
Q ss_pred CCCCcccccccCCccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhccCCCchhhhhccccCCCCCCccccc
Q 005125 56 KPPAENSKKRRSSSAENVLIGTANVAKPSPKPNQTLPRRTSSEPPRLSTSQQKRHNRRSSDAARSSTSSSTSSGLTNASK 135 (713)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (713)
-+|||||.+++.+.. .+.++..+| .++.++|.++.+||++++ .+++++..+.++++++.+.++.++.++
T Consensus 77 ~aRPGtS~k~p~t~~------~g~sq~~rp---~t~aGrpv~g~~rp~~~S--~rpGsm~qA~rt~rta~tar~~~S~sg 145 (478)
T KOG1129|consen 77 AARPGTSIKTPFTPR------PGTSQRARP---ATSAGRPVAGSSRPRLNS--SRPGSMAQARRTTRTARTARSLGSRSG 145 (478)
T ss_pred CCCCCCcccCCCCCC------CCCchhhcc---hhhcCCCCccccCccccC--CCCccHHhhccCccccccccccccccc
Confidence 366999999988776 235566677 788999999999999877 678899999999999999888877777
Q ss_pred chhhhcccCCccccccccccccccccccccccccccceeccCCCccCCCCcccccccCCcccccCCCCCchhHHHHHHHh
Q 005125 136 IQDDKRKLSKYPTCNSLELSTVVITSDYQQTNDGKRLVRATSSNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYK 215 (713)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~g~~~~~~~~~~~~~Ai~~~~k 215 (713)
+. .+....+|.+ ...+.++..+..|+..+..-..+......++.+. ..|.++|-.....
T Consensus 146 r~------------~RlgtaSmaa-------~~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyh--enDv~~aH~~~~~ 204 (478)
T KOG1129|consen 146 RA------------SRLGTASMAA-------FNDGKFYNLSRLNPTKYAERPTLVKALFEYLFYH--ENDVQKAHSLCQA 204 (478)
T ss_pred hh------------hhhhhhhhhc-------cCCcceeehhhcCchhhccChHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 66 5556666666 3355788888888888777665554444444432 1223344444443
Q ss_pred hhhcC---C--CccccccccccccchhhhhcCCC--CchhhhHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005125 216 NLQDV---P--KQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS--LNKLDPEELKFMGNEAYNKARFEDALALYDRAI 286 (713)
Q Consensus 216 al~~~---P--~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 286 (713)
.++++ | +......|| |+..+|.||.++| .+|...++. .....++.+..++.+|.+..+.+.|+..|.+.+
T Consensus 205 ~~~~~~a~~s~~~~~~~dww-Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 205 VLEVERAKPSGSTGCTLDWW-WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHhccccccccchHhHH-HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 33332 2 344556688 9999999999999 777777777 677889999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
+..|.+...+..+|.++..++++++|+++|+.+++.+|.+.++...+|.-|+..++++-|+.+|++.++ +.-.+
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~s----- 357 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQS----- 357 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55444
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCc
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGG 446 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 446 (713)
++++.++|.|++..++++-++..|++|+....+. ...
T Consensus 358 ------------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~-------~~a 394 (478)
T KOG1129|consen 358 ------------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP-------GQA 394 (478)
T ss_pred ------------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc-------chh
Confidence 5899999999999999999999999998765432 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+++|+++|.+....||+.-|..+|+-++..++++.++++ |+|.+..+.|+.++|..++..|-...|+-
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn------------NLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN------------NLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH------------hHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 889999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005125 527 SVLLCNRAACRSK 539 (713)
Q Consensus 527 ~~~~~~la~~~~~ 539 (713)
.+..+|++.+-..
T Consensus 463 ~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 463 AEVTTNLQFMSVH 475 (478)
T ss_pred cccccceeEEeee
Confidence 9888888755433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=283.92 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL 449 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (713)
.+..++..+..+|++++|+..+++++.++|... ..|..+|.++...|++++|+.+|++++..+|+ ++.+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVT-QSYIKRASMNLELGDPDKAEEDFDKALKLNSE----------DPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHH
Confidence 345555556666666666666666666666553 55666666666666666666666666666553 3446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
++.+|.++...|++++|+.+|++++.++|++...+. ++|.++..+|++++|+..|++++...|+++.+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~------------~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI------------QLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 666666666666666666666666666666665554 46666666677777777777666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------------------HHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-------------------RLEAAIQDYEMLIREIPGNEEVGRALF 590 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~ 590 (713)
+..+|.++..+|++++|+..|+++++++|+.... .+++|+..|++++.++|++..+...+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6666777766777777777777766666653211 015566666666666666665554444
Q ss_pred HH
Q 005125 591 EA 592 (713)
Q Consensus 591 ~~ 592 (713)
.+
T Consensus 550 ~~ 551 (615)
T TIGR00990 550 QL 551 (615)
T ss_pred HH
Confidence 33
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=279.34 Aligned_cols=341 Identities=13% Similarity=0.116 Sum_probs=272.5
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+.+|++++.+.|++. ....+|.++..++ ++|+..+.+ ++|+++.+|+.+|.+|...|++++|+..
T Consensus 144 ~~Ai~~y~~al~~~p~~~-------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 144 NKAIKLYSKAIECKPDPV-------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHHHHHHHHHHhcCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 499999999999998532 2234788888888 568888777 8899999999999999999998888754
Q ss_pred HHHH----------------------------------------------------------------------------
Q 005125 282 YDRA---------------------------------------------------------------------------- 285 (713)
Q Consensus 282 ~~~a---------------------------------------------------------------------------- 285 (713)
|..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 4332
Q ss_pred ------------------------HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 286 ------------------------IAI---NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 286 ------------------------l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++. .|....++..+|.++..+|++++|+..|+++++++|++..+|..+|.++.
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL 376 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 211 24455677788888888899999999999999989988888889999998
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
.+|++++|+.+|++++. .+|++. ..++.++..+...|++++|+..|++++.++|++. ..+..+|.++..+|+
T Consensus 377 ~~g~~~eA~~~~~~al~-~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~-~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALK-LNSEDP------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI-FSHIQLGVTQYKEGS 448 (615)
T ss_pred HCCCHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH-HHHHHHHHHHHHCCC
Confidence 99999999999999888 888874 5667788888888999999999999999988875 678888999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+++|+..|++++...|+ .+.++..+|.++...|++++|+..|++++.++|.+...+... ..+..
T Consensus 449 ~~eA~~~~~~al~~~P~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~------~~l~~ 512 (615)
T TIGR00990 449 IASSMATFRRCKKNFPE----------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV------LPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH------HHHHH
Confidence 99999999998887774 456788889999999999999999999999988754433210 01112
Q ss_pred HHHHH-HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHH
Q 005125 499 RGNLL-FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----EAAIQDYE 573 (713)
Q Consensus 499 lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~~A~~~~~ 573 (713)
.+.++ ...|++++|+.+|++++.++|++..++..+|.++..+|++++|+.+|++++++.+.....+. .+|.....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~ 592 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQI 592 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33334 34799999999999999999999999999999999999999999999999999887554322 45554444
Q ss_pred HHHHh
Q 005125 574 MLIRE 578 (713)
Q Consensus 574 ~al~~ 578 (713)
++.+.
T Consensus 593 ~~~~~ 597 (615)
T TIGR00990 593 QVQED 597 (615)
T ss_pred HHHHH
Confidence 44444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=274.98 Aligned_cols=341 Identities=12% Similarity=0.099 Sum_probs=304.4
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALY 282 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 282 (713)
+|...++.++...|.+. . .+..+|.+....| ++|...+++ .+|.+++++..+|..+...|++++|+..|
T Consensus 60 ~A~~l~~~~l~~~p~~~--~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 60 VGLTLLSDRVLTAKNGR--D----LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hhHHHhHHHHHhCCCch--h----HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999997532 3 3445666666666 668888888 89999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 283 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+++++++|++..++..++.++...|++++|+..+++++...|++..++..++ .+...|++++|+..+++++. .+|...
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~-~~~~~~ 211 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP-FFALER 211 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh-cCCCcc
Confidence 9999999999999999999999999999999999999999999998887765 48899999999999999988 765332
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH----HHHHhhccccCChhhHH
Q 005125 363 AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE----AHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~ 438 (713)
. ......+..+...|++++|+..+++++...|++. .++..+|.+|...|++++ |+..|++++.+.|+
T Consensus 212 ~-----~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~-~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~--- 282 (656)
T PRK15174 212 Q-----ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA-ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD--- 282 (656)
T ss_pred h-----hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---
Confidence 1 1223456677889999999999999999999985 888999999999999996 89999999999995
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
++.++..+|.++...|++++|+..+++++.++|+++.++. .+|.++...|++++|+..|++
T Consensus 283 -------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~------------~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 283 -------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA------------MYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHH
Confidence 4568899999999999999999999999999999998887 699999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~ 584 (713)
+++.+|+++..+..+|.++...|++++|+..|+++++.+|++....+++|+..|.+++...+....
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~ 409 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPE 409 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccc
Confidence 999999998888888999999999999999999999999999988889999999999987755543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=262.48 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+++..+|..|+.+++|++|..+|+.+-++.|......-....+++.+.+--+--...+..+..+|+.++.|..+|+||..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 45899999999999999999999999999999888888888999999888877778888999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
+++++.|+++|++|++ ++|... .++...+..+.....++.|..+|+++|..+|.+. .+|+.+|.+|.+++++
T Consensus 434 Qkdh~~Aik~f~RAiQ-ldp~fa------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-nAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQ-LDPRFA------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY-NAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhHHHHHHHHHHHhhc-cCCccc------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh-HHHHhhhhheeccchh
Confidence 9999999999999999 999884 7788889999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
+.|+-+|++|+.++|. +..++..+|.++.+.|+.++|+.+|++|+.++|.++...+ ..
T Consensus 506 e~Ae~~fqkA~~INP~----------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~------------~~ 563 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPS----------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY------------HR 563 (638)
T ss_pred hHHHHHHHhhhcCCcc----------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH------------HH
Confidence 9999999999999994 5668899999999999999999999999999999998887 69
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
|.+++..+++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|.-|.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999999999999999998665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=273.07 Aligned_cols=310 Identities=14% Similarity=0.065 Sum_probs=282.1
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++|..+++. ..|.++++++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 557777666 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
++|++..++..+|.++...|++++|+..+++++. ..|++.... ... ..+...|++++|+..+++++...|..
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~-~~P~~~~a~------~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ-EVPPRGDMI------ATC-LSFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCCCCHHHH------HHH-HHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999998 888875322 122 23677899999999999999988755
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhC
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED----AVKTAQDAAQID 477 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~ 477 (713)
....+..++.++...|++++|+..|++++...|+ .+.+++.+|.+|...|++++ |+..|+++++++
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLD----------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 4455667789999999999999999999999885 46688999999999999986 899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
|++..++. .+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|++++..+
T Consensus 281 P~~~~a~~------------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 281 SDNVRIVT------------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998887 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 558 PSYSKARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 558 p~~~~a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
|++...+. ++|+..|+++++.+|++..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 99865432 9999999999999998654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=226.97 Aligned_cols=339 Identities=15% Similarity=0.214 Sum_probs=302.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.+++-++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+.++|++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHH---------HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA---------EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
|.++.++|++++|...|++++. .+|.+.... .....+......+...|++..++......|++.|-+. .
T Consensus 113 g~vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda-~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA-S 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh-H
Confidence 9999999999999999999999 888654221 1222333444556667899999999999999999885 7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
++...+.||...|+...|+..++.+-++..+ +.+.++.++.+++..|+.+.++...+++|+++|++..++
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D----------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD----------NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc----------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 8889999999999999999999999888775 556889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL----LCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+..++++.....-+......++|.++++.+++.++.+|..+.+ +..+..|+..-|++.+|+..+.++|+++|++
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d 340 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH
Confidence 999999988888888888999999999999999999999985543 4457889999999999999999999999999
Q ss_pred hHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005125 561 SKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV 604 (713)
Q Consensus 561 ~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~ 604 (713)
..++. +.||..|++|++++++|..+...+.+++...+.....++
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchH
Confidence 87766 899999999999999999999999988876665444333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-27 Score=280.16 Aligned_cols=301 Identities=13% Similarity=0.097 Sum_probs=223.1
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+..|+++++.+|...... ...+..+....+ ++|+..+++ .+|.++.+++.+|.+++..|++++|+..
T Consensus 129 ~eA~~~~~~~l~~~p~~~~la-----~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 129 EEALASYDKLFNGAPPELDLA-----VEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred HHHHHHHHHHccCCCCChHHH-----HHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 499999999999987432110 011222222223 668888887 7899999999999999999999999999
Q ss_pred HHHHHHhCC----------------------------------CCHH--------------------HHHHHHHHHHHcC
Q 005125 282 YDRAIAINS----------------------------------SKAT--------------------YRSNKSAALIGLG 307 (713)
Q Consensus 282 ~~~al~~~p----------------------------------~~~~--------------------~~~~la~~~~~~g 307 (713)
+++++...+ +... ....+|.++...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 999865322 1110 0013478889999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH--HH------HHHHHHHHHHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK--AE------ALHKHLTKCNEAR 379 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~--~~------~~~~~~~~~~~~~ 379 (713)
++++|+..|+++++++|+++.++..+|.+|..+|++++|+.+|+++++ .+|++... +. .....+..+..+.
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~-~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA-LDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99876421 11 1223345678888
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc---------------
Q 005125 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA--------------- 444 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------------- 444 (713)
..|++++|+..|++++..+|++. .++..+|.++...|++++|+.+|+++++..|++...+....
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999885 78889999999999999999999999999887544321110
Q ss_pred -----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 005125 445 -----------------GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS 507 (713)
Q Consensus 445 -----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 507 (713)
.....+..+|.++...|++++|+..|+++++++|+++.++. .+|.++...|
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~------------~LA~~~~~~G 509 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY------------RLAQDLRQAG 509 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcC
Confidence 00123344666677777777777777777777777776655 3455555555
Q ss_pred cHHHHHHHHHHHhccCCCC
Q 005125 508 KYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 508 ~~~~A~~~~~~al~~~p~~ 526 (713)
++++|+..|+++++.+|++
T Consensus 510 ~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPND 528 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 5555555555554444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-27 Score=279.75 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=270.7
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--------------H
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKAT--------------Y 295 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 295 (713)
.+|.++...+ ++|+..+++ .+|.+++++..+|.+++..|++++|+.+|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3577777777 668888877 78999999999999999999999999999999999997642 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH------
Q 005125 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH------ 369 (713)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~------ 369 (713)
...+|.++...|++++|+..|++++.++|++..++..+|.+|...|++++|+.+|+++++ ++|.+......+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~-~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR-MDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Confidence 235588899999999999999999999999999999999999999999999999999999 9998764332221
Q ss_pred ------------------------------HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 370 ------------------------------KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 370 ------------------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
.+...+..+...|++++|+..|+++++.+|++. .+++.+|.+|...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-WLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCH
Confidence 122345667788999999999999999999985 7889999999999999
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA------------------------- 474 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------- 474 (713)
++|+..|++++...|++.. .++.++..+...+++++|+.+++++.
T Consensus 512 ~~A~~~l~~al~~~P~~~~----------~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPE----------QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHH----------HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 9999999999998886433 34444444444444444444444321
Q ss_pred ---------------HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005125 475 ---------------QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK 539 (713)
Q Consensus 475 ---------------~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 539 (713)
+..|.++..+. .+|.++...|++++|+..|+++++.+|+++.++.+++.+|..
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~------------~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDL------------TLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 13555555444 699999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 540 LGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 540 ~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
.|++++|++.++++++..|++..++. ++|++.|++++...|+++.
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 99999999999999999999877654 8899999999998876643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=276.66 Aligned_cols=360 Identities=17% Similarity=0.156 Sum_probs=227.9
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALA 280 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~ 280 (713)
.++|+.+|+++++.+|... . ....++.++...+ ++|...++. ..|.+..++..++..+...|++++|+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~~--~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDFF--P----AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHHHHHHHHHHHhhCCCcH--H----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3488888888888886421 2 2233667777666 557777766 567778888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 281 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|++++..+|.+...+..++.++...|++++|+..+++++...|.+..+|..+|.+|...|++++|+.+|++++. ..|.
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 633 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA-LQPD 633 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Confidence 888888888877777777888888888888888888888777777777788888888888888888888888777 7776
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+. ..+...+..+...|++++|+..+++++...|++. ..+..++.++...|++++|+..++.+....|.
T Consensus 634 ~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 701 (899)
T TIGR02917 634 SA------LALLLLADAYAVMKNYAKAITSLKRALELKPDNT-EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK----- 701 (899)
T ss_pred Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----
Confidence 64 3455666777777777777777777777777764 55666666666666666666666666555442
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------HHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK----------------------AMASARL 498 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----------------------~~~~~~~ 498 (713)
.+..+..+|.++...|++++|+..|++++...|++. .+..+.... ....+..
T Consensus 702 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 702 -----AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred -----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 233455555555566666666666666555555542 121000000 0001114
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------H
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------E 566 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~ 566 (713)
+|.++...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++++.|+++..+. +
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555555555555555555555555555 4555555555555555544432 5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 567 AAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 567 ~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
+|+..|+++++.+|.++.+...+..
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHH
Confidence 5555555555555555555444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=231.07 Aligned_cols=317 Identities=20% Similarity=0.228 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+..+...|+-+++.|+|++||.+|.+||++.|+.+..|.+++.||...|+|++.++.+.++++++|++..++++.+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHH------------------HHHhh---------hhc-------ccc-----------------------
Q 005125 339 RLGEAEKAVSHY------------------KKSSS---------LAN-------QKD----------------------- 361 (713)
Q Consensus 339 ~~g~~~~A~~~~------------------~~al~---------~~~-------p~~----------------------- 361 (713)
.+|++.+|+... ++.+. .+. |..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999999998643 11111 000 000
Q ss_pred ---HHHHHH------------------------------------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005125 362 ---IAKAEA------------------------------------------LHKHLTKCNEARELKRWNDLLKETQNVIS 396 (713)
Q Consensus 362 ---~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 396 (713)
...... ..+++..+.-+.-.|+...|...++.+|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 000000 11222223333445788888889999999
Q ss_pred cCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 397 FGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 397 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
++|... ..|..+|.+|....+.++-...|.+|..++|+ ++++|+.+|.+++-++++++|+..|++++.+
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC----------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999886 66999999999999999999999999999995 5679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 477 DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 477 ~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+|.+..++. +++.+++++++++++...|+.++..-|+.+++|...|.++..+++++.|++.|.+|+++
T Consensus 424 ~pe~~~~~i------------Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 424 DPENAYAYI------------QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred ChhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999988887 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------ChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 557 MPS------YSKARL-------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598 (713)
Q Consensus 557 ~p~------~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 598 (713)
.|. ++..+. ..|+..+++|+++||....+...|.....+..+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 998 333222 899999999999999999999988876665443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=272.69 Aligned_cols=348 Identities=18% Similarity=0.197 Sum_probs=290.7
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALA 280 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~ 280 (713)
.++|+..+++.+...|.. .. ....+|.++...+ ++|...+.+ ..|.++.+++.+|..+...|++++|+.
T Consensus 447 ~~~A~~~~~~~~~~~~~~--~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDN--AS----LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHHHHHHHHHHHHhCCCC--cH----HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 459999999999888742 22 3345788888888 668888887 789999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 281 LYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 281 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
.|+++++.+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.+|...|++++|+..+++++. ..|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 599 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD-AAPD 599 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+. ..+..++..+...|++++|+..|++++...|.+. ..+..+|.++...|++++|+.+|++++...|+
T Consensus 600 ~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 667 (899)
T TIGR02917 600 SP------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA-LALLLLADAYAVMKNYAKAITSLKRALELKPD----- 667 (899)
T ss_pred CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Confidence 74 5677888999999999999999999999999885 78889999999999999999999999998885
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
+...+..++.++...|++++|+..++.+....|.+...+. .+|.++...|++++|+..|++++
T Consensus 668 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 668 -----NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE------------LEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH------------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999888776 36666666666666666666666
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
...|++ ..+..++.++...|++++|+..++++++.+|++..++. ++|+..|+++++..|+++.+...
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666654 55556666666666666666666666666666655444 56666666666666666555544
Q ss_pred HH
Q 005125 589 LF 590 (713)
Q Consensus 589 l~ 590 (713)
+.
T Consensus 810 l~ 811 (899)
T TIGR02917 810 LA 811 (899)
T ss_pred HH
Confidence 43
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=254.15 Aligned_cols=369 Identities=11% Similarity=0.029 Sum_probs=293.2
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+..|.++...+|.+. . ....++.++...+ ++|..++++ ..|.+++++..+|.++...|++++|+..
T Consensus 32 ~~A~~~~~~~~~~~~~~a--~----~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPA--R----GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHHHHHHHHHHhhCCCCH--H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 399999999998776422 2 2344788888888 668888888 8899999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL----- 356 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 356 (713)
++++++.+|+++. +..+|.++...|++++|+..++++++++|++..++..+|.++...+..++|+..++++...
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999999999999988888777644320
Q ss_pred ----------------------------------------hccccHHH-HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 357 ----------------------------------------ANQKDIAK-AEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 357 ----------------------------------------~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
..|.++.. .......+.....+...+++++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00000000 0001111111223457789999999999999
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+..+..+..+...+|.+|...|++++|+.+|++++...|.... ........++.++...|++++|+..++++..
T Consensus 265 ~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 265 AEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD------LSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC------CChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 9875443344555699999999999999999999887764311 1234566778889999999999999999999
Q ss_pred hCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKM---AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 476 ~~p~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
..|.....+..... -.....+..+|.++...|++++|++.+++++...|+++.++..+|.++...|++++|+..+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 88743211100000 000112236899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 553 ALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 553 al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
++.++|++...++ ++|+..++++++..|+++.+...
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999977666 89999999999999999976554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=217.57 Aligned_cols=329 Identities=24% Similarity=0.329 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
-+...|+..+..|+|+.|+.+|..+|.++|.+...+.++..+|..+|+|++|++.-.+.++++|+.+..|.++|..+..+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHH-------------------------------------------------
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKH------------------------------------------------- 371 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~------------------------------------------------- 371 (713)
|+|++|+..|.+.++ .+|++......+...
T Consensus 84 g~~~eA~~ay~~GL~-~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLE-KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhh-cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999999999999 998876432211110
Q ss_pred -----------------------------------------------------------------HHHHHHHHHhhcHHH
Q 005125 372 -----------------------------------------------------------------LTKCNEARELKRWND 386 (713)
Q Consensus 372 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 386 (713)
-.++.......++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 011222233345555
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 387 LLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
|++.|..++.++ .+. ..+.+.+.+|+..|.+.+.+.....+++...+....+. ..+..+..+|..|.++++++.|
T Consensus 243 a~q~y~~a~el~-~~i-t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k---lIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDI-TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK---LIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHhHh-hhh-HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH---HHHHHHHHhhhhhhhHHhHHHH
Confidence 666666666666 332 45555666666666666666666655543322111100 1234455578899999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMA---------------KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
+.+|++++..... ++....+... ......+..|+.++..|+|..|+..|.+||..+|+++.+|.
T Consensus 318 i~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 9999999986544 2222221111 12445567899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 596 (713)
|+|.||.++|.+..|+.+++.+++++|++..+|+ ++|++.|+++++++|++.++...+.++..++
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988 8999999999999999999999999888765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-23 Score=235.14 Aligned_cols=332 Identities=14% Similarity=0.092 Sum_probs=265.3
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++|+..+.. ..|..+.++..+|..+...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567777777 47788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH------H--------------------
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK------C-------------------- 375 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~------~-------------------- 375 (713)
.+|++.. +..+|.++...|++++|+..|+++++ +.|++......+...+.. +
T Consensus 112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~ 189 (765)
T PRK10049 112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEAD 189 (765)
T ss_pred hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999 99999999999999999999999999 999987543322211110 0
Q ss_pred ------HHH-----HHhhcH---HHHHHHHHHHHHcC---CCChH---HHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 376 ------NEA-----RELKRW---NDLLKETQNVISFG---ADSAP---QVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 376 ------~~~-----~~~~~~---~~A~~~~~~al~~~---p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
... ...+++ ++|+..++.+++.. |+..+ .+......++...|++++|+..|+++++..+.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 000 011223 67788888888653 33322 12222123446779999999999999887532
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK----EVIKGVKMAKAMASARLRGNLLFKASKYKE 511 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 511 (713)
. ...+...+|.+|...|++++|+.+|++++..+|.+. .... .++.++...|++++
T Consensus 270 ~---------P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~------------~L~~a~~~~g~~~e 328 (765)
T PRK10049 270 I---------PPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA------------DLFYSLLESENYPG 328 (765)
T ss_pred C---------CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH------------HHHHHHHhcccHHH
Confidence 1 112334469999999999999999999999887762 2222 57778899999999
Q ss_pred HHHHHHHHhccCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 512 ACYAYSEGLEHEAY---------------NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 512 A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
|+..++++....|. ...++..+|.++...|++++|++.+++++...|++..+++
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 99999999988763 2457789999999999999999999999999999988877
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 566 -EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 566 -~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
++|++.|++++.++|++..+...+......+.+|
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999999988766665555444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=206.72 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
+.++...|..++-.|++-.|...|..++. ++|.+. ..++.++..+....+-++....|.++..++|+++ .+|
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~-l~~~~~------~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-dvY 397 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIK-LDPAFN------SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-DVY 397 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHh-cCcccc------hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-chh
Confidence 45677778888889999999999999999 999874 3378889999999999999999999999999996 899
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
+.+|.+++-++++++|+..|++++.++|+ ++..+..++.+.++++++++++..|+.+.+..|+.++++.+
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe----------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPE----------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999996 56688999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACR-SKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.|.++..+++|++|++.|.+|+++.|. ++..+.+.|.+. .-.+++..|+..+++|+++||.
T Consensus 468 ------------fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 468 ------------FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred ------------HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 899999999999999999999999998 666666666543 3458999999999999999999
Q ss_pred ChHHHH------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 560 YSKARL------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 560 ~~~a~~------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
...++. ++|++.|++++.+.-...+..
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 888776 899999999988865554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=219.68 Aligned_cols=275 Identities=14% Similarity=0.085 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRLAM 335 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 335 (713)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3577779999999999999999999999999999999999999999999999999999998854322 357899999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh----HHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA----PQVYALQAE 411 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~la~ 411 (713)
+|...|++++|+..|+++++ ..|.+. ..+..++..+...|++++|+..++++++..|... ...+..+|.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~-~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVD-EGDFAE------GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHc-CCcchH------HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 99999999999999999998 777653 4567778889999999999999999999887653 235677899
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE-VIKGVKMA 490 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~ 490 (713)
++...|++++|+.+|+++++..|+ ...+++.+|.+|...|++++|+..|++++..+|.+.. .+.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~----- 253 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQ----------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP----- 253 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH-----
Confidence 999999999999999999998775 3457888999999999999999999999999887643 333
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.++.++...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++.+|++....
T Consensus 254 -------~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 254 -------KLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6899999999999999999999999997654 48999999999999999999999999999876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=218.63 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=261.3
Q ss_pred HHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 261 ELKFMGNEAYN--KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 261 ~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
.+..+|..|.. +-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-.+.|-..+..-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 45556655554 5567999999999777788888999999999999999999999999999999977666555666666
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
.+.+--+--...+..+. .+|..+ ..|...|..+.-+++++.|++.|+++++++|.+. .+|.++|.-+....+
T Consensus 399 HLq~~v~Ls~Laq~Li~-~~~~sP------esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-YayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLID-TDPNSP------ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-YAYTLLGHESIATEE 470 (638)
T ss_pred HHHhhHHHHHHHHHHHh-hCCCCc------HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-hhhhhcCChhhhhHH
Confidence 66554443344555666 888876 7788899999999999999999999999999986 899999999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+|.|..+|+.|+..+|.++. +|+.+|.+|.++++++.|.-+|++|++++|.+..... .
T Consensus 471 ~d~a~~~fr~Al~~~~rhYn----------AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~------------~ 528 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYN----------AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC------------H 528 (638)
T ss_pred HHhHHHHHHhhhcCCchhhH----------HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh------------h
Confidence 99999999999999998777 5677899999999999999999999999999988877 5
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------H
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------E 566 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~ 566 (713)
+|.++.+.|+.++|+..|++|+.++|.++...+..|.++..++++++|+..+++.-++-|+...+++ +
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 8999999999999999999999999999999999999999999999999999999999999988777 8
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 005125 567 AAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 567 ~A~~~~~~al~~~p~~~~~~ 586 (713)
.|+..|.-|+.++|.-..+.
T Consensus 609 ~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred HHHHhhHHHhcCCCccchhh
Confidence 99999999999999876643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-23 Score=232.04 Aligned_cols=277 Identities=13% Similarity=0.063 Sum_probs=222.1
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 278 ALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 278 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+...+.+++..+|. ++.+|+++|.++.. +++.+|+..+.+++...|++. .+..+|.++...|++++|+.+|++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44555555666677 88888888888887 788888888888888888754 366667777788889999888888877
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..|.+. .++..+..+...|++++|+..++++++.+|+.. ..+..++..+...|++++|+..|+++++..|+
T Consensus 538 -~~p~~~-------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 538 -HDMSNE-------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred -cCCCcH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 655542 345667778888888888888888888888774 55555666666779999999999999888873
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
+.++..+|.++.+.|++++|+..|++++.++|+++.++. ++|.++...|++++|+..
T Consensus 609 -----------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~------------nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 609 -----------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA------------ALGYALWDSGDIAQSREM 665 (987)
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHHHH
Confidence 346788889999999999999999999999999888877 688888899999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCH
Q 005125 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 516 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~ 583 (713)
|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+...... +.|.+.|.+++.++|...
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999988765544 777888888888888776
Q ss_pred HHHHHH
Q 005125 584 EVGRAL 589 (713)
Q Consensus 584 ~~~~~l 589 (713)
+....
T Consensus 746 -a~~~~ 750 (987)
T PRK09782 746 -IGLRS 750 (987)
T ss_pred -hcccc
Confidence 44443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=212.37 Aligned_cols=372 Identities=12% Similarity=0.056 Sum_probs=273.2
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhh--hcCCCC--chhhhHhh---cCCC-CHHHHHHHHHHHHHhcCHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNI--VKQPSG--EFPQCISS---LNKL-DPEELKFMGNEAYNKARFEDA 278 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~--~~~~~~--~a~~~~~~---~~~~-~~~~~~~lg~~~~~~g~~~~A 278 (713)
+.|...|.-++...|+ + .+.++|.. .+..++ .|..+|.. ++|. -++....+|.++...|+.+.|
T Consensus 147 ~~A~a~F~~Vl~~sp~----N----il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPD----N----ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHhhCCc----c----hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhH
Confidence 4566666666665553 1 22223332 223222 24555544 2222 234455556666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 279 LALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 279 ~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+..|.++++++|.++.++..||.+-.... .+..++..+.++...++.+|.++..|+..|+..|+|+.+......++.
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 66666666666666666666655554433 345566666666666666666666777777777777777776666665
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..-. .......++.+|..+..+|+|++|..+|.++++.++++....++.+|..|+..|+++.|+.+|++.+...|+
T Consensus 299 -~t~~---~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 299 -NTEN---KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred -hhhh---hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 3211 122335578889999999999999999999999999986577888999999999999999999999999886
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAG----RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA------------------- 492 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------- 492 (713)
. ...+..+|.+|...+ ..+.|..++.++++..|.+.++|..+..+..
T Consensus 375 ~----------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 375 N----------YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILE 444 (1018)
T ss_pred h----------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 4 447788899988875 6788999999999999999999887665432
Q ss_pred -------HHHHHHHHHHHHHcccHHHHHHHHHHHhcc-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 493 -------MASARLRGNLLFKASKYKEACYAYSEGLEH-----EAYN-----SVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 493 -------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
+..+.++|..++..|++.+|...|..|+.. +++. ....+|+|.|+..+++++.|.+.|..++.
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 556789999999999999999999999976 2222 23589999999999999999999999999
Q ss_pred hCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Q 005125 556 VMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600 (713)
Q Consensus 556 ~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 600 (713)
..|.+.++++ .+|...+..++..+..+++++..+..+......|.
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 9999999988 78999999999999999999988887766665554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=203.06 Aligned_cols=316 Identities=29% Similarity=0.373 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++-....|..++...+|.+|+..|..|++..|+++..|.+.+.++...+++++|...+++.+.++|.....+...+.|+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHc
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA--PQVYALQAEALLRL 416 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~ 416 (713)
.+++..+|.+.|+..-. . .-..++..+++.+....+.+ ..+..+.+.++...
T Consensus 129 a~~~~i~A~~~~~~~~~----~----------------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~ 182 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQA----Y----------------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL 182 (486)
T ss_pred hhHHHHHHHHHhhhhhh----h----------------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc
Confidence 99999999887773211 1 11122333333333322211 24556678999999
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
+++++|...--..+++++. +.++++..|.+++..++.+.|+.+|++++.++|++...-.......++..+
T Consensus 183 ~~~~~a~~ea~~ilkld~~----------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDAT----------NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred ccchhHHHHHHHHHhcccc----------hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 9999999999999998884 677899999999999999999999999999999999998888888889999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------- 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------- 565 (713)
...|+-.++.|+|.+|.++|..+|.++|++ +..|.++|.+...+|+..+|+..++.|+.++|.+..++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999976 678999999999999999999999999999999998887
Q ss_pred -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCccc-ccccccc
Q 005125 566 -----EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV-KDMKFGS 611 (713)
Q Consensus 566 -----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~g~ 611 (713)
++|+++|+++++...+ .+..+.|.+++..|++.+..+. ...|.+.
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~ 383 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGISR 383 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhhhh
Confidence 8999999999999887 8899999999999987666543 3344433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=228.98 Aligned_cols=274 Identities=7% Similarity=-0.057 Sum_probs=248.2
Q ss_pred cCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 254 LNKL--DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 254 ~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
..|. ++.+|+.+|.++.. +++++|+..|.+++...|++. ....+|.++...|++++|+..|++++...|.. ..++
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~ 546 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLL 546 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHH
Confidence 4566 99999999999987 899999999999999999754 46667888889999999999999988776654 5678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.+|.++...|++++|+.+|++++. .+|.+. ......+......|++++|+..++++++.+|+ +.++..+|.
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~-l~P~~~------~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~ 617 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQ-RGLGDN------ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARAT 617 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cCCccH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 999999999999999999999999 888774 22223344455669999999999999999996 589999999
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
++.+.|++++|+.+|++++.+.|+ ++.++.++|.++...|++++|+..|+++++++|+++.++.
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd----------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~------ 681 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN----------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR------ 681 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 999999999999999999999996 5668999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
++|.++...|++++|+.+|+++++++|+.+.+....|.+.....+++.|.+.+.++..++|+..
T Consensus 682 ------nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 682 ------QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred ------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 7999999999999999999999999999999999999999999999999999999999999876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-22 Score=212.34 Aligned_cols=295 Identities=11% Similarity=-0.001 Sum_probs=247.1
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK----ATYRSNKSAALIGL 306 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 306 (713)
.|..+...+ ++|...+.+ .+|.++.++..+|..+...|++++|+..+++++...+.. ..++..+|.+|...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344444444 456666666 667888899999999999999999999999998854332 35788999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 005125 307 GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWND 386 (713)
Q Consensus 307 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (713)
|++++|+..|+++++.+|.+..++..++.++...|++++|++.+++++. ..|.+... .....+..++..+...+++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRV-EIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchH-HHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999999999998 77765321 122345678888899999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 387 LLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
|+..++++++..|+.. .++..+|.+|...|++++|+..|++++...|.. ...++..++.+|...|++++|
T Consensus 199 A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 199 ARALLKKALAADPQCV-RASILLGDLALAQGDYAAAIEALERVEEQDPEY---------LSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHHHhHCcCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh---------HHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999998875 788889999999999999999999999887753 234678899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--cCCHH
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK--LGQYE 544 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~ 544 (713)
+..+++++...|+.... . .+|.++...|++++|+..|+++++..|++..+...++..+.. .|+.+
T Consensus 269 ~~~l~~~~~~~p~~~~~-~------------~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 269 LEFLRRALEEYPGADLL-L------------ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHHHHHHHHhCCCchHH-H------------HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch
Confidence 99999999999987544 3 589999999999999999999999999887665445444322 55888
Q ss_pred HHHHHHHHHHH
Q 005125 545 KAVEDCTAALI 555 (713)
Q Consensus 545 ~A~~~~~~al~ 555 (713)
+|+..+++.++
T Consensus 336 ~a~~~~~~~~~ 346 (389)
T PRK11788 336 ESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHH
Confidence 88888887664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=212.79 Aligned_cols=368 Identities=17% Similarity=0.139 Sum_probs=274.6
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC-----CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS-----GEFPQCISS---LNKLDPEELKFMGNEAYNKARFED 277 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~-----~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~ 277 (713)
.+.|+..|+++++++|. .+.+.. .||.+..... ..+...+.. .++.+|.++..++..++..|+|..
T Consensus 215 ~~~a~~a~~ralqLdp~--~v~alv----~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPT--CVSALV----ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred hhhHHHHHHHHHhcChh--hHHHHH----HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHH
Confidence 45899999999999973 334222 2444444433 337777666 778888888888888888888888
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 278 ALALYDRAIAINS---SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-HRAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 278 A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
+..++..++...- --++.++.+|.+|..+|+|++|..+|.++++.++++ .-.++.+|..|...|+++.|..+|++.
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 8888777776542 234567778888888888888888888888877777 667777888888888888888888887
Q ss_pred hhhhccccHHHHHHH--------------------------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHc----
Q 005125 354 SSLANQKDIAKAEAL--------------------------------HKHLTKCNEARELKRWNDLLKETQNVISF---- 397 (713)
Q Consensus 354 l~~~~p~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 397 (713)
+. ..|++......+ .+++.++..+....-|. ++..|..|+..
T Consensus 369 ~k-~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 369 LK-QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESK 446 (1018)
T ss_pred HH-hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHc
Confidence 77 777765432211 23344444444444444 48888887743
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
....++++++++|..++.+|++.+|...|..|+.......+.-.+........|++|.++..+++++.|.+.|...+..+
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 22255799999999999999999999999999876221111001111235578999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
|...+++. .+|......++..+|...++.++..+..++.++..+|.+|+...++..|.+-|+..++.-
T Consensus 527 p~YId~yl------------Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 527 PGYIDAYL------------RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred chhHHHHH------------HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 99999887 588788889999999999999999999999999999999999999999999777777643
Q ss_pred CCChHHHH--------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 558 PSYSKARL--------------------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 558 p~~~~a~~--------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
....++|. ++|++.|.++|+.+|.|.-+..++.-+.
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVL 656 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhh
Confidence 33322221 8999999999999999988877765443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=193.11 Aligned_cols=288 Identities=16% Similarity=0.098 Sum_probs=248.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
-|...-.-...|.+.+.+.|+++|+..|+...+.+|-..+-+-....+++-..+-.+-.-..+.+..++.-.++....+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 56667777777888888888888888888888888877776666777777666666666666777777877788888999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
+.|...++.++|+.+|++|++ ++|.. +.+|...|..+.++.+-..|+..|++|++++|.+. .+|+.+|++|.
T Consensus 338 NYYSlr~eHEKAv~YFkRALk-LNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-RAWYGLGQaYe 409 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALK-LNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-RAWYGLGQAYE 409 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHh-cCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-HHHhhhhHHHH
Confidence 999999999999999999999 99987 47888899999999999999999999999999997 89999999999
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 494 (713)
-++.+.=|+-+|++|....|. +..+|..+|.||.++++.++|+.+|.+|+.....+..++.
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn----------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~--------- 470 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN----------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV--------- 470 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC----------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH---------
Confidence 999999999999999999995 5679999999999999999999999999999888777776
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 005125 495 SARLRGNLLFKASKYKEACYAYSEGLE-------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEA 567 (713)
Q Consensus 495 ~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 567 (713)
.+|.++.+.+++++|..+|++.++ ..|+...+...||.-+.+.+++++|..++.+++.-++.- ++
T Consensus 471 ---~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~-----ee 542 (559)
T KOG1155|consen 471 ---RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC-----EE 542 (559)
T ss_pred ---HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH-----HH
Confidence 699999999999999999999998 456567777789999999999999999999988764432 55
Q ss_pred HHHHHHHHHH
Q 005125 568 AIQDYEMLIR 577 (713)
Q Consensus 568 A~~~~~~al~ 577 (713)
|...++++..
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 6555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-21 Score=185.66 Aligned_cols=314 Identities=15% Similarity=0.089 Sum_probs=248.2
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-----------------------------HHHHHHHHc
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS-----------------------------NKSAALIGL 306 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------------------------~la~~~~~~ 306 (713)
..|+..++..|.++...|....|+..|..++...|.+-.+|. .++.++..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 345666777788888888888888888877777665544443 345556666
Q ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHH-------------
Q 005125 307 GRQIEALVECKEAIRI-DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL------------- 372 (713)
Q Consensus 307 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~------------- 372 (713)
.+.++++.-++..+.. -|.+...-...|.++..+.++++|+..|+...+ -+|-.....+.+...+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-nDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-NDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7788888888888887 788888888999999999999999999999999 7876543322211110
Q ss_pred ---------------HHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH
Q 005125 373 ---------------TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 373 ---------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
-.+.-+.-.++.++|+.+|+++++++|... .+|.++|.-|..+.+...|+..|++|++++|.+.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy 398 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY 398 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence 113334456788999999999999999886 8899999999999999999999999999999765
Q ss_pred HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 438 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
. +|+.+|+.|.-++...=|+-+|++|++..|++...|. .+|.+|.+.++.++|+++|.
T Consensus 399 R----------AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~------------aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 399 R----------AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV------------ALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred H----------HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH------------HHHHHHHHhccHHHHHHHHH
Confidence 5 6677899999999999999999999999999999988 69999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHH------------HHHHHHHHHHHHh
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV-------MPSYSKARL------------EAAIQDYEMLIRE 578 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~------------~~A~~~~~~al~~ 578 (713)
+++.....+..++..||.+|.++++..+|..+|++.++. +|+-..+.. ++|-.+..+++.-
T Consensus 457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999998888899999999999999999999999999883 343333332 6777777777777
Q ss_pred CCCCHHHHHHHHHHH
Q 005125 579 IPGNEEVGRALFEAQ 593 (713)
Q Consensus 579 ~p~~~~~~~~l~~~~ 593 (713)
++.-.++...+.+++
T Consensus 537 ~~e~eeak~LlReir 551 (559)
T KOG1155|consen 537 ETECEEAKALLREIR 551 (559)
T ss_pred CchHHHHHHHHHHHH
Confidence 666666665555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=188.46 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=251.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
++++.+...+..++..++|.+-.+.++..++.+|-+..++-..-.++..+|+..+-...-.+.++..|+.+-.|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 56788999999999999999999999999999998877665555599999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
|...|++.+|..+|.++.. ++|... .+|+..|..+...+..++|+..|..|-++-|... .-...+|.-|...
T Consensus 322 Yl~i~k~seARry~SKat~-lD~~fg------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t 393 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATT-LDPTFG------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRT 393 (611)
T ss_pred HHHhcCcHHHHHHHHHHhh-cCcccc------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHh
Confidence 9999999999999999999 999985 6788889999999999999999999999988775 4455669999999
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID----PNNKEVIKGVKMAKA 492 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~ 492 (713)
+.++-|..+|.+|+.+.|. ++.++..+|.+.+..+.|.+|..+|+.++..- +... .|.
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~----------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~------- 455 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS----------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWE------- 455 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC----------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chh-------
Confidence 9999999999999999995 67789999999999999999999999999432 2221 222
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
..+.++|.++.+++.+++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|+++|.++|.++|++..
T Consensus 456 -p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 456 -PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred -HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 223489999999999999999999999999999999999999999999999999999999999999844
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=176.99 Aligned_cols=314 Identities=11% Similarity=0.106 Sum_probs=256.7
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 310 (713)
+|..+...+ ..|...|.. .+|++-.+++..|.+|+..|+-.-|+.-+.++|++.|+...+...+|.+++.+|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444444444 234444444 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Q 005125 311 EALVECKEAIRIDPCY---HRAH------------HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 375 (713)
+|+..|+++|..+|.+ .++. ......+...|++..|++...+.++ +.|-+. ..+..++
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-i~~Wda------~l~~~Ra 196 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-IQPWDA------SLRQARA 196 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-cCcchh------HHHHHHH
Confidence 9999999999999955 2222 2333455667999999999999999 888663 5566788
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh--hcccCcHHHHHHH
Q 005125 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL--FGLAGGAYLLIVR 453 (713)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~l 453 (713)
.++...|+...||..++.+-++..++. +.++.++.+++..|+.+.++...+++++++|++..-+ +.......-...-
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnT-e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNT-EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccch-HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988886 8888999999999999999999999999999864311 1000011111222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
+.-....++|.++++..++.++.+|..+..... ....+..++...+++.+|+..+.++++.+|+++.+++.+
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--------~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--------GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--------eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 445567889999999999999999986554431 112467888899999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|.+|+....|+.|+..|++|.+.++++..+.-
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999987765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-19 Score=200.18 Aligned_cols=358 Identities=14% Similarity=0.036 Sum_probs=266.4
Q ss_pred HHHHHHHhhhhcCCCcc-ccccccccccchhhhhcCCC--CchhhhHhh-cCCCCHHHHHHH--HHHHHHhcCHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQR-YGESRLGRNGVMGNIVKQPS--GEFPQCISS-LNKLDPEELKFM--GNEAYNKARFEDALAL 281 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~-~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~-~~~~~~~~~~~l--g~~~~~~g~~~~A~~~ 281 (713)
.|+..|+++++.+|... ... -+..++...| ++|...+++ ..|.+...+..+ |..+...|+|++|+++
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~-------dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVD-------DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HHHHHHHHHHhhCccchhhHH-------HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998531 111 1222222334 678888888 665555555555 7799999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|+..|+++++ .+|++
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~-~~P~n 202 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR-LAPTS 202 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH-hCCCC
Confidence 999999999999999999999999999999999999999999986554 5667777778888789999999999 99987
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 005125 362 IAKAEALHKHLT-------------------------------------------------------------------- 373 (713)
Q Consensus 362 ~~~~~~~~~~~~-------------------------------------------------------------------- 373 (713)
......+...+.
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 643221111100
Q ss_pred ---------------HHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 374 ---------------KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 374 ---------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
+...+...+++.+++..|+..-.....-++.+....|..|+..++.++|+.+|++++.-.++.
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~-- 360 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT-- 360 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--
Confidence 011111234444444444444333322233556667888888888888888888887655321
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN------------NKEVIKGVKMAKAMASARLRGNLLFKA 506 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~lg~~~~~~ 506 (713)
............|...|...+++++|..++++..+..|- |++ |. .....++.++...
T Consensus 361 --~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d-~~--------~~~~l~a~~~~~~ 429 (822)
T PRK14574 361 --FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD-WI--------EGQTLLVQSLVAL 429 (822)
T ss_pred --cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc-HH--------HHHHHHHHHHHHc
Confidence 000112333466788899999999999999999885551 111 11 1223588889999
Q ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHH
Q 005125 507 SKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEM 574 (713)
Q Consensus 507 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~ 574 (713)
|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.++.++|++..+.+ .+|....++
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777 667777777
Q ss_pred HHHhCCCCHHHHH
Q 005125 575 LIREIPGNEEVGR 587 (713)
Q Consensus 575 al~~~p~~~~~~~ 587 (713)
+++..|+++.+..
T Consensus 510 l~~~~Pe~~~~~~ 522 (822)
T PRK14574 510 VISRSPEDIPSQE 522 (822)
T ss_pred HHhhCCCchhHHH
Confidence 7999999997664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=191.72 Aligned_cols=308 Identities=18% Similarity=0.174 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...++..|+.++..|++++|..++.++|+.+|.++.+|+.||.+|.++|+.+++...+-.|..++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP----QVYALQAEALL 414 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~la~~~~ 414 (713)
.+|.+..|.-+|.+|++ .+|.+. ...+.++..+.++|+...|...|.+++...|.... ..-...+..+.
T Consensus 219 ~~~~i~qA~~cy~rAI~-~~p~n~------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQ-ANPSNW------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred hcccHHHHHHHHHHHHh-cCCcch------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999883 66788888899999999999999999999984321 22233466777
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH----------
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ--IDPNNKE---------- 482 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~---------- 482 (713)
..++-+.|++.++.++....+. .....+..++.++++...++.|......... ..+++.+
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~--------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDE--------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HhhHHHHHHHHHHHHHhhcccc--------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 7788899999999888732211 1233456678888888888888877655443 1111110
Q ss_pred ----------------H-HHHHHH-----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 483 ----------------V-IKGVKM-----------------------AKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 483 ----------------~-~~~~~~-----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
+ +..+.. ......++.++.++...|+|.+|+.+|..++..
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 0 000000 012455778999999999999999999999988
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCC
Q 005125 523 EAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 523 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~ 581 (713)
.+. +..+|+.+|.||..+|.+++|+++|++++.+.|++.++++ ++|++.++....-++.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 764 4789999999999999999999999999999999999888 7888888776644433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-22 Score=199.11 Aligned_cols=264 Identities=16% Similarity=0.190 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
.+.+|..++..|++++|++.+.+.+.. .|++...|..+|.+...++++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 347799999999999999999776554 488999999999999999999999999999999999999999999888 79
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHccC
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA-DSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~g~ 418 (713)
.+++++|+..++++.+ ..++. ..+......+...++++++...++++....+ ...+.+|..+|.++...|+
T Consensus 90 ~~~~~~A~~~~~~~~~-~~~~~-------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYE-RDGDP-------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccccccccccccccc-ccccc-------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998877 55432 2334455667788999999999998776541 2335788889999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+++|+.+|+++++..|+ +..++..++.++...|+++++.+.+.......|.++..+. .
T Consensus 162 ~~~A~~~~~~al~~~P~----------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~ 219 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD----------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD------------A 219 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH------------H
T ss_pred HHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH------------H
Confidence 99999999999999996 4557888899999999999999999888888888887776 5
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|...++++++.
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999988763
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=178.30 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=243.9
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCC--chhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSG--EFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~--~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
+.||.+|..++.++|... .++ .+ -..+|..+++ +|..--.+ +.|.-+..|..+|..++..|+|++|+..
T Consensus 19 ~~ai~~~t~ai~l~p~nh---vly-Sn--rsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNH---VLY-SN--RSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred HHHHHHHHHHHccCCCcc---chh-cc--hHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 499999999999998522 111 11 2344444552 23332222 8999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC---------------------HHHHHHHHHHHHH---h---------------
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGR---------------------QIEALVECKEAIR---I--------------- 322 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~---~--------------- 322 (713)
|.+.|+.+|++..++.+++.++..... +-..-..|...++ .
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m 172 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM 172 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence 999999999999999998888732200 0000011111111 0
Q ss_pred --------------------------CC------------C---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 323 --------------------------DP------------C---------YHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 323 --------------------------~p------------~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.| + -......+|.......+++.|+++|..++.
T Consensus 173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e 252 (539)
T KOG0548|consen 173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE 252 (539)
T ss_pred HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 0 012456788888888999999999999999
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh-
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL- 434 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 434 (713)
++.+-.........++.++....-.+.-++|++.-........ .....+..+|..|...++++.|+.+|++++....
T Consensus 253 -l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k-lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 253 -LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK-LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred -HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH-HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 8733333333444555555555555555555544332211100 0234445567778888888888888888764322
Q ss_pred -hhHHh---------------hhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 435 -EYYTK---------------LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 435 -~~~~~---------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+.... ++++ ..+.-....|..++..|+|..|+.+|.+||..+|+++..+. |
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~p-e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs------------N 397 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINP-EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS------------N 397 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH------------H
Confidence 11111 1111 12344556699999999999999999999999999999988 8
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHh
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIRE 578 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~ 578 (713)
+|.+|.++|.+..|+...+.+++++|+....|...|.++..+.+|++|.+.|+++++++|++. +++..|.+++..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~-----e~~~~~~rc~~a 472 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA-----EAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH-----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999884 455555555553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=172.26 Aligned_cols=235 Identities=15% Similarity=0.055 Sum_probs=195.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
..+|.+|++.|-+.+|...++.+++..|. ++.+..++.+|.+..+...|+..|.+.++..|.+...+..+|.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 46777777777777777777777776654 56666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHH
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEA 422 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 422 (713)
+++|+++|+.+++ .+|.+. ++...+|.-|+.-++.+-|
T Consensus 306 ~~~a~~lYk~vlk-~~~~nv-----------------------------------------EaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 306 QEDALQLYKLVLK-LHPINV-----------------------------------------EAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHHHHHHHHHHh-cCCccc-----------------------------------------eeeeeeeeccccCCChHHH
Confidence 7777777777777 666663 5566678889999999999
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN---KEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~l 499 (713)
+.+|++.+++.- .+++.++++|.|.+..++++-++..|++|+....+. .++|+ |+
T Consensus 344 lryYRRiLqmG~----------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY------------Nl 401 (478)
T KOG1129|consen 344 LRYYRRILQMGA----------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY------------NL 401 (478)
T ss_pred HHHHHHHHHhcC----------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh------------cc
Confidence 999999998765 467799999999999999999999999999865433 34554 89
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
|.+....|++.-|..+|+-++..++++.+++.|||.+-.+.|+.++|..++..|-.+.|+-.+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 999999999999999999999999999999999999999999999999999999999997543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=197.73 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=113.6
Q ss_pred HHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHH
Q 005125 261 ELKFMGNEAYN---KARFEDALALYDRAIAINSSKATYRSNKSAALIGL---------GRQIEALVECKEAIRIDPCYHR 328 (713)
Q Consensus 261 ~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 328 (713)
.++..|...+. .+++++|+.+|+++++++|+++.++..+|.+|..+ +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 45566654443 35678999999999999999999999999988744 3489999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
++..+|.++...|++++|+.+|+++++ ++|++. ..++.++..+...|++++|+..++++++++|.+. .++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P~~~------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~ 411 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL-LSPISA------DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AAGIT 411 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hhHHH
Confidence 999999999999999999999999999 999884 2333344444444444444444444444444432 22222
Q ss_pred HHHHHHHccCHHHHHHHhhccc
Q 005125 409 QAEALLRLQRHQEAHDSYNKSP 430 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al 430 (713)
++.++...|++++|+..+++++
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHH
Confidence 2333333444444444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=187.53 Aligned_cols=243 Identities=17% Similarity=0.162 Sum_probs=199.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
=+..|..+++.|+..+|+-+|+.|+..+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
.-.+|+.++.+-+. ..|...... .+.. .+++..- ..+.+ ...+..+
T Consensus 368 ~q~~Al~~L~~Wi~-~~p~y~~l~--------~a~~---~~~~~~~---------~s~~~-~~~l~~i------------ 413 (579)
T KOG1125|consen 368 LQNQALKMLDKWIR-NKPKYVHLV--------SAGE---NEDFENT---------KSFLD-SSHLAHI------------ 413 (579)
T ss_pred hHHHHHHHHHHHHH-hCccchhcc--------ccCc---cccccCC---------cCCCC-HHHHHHH------------
Confidence 99999999999988 666542100 0000 0000000 00001 1112222
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~ 501 (713)
.+.|-.+....|. ..++++...||.+|...|+|++|+.+|+.||...|++...|+ .+|.
T Consensus 414 -~~~fLeaa~~~~~--------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN------------RLGA 472 (579)
T KOG1125|consen 414 -QELFLEAARQLPT--------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN------------RLGA 472 (579)
T ss_pred -HHHHHHHHHhCCC--------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH------------HhhH
Confidence 2223333222221 146779999999999999999999999999999999999998 6999
Q ss_pred HHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 502 LLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 502 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+..-.+.++|+..|++|+++.|....+++|||.+++.+|.|++|+.+|-.||.+.+.
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999776
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=183.99 Aligned_cols=300 Identities=14% Similarity=0.082 Sum_probs=242.0
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++|..++.. .+|.++.+|+.+|.+|.++|+.++++..+-.|-.++|.+.+.|..++....++|++.+|.-+|.+||+
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 456666655 77888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.+|.+....+..+.+|.++|++..|...|.+++. +.|.. +...........+..+...++-+.|++.++.++....+.
T Consensus 236 ~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 236 ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999 87722 111222233444666667777799999999998832221
Q ss_pred -hHHHHHHHHHHHHHccCHHHHHHHhhcccc--CChhhHH----------------------------------------
Q 005125 402 -APQVYALQAEALLRLQRHQEAHDSYNKSPK--FCLEYYT---------------------------------------- 438 (713)
Q Consensus 402 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~---------------------------------------- 438 (713)
....+..++.+++...+++.|.......-. ..++...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 124566778899999999988877654322 0000000
Q ss_pred ------------hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 439 ------------KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK-EVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 439 ------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
........+..++.++.+|...|++.+|+.+|..+....+... ..|. .+|.+|..
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~------------~~a~c~~~ 461 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY------------KLARCYME 461 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH------------HHHHHHHH
Confidence 0000123477899999999999999999999999888766543 3444 79999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
+|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++....-++
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999999999999998874443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-18 Score=190.45 Aligned_cols=351 Identities=14% Similarity=0.032 Sum_probs=268.9
Q ss_pred ccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 233 NGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG 307 (713)
Q Consensus 233 ~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 307 (713)
....+.+..+.| +.|...+.+ .+|.++.....+..++...|++++|+.++++++.-.|.....+..+|.++...|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 345677788888 557887777 778886445588888889999999999999999334444555555588999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDL 387 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 387 (713)
++++|++.|+++++.+|+++.++..++.+|...++.++|++.++++.. .+|.+. ....++.++...++..+|
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-~dp~~~-------~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE-RDPTVQ-------NYMTLSYLNRATDRNYDA 188 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-cCcchH-------HHHHHHHHHHhcchHHHH
Confidence 999999999999999999999999999999999999999999999999 898852 224445555557777779
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc--------------------------------------
Q 005125 388 LKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS-------------------------------------- 429 (713)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------------------------------- 429 (713)
+..++++++.+|++. .++..+..++...|-...|++...+-
T Consensus 189 L~~~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999999986 66666666666666555444444432
Q ss_pred ----------cc---CChhhHHh---------------------------hh--cccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 430 ----------PK---FCLEYYTK---------------------------LF--GLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 430 ----------l~---~~~~~~~~---------------------------~~--~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
+. ..|..... +. +...-.++....|..|+..++.++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 21 11110000 00 00112455666778888888888888
Q ss_pred HHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---------------CCHH
Q 005125 468 KTAQDAAQIDPN----NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA---------------YNSV 528 (713)
Q Consensus 468 ~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~ 528 (713)
.+|++++.-.|. ..... ....|..++...++|++|..++++..+..| +...
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~----------~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLL----------DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HHHHHHhhccccccCCCcchH----------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 888888775532 11111 011478889999999999999999987444 3367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 596 (713)
+...++.++...|++.+|++.+++.+...|.+...+. .+|.+.++.++.++|++..+...+..+...+
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 7888999999999999999999999999999998877 8999999999999999999988888888888
Q ss_pred HHhcCc
Q 005125 597 KKQRGE 602 (713)
Q Consensus 597 ~~~~~~ 602 (713)
.+|+..
T Consensus 498 ~e~~~A 503 (822)
T PRK14574 498 QEWHQM 503 (822)
T ss_pred hhHHHH
Confidence 777643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=178.00 Aligned_cols=225 Identities=15% Similarity=0.039 Sum_probs=140.2
Q ss_pred cCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 273 ARFEDALALYDRAIAI---NSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 273 g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
+..+.++..+.++|.. +|. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566677777777753 222 356677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhc
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (713)
.|+++++ ++|++. .++.++|.++...|++++|+..|++
T Consensus 120 ~~~~Al~-l~P~~~-----------------------------------------~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 120 AFDSVLE-LDPTYN-----------------------------------------YAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777 776652 5556666666666666666666666
Q ss_pred cccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 005125 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK 508 (713)
Q Consensus 429 al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 508 (713)
+++..|++... ..| ..++...+++++|+..|.+++...+.. .|. .+.+....|+
T Consensus 158 al~~~P~~~~~--------~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-------------~~~~~~~lg~ 211 (296)
T PRK11189 158 FYQDDPNDPYR--------ALW---LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-------------WNIVEFYLGK 211 (296)
T ss_pred HHHhCCCCHHH--------HHH---HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-------------HHHHHHHccC
Confidence 66666643210 011 122334567777777776665443222 121 2233333444
Q ss_pred HHH--HHHHH----HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHH
Q 005125 509 YKE--ACYAY----SEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP-SYSKARL 565 (713)
Q Consensus 509 ~~~--A~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~ 565 (713)
+.+ ++..+ +..+++.|..+++|+++|.++.++|++++|+.+|++|++.+| ++.+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 212 ISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 322 22222 233345566677888888888888888888888888888876 4444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-17 Score=176.96 Aligned_cols=297 Identities=11% Similarity=-0.031 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-RAHHRLAMLY 337 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 337 (713)
.......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 334677888999999999999999999999998888888899999999999999999999999999875 5666679999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH---HHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA---LQAEALL 414 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~la~~~~ 414 (713)
...|+++.|+..++++++ ..|++. ..+...+..+...|+|++|+..+.+.++....+...... .....+.
T Consensus 164 l~~~~~~~Al~~l~~l~~-~~P~~~------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLE-MAPRHK------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999996 556677888999999999999999999886554432211 2222224
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 494 (713)
..+..+++.+.+.++....|.... .++.++..++..+...|++++|++.++++++..|++.......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~------~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~------- 303 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRR------HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL------- 303 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHh------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH-------
Confidence 445555566677777766664322 3677899999999999999999999999999999987532100
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChHHHH-----
Q 005125 495 SARLRGNLLFKASKYKEACYAYSEGLEHEAYNS--VLLCNRAACRSKLGQYEKAVEDCT--AALIVMPSYSKARL----- 565 (713)
Q Consensus 495 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~----- 565 (713)
-........++.+++++.++++++.+|+++ ..+..+|.++.+.|++++|.++|+ .+++..|+......
T Consensus 304 ---l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 304 ---CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred ---HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 133444556888999999999999999999 889999999999999999999999 68888898765333
Q ss_pred ------HHHHHHHHHHHHh
Q 005125 566 ------EAAIQDYEMLIRE 578 (713)
Q Consensus 566 ------~~A~~~~~~al~~ 578 (713)
++|.+.|++++..
T Consensus 381 ~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=155.55 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
.+...+|..|+..|++..|...+++||+.||++..+|..+|.+|...|+.+.|.+.|++|+.++|++.+++.+.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
+|++++|...|++|+. +|...
T Consensus 116 qg~~~eA~q~F~~Al~--~P~Y~--------------------------------------------------------- 136 (250)
T COG3063 116 QGRPEEAMQQFERALA--DPAYG--------------------------------------------------------- 136 (250)
T ss_pred CCChHHHHHHHHHHHh--CCCCC---------------------------------------------------------
Confidence 9999999999999987 44331
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
..+..+-++|.|..+.|+++.|.++|+++++++|+++.... .+
T Consensus 137 -------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l------------~~ 179 (250)
T COG3063 137 -------------------------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL------------EL 179 (250)
T ss_pred -------------------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH------------HH
Confidence 13346677788888888889999999999999998888776 68
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+...+..|+|..|..++++.....+-.++.+.....+-..+|+-+.|-.+=.+.....|....
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 888889999999998888888877777888877778888888888888888887777777643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-18 Score=179.18 Aligned_cols=296 Identities=13% Similarity=0.029 Sum_probs=234.7
Q ss_pred hhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHH
Q 005125 237 GNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-TYRSNKSAALIGLGRQI 310 (713)
Q Consensus 237 g~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~ 310 (713)
|.+....| +.|...+.+ ..|.....+...|..+..+|++++|..+|.++.+..|+.. .+....+.++...|+++
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 33344444 346666655 5666777788889999999999999999999999999875 46666799999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 005125 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE 390 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 390 (713)
+|+..++++++..|+++.++..++.+|...|++++|++.+.+..+ ....+......+.. .........+..+++...
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~--~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQ--KAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHH--HHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999999999999999999987 54333322211111 111111233444556677
Q ss_pred HHHHHHcCCCC---hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 391 TQNVISFGADS---APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 391 ~~~al~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
+..+....|.. .+.++..++..+...|++++|+..++++++..|++.... ............++.+.++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--------~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--------LPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--------hHHHHHhhhcCCCChHHHH
Confidence 88888877742 458999999999999999999999999999988753210 1122344445568899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH--HHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 468 KTAQDAAQIDPNNK--EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS--EGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 468 ~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
+.++++++..|+++ .... .+|.++++.|+|++|.++|+ .+++..|+... +..+|.++.++|+.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~------------sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~ 386 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINR------------ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHHHHhCCCChhHHHHH------------HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCH
Confidence 99999999999999 5555 69999999999999999999 68888886655 66999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005125 544 EKAVEDCTAALIV 556 (713)
Q Consensus 544 ~~A~~~~~~al~~ 556 (713)
++|.+++++++..
T Consensus 387 ~~A~~~~~~~l~~ 399 (409)
T TIGR00540 387 AEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-18 Score=164.08 Aligned_cols=314 Identities=13% Similarity=0.050 Sum_probs=254.6
Q ss_pred cCCCCHHHHH-HHHHHHHHhcCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELK-FMGNEAYNKARF--EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~-~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
..|..++.+. ..+.+....++. .-+..++-.-....|++...+..+|.+++..|++.+|+..|+++.-++|....+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 4455554333 233444444444 4445555666667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
-..|.++...|+++.--......+. .+... ...|+-.+.......++..|+...+++|+.+|.+. ..+...|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~-~~~~t------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-~alilKG 341 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFA-KVKYT------ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-EALILKG 341 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHh-hhhcc------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-hHHHhcc
Confidence 9999999999999887666666655 44332 23455666777788899999999999999999987 7888889
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++..+++.++|+-.|+.|..+.|- ..+.|..+-.+|...|++.+|....+.++..-|.++..+.+
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~----------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL---- 407 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPY----------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL---- 407 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchh----------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh----
Confidence 9999999999999999999999885 44577788899999999999999999999999999888773
Q ss_pred HHHHHHHHHH-HH-HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---
Q 005125 491 KAMASARLRG-NL-LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL--- 565 (713)
Q Consensus 491 ~~~~~~~~lg-~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--- 565 (713)
+| .+ +..-.--++|.+++++++.+.|....+-..+|.++...|.+++++..+++++...|+...-..
T Consensus 408 --------~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 408 --------FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred --------hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 44 33 344445689999999999999999999999999999999999999999999999998753322
Q ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005125 566 --------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLK 597 (713)
Q Consensus 566 --------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 597 (713)
++|+..|..||+++|++.....++.....+..
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 89999999999999999999999877654443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=176.21 Aligned_cols=258 Identities=14% Similarity=0.077 Sum_probs=221.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|-++..+-..--+++..|+..+-..+-.+.++.+|+.+..|+..|.-|...|++.+|..+|.++..++|....+|...
T Consensus 273 ~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f 352 (611)
T KOG1173|consen 273 KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF 352 (611)
T ss_pred hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH
Confidence 45666655554444889999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|..|...|+.++|+.+|..|-+ +-|... ...+-.+..+..++.+.-|.+.|.+++.+.|.++ .++..+|.+.
T Consensus 353 ghsfa~e~EhdQAmaaY~tAar-l~~G~h------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-lv~~Elgvva 424 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAAR-LMPGCH------LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-LVLHELGVVA 424 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHH-hccCCc------chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-hhhhhhhhee
Confidence 9999999999999999999999 766652 4567778888999999999999999999999985 8888999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
+..+.|.+|+.+|+.++...+....... .-...+.++|.+|.+++++++|+.+|+++|.+.|.+...+.
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~---~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a-------- 493 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKI---FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA-------- 493 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhcccccc---chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH--------
Confidence 9999999999999999843332211100 11336899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
.+|.++..+|+++.|++.|.+++.+.|++..+--.|+
T Consensus 494 ----sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 494 ----SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred ----HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 6999999999999999999999999999866555555
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=175.77 Aligned_cols=216 Identities=11% Similarity=-0.015 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g 417 (713)
...|++++|+..|+++++ .+|++... .+| ..++...+
T Consensus 143 ~~~g~~~eA~~~~~~al~-~~P~~~~~---------------------------------------~~~---~~l~~~~~ 179 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ-DDPNDPYR---------------------------------------ALW---LYLAESKL 179 (296)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCCCHHH---------------------------------------HHH---HHHHHccC
Confidence 999999999999999999 99987410 011 12233456
Q ss_pred CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Q 005125 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA-------AQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~~~~~ 490 (713)
++++|+..|.+++...+.. .|. .+.++...|++.++ ..++.+ .++.|...++|.
T Consensus 180 ~~~~A~~~l~~~~~~~~~~------------~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~----- 240 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKE------------QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF----- 240 (296)
T ss_pred CHHHHHHHHHHHHhhCCcc------------ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH-----
Confidence 7777777776654322110 111 24555556665443 233333 344555556665
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-YNSVLLCNRAACRSKLGQ 542 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 542 (713)
++|.++...|++++|+.+|+++++.+| +..+..+.+..+....++
T Consensus 241 -------~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 241 -------YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred -------HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999997 666666666555544433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=190.34 Aligned_cols=245 Identities=11% Similarity=-0.000 Sum_probs=188.7
Q ss_pred chhhhHhh---cCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 246 EFPQCISS---LNKLDPEELKFMGNEAYNK---------ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313 (713)
Q Consensus 246 ~a~~~~~~---~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 313 (713)
+|..++++ ++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 45555555 5666777788888776643 44899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005125 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQN 393 (713)
Q Consensus 314 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 393 (713)
..|+++++++|+++.+++.+|.++...|++++|+.+|+++++ ++|.+.. .....+..+...|++++|+..+++
T Consensus 359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-l~P~~~~------~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK-LDPTRAA------AGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCChh------hHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999752 223344456668999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 394 VISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA 473 (713)
Q Consensus 394 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 473 (713)
++...|.+.+..+..+|.+|...|++++|...+.++....|. ...++..++..|...|+ +|...+++.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~--~a~~~l~~l 499 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT----------GLIAVNLLYAEYCQNSE--RALPTIREF 499 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch----------hHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 998875444678888899999999999999999887766664 23356667777777774 676666665
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 474 l~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
++.......... ....++.-.|+-+.|... +++.+.
T Consensus 500 l~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 500 LESEQRIDNNPG------------LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhHhhcCch------------HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 543222111111 245555666666666665 555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=167.19 Aligned_cols=280 Identities=14% Similarity=0.073 Sum_probs=254.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.-|.+...+..+|.+++..|++++|+..|+++.-++|......-..|..+...|+++.-...-...+.++.....-|+--
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
+.+++..++++.|+.+-+++++ .+|.+ ...++.++..+..+++.++|+-.|+.+..+.|-.. +.|..+-.+|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~-~~~r~------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL-~~Y~GL~hsY 378 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCID-SEPRN------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL-EIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhc-cCccc------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhH-HHHHHHHHHH
Confidence 9999999999999999999999 99988 47889999999999999999999999999998875 8899999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA-QVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
+..|++.||...-+.++...|. ++..+..+| .++.. ----++|.+++++++++.|....+..
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~----------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~------ 442 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQN----------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN------ 442 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhc----------chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH------
Confidence 9999999999999988877664 455666665 44433 23358999999999999999988877
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.++.++...|.+.+++..+++++...| +...+..||.++...+.+.+|..+|..|+.++|++..+.
T Consensus 443 ------~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 443 ------LIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred ------HHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 589999999999999999999999988 567899999999999999999999999999999985543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-18 Score=165.04 Aligned_cols=205 Identities=17% Similarity=0.125 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g 417 (713)
...|++++|+..|++++. ..+..
T Consensus 110 ~~~g~~~~A~~~~~~~~~-~~~~~-------------------------------------------------------- 132 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIE-DPLYP-------------------------------------------------------- 132 (234)
T ss_pred HHcccHHHHHHHHHHHHh-ccccc--------------------------------------------------------
Confidence 888888888888888766 21100
Q ss_pred CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005125 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASAR 497 (713)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 497 (713)
.....+..+|.++...|++++|...|++++..+|++...+.
T Consensus 133 ---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------ 173 (234)
T TIGR02521 133 ---------------------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL------------ 173 (234)
T ss_pred ---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH------------
Confidence 11224455667777777777777777777777777666555
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
.+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 4677777777777777777777777666677777777777777777777777666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-17 Score=171.20 Aligned_cols=284 Identities=13% Similarity=0.102 Sum_probs=218.0
Q ss_pred chhhhHhh--cCCCCHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 246 EFPQCISS--LNKLDPEELKFM-GNEAYNKARFEDALALYDRAIAINSSKATYR-SNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 246 ~a~~~~~~--~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
.|.....+ ...+++..++.+ +......|+++.|..+|.++.+.+|+...+. ...+.++...|++++|+..++++++
T Consensus 102 ~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~ 181 (398)
T PRK10747 102 QVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE 181 (398)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555 333445555555 5555999999999999999999999985443 3458999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH--HHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH--KHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
.+|+++.++..++.+|...|++++|++.+.+..+ ..+.+......+. .+...........+.+...+.++..-...|
T Consensus 182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 9999999999999999999999999999998887 5554433222211 222222222222333333333333333344
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
++ +.+...++..+...|+.++|...++++++..++ .......+. ...++++++++.+++.++.+|+
T Consensus 261 ~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-----------~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 261 HQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-----------ERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHhh--ccCCChHHHHHHHHHHHhhCCC
Confidence 45 478888999999999999999999999985443 222222333 2459999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
++..+. .+|.++...++|++|.++|+++++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 327 ~~~l~l------------~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWS------------TLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999887 59999999999999999999999999965 456689999999999999999999998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=160.92 Aligned_cols=191 Identities=18% Similarity=0.126 Sum_probs=119.5
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHH
Q 005125 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~ 455 (713)
......|++++|.+.|+.++..+.... ++++++|..+..+|++++|+++|-+.-.+-. .++.+++.++.
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~il~----------nn~evl~qian 566 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL----------NNAEVLVQIAN 566 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH----------hhHHHHHHHHH
Confidence 333445777777777777777665554 6777777777777777777777766543322 24567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
+|..+.+..+|+++|.++..+-|+++.++. .+|.+|-+.|+-.+|..++-.....-|-+.++.-.||.
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ils------------kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILS------------KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHH------------HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 777777777777777777777777777766 45556655666555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
.|....-+++|+.+|++|--+.|+-..-.+ .+|...|+..-+..|.+.+....|
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 555555555555555555555555332211 555555555555555555554444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-20 Score=183.77 Aligned_cols=259 Identities=22% Similarity=0.209 Sum_probs=114.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIR-I-DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+..|. . ....+|.+++..|++++|++.+.+.+. . .|++...|..+|.+...+++++.|+..|++++. .++....
T Consensus 4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~~~~- 79 (280)
T PF13429_consen 4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKANPQ- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-
Confidence 34455 2 334679999999999999999976654 4 488999999999999999999999999999999 7776532
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
.+...+.. ...+++++|+..++++++..++ +..+.....++...++++++...++++....+ ..
T Consensus 80 -----~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------~~ 143 (280)
T PF13429_consen 80 -----DYERLIQL-LQDGDPEEALKLAEKAYERDGD--PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------AP 143 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------
T ss_pred -----cccccccc-cccccccccccccccccccccc--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------CC
Confidence 22233333 5789999999999999887654 35666778889999999999999999764332 11
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
.++.+|..+|.++.+.|++++|+.+|+++++.+|++..++. .++.++...|+++++.+.++......|
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------------~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------------ALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------------HHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------HHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 46778999999999999999999999999999999999887 689999999999999999998888889
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHH
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIR 577 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~ 577 (713)
.++..+..+|.++..+|++++|+.+|++++..+|+++..+. ++|...++++++
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999988766 556655555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-18 Score=177.67 Aligned_cols=258 Identities=21% Similarity=0.184 Sum_probs=207.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--- 322 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 322 (713)
..|.-..+...+|..|..+|+|++|+..++++++. .|.-...+..+|.+|..++++.+|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 55666678888999999999999999999999998 5655667777999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc
Q 005125 323 -----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397 (713)
Q Consensus 323 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 397 (713)
+|..+.++.+||.+|...|++++|..++++|++ +... .+..
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-I~~~---------------------------------~~~~ 319 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-IYEK---------------------------------LLGA 319 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-HHHH---------------------------------hhcc
Confidence 455578899999999999999999999999998 3221 1112
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
.+......+..++.++..++++++|+.+|++++++..+..... ....+..+.++|.+|..+|++++|.+.|++|+.+.
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~--~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED--NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2223346777889999999999999999999887654221110 01246688999999999999999999999999874
Q ss_pred CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-------CCCCHHHHHHHHHHHHHcCCHHH
Q 005125 478 PN-----NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH-------EAYNSVLLCNRAACRSKLGQYEK 545 (713)
Q Consensus 478 p~-----~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~ 545 (713)
.. +...- ..+.++|..+.+.+++.+|...|.+++.+ .|+....|.|||.+|..+|++++
T Consensus 398 ~~~~~~~~~~~~---------~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 398 RELLGKKDYGVG---------KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HhcccCcChhhh---------HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 21 11111 12337999999999999999999998865 34556789999999999999999
Q ss_pred HHHHHHHHHHh
Q 005125 546 AVEDCTAALIV 556 (713)
Q Consensus 546 A~~~~~~al~~ 556 (713)
|+++.++++..
T Consensus 469 a~~~~~~~~~~ 479 (508)
T KOG1840|consen 469 AEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999998854
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-16 Score=161.66 Aligned_cols=308 Identities=15% Similarity=0.067 Sum_probs=278.6
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
+.-..|..-+..+...+.++-|+..|..+|+.+|.....|...+..-..-|..++-..++++++...|.....|...+..
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 33457888889999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
+...|+...|...+.++++ ..|++. ..++...........++.|...+.++....|.. .+|+.-+.+...+
T Consensus 594 ~w~agdv~~ar~il~~af~-~~pnse------eiwlaavKle~en~e~eraR~llakar~~sgTe--Rv~mKs~~~er~l 664 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFE-ANPNSE------EIWLAAVKLEFENDELERARDLLAKARSISGTE--RVWMKSANLERYL 664 (913)
T ss_pred HHhcCCcHHHHHHHHHHHH-hCCCcH------HHHHHHHHHhhccccHHHHHHHHHHHhccCCcc--hhhHHHhHHHHHh
Confidence 9999999999999999999 999874 556667777788899999999999999988775 7888888899999
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
+..++|+.+++++++..|+... +|..+|.++..+++.+.|.+.|...++..|.....|.
T Consensus 665 d~~eeA~rllEe~lk~fp~f~K----------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl----------- 723 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHK----------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL----------- 723 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHH----------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH-----------
Confidence 9999999999999999997654 7889999999999999999999999999999999998
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
.++.+-.+.|+.-.|...++++.-.+|.++..|...-..-.+.|+.+.|.....+||+-.|++...|.
T Consensus 724 -lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 -LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred -HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 48888999999999999999999999999999999999999999999999999999999999876665
Q ss_pred -------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 566 -------------------------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQ 595 (713)
Q Consensus 566 -------------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 595 (713)
++|.+.|.++++.+|++.+++-.+++-..+
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 788999999999999999888777665433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-16 Score=160.16 Aligned_cols=307 Identities=16% Similarity=0.081 Sum_probs=275.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|..-..|...+..-...|..++-..++++++...|.....|...+..++..|+...|...+.++++.+|++.+.|+.-
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa 624 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA 624 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 56777788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
-.+.....+++.|...|.++.. ..|.. ..++..+.....++..++|+..++.+++..|+.. .+|..+|+++
T Consensus 625 vKle~en~e~eraR~llakar~-~sgTe-------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-Kl~lmlGQi~ 695 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS-ISGTE-------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-KLWLMLGQIE 695 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc-cCCcc-------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-HHHHHHhHHH
Confidence 9999999999999999999988 77775 4577777788889999999999999999999995 8999999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
..+++.+.|...|...++..|. .+-+|..++.+-.+.|..-.|...++++.-.+|++...|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~----------~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl-------- 757 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPN----------SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL-------- 757 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCC----------CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH--------
Confidence 9999999999999999999995 4558899999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCC------------------------------CCHHHHHHHHHHHHHcCCH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEA------------------------------YNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------------------~~~~~~~~la~~~~~~g~~ 543 (713)
..-..-.+.|+.+.|.....+|++-.| .++.++...|.++....++
T Consensus 758 ----e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 758 ----ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 466777888999999988888887554 3466778899999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 544 EKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 544 ~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
+.|.+.|.+++..+|++.++|. +.-.+.|.+.....|.+.+.+....+
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999888776 56678889999999999887776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-17 Score=169.04 Aligned_cols=281 Identities=19% Similarity=0.181 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Q 005125 258 DPEELKFMGNEAYNK-----------ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID-PC 325 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 325 (713)
.+..++.+|.+|-.+ ....+++..++++++.+|.|+.+.++++.-|..+++.+.|+.+.+++++++ .+
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~ 511 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD 511 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc
Confidence 344556666655432 224556667777777777777777777777777777777777777777773 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH--------------HHHHHHH----------------HH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE--------------ALHKHLT----------------KC 375 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~--------------~~~~~~~----------------~~ 375 (713)
++.+|..+|.++...+++.+|+.....++. -.|+|..... .+..... .+
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~-E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g 590 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALE-EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEG 590 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 567777777777777777777777777766 4444211000 0000000 00
Q ss_pred H-------HHHHhhcHHHHHHHHHHHHHc---------------------CCCCh----HHHHHHHHHHHHHccCHHHHH
Q 005125 376 N-------EARELKRWNDLLKETQNVISF---------------------GADSA----PQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 376 ~-------~~~~~~~~~~A~~~~~~al~~---------------------~p~~~----~~~~~~la~~~~~~g~~~~A~ 423 (713)
. .....++..+|+..+..+... .|+.. ...|...+..+...+..++|.
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~ 670 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEAR 670 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 0 000011112222222222110 01100 134555666666777777777
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
-++.++-.+.|- .+..|+..|.++...|++++|.+.|..|+.++|++..... .+|.++
T Consensus 671 ~CL~Ea~~~~~l----------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~------------Ala~~l 728 (799)
T KOG4162|consen 671 SCLLEASKIDPL----------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT------------ALAELL 728 (799)
T ss_pred HHHHHHHhcchh----------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH------------HHHHHH
Confidence 777777666652 4556677777777777777777777777777777776665 567777
Q ss_pred HHcccHHHHHH--HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 504 FKASKYKEACY--AYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 504 ~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
...|+-.-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..|+++++.+|
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 77776666665 77777777777777777777777777777777777777777766554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-16 Score=166.11 Aligned_cols=287 Identities=12% Similarity=0.043 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNK-SAALIGLGRQIEALVECKEAIRIDPCYHRA-HHRLAMLY 337 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~ 337 (713)
...+..|...+..|+|++|.+...++-+..+. +..++.+ +.+....|+++.|..+++++.+.+|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34678888888999999999888876665433 4444444 666699999999999999999999998543 34559999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH----
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL---- 413 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~---- 413 (713)
...|++++|+..++++.+ ..|++. ......+..+...|+|++|+..+.+..+..+.+....-.....++
T Consensus 164 l~~g~~~~Al~~l~~~~~-~~P~~~------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 164 LARNENHAARHGVDKLLE-VAPRHP------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHCCCHHHHHHHHHHHHh-cCCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999996 455666788889999999999999998887665432221211222
Q ss_pred ---HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 414 ---LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 414 ---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
....+-+....+++......| .++.+...++..+...|+.++|...++++++. +.++....
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~----------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~----- 300 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTR----------HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVL----- 300 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHh----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHH-----
Confidence 222233334444444333222 46778999999999999999999999999995 44554332
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHH----
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK-ARL---- 565 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~---- 565 (713)
..+. ...++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. .++
T Consensus 301 -------l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 301 -------LIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred -------HHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1233 34599999999999999999999999999999999999999999999999999999887 333
Q ss_pred ------HHHHHHHHHHHHhC
Q 005125 566 ------EAAIQDYEMLIREI 579 (713)
Q Consensus 566 ------~~A~~~~~~al~~~ 579 (713)
++|.++|++++.+.
T Consensus 372 ~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHcCCHHHHHHHHHHHHhhh
Confidence 88899999988764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-17 Score=157.22 Aligned_cols=274 Identities=15% Similarity=0.094 Sum_probs=240.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGL--GRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
-...+..++++|+++.|++.+.-.-..+... ..+-.++..+++.+ .++.+|..+...++.++..++.++.+.|.+-+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 3456778899999999999987665555443 33556676666664 48999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
..|++++|.+.|+.++. -+... ..++++.+..+..+|++++|+++|-+.-.+--++ .++++.++.+|..+.+
T Consensus 502 ~ngd~dka~~~ykeal~-ndasc------~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qianiye~led 573 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALN-NDASC------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANIYELLED 573 (840)
T ss_pred ecCcHHHHHHHHHHHHc-CchHH------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhC
Confidence 99999999999999998 55544 4778999999999999999999998876655555 3888999999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
..+|+++|.++..+-|+ ++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+...+
T Consensus 574 ~aqaie~~~q~~slip~----------dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew------------ 631 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPN----------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW------------ 631 (840)
T ss_pred HHHHHHHHHHhcccCCC----------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH------------
Confidence 99999999999998885 56789999999999999999999999999999999888774
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|..|....-+++|+.+|++|--+.|+.......++.|+.+.|+|.+|...|+...+..|.+.+.+-
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999987654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-16 Score=176.63 Aligned_cols=341 Identities=10% Similarity=-0.010 Sum_probs=245.3
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDR 284 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 284 (713)
+.|...+.......-.++.. ....+...|.+.| +.|..+++.+...+...|..+...|.+.|++++|+.+|++
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~-----~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~ 214 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQY-----MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHHHHHHhCCCcchH-----HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHH
Confidence 36777777666543222211 1223456777777 7799999996667888999999999999999999999999
Q ss_pred HHHhCC--C----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 285 AIAINS--S----------------------------------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR 328 (713)
Q Consensus 285 al~~~p--~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 328 (713)
.++..+ + +..++..+...|.+.|++++|...|++. .+.+..
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~v 291 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTV 291 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChh
Confidence 876432 1 2234566778899999999999999876 345788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
+|..+...|.+.|++++|++.|++.... +.|+. ..+......+...|++++|.+.+..+++.+......++.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 9999999999999999999999998651 34543 356666777888899999999999998887544457888
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIK 485 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 485 (713)
.+...|.+.|++++|...|++..+. +...|..+...|.+.|+.++|++.|++..+. .|+......
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~-------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRK-------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC-------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8899999999999999999987642 3446888888899999999999999887764 444332221
Q ss_pred HHH----------------HHHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005125 486 GVK----------------MAKA-------MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQ 542 (713)
Q Consensus 486 ~~~----------------~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 542 (713)
.+. .... ...+..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCC
Confidence 110 0000 123345666777777777777777654 2333 45567777777777777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHH
Q 005125 543 YEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIR 577 (713)
Q Consensus 543 ~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~ 577 (713)
++.|...+++.+++.|++...+. ++|.+.++...+
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777777554333 777777766554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=164.15 Aligned_cols=274 Identities=17% Similarity=0.189 Sum_probs=228.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
+.|+++..|...+..++..|+|++|+-.+++.++++|.....+...+.|+..+++..+|...++ +..++
T Consensus 78 ~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~--- 146 (486)
T KOG0550|consen 78 MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY--- 146 (486)
T ss_pred hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh---
Confidence 6677788899999999999999999999999999999999999999999999999999988887 11221
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
....|+..+++.+. .+......+...+..+.++...+++.+|+...-..+++++.+. ++++..|.++
T Consensus 147 --------~~anal~~~~~~~~----s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-~al~vrg~~~ 213 (486)
T KOG0550|consen 147 --------KAANALPTLEKLAP----SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-EALYVRGLCL 213 (486)
T ss_pred --------HHhhhhhhhhcccc----cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-HHHHhccccc
Confidence 12233344444333 2222223345567778888889999999999999999998886 7777889999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhh--hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKL--FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
...++.+.|+..|++++.++|++...- .........+...|.-.++.|++.+|.++|..+|.++|++.....
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na------ 287 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA------ 287 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH------
Confidence 999999999999999999999875532 222344667888899999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
..|.+++.+..++|+..+|+..++.++.++|....++...|.|+..+++|++|+++|+++++...+
T Consensus 288 --klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 --KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 235589999999999999999999999999999999999999999999999999999999998776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-17 Score=162.05 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
..+++-.+-.++...+++++|+..+.++|+++|.+..+|..++.++..+| ++++++..+++++..+|++..+|+..+.+
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 34456555566778899999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred HHHcCCH--HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 337 YFRLGEA--EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 337 ~~~~g~~--~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
+..+|+. ++++.++.++++ .+|.+. .+|..++.++.
T Consensus 116 l~~l~~~~~~~el~~~~kal~-~dpkNy-----------------------------------------~AW~~R~w~l~ 153 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILS-LDAKNY-----------------------------------------HAWSHRQWVLR 153 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHH-hCcccH-----------------------------------------HHHHHHHHHHH
Confidence 9988874 678888889988 888874 56666666666
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA---GR----FEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~----~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
..|++++|++++.++++.++. +..+|+.++.++... |. .++++.+..+++.++|++..+|.
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~----------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~-- 221 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVR----------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWR-- 221 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCC----------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHH--
Confidence 666666666666666666663 334566666666554 22 35788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 488 KMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
.++.++.. .++..+|+..+.+++...|..+.++..|+.+|...
T Consensus 222 ----------Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 222 ----------YLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ----------HHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 46666666 45678899999999999999999999999999853
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-16 Score=146.95 Aligned_cols=268 Identities=16% Similarity=0.086 Sum_probs=186.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 300 SAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
|.-+.-..+.++|++.|..+++.+|...+++..||.+|...|+.+.|+...+..+. .|+.. ......+...++..|+
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT-~~qr~lAl~qL~~Dym 118 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLT-FEQRLLALQQLGRDYM 118 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCc-hHHHHHHHHHHHHHHH
Confidence 44444445555566666666555555555666666666666666666555444332 23221 2233344555555555
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA 459 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 459 (713)
..|-++.|...|....+. |+....+.-.+..+|....+|++|++.-++..++.++.... ..+..++.++..+..
T Consensus 119 ~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~-----eIAqfyCELAq~~~~ 192 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV-----EIAQFYCELAQQALA 192 (389)
T ss_pred HhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh-----HHHHHHHHHHHHHhh
Confidence 566666665555554432 33334666777788888888888888888777777665443 346678888999989
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC-HHHHHHHHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-SVLLCNRAACRS 538 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 538 (713)
..+.+.|+..+.+|++.+|+...+-. .+|.++...|+|+.|++.++.+++.+|+. +.+...|..||.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi------------~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASI------------ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhh------------hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999999999999887776 58999999999999999999999999876 677888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 539 KLGQYEKAVEDCTAALIVMPSYSKARL-----------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 539 ~~g~~~~A~~~~~~al~~~p~~~~a~~-----------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
++|+.++.+..+.++.+..++...... +.|.....+-+...|+-......
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 999999999999999998877543332 66777777777777775544433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-16 Score=160.14 Aligned_cols=353 Identities=17% Similarity=0.089 Sum_probs=248.7
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cC--CCCHHHHHHHHHHHH-HhcCHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LN--KLDPEELKFMGNEAY-NKARFEDA 278 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~--~~~~~~~~~lg~~~~-~~g~~~~A 278 (713)
+.+.++|++++-.. ....+ ..+.++.++...+ -.|.-+++. .. |.++..+...+..+. ..+.++++
T Consensus 340 ~~lae~fE~~~~~~--~~~~e----~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 340 EVLAEQFEQALPFS--FGEHE----RWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHhHhh--hhhHH----HHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 36667777766433 11122 2234566665555 235555554 33 556666655555444 46788888
Q ss_pred HHHHHHHHHhCC-----CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 279 LALYDRAIAINS-----SKATYRSNKSAALIGL-----------GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 279 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
+.+..+++...- -.+..+..+|.+|..+ ....++++.++++++.+|.++.+.+.++.-|..+++
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~ 493 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQ 493 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 888888887321 1245667777777543 235678888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHH
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEA 422 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 422 (713)
.+.|+++.+++++ +.+.+. ...|..++.+....+++.+|+...+.++...+++. ........+-...++.++|
T Consensus 494 l~sAl~~~~eaL~-l~~~~~-----~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~-~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 494 LTSALDYAREALA-LNRGDS-----AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH-VLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHHHHHHHH-hcCCcc-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh-hhchhhhhhhhhcccHHHH
Confidence 8888888888888 755543 35566677777778888888888888887777643 2222222333334444444
Q ss_pred HHHhhccccCChh----------------------------h----HH----------hhhc----cc------------
Q 005125 423 HDSYNKSPKFCLE----------------------------Y----YT----------KLFG----LA------------ 444 (713)
Q Consensus 423 ~~~~~~al~~~~~----------------------------~----~~----------~~~~----~~------------ 444 (713)
+..+...+.+-.+ . .. .-.+ ++
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 4433322211110 0 00 0000 00
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 445 -GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 445 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
.....|...+..+...+..++|.-++.++-.++|..+..|+ ..|.++...|++.+|.+.|..|+.++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~------------~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY------------LRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH------------HhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01346778888999999999999999999999998888887 68999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 524 AYNSVLLCNRAACRSKLGQYEKAVE--DCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 524 p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+ ++|.++|+.|+++++.+|-
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999888888 99999999999999999 8999999999999988874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-16 Score=140.73 Aligned_cols=161 Identities=23% Similarity=0.205 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN---N 480 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~ 480 (713)
.+|..++.+|...|+.+.|.+.|++|+.+.|+ +.+++++.|..++.+|++++|...|++|+. +|. .
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~ 138 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPN----------NGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEP 138 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----------ccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCc
Confidence 56666666666667777777777777666664 455888899999999999999999999997 444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
...+. |+|.+..++|+++.|.++|+++++++|+.+.....++..+++.|++..|..+++......+-.
T Consensus 139 s~t~e------------N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 139 SDTLE------------NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred chhhh------------hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence 45555 899999999999999999999999999999999999999999999999999999998877755
Q ss_pred hHHHH-----------HHHHHHHH-HHHHhCCCCHHHHH
Q 005125 561 SKARL-----------EAAIQDYE-MLIREIPGNEEVGR 587 (713)
Q Consensus 561 ~~a~~-----------~~A~~~~~-~al~~~p~~~~~~~ 587 (713)
...++ ..+...|+ +.-++.|..++...
T Consensus 207 A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 207 AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 54444 23333343 34456676665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-15 Score=138.94 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+.+.+|+.+...|..+.||.+-+..++ .|+. ..++..+|.=|...|-++.|...|....+...--..++..|..
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 455666666666666666665554433 2332 2355566666666666666666666655544444556666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+|....++++|++.-++... +.++.. .......+..++..+....+.+.|...+.++++.+|... .+-..+|.++..
T Consensus 150 IYQ~treW~KAId~A~~L~k-~~~q~~-~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-RAsi~lG~v~~~ 226 (389)
T COG2956 150 IYQATREWEKAIDVAERLVK-LGGQTY-RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-RASIILGRVELA 226 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHH-cCCccc-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-ehhhhhhHHHHh
Confidence 66666666666666666555 554432 122222333333333334444444444444444444432 344444555555
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
.|+|+.|++.++.+++.+|++. +.+.-.+..+|..+|+.++.+..+.++.+..+.
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl---------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYL---------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 5555555555555544444432 223344444455555555555555544444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=162.37 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=177.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 005125 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376 (713)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 376 (713)
+..|..+++.|+..+|+-+|+.++..+|.+.++|..||.+....++-..|+..++++++ ++|++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~-LdP~Nl-------------- 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE-LDPTNL-------------- 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-cCCccH--------------
Confidence 57899999999999999999999999999999999999999999999999999999999 999984
Q ss_pred HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc-cCcHHHHHHHHH
Q 005125 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL-AGGAYLLIVRAQ 455 (713)
Q Consensus 377 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~lg~ 455 (713)
.++..||..|...|.-.+|+.++.+-+...|.+....... ..... ...
T Consensus 354 ---------------------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~ 402 (579)
T KOG1125|consen 354 ---------------------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTK 402 (579)
T ss_pred ---------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCc
Confidence 4455555555555555555555555544443321111000 00000 000
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDP--NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
-......+..-.+.|-.+....| .++++.. .||.+|...|+|++|+.+|+.||...|++...|..|
T Consensus 403 s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~------------~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 403 SFLDSSHLAHIQELFLEAARQLPTKIDPDVQS------------GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh------------hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 00001122334556666777777 6788887 599999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCC
Q 005125 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~ 581 (713)
|..+..-.+.++|+..|.+|+++.|.+..+++ .+|+.+|-.||.+.+.
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999988 8999999999998776
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-14 Score=162.79 Aligned_cols=291 Identities=10% Similarity=0.046 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRI--DPCYHRAHHRLA 334 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 334 (713)
+...|..+-..|.+.|++++|..+|+++.+.... +...|..+...|.+.|++++|+..|+++... .|+ ...|..+.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI 549 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALI 549 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 3344444444555555555555555554443221 3444555555555555555555555554432 222 34455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
..|.+.|++++|.+.|.++... +.|+. ..+..+...+.+.|++++|.+.|+.+.+.+.......|..+..
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-------vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDH-------ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 5555555555555555554320 12321 2333344455556666666666666666554333456666666
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-NNKEVIKGVKMA 490 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 490 (713)
.|.+.|++++|+.+|+++....- ..+...|..+...|.+.|++++|.+.++++.+... -+...+.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv---------~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn----- 688 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGV---------KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS----- 688 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-----
Confidence 66666666666666666544211 11344556666666666777777777666665432 1233333
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH-
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEH--EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV--MPSYSKARL- 565 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~- 565 (713)
.+...|.+.|++++|+..|++..+. .| +...|..+...|.+.|++++|++.|+++... .|+......
T Consensus 689 -------sLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 689 -------SLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred -------HHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6888889999999999999887653 44 5678888999999999999999999987654 455322111
Q ss_pred ----------HHHHHHHHHHHHh
Q 005125 566 ----------EAAIQDYEMLIRE 578 (713)
Q Consensus 566 ----------~~A~~~~~~al~~ 578 (713)
++|.+.|.++++.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 7888888888764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-14 Score=161.31 Aligned_cols=315 Identities=11% Similarity=0.025 Sum_probs=250.4
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcC----CCCHHHHHHHHHHHHHhcCHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLN----KLDPEELKFMGNEAYNKARFEDAL 279 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~ 279 (713)
.++|...|+++.+....|+... +. .+-..|.+.| ++|..+++.+. ..+...|..+...|.+.|++++|+
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~t----yn-sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKL----YT-TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHH----HH-HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 4567777777766544332111 22 2344455555 66888887722 457889999999999999999999
Q ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 280 ALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 280 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
.+|.+..+. .| +...|..+...|.+.|++++|.+.|+++... .|+ ...|..+..+|.+.|++++|.+.|+.+
T Consensus 528 ~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 528 GAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999775 34 3678999999999999999999999999763 454 678888999999999999999999999
Q ss_pred hhhhcc-ccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccC
Q 005125 354 SSLANQ-KDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432 (713)
Q Consensus 354 l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (713)
.+ .+. .+ ...+..+...+.+.|++++|+..|......+-......|..+...|.+.|++++|.++++++.+.
T Consensus 606 ~e-~gi~p~------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 606 HE-YNIKGT------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HH-cCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88 442 22 24566677788899999999999999988743333478889999999999999999999998764
Q ss_pred ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Q 005125 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYK 510 (713)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 510 (713)
... .+...+..+...|.+.|++++|++.|++.... .|+ ...|. .+...|.+.|+++
T Consensus 679 G~~---------pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN------------~LI~gy~k~G~~e 736 (1060)
T PLN03218 679 GIK---------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMN------------ALITALCEGNQLP 736 (1060)
T ss_pred CCC---------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHHCCCHH
Confidence 321 35668899999999999999999999998764 343 44455 6889999999999
Q ss_pred HHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 511 EACYAYSEGLEH--EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 511 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
+|++.|++.... .| +...|..+...+.+.|++++|...+.++++..
T Consensus 737 eAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 737 KALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999988754 45 56778888899999999999999999998854
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=153.29 Aligned_cols=212 Identities=14% Similarity=0.085 Sum_probs=180.5
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 005125 273 ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG-EAEKAVSHYK 351 (713)
Q Consensus 273 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 351 (713)
++|.+|..+|+.++. ..+++++|+..+.++|.++|++..+|...+.++..+| ++++++..+.
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 456666666665554 4577889999999999999999999999999999998 6799999999
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH--HHHHHHhhcc
Q 005125 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH--QEAHDSYNKS 429 (713)
Q Consensus 352 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a 429 (713)
+++. .+|++. .+|..++.++..+|+. ++++.+++++
T Consensus 97 ~~i~-~npkny-----------------------------------------qaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 97 DVAE-DNPKNY-----------------------------------------QIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred HHHH-HCCcch-----------------------------------------HHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 9999 888873 6788888888888864 7889999999
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA--- 506 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~--- 506 (713)
+..+|+ +..+|..++.++...|++++|++++.++|+.+|.+..+|. .++.++...
T Consensus 135 l~~dpk----------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~------------~R~~vl~~~~~l 192 (320)
T PLN02789 135 LSLDAK----------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN------------QRYFVITRSPLL 192 (320)
T ss_pred HHhCcc----------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH------------HHHHHHHhcccc
Confidence 999996 4558999999999999999999999999999999999998 577776655
Q ss_pred ccH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 507 SKY----KEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 507 g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|.+ ++++.+..++|..+|++..+|..++.++.. +++..+|+..+.+++...|.+..+.-
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 333 578999999999999999999999999988 56678899999999998888776543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-15 Score=167.58 Aligned_cols=290 Identities=11% Similarity=-0.011 Sum_probs=238.7
Q ss_pred hhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Q 005125 236 MGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAIN-SSKATYRSNKSAALIGLGRQIEA 312 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 312 (713)
+...|.+.| ++|..+++.+.+.+..+|..+...|.+.|++++|+.+|++..+.. .-+...+..+..++...|++++|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 445566666 678889988888899999999999999999999999999987643 22456788889999999999999
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 005125 313 LVECKEAIRID-PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391 (713)
Q Consensus 313 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 391 (713)
.+.+..+++.. +.+..++..|...|.+.|++++|...|++..+ |+ ...|..+...+...|++++|++.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d-------~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KN-------LISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC-------eeeHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998875 45677888999999999999999999998755 22 245677788888999999999999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 392 QNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 392 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
++....+.......|..+..++...|..++|..+|+.+.+... ...+...|..+..+|.+.|++++|.+.++
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--------~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--------IKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--------CCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 9988765444347788888999999999999999998864211 11234567888999999999999999987
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
++ ...|+ ...|. .+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++++|.+.++
T Consensus 487 ~~-~~~p~-~~~~~------------~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 487 RA-PFKPT-VNMWA------------ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HC-CCCCC-HHHHH------------HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 64 23333 34454 578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 005125 552 AALIVM 557 (713)
Q Consensus 552 ~al~~~ 557 (713)
...+..
T Consensus 553 ~m~~~g 558 (697)
T PLN03081 553 TLKRKG 558 (697)
T ss_pred HHHHcC
Confidence 887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=147.29 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=102.4
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID--PNNKEV 483 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 483 (713)
+..+|.++...|++++|+..|++++...|. ...++..+|.++...|++++|+..|++++... +.....
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLNPN----------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH
Confidence 333444444444444444444444444332 22355666777778888888888888887643 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+. .+|.++...|++++|+..|.+++..+|+++..+..+|.++...|++++|+..++++++..|.+...
T Consensus 138 ~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 138 LE------------NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred HH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 43 689999999999999999999999999999999999999999999999999999999998877666
Q ss_pred HH
Q 005125 564 RL 565 (713)
Q Consensus 564 ~~ 565 (713)
+.
T Consensus 206 ~~ 207 (234)
T TIGR02521 206 LW 207 (234)
T ss_pred HH
Confidence 55
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=147.42 Aligned_cols=337 Identities=13% Similarity=0.057 Sum_probs=248.9
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALY 282 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 282 (713)
+.+...+.+|...|+ +.+ .++++|..+...| ++|...... .++...-.|+.+|..+....+|++|+.+|
T Consensus 25 kgLK~~~~iL~k~~e--Hge----slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPE--HGE----SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred hHHHHHHHHHHhCCc--cch----hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 566677777777753 333 5667888888888 556666665 67788889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-ccc
Q 005125 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-QKD 361 (713)
Q Consensus 283 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-p~~ 361 (713)
+.|+.++|++..+|..++....++++++.....-.+.+++.|..-..|..+|..+...|++..|....+....... +-.
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888777666221 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
..........+.+..+..+.|.+++|++.+..--..--+.. ......|.++++++++++|+..|...+..+|+...
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~--- 254 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD--- 254 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH---
Confidence 34455566677777888888888888777665432222221 34445688999999999999999999999997544
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHH------------------------------------
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAV-KTAQDAAQIDPNNKEVI------------------------------------ 484 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~------------------------------------ 484 (713)
.+..+-.++.+..+--+++ ..|...-+..|......
T Consensus 255 -------Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 255 -------YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred -------HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 2233333332222223333 33333322211111000
Q ss_pred HH---------HHHH--------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 485 KG---------VKMA--------------------------KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 485 ~~---------~~~~--------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
.+ +..+ ..+..++.++..+...|+++.|..+.+.|+...|..++.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 00 0000 015566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
|...|.++...|++++|...++.+.++|-.+.
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999986543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=155.37 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=266.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY--HRAHH 331 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 331 (713)
+++.-+.+|..+|..|..-.+...|..+|++|.++|+.++.++-..+..|....+++.|...+-.+-+..|.. ...|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 8888899999999999999999999999999999999999999999999999999999999988877777754 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.+|..|...+++..|+..|+.+++ .+|.+. ..|..++.+|...|++..|++.|.++..++|.+. ...+..+.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR-~dPkD~------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~ 638 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALR-TDPKDY------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAV 638 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhc-CCchhH------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHH
Confidence 799999999999999999999999 999984 7788899999999999999999999999999986 56666799
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-CCCHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-------D-PNNKEV 483 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~-p~~~~~ 483 (713)
+...+|+|.+|+..+...+.....+..... ..++.+...+..+.-.|=+.+|..+++++++. . .++...
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~---gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQN---GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999988765554433222 34566667777777777666666666665432 1 111111
Q ss_pred HHHHHH------------------------H--------------------------HHHHHHHHHHHHHHH--------
Q 005125 484 IKGVKM------------------------A--------------------------KAMASARLRGNLLFK-------- 505 (713)
Q Consensus 484 ~~~~~~------------------------~--------------------------~~~~~~~~lg~~~~~-------- 505 (713)
|..... . .....|+++|..|++
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 111000 0 003346788888776
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHH
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYE 573 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~ 573 (713)
+.+-..|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|+ +.|.+.|.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 2344589999999999999999999999988 7779999999999999999999998888 88999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Q 005125 574 MLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 574 ~al~~~p~~~~~~~~l~~~~~~l 596 (713)
++..++|.|...+.+......++
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAV 897 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHH
Confidence 99999999988766654444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=161.47 Aligned_cols=330 Identities=12% Similarity=0.026 Sum_probs=227.5
Q ss_pred chhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCC--CCHHHHHHHHHHHHHhcCHHH
Q 005125 205 ATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNK--LDPEELKFMGNEAYNKARFED 277 (713)
Q Consensus 205 ~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~--~~~~~~~~lg~~~~~~g~~~~ 277 (713)
+..+|..+|++|.++||. .+.++ ...+..|.+.. ++|....-. ..| .-.+.|..+|..|...+++..
T Consensus 507 Dm~RA~kCf~KAFeLDat--daeaa----aa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT--DAEAA----AASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHhcCCch--hhhhH----HHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 445777777777777752 12211 11344444444 333333222 111 122456678888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 357 (713)
|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+..+.+-.+.+...+|+|.+|+..+...+. .
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~-~ 659 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY-A 659 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H
Confidence 888889999999998889999999999999999999999999989998888888888888888999999888888776 3
Q ss_pred cccc-HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-------cCCCChHHHHHHHHHHHHHccCHH---------
Q 005125 358 NQKD-IAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS-------FGADSAPQVYALQAEALLRLQRHQ--------- 420 (713)
Q Consensus 358 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~la~~~~~~g~~~--------- 420 (713)
.... .........++..+..+...|-+.+|...++++++ ..-......|..+|.+..-.-+.+
T Consensus 660 ~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l 739 (1238)
T KOG1127|consen 660 FSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYL 739 (1238)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHH
Confidence 3222 12222233344444444445555555555554443 221111233333333322111111
Q ss_pred --------------------HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--------cCCHHHHHHHHHH
Q 005125 421 --------------------EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--------AGRFEDAVKTAQD 472 (713)
Q Consensus 421 --------------------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~ 472 (713)
-|.+++-..++ ....+..|+++|.-|+. +.+...|+.++.+
T Consensus 740 ~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-----------l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 740 IILSKQLEKTGALKKNDLLFLGYECGIAHLS-----------LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHhhHHHH-----------HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 12222222221 12246678999988876 3344689999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 473 AAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 473 al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
++++..++...|. .+|.+ ...|++.-|..+|-+++...|.....|.|+|.++.+..+++-|...|.+
T Consensus 809 aV~L~ann~~~Wn------------aLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 809 AVSLCANNEGLWN------------ALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHhhccHHHHH------------HHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 9999999999998 57877 6679999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHH
Q 005125 553 ALIVMPSYSKARL 565 (713)
Q Consensus 553 al~~~p~~~~a~~ 565 (713)
+..++|.+...|+
T Consensus 876 ~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWL 888 (1238)
T ss_pred hhhcCchhhHHHH
Confidence 9999999998888
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-14 Score=167.26 Aligned_cols=321 Identities=13% Similarity=0.017 Sum_probs=218.6
Q ss_pred hhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 238 NIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--NSSKATYRSNKSAALIGLGRQIEAL 313 (713)
Q Consensus 238 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 313 (713)
..|.+.| ++|..+++.+...+...|..+...|.+.|++++|+.+|++..+. .|+.. .+..+-.++...|++++|.
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 3344444 55777777765566777777777777888888888887776553 34432 3333334555566666666
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005125 314 VECKEAIRIDP-CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQ 392 (713)
Q Consensus 314 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 392 (713)
+.++.+++... .+..++..|...|.+.|++++|.+.|++..+ .+. ..|..+...+...|++++|+..|+
T Consensus 410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~---------vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDV---------ISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCe---------eeHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666655432 2355667777777777777777777776544 221 234444555556666667766666
Q ss_pred HHHHcC-CC---------------------------------ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 393 NVISFG-AD---------------------------------SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 393 ~al~~~-p~---------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
+.+... |+ ....++..+...|.+.|++++|...|+.. .
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~----- 551 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---E----- 551 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---C-----
Confidence 665432 22 11223344557788889999998888875 2
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
.+...|..+...|...|+.++|++.|++..+. .|+..... .+-..+.+.|++++|..+|
T Consensus 552 ------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------------~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 552 ------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI-------------SLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred ------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH-------------HHHHHHhhcChHHHHHHHH
Confidence 24568889999999999999999999998874 56554433 3556788999999999999
Q ss_pred HHHhcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCC
Q 005125 517 SEGLEH---EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 517 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~ 581 (713)
+...+. .| +...|..+..++.+.|++++|.+.+++. .+.|+. ..|. +.+....+++++++|+
T Consensus 613 ~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 613 HSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-AVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 998844 34 5678999999999999999999999986 355653 2222 6777888899999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 005125 582 NEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 582 ~~~~~~~l~~~~~~l~~~ 599 (713)
+......|........+|
T Consensus 690 ~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 690 SVGYYILLCNLYADAGKW 707 (857)
T ss_pred CcchHHHHHHHHHHCCCh
Confidence 988776665544444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-14 Score=147.75 Aligned_cols=210 Identities=12% Similarity=-0.045 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
+|+.+.++..+|..+...|++++|...+.++.+..|.+ .+..+..+.++...|++++|+..++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 57777888888888888888888888888887776644 445667788888888888888888888888888877766
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
. +..+...|++..+.....+++.. ..|.. .......+..+...|++++|+..++++++..|++. .++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~-~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA-WAVHA 153 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-HHHHH
Confidence 5 55555555444444444443321 33333 24455667777788888888888888888888874 66777
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
+|.++...|++++|+.++++++...|.... .....+..+|.++...|++++|+..|++++...|
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSM------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcc------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 788888888888888888888877653111 1233566788888888888888888888876555
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-15 Score=153.41 Aligned_cols=231 Identities=20% Similarity=0.179 Sum_probs=171.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|....+..+++..|...|+|++|+..|++++++ +|.-......+|.+|..++++.+|+..|++|+. +...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-IREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHH
Confidence 4555666777888888888888888888888877 555555566688888888888888888888777 2111
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
.+-.+......++.+||.+|...|++++|..++++|+.+......
T Consensus 274 ---------------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~-- 318 (508)
T KOG1840|consen 274 ---------------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG-- 318 (508)
T ss_pred ---------------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--
Confidence 000111112378889999999999999999999999887655111
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-----NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
...+..+..+.+++.++..++++++|+.+|++++++.- +++.. .....++|.+|+.+|+|++|.+.
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~---------a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL---------AKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH---------HHHHHHHHHHHHHhcchhHHHHH
Confidence 11223466788999999999999999999999998632 22111 11233899999999999999999
Q ss_pred HHHHhccC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHH
Q 005125 516 YSEGLEHE--------AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV----MPSYSKAR 564 (713)
Q Consensus 516 ~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~ 564 (713)
|++|+.+. +.....+.++|..|.+++++.+|...|..++.+ .|+++...
T Consensus 390 ~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 390 YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99999763 334678899999999999999999999998875 45554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=146.38 Aligned_cols=284 Identities=11% Similarity=0.011 Sum_probs=221.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHRAHH 331 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 331 (713)
+-.-|.-+++.|++...+.+|+.|++...++. .+|..+|.+|+.+++|++|+++-..=+.+ .-..+.+--
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 56678889999999999999999999877663 46788999999999999999886543332 223356677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh--------------------cHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK--------------------RWNDLLKET 391 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~A~~~~ 391 (713)
+||..+..+|.|++|+.++.+-+. +...-.+......++++++.+|...| .++.|.+.|
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd-~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLD-FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhH-HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 899999999999999999999888 76666666777788888888887643 345566666
Q ss_pred HHHHHcCCCC-----hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 392 QNVISFGADS-----APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 392 ~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
..-+++.... ...+|-++|..|+-+|+|+.|+..-+.-+.+..++.+.. ..-.++.++|.++.-.|+++.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA----aeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA----AERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH----HHHHhhcccchhhhhhcccHhH
Confidence 6666553221 126788889999999999999999998888777665532 2356889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHc
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA------YNSVLLCNRAACRSKL 540 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~ 540 (713)
+++|++++.+.-. +-.+...+.+.+.+|+.|.-..++++||.++.+-+.+.. ....+++.||..|-.+
T Consensus 255 ~ehYK~tl~LAie------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 255 IEHYKLTLNLAIE------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred HHHHHHHHHHHHH------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999998754211 111122234456899999999999999999999777643 3467899999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 005125 541 GQYEKAVEDCTAALIV 556 (713)
Q Consensus 541 g~~~~A~~~~~~al~~ 556 (713)
|..++|+.+.++.+++
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999888775
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-13 Score=138.04 Aligned_cols=336 Identities=18% Similarity=0.137 Sum_probs=252.1
Q ss_pred CCCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCH
Q 005125 201 HCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARF 275 (713)
Q Consensus 201 ~~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~ 275 (713)
.+....++|..+...++..|+.+ .+ +.+++|.+++... ++|+.++.. +.|+|-..|..++..-.+.+++
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S-----~v-CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKS-----HV-CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hcccchHHHHHHHHHHhccCccc-----ch-hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 45667899999999999999742 22 5677999998888 679999987 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID---PCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
+-....-.+.++..|..-..|...|.++...|++..|....+...+.. |.....-......|..+-..+... ++.
T Consensus 126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ 203 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS--LQK 203 (700)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc--HHH
Confidence 999999999999999999999999999999999999999988877765 443334444444444433333332 666
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHH-HHhhcccc
Q 005125 353 SSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH-DSYNKSPK 431 (713)
Q Consensus 353 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 431 (713)
+++.+..........+......+..+..++++++|+..|...+..+|++. ..|..+-.++....+--+++ ..|...-+
T Consensus 204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~-~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL-DYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 66634444445566677778889999999999999999999999999986 44444444443222222222 22222100
Q ss_pred C------------------------------------------------Chh---hHHhh-------------h------
Q 005125 432 F------------------------------------------------CLE---YYTKL-------------F------ 441 (713)
Q Consensus 432 ~------------------------------------------------~~~---~~~~~-------------~------ 441 (713)
. .|. ..... +
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 0 000 00000 0
Q ss_pred ---cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 442 ---GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 442 ---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
.+..-...++.++.-+...|+++.|..+++.|+...|.-.+.+. ..|.++...|++++|..++.+
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~------------~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL------------VKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH------------HHHHHHHhcCChHHHHHHHHH
Confidence 00112456677888999999999999999999999999988887 589999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
+-++|-.+...-..-|.-..+.++.++|.+.+.+.-+..
T Consensus 431 a~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 431 AQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999987665555567888899999999999888766554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=140.25 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=158.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR-- 328 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 328 (713)
..+..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4467788999999999999999999999999999999875 58899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 329 -AHHRLAMLYFRL--------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 329 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
+++.+|.++... |++++|+..|++++. ..|++......+.. .... ...+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~---~~~~-------~~~~----------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAKKR---MDYL-------RNRL----------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHHHH---HHHH-------HHHH-----------
Confidence 799999999986 889999999999999 99987533221111 0100 0000
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
......+|.+|...|++++|+..|++++...|+.. ..+.+++.+|.++...|++++|..+++......|
T Consensus 166 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 166 ---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTP-------ATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12334678999999999999999999998877531 2467899999999999999999999888766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-13 Score=157.74 Aligned_cols=293 Identities=12% Similarity=0.002 Sum_probs=205.6
Q ss_pred hhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC--------------------
Q 005125 236 MGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--NSS-------------------- 291 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~-------------------- 291 (713)
+-..|.+.| ++|..+++.+...+...|..+-..|.+.|++++|+.+|.+..+. .|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 334455555 66888888877778889999999999999999999999998764 333
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-
Q 005125 292 --------------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL- 356 (713)
Q Consensus 292 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 356 (713)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|++.|+++...
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 34456667777778888888888887753 234567888888888888888888888876541
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh
Q 005125 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 357 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
+.|+. ..+......+...|++++|.+.+..+++.+......++..+...|.+.|++++|.+.|++....
T Consensus 385 ~~Pd~-------~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---- 453 (857)
T PLN03077 385 VSPDE-------ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---- 453 (857)
T ss_pred CCCCc-------eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----
Confidence 34554 2333444456678888899998888888876665678888999999999999999999987642
Q ss_pred HHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH------H---HH-------------H
Q 005125 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-DPNNKEVIKGVKM------A---KA-------------M 493 (713)
Q Consensus 437 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~------~---~~-------------~ 493 (713)
+...|..+...|...|++++|+..|++.+.. .|+.......+.. + .. .
T Consensus 454 ---------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 454 ---------DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred ---------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 3346788889999999999999999998753 3433222211110 0 00 0
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
.....+-..|.+.|++++|...|+.. +.+...|..+...|.+.|+.++|++.|++..+
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01112345566666666666666654 33556666666666666666666666666655
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=122.84 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=77.4
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
...++.|++ ||+|+.+.|.|.+++.+||++.|++||+|+.++++..++|..+|||.||++|+.++++.|+++++|++.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~~~ 101 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELEKK 101 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHHHH
Confidence 555667888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 005125 708 VKLY 711 (713)
Q Consensus 708 ~~~~ 711 (713)
|.++
T Consensus 102 i~~~ 105 (106)
T KOG0907|consen 102 IAKH 105 (106)
T ss_pred HHhc
Confidence 9875
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=137.56 Aligned_cols=100 Identities=27% Similarity=0.581 Sum_probs=91.7
Q ss_pred ceeecchhHHHHHhhcCC--ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSPG--MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~--~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+..+|...+...+ .++|.|++ ||+|+.+.|+|..++.+||+.+|++||+|++...+..+||.++|||++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 345667788888776665 66777999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|.+++++.|+++..|+++|++|.
T Consensus 83 ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred cCeEeeeecCCCHHHHHHHHHHHh
Confidence 999999999999999999999985
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=126.48 Aligned_cols=101 Identities=24% Similarity=0.409 Sum_probs=91.0
Q ss_pred cceeecchhHHHHH-hhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 612 NLVFVSSNERFRHF-VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 612 ~i~~~~~~~~~~~~-l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.+..+.+..+|... +....+++|.|++ ||+|+.+.|.++++..+| +.+.|++||.|+.++++..|+|.++||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 34455667788775 4667889999999 999999999999999998 6699999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++|+.++++.|+ +.+.|.++|+++.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 999999999999 9999999999874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=135.51 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=147.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH---RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.+|...|++++|+..|+++++ ..|++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~-- 105 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPD-- 105 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCc--
Confidence 345577888888888888888888888888888888764 5778888888888888888888888888 7776521
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
.+.+++.+|.++...
T Consensus 106 ------------------------------------~~~a~~~~g~~~~~~----------------------------- 120 (235)
T TIGR03302 106 ------------------------------------ADYAYYLRGLSNYNQ----------------------------- 120 (235)
T ss_pred ------------------------------------hHHHHHHHHHHHHHh-----------------------------
Confidence 013445555555432
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA-----MASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
.+.++...|++++|+..|++++..+|++...+..+..+.. ......+|.+++..|++.+|+..|++++
T Consensus 121 -------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 121 -------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred -------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0112223467899999999999999998766543322211 1123468999999999999999999999
Q ss_pred ccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 521 EHEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 521 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+..|+. +.+++.+|.++..+|++++|..+++......|+
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 997754 689999999999999999999998888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=126.77 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=109.9
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
..+|+++++++|+ .++.+|.++...|++++|+.+|++++.++|.+..++. .+|.+
T Consensus 13 ~~~~~~al~~~p~-------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~------------~lg~~ 67 (144)
T PRK15359 13 EDILKQLLSVDPE-------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHI------------ALAGT 67 (144)
T ss_pred HHHHHHHHHcCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------HHHHH
Confidence 4567788888775 2556799999999999999999999999999999998 79999
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+++..+.
T Consensus 68 ~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 68 WMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=151.49 Aligned_cols=280 Identities=10% Similarity=0.011 Sum_probs=198.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|.+.+++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.+|.-. .++.+.+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 56888899999999999999999999999999999999999999999999999987777665 5555544433
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
++ .+++++-..+. ..+.+. .++..+|.+|..+|++++|...|+++++.+|++ +.+.+++|..|
T Consensus 98 --------~~-~~ve~~~~~i~-~~~~~k------~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~ 160 (906)
T PRK14720 98 --------KW-AIVEHICDKIL-LYGENK------LALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSY 160 (906)
T ss_pred --------ch-hHHHHHHHHHH-hhhhhh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHH
Confidence 11 11122221111 111111 233344444444444444444444444444444 38889999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HH-
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM-AK- 491 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~- 491 (713)
... ++++|+.++.+|+. .+...+++.++.+++.+.+..+|++.+....+.+ +.
T Consensus 161 ae~-dL~KA~~m~~KAV~------------------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~ 215 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIY------------------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLG 215 (906)
T ss_pred HHh-hHHHHHHHHHHHHH------------------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHh
Confidence 999 99999999999864 2556679999999999999999998876543222 11
Q ss_pred ------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Q 005125 492 ------AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP-SYSKAR 564 (713)
Q Consensus 492 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~ 564 (713)
.+..+.-+-..|...++|++++..++.+++++|.+..+...++.||. +.|.. ...++.++++.. .+..--
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~ 292 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKP 292 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCcc
Confidence 13334445577888999999999999999999999999999999998 55554 666666666532 122223
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 005125 565 LEAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 565 ~~~A~~~~~~al~~~p~~~~~~ 586 (713)
+..|+..|++-+.+++++.-..
T Consensus 293 ~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 293 VKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHHHHHHHHHeeecCCCEEEE
Confidence 3679999999999998886543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=142.73 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAIN------SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC------YHR 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 328 (713)
+|..+|++|+..++|++|+++-.--|.+. -..+...-++|.++-.+|.|++|+.++.+-+.+... ...
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 57899999999999999999866544331 223556778999999999999999999998876432 267
Q ss_pred HHHHHHHHHHHcCC-------------HHHHHHHHHHHhhhhccccHHHH-------HHHHHHHHHHHHHHHhhcHHHHH
Q 005125 329 AHHRLAMLYFRLGE-------------AEKAVSHYKKSSSLANQKDIAKA-------EALHKHLTKCNEARELKRWNDLL 388 (713)
Q Consensus 329 ~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~ 388 (713)
+++++|.+|...|+ .+++...++.|++ ..-.+.... ..-.++-+++..|.-+|+|+.|+
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~-fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK-FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH-HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 99999999998764 2334444555544 333333222 22333445555666789999999
Q ss_pred HHHHHHHHcCCCC-----hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH
Q 005125 389 KETQNVISFGADS-----APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463 (713)
Q Consensus 389 ~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 463 (713)
...+.-+.+..+. ...++.++|.+|.-+|+++.|+++|+..+.+..+..+. ...+...|.+|..|.-..++
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r----~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR----TVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----hHHHHHHHHhhhHHHHHHHH
Confidence 9888777664332 23688899999999999999999999987765544332 23577889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----CC-CHHHHHHHHHHH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----AY-NSVLLCNRAACR 537 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~ 537 (713)
++|+.++.+-+.+... +-.++....+++.+|.++-..|..++|+.+.+..+++. +. ...+..|+...-
T Consensus 292 ~kAI~Yh~rHLaIAqe------L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~ 365 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQE------LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLI 365 (639)
T ss_pred HHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHH
Confidence 9999999998876433 22334445667789999999999999999998887652 22 345677888888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 005125 538 SKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~al~ 555 (713)
..+|..+.-....+..+.
T Consensus 366 ~~lG~~ds~~~~te~~i~ 383 (639)
T KOG1130|consen 366 LELGQEDSLVDDTELIID 383 (639)
T ss_pred HHhCCCcccCCcHHHHhh
Confidence 888876654444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-12 Score=133.45 Aligned_cols=279 Identities=18% Similarity=0.149 Sum_probs=207.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
+.+.+.....++...|++++|++++......-.+...++-.+|.++..+|++++|...|...|..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999988888888899999999999999999999999999999999999999998887
Q ss_pred HHcC-----CHHHHHHHHHHHhhhhccccHHHH-------------HHHHHHHH----HH---------HHHHHhhc---
Q 005125 338 FRLG-----EAEKAVSHYKKSSSLANQKDIAKA-------------EALHKHLT----KC---------NEARELKR--- 383 (713)
Q Consensus 338 ~~~g-----~~~~A~~~~~~al~~~~p~~~~~~-------------~~~~~~~~----~~---------~~~~~~~~--- 383 (713)
.... +.+.-...|+.... ..|...... ..+..++. ++ ..+.....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~-~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAE-KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHH-hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 4333 45666777776655 455422110 00111110 00 00110111
Q ss_pred HHHHHHHHHHHHHc-------------CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHH
Q 005125 384 WNDLLKETQNVISF-------------GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLL 450 (713)
Q Consensus 384 ~~~A~~~~~~al~~-------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 450 (713)
..+.+..|...++. .|.....+++.++..|...|++++|+.++++|+...|. .++.+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt----------~~ely 231 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT----------LVELY 231 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----------cHHHH
Confidence 11112222222211 11112246678899999999999999999999999984 57799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCC--
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE--AYN-- 526 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~-- 526 (713)
+..|.+|...|++.+|.+.++.|-.+++.+-.... ..+..+++.|+.++|.+.+..-...+ |..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs------------K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINS------------KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH------------HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 99999999999999999999999999999877666 57888899999999999988776554 211
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 527 -----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 527 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+....-|.+|.+.|++..|+..|..+.+..-+
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 233456789999999999999999998876433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-14 Score=132.44 Aligned_cols=103 Identities=33% Similarity=0.580 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++.+...|+-+++.++|.+|+..|.+||+++|.++.+|.++|.+|.++|.++.|++.++.+|.+||.+..+|.+||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.+|++++|++.|+++++ ++|++.
T Consensus 161 ~~gk~~~A~~aykKaLe-ldP~Ne 183 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE-LDPDNE 183 (304)
T ss_pred ccCcHHHHHHHHHhhhc-cCCCcH
Confidence 99999999999999999 999985
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-13 Score=121.06 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccH
Q 005125 342 EAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~ 362 (713)
++++|+..|++++. +.|++.
T Consensus 107 ~~~eAi~~~~~Al~-~~p~~~ 126 (144)
T PRK15359 107 EPGLAREAFQTAIK-MSYADA 126 (144)
T ss_pred CHHHHHHHHHHHHH-hCCCCh
Confidence 99999999999999 999885
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=135.79 Aligned_cols=205 Identities=16% Similarity=0.095 Sum_probs=148.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
||+.+.++..+|.++...|+.++|...+.++....|.+ .+..+..|.++...|++++|+..+++++. ..|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~P~~~--- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD-DYPRDL--- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcH---
Confidence 68888888888888888888888888888888776644 45666778888888888888888888888 777763
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----cCHHHHHHHhhccccCChhhHHhhh
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL----QRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
.++.. +..+... +....+...+.......|
T Consensus 78 --------------------------------------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 111 (355)
T cd05804 78 --------------------------------------LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP------- 111 (355)
T ss_pred --------------------------------------HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC-------
Confidence 22221 2233332 333344444433222222
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
.....+..+|.++...|++++|+..++++++++|++..++. .+|.++...|++++|+.++++++.
T Consensus 112 ---~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~------------~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 112 ---DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH------------AVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred ---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHH------------HHHHHHHHcCCHHHHHHHHHhhhh
Confidence 24556677888888888888888888888888888877665 588888888888888888888888
Q ss_pred cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 522 HEAYNS----VLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 522 ~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
..|..+ ..|..+|.++...|++++|+..|++++...|
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 776432 3466788888888888888888888876665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=115.67 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=73.2
Q ss_pred hHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.|...+. ..+.+++.|++ ||+|+.+.|.|++++.++++ +.|++||+|+.+.++..++|.++|||++|++|+.++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 45666665 35567888999 99999999999999999976 689999999999999999999999999999999999
Q ss_pred eecCC-CHH
Q 005125 695 EIPGH-QCE 702 (713)
Q Consensus 695 ~~~g~-~~~ 702 (713)
++.|. +..
T Consensus 83 ~~~G~~~~~ 91 (114)
T cd02954 83 IDLGTGNNN 91 (114)
T ss_pred EEcCCCCCc
Confidence 99987 433
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=112.70 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=80.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCc----HhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDH----PYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~----~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+|...+...+.+++.|++ ||+|+.+.|.|+++++.+ ..+.|+.+|+|.. +.++..++|.++|||++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 356788888788899999999 999999999999999874 4577999999975 789999999999999999999
Q ss_pred eEeeeecCC-CHHHHHHH
Q 005125 691 SRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~ 707 (713)
+.++++.|. +.+.|.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999997 88888765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-10 Score=118.50 Aligned_cols=373 Identities=16% Similarity=0.094 Sum_probs=243.7
Q ss_pred CchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 204 NATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISS--LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 204 ~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
.+.++|+....+.+...|++..+. .--+++.|-...-++|..+... .........+..+.+.|+.+..++|+..
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~----~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAI----RCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhH----hhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 344699999999999987533222 1112444433333566655555 2122223347999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------CC-CHHHH
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID------------------------------PC-YHRAH 330 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------------------p~-~~~~~ 330 (713)
++ -.++.+..++...|.+++++|+|++|+..|+..++-+ |+ ..+.+
T Consensus 102 ~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 102 LK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred Hh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 99 4566667788889999999999999999999885432 22 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh----h---ccc-cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSL----A---NQK-DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~----~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 402 (713)
++.|.++...|+|.+|++.+++++.. + +.. +....+.-.....++.++..+|+-.+|...|...++.+|.+.
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999441 1 111 112233344567788899999999999999999998877654
Q ss_pred HH------------------------------------------------HHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 403 PQ------------------------------------------------VYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 403 ~~------------------------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
+. ++.+.+.+.+..+.-+.+.+.........|
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p 338 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP 338 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc
Confidence 21 112222222233333333333333333333
Q ss_pred hhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Q 005125 435 EYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514 (713)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 514 (713)
... ..++..-+ .......+.+|.+++....+-+|.+.....+ .++.+.+.+|+++.|++
T Consensus 339 ~~~---------~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L-----------~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 339 ESL---------FPILLQEA-TKVREKKHKKAIELLLQFADGHPEKSKVVLL-----------LRAQLKISQGNPEVALE 397 (652)
T ss_pred hHH---------HHHHHHHH-HHHHHHHHhhhHHHHHHHhccCCchhHHHHH-----------HHHHHHHhcCCHHHHHH
Confidence 221 11222222 2222236888888888888888887333322 58889999999999999
Q ss_pred HHHHHh--------ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChH--------HHH-------HH
Q 005125 515 AYSEGL--------EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM----PSYSK--------ARL-------EA 567 (713)
Q Consensus 515 ~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~--------a~~-------~~ 567 (713)
.+...+ +.. ..+.+-..+-..|.+.++.+.|...+..|+.-. +.... +.+ ++
T Consensus 398 il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 999433 222 235555666677788888777777777776532 11111 111 89
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005125 568 AIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVK 605 (713)
Q Consensus 568 A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~ 605 (713)
|...+++.++.+|++.++.-.+.-+.-.+...+++++.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~ 514 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS 514 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence 99999999999999999887776666555444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=122.03 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
......|...|+|+......++.. +|.. -+...++.++++..+++++..+|+ ++..|.
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~--~~~~----------~~~~~~~~~~~i~~l~~~L~~~P~----------~~~~w~ 77 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLA--DPLH----------QFASQQTPEAQLQALQDKIRANPQ----------NSEQWA 77 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHh--Cccc----------cccCchhHHHHHHHHHHHHHHCCC----------CHHHHH
Confidence 344556778888887644432221 1110 111367789999999999999995 566899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHccc--HHHHHHHHHHHhccCCCCHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL-FKASK--YKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~ 528 (713)
.+|.+|...|++++|+..|+++++++|+++..+. .+|.++ ...|+ +++|...++++++.+|+++.
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~------------~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQLRGENAELYA------------ALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 9999999999999999999999999999999998 688875 67777 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
+++++|.++...|++++|+.++++++++.|.+.
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999988754
|
|
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=109.96 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=78.5
Q ss_pred hHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+|.+.+...+..++.|++ |++|+.+.|.|++++++|++ +.|++||+|+.+.++..|+|+++|||++|++|+.++
T Consensus 18 ~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 18 ATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred ccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEE
Confidence 4666677777888888887 99999999999999999976 679999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHH
Q 005125 695 EIPGH-QCELLEK 706 (713)
Q Consensus 695 ~~~g~-~~~~~~~ 706 (713)
++.|. +.+++..
T Consensus 98 ~~~G~~~~~e~~~ 110 (111)
T cd02965 98 VLAGIRDWDEYVA 110 (111)
T ss_pred EEeCccCHHHHhh
Confidence 99999 7777753
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=111.73 Aligned_cols=100 Identities=27% Similarity=0.415 Sum_probs=87.4
Q ss_pred cccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
+|| .+..+.+.++|...+...+.+++.|++ |++|+.+.|.++++++.+|++.|++||++..+.++..++|.++||++
T Consensus 2 ~~g-~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 2 GHG-KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCC-CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 455 455667778999999888888989998 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCC---------CHHHHHHHH
Q 005125 686 IYKNGSRVKEIPGH---------QCELLEKSV 708 (713)
Q Consensus 686 ~~~~g~~~~~~~g~---------~~~~~~~~~ 708 (713)
+|++|+.++++.|. +.+.|+.||
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999999887655 456666665
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=135.52 Aligned_cols=225 Identities=15% Similarity=0.066 Sum_probs=177.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|.....-..+|..+...|-..+|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334445667777778888888888877773 5566677788888888888777777777 5556677777777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+....--|++|.+..+.... .+...+|.....
T Consensus 466 v~~d~s~yEkawElsn~~sa------------------------------------------------rA~r~~~~~~~~ 497 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA------------------------------------------------RAQRSLALLILS 497 (777)
T ss_pred hccChHHHHHHHHHhhhhhH------------------------------------------------HHHHhhcccccc
Confidence 66555445555544443322 344445666667
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 495 (713)
.++|+++..+++..++++|- ....|+.+|.+..+.++++.|.++|..++.++|++.++|+
T Consensus 498 ~~~fs~~~~hle~sl~~npl----------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn---------- 557 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPL----------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN---------- 557 (777)
T ss_pred chhHHHHHHHHHHHhhcCcc----------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh----------
Confidence 88999999999999998884 4557888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 496 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
|++.+|.+.++-.+|...+.+|++.+-++..+|.|.-.+....|.+++|+..|.+.+.+.-.
T Consensus 558 --Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 558 --NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred --hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 79999999999999999999999999888999999999999999999999999998876433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-10 Score=111.85 Aligned_cols=282 Identities=16% Similarity=0.133 Sum_probs=181.1
Q ss_pred hhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 247 FPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 247 a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
|.....+ ..+...-.+..-+.+..+.|+++.|-.++.++-+..+++ ......++.++...|+++.|..-..++++.
T Consensus 103 AEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 103 AEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred HHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 4444444 233333455555566677788888888877777774433 345666777777778888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHcCCC
Q 005125 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK--HLTKCNEARELKRWNDLLKETQNVISFGAD 400 (713)
Q Consensus 323 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 400 (713)
.|.++.++.....+|...|++.+......+..+ ..--+......+.. +..........+..+.-....+ .+...-.
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~-~~pr~lr 260 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK-NQPRKLR 260 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH-hccHHhh
Confidence 888888877777888888888777777666555 22111111111111 1111111111111111111111 1111111
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 401 SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
+.+.+....+.-+..+|++++|.+..+++++..-+ +.....+ -....++...=++..++.++..|++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----------~~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----------PRLCRLI--PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----------hhHHHHH--hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 22356666677888889999999888888775432 2211111 2235677888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+..+. .+|.++++.+.|.+|..+|+.|++..| ....+..+|.++.++|+..+|.+.++.++.+
T Consensus 328 p~L~~------------tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLS------------TLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHH------------HHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 87766 689999999999999999999998887 5677888899999999999999998888754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=137.06 Aligned_cols=152 Identities=11% Similarity=-0.033 Sum_probs=136.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 391 TQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 391 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
........|++ +.++.++|.+....|.+++|+.+++.++++.|++ ..++.+++.++.+.+++++|+..+
T Consensus 75 ~~~~~~~~~~~-~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----------~~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 75 LLDYVRRYPHT-ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----------SEAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----------HHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334445555 4899999999999999999999999999999964 558889999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 471 ~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
++++..+|++...+. .+|.++.+.|++++|+.+|++++..+|+++.++..+|.++..+|+.++|...|
T Consensus 144 ~~~l~~~p~~~~~~~------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 144 ELYFSGGSSSAREIL------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHhhcCCCCHHHHH------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHH
Q 005125 551 TAALIVMPSYSKARL 565 (713)
Q Consensus 551 ~~al~~~p~~~~a~~ 565 (713)
++|++...+-...+.
T Consensus 212 ~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 212 QAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHhhCcchHHHH
Confidence 999998877665543
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-13 Score=110.27 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=83.2
Q ss_pred chhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH---hhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP---YIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~---~~~~~~~v~~~Pt~~~~~~g 690 (713)
+.++|...+.. .+.+++.|++ |++|+.+.|.|+++++.++.+.|+.||.|+.+ .++..++|.++|||+||++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 34677777754 4567777998 99999999999999999988999999999874 79999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.++++.|.++++|.+.|..+
T Consensus 82 ~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 82 EKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred eEEEEEeCCCHHHHHHHHHhc
Confidence 999999999999999988765
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-10 Score=114.87 Aligned_cols=288 Identities=17% Similarity=0.121 Sum_probs=187.3
Q ss_pred hhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 247 FPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 247 a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
|.+...+ ..|++..++...-.++.+.++|++|+...+.-....-. ....+..|.|.++++..++|+..++ .++
T Consensus 31 a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~ 106 (652)
T KOG2376|consen 31 AVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLD 106 (652)
T ss_pred HHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---ccc
Confidence 4444444 56888888888888888888888888444332221111 1222678888888888888888888 456
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHcCCCCh
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE-TQNVISFGADSA 402 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~ 402 (713)
+.+.......|.+++++|+|++|+..|+..++ -+.++.+..... .++..+ .++.. ..+.....|++.
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~-nl~a~~----------a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRA-NLLAVA----------AALQVQLLQSVPEVPEDS 174 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHH-HHHHHH----------HhhhHHHHHhccCCCcch
Confidence 66667788888888888888888888888877 444432211110 000000 01111 334444556666
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH------hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT------KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
-+.+++.+-++...|+|.+|++.+++++.++..... .-+ ...-..+...++.++..+|+.++|...|...+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei-e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI-EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 688899999999999999999999999544322110 000 0123457788999999999999999999999998
Q ss_pred CCCCHHHHHHHHH-H------------------------------------HHHHHHHHHHHH-----------------
Q 005125 477 DPNNKEVIKGVKM-A------------------------------------KAMASARLRGNL----------------- 502 (713)
Q Consensus 477 ~p~~~~~~~~~~~-~------------------------------------~~~~~~~~lg~~----------------- 502 (713)
+|.+......... + +.-..+.+.+.+
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 8776533221100 0 001111122222
Q ss_pred -----------------HHHcccHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 503 -----------------LFKASKYKEACYAYSEGLEHEAYN-SVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 503 -----------------~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
..+...+.+|++.+....+.+|.. ..+.+.++.+...+|+++.|++.+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 122224666777777777778877 6678888999999999999999998
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-12 Score=120.21 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=102.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL-IGLGR--QIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.+|++++.|+.+|..|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|+..++++++.+|++..++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 56778889999999999999999999999999999999999999999975 67787 5999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+.+|.++...|++++|+.+|+++++ +.|.+...
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~-l~~~~~~r 180 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLD-LNSPRVNR 180 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCccH
Confidence 9999999999999999999999999 77776543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-13 Score=124.40 Aligned_cols=107 Identities=42% Similarity=0.595 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------- 565 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------- 565 (713)
+..++.-|+-+++.++|.+|+..|.+||+++|.++..|+++|.+|.++|.++.|++.++.|+.+||.+..+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4556689999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 566 -----EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 566 -----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
++|++.|+++|+++|+|+..+..|..+...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999998888776653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-11 Score=134.23 Aligned_cols=220 Identities=14% Similarity=0.062 Sum_probs=181.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
..+|.+..++..+...+...+++++|+..++.+++..|+....|+.+|.++...+++.+|.-. .++. .-+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-~~~~~----- 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID-SFSQN----- 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-hcccc-----
Confidence 457899999999999999999999999999999999999999999999999999999988866 6766 44443
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCc
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGG 446 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 446 (713)
.+| .+++++-..+...+.+. .+++.+|.||.++|++++|...|+++++.+|+ +
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k-~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~----------n 149 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENK-LALRTLAEAYAKLNENKKLKGVWERLVKADRD----------N 149 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc----------c
Confidence 244 44444444444455553 68899999999999999999999999999985 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+.++.++|..|... ++++|++++.+|+.. +...++|.++.+++.+.+..+|++
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 77999999999999 999999999999874 334557778888888888887776
Q ss_pred HHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005125 527 SVL--------------------LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568 (713)
Q Consensus 527 ~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A 568 (713)
.+. +.-+=.+|...++|++++..++.+++.+|.+..++.+-|
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 443 333447888999999999999999999999998877433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-09 Score=108.38 Aligned_cols=368 Identities=11% Similarity=-0.004 Sum_probs=248.6
Q ss_pred CCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHH
Q 005125 202 CPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFE 276 (713)
Q Consensus 202 ~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~ 276 (713)
...+...|-..|++||..+ ..+...|+ . .+.+-.... ..|..+..+ +-|.--..|+..-..--..|+..
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWl---k-Yae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWL---K-YAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHH---H-HHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 3344569999999999988 33333232 1 122211111 456666666 56666677887777777889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005125 277 DALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356 (713)
Q Consensus 277 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 356 (713)
-|...|++-++..|+ ..+|......-.+.+..+.|...|++.+-.+|+ ...|...+..-.+.|+..-|...|++|++
T Consensus 159 gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie- 235 (677)
T KOG1915|consen 159 GARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIE- 235 (677)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-
Confidence 999999999988886 457777777777888899999999999888876 67888999999999999999999999998
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH--------------------------------------------HH
Q 005125 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE--------------------------------------------TQ 392 (713)
Q Consensus 357 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------------------------------------------~~ 392 (713)
.-.++...... +..-+.--.....++.|... |+
T Consensus 236 ~~~~d~~~e~l---fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 236 FLGDDEEAEIL---FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 43333211111 11111111112222233222 44
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 005125 393 NVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV-YIAAGRFEDAVKTAQ 471 (713)
Q Consensus 393 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~ 471 (713)
..+..+|-+. +.|+..-.+....|+.+.-.+.|++|+...|......+- ..-.++|.+.+.. -....+.+.+.+.|+
T Consensus 313 ~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W-~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW-RRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455566555 666666677777899999999999998877654332110 0123334333322 234678888899999
Q ss_pred HHHHhCCCCH----HHHHHHHHH----------HH-----------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 472 DAAQIDPNNK----EVIKGVKMA----------KA-----------MASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 472 ~al~~~p~~~----~~~~~~~~~----------~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.+|++-|... ..|.+++.. ++ .........+-.++++++.....|++-|+..|.+
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 9998887643 334333221 00 1111223344567889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH--------------HHHHHHHHHHHHhCCCCH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL--------------EAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------------~~A~~~~~~al~~~p~~~ 583 (713)
..+|...|.+-..+|+.+.|...|+-|+....-+..-.+ +.|...|++.|+..++..
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999999876433332222 889999999999988776
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-12 Score=109.63 Aligned_cols=102 Identities=14% Similarity=0.017 Sum_probs=99.5
Q ss_pred cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LN-KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
+. +++-+.++.+|..++..|++++|...|+-+..++|.+...|++||.++..+|+|.+|+..|.+++.++|+++.++++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 55 77888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+|.|++..|+.+.|.+.|+.++.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=113.91 Aligned_cols=175 Identities=18% Similarity=0.121 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 357 (713)
+...+-+....+|++..+ .+++..+...|+-+.+..+..+++..+|.+...+..+|......|++..|+..++++.. +
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-L 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-c
Confidence 444444445555555555 55555555555555555555555555555555555555555556666666666655555 5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH
Q 005125 358 NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 358 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
.|++. .+|..+|.+|.+.|++++|...|.+++++.+.
T Consensus 130 ~p~d~-----------------------------------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-- 166 (257)
T COG5010 130 APTDW-----------------------------------------EAWNLLGAALDQLGRFDEARRAYRQALELAPN-- 166 (257)
T ss_pred CCCCh-----------------------------------------hhhhHHHHHHHHccChhHHHHHHHHHHHhccC--
Confidence 55542 45555555555555555555555555555553
Q ss_pred HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 438 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
++.+..++|..|.-.|+++.|..++..+....+.+..+.. +++.+...+|++++|...-.
T Consensus 167 --------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~------------NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 167 --------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ------------NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred --------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH------------HHHHHHhhcCChHHHHhhcc
Confidence 3445555566666666666666666655555554544444 45555556666665555433
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=109.44 Aligned_cols=93 Identities=12% Similarity=0.263 Sum_probs=80.9
Q ss_pred chhHHHHHhhcCC-ceEEEeec--Cch--hH--HHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 618 SNERFRHFVTSPG-MAVVLFCS--KAE--HK--QVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 618 ~~~~~~~~l~~~~-~~vv~f~~--cg~--c~--~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+|...+.... ..|+.|++ ||+ |+ ++.|.+.++++.+ .++.|++||+|+.+.++.+++|+++||+++|
T Consensus 15 t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lf 94 (120)
T cd03065 15 NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVF 94 (120)
T ss_pred ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEE
Confidence 4578998776665 45555666 776 99 8999999999886 4699999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|+.++ +.|. +.+.|.+||++.
T Consensus 95 k~G~~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 95 KDDEVIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred ECCEEEE-eeCCCCHHHHHHHHHHH
Confidence 9999988 9999 999999999875
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=112.71 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 005125 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLL 388 (713)
Q Consensus 309 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 388 (713)
...+...+-+....+|++..+ ..++..+...|+-+.++.+..++.. ..|.+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~-------------------------- 100 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI-AYPKDR-------------------------- 100 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc-cCcccH--------------------------
Confidence 334666666777788988888 8899999999998888888888766 566552
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHH
Q 005125 389 KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468 (713)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 468 (713)
.+...+|...+..|+|.+|+..++++..+.|+ +..+|..+|.+|.+.|++++|..
T Consensus 101 ---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~----------d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 101 ---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT----------DWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred ---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC----------ChhhhhHHHHHHHHccChhHHHH
Confidence 45555799999999999999999999999995 66789999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 469 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 548 (713)
.|.+++++.|+++.+.. |+|..++-.|+++.|..++..+....+.+..+..||+.+....|++++|..
T Consensus 156 ay~qAl~L~~~~p~~~n------------Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 156 AYRQALELAPNEPSIAN------------NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHhccCCchhhh------------hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999988 899999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 005125 549 DCTAA 553 (713)
Q Consensus 549 ~~~~a 553 (713)
...+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 76543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.9e-13 Score=124.08 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=84.9
Q ss_pred chhHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+. ...+++|+||+ |++|+++.|.++++...| +.+.+++||+|..|.++..|||.++||+..|++|+
T Consensus 29 T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGq 108 (304)
T COG3118 29 TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQ 108 (304)
T ss_pred hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCc
Confidence 4556766542 24588999999 999999999999999998 67999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.|+.+.|. +.+.|++||+++.
T Consensus 109 pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 109 PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred CccccCCCCcHHHHHHHHHHhc
Confidence 99999999 7779999999874
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=106.74 Aligned_cols=94 Identities=23% Similarity=0.371 Sum_probs=85.1
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+.+.++|...+...+.+++.|++ |++|+.+.|.|+.+...++ .+.|+.+|.| .+.++..++|.++|||++|++|+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 45677888888777888888999 9999999999999998885 3789999999 78899999999999999999999
Q ss_pred EeeeecCCCHHHHHHHHHh
Q 005125 692 RVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 692 ~~~~~~g~~~~~~~~~~~~ 710 (713)
.++++.|.+++.|.++|++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EEEEEecCChHHHHHHHhh
Confidence 9999999999999999986
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-09 Score=105.19 Aligned_cols=205 Identities=11% Similarity=0.028 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...|...|..-..++++..|...|++||..+..+...|...+.+-++......|...+.+|+.+-|.--..|+..-.+-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34577777777788888888888888888887778888888888888888888888888888888877777777777777
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
.+|+...|.+.|++-+. ..|+. .++..-...-..-..++.|...|++.+-..|+- ..|...+..-.+.|+
T Consensus 153 ~LgNi~gaRqiferW~~-w~P~e-------qaW~sfI~fElRykeieraR~IYerfV~~HP~v--~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME-WEPDE-------QAWLSFIKFELRYKEIERARSIYERFVLVHPKV--SNWIKYARFEEKHGN 222 (677)
T ss_pred HhcccHHHHHHHHHHHc-CCCcH-------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH--HHHHHHHHHHHhcCc
Confidence 78888888888888887 77765 334444444445556666666666666655553 455555666666666
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
..-|...|++|+....++.. ...++...|..-..++.++.|...|+-||..-|.+
T Consensus 223 ~~~aR~VyerAie~~~~d~~-------~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEE-------AEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 66666666666554333221 12233334444444555555555555555544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-10 Score=134.82 Aligned_cols=286 Identities=16% Similarity=0.098 Sum_probs=195.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSS---------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY- 326 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 326 (713)
.++......+..++..|++++|..++.++.+..+. .......++.++...|++++|..++++++...+..
T Consensus 407 ~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (903)
T PRK04841 407 ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW 486 (903)
T ss_pred cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 34556677888889999999999999998765321 13455667888999999999999999999864442
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC--
Q 005125 327 ----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-- 400 (713)
Q Consensus 327 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 400 (713)
..++..+|.++...|++++|...+.+++. ..................+..+...|++++|...+++++.....
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~-~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQ-MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 24567889999999999999999999998 54433222333445677888899999999999999998876221
Q ss_pred ---C--hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 401 ---S--APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 401 ---~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
. ...++..+|.++...|++++|...+.+++........ ......+..+|.++...|++++|...+.++..
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-----QQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1234567789999999999999999999876442111 01345677789999999999999999999987
Q ss_pred hCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 005125 476 IDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS----VLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 476 ~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~ 548 (713)
+..... ....... ......+...|+.+.|..++.......+... ..+..++.++...|++++|..
T Consensus 641 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 641 LLGNGRYHSDWIANAD--------KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHhcccccHhHhhHHH--------HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 643321 1111000 0012233345566666666555443222111 113455666666666666666
Q ss_pred HHHHHHHh
Q 005125 549 DCTAALIV 556 (713)
Q Consensus 549 ~~~~al~~ 556 (713)
.+++++..
T Consensus 713 ~l~~al~~ 720 (903)
T PRK04841 713 ILEELNEN 720 (903)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=133.54 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=97.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 286 IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 286 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
....|.+++++.+||.+....|++++|+..++.++++.|++..++..++.++.+++++++|+..+++++. .+|++.
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p~~~--- 154 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGSSSA--- 154 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCCCCH---
Confidence 3446777777777777777777777777777777777777777777777777777777777777777777 777663
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
..++.+|.++..+|++++|+.+|++++...|+
T Consensus 155 --------------------------------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------- 186 (694)
T PRK15179 155 --------------------------------------REILLEAKSWDEIGQSEQADACFERLSRQHPE---------- 186 (694)
T ss_pred --------------------------------------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC----------
Confidence 55555566666666666666666666654442
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
.+.++..+|.++...|+.++|...|+++++...+-.
T Consensus 187 ~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 187 FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 344556666666666666666666666666544433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=109.37 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=109.1
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
+.|++++...|+ +..+.+.+|..+...|++++|+..|++++..+|.++.++. .+|.++
T Consensus 4 ~~~~~~l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------~la~~~ 61 (135)
T TIGR02552 4 ATLKDLLGLDSE----------QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWL------------GLAACC 61 (135)
T ss_pred hhHHHHHcCChh----------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHH
Confidence 356778888885 3457888999999999999999999999999999999887 699999
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
...|++++|+..|++++..+|+++..++.+|.++...|++++|+..++++++++|++....
T Consensus 62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999999999999999999999999999999999886643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=108.91 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=82.9
Q ss_pred eeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEE-EE
Q 005125 614 VFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFK-IY 687 (713)
Q Consensus 614 ~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~-~~ 687 (713)
..+.+..+|.+.+. ..+.+++.|++ ||+|+.+.|.|+++++++++ +.|++||+|+.++++..++|.+.|+++ ||
T Consensus 6 ~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred hhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEE
Confidence 34466778888775 35567777999 99999999999999999977 788999999999999999999776555 99
Q ss_pred ECCe-EeeeecC--------C-CHHHHHHHHHhh
Q 005125 688 KNGS-RVKEIPG--------H-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~-~~~~~~g--------~-~~~~~~~~~~~~ 711 (713)
++|+ .+++..| . +.++|.+.|+.+
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 9999 9999999 4 788888888764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-10 Score=102.83 Aligned_cols=171 Identities=17% Similarity=0.081 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
-..+.+....++...|..++++.....|.+. .+-...|..+...|.+++|+++|+..++-+|.+ ..++-
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----------~v~~K 124 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD----------TVIRK 124 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhhHHHHHHHHhccCcch----------hHHHH
Confidence 3345556677888889999988888888775 777778999999999999999999999888753 33555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
..-.+...+|+.-+|++.+..-++..+.+.++|. .++.+|+..|+|++|.-||++.+-+.|.++..+.
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~------------eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH------------ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH------------HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 5666777788888999999999999999999998 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHH
Q 005125 532 NRAACRSKLGQ---YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 532 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|.+++-+|. ++-|.++|.++++++|.+..+++
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 99998887774 66788888888888887777776
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-12 Score=105.30 Aligned_cols=94 Identities=28% Similarity=0.489 Sum_probs=87.3
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.+.|...+.. ....++.|++ |++|+.+.|.++++++.++ ++.|+.||.++.+.++..++|..+||+++|++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 45688888877 7788888888 9999999999999999997 899999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
.++.|. +.+.|.+||+++
T Consensus 85 ~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcC
Confidence 999999 999999999875
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-10 Score=106.35 Aligned_cols=272 Identities=14% Similarity=0.097 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR------------- 328 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------------- 328 (713)
-.-+|.++++.|+|++|+..|.-+.+.+.-+++.+.++|.|++.+|.|.+|.....++ |+.+-
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 4557889999999999999999998877777889999999999999999998876665 22222
Q ss_pred -----------------HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 005125 329 -----------------AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391 (713)
Q Consensus 329 -----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 391 (713)
-...||.+++..-.|++|++.|.+.+. -+|+. +......+..+.++.-++-+.+.+
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~-dn~ey------~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ-DNPEY------IALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cChhh------hhhHHHHHHHHHhcchhhhHHHHH
Confidence 233444555555556666666666665 44443 233344555566666666666666
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHc--cCH----------------HHHHHHhhc----------cccCChhhHHhhhcc
Q 005125 392 QNVISFGADSAPQVYALQAEALLRL--QRH----------------QEAHDSYNK----------SPKFCLEYYTKLFGL 443 (713)
Q Consensus 392 ~~al~~~p~~~~~~~~~la~~~~~~--g~~----------------~~A~~~~~~----------al~~~~~~~~~~~~~ 443 (713)
.-.++..|++. .+.+.++-.++++ |+. ..+...++. |++.-|...
T Consensus 209 ~vYL~q~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~------ 281 (557)
T KOG3785|consen 209 KVYLRQFPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM------ 281 (557)
T ss_pred HHHHHhCCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH------
Confidence 66666666654 4444444444332 111 111111111 112222111
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------H--------------
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK-----------------A-------------- 492 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----------------~-------------- 492 (713)
...+++..++...|..+++.++|+...+ .++|..+.-+.+.+.+. .
T Consensus 282 ~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 282 KHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 1246788889999999999999988776 46777765544321110 0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
+.-.-.++..++-..+|++-+.++...-..--++-...+|+|.++...|++.+|.+.|-+.-
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 00011344455555566666665555555555555666677777777777777777665543
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-12 Score=113.83 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=86.6
Q ss_pred ccccccceeecchhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||.. ..+.....|...+...+ .+|+.|++ |++|+.+.|.|+.++..||.+.|++||++.. .++..++|.++
T Consensus 59 ~~~g~v-~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 59 RRFGKV-YELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCCCeE-EEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCC
Confidence 456754 55666678888876543 67777888 9999999999999999999999999999987 89999999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
|||++|++|+.++++.|. +.+.|+.+|.++
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999999998766 456777777654
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-11 Score=124.09 Aligned_cols=205 Identities=20% Similarity=0.171 Sum_probs=157.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Q 005125 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375 (713)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 375 (713)
-..++.++..+|-...|+..|++. ..|.....||...|+..+|.....+-++ .+|+
T Consensus 401 q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d--------------- 456 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPD--------------- 456 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc---------------
Confidence 344555555555555555555552 3455555555555555555555554444 3332
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHH
Q 005125 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 376 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~ 455 (713)
+.+|..+|++....--|++|.++.+.. ++.+...+|.
T Consensus 457 ---------------------------~~lyc~LGDv~~d~s~yEkawElsn~~----------------sarA~r~~~~ 493 (777)
T KOG1128|consen 457 ---------------------------PRLYCLLGDVLHDPSLYEKAWELSNYI----------------SARAQRSLAL 493 (777)
T ss_pred ---------------------------chhHHHhhhhccChHHHHHHHHHhhhh----------------hHHHHHhhcc
Confidence 367777777777666666666665543 3445666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
.....++|+++.++++..++++|-....|+ .+|.+..+.+++..|..+|..++.++|++..+|.|++.
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf------------~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPLQLGTWF------------GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLST 561 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCccchhHHH------------hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhH
Confidence 777889999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhC
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREI 579 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~ 579 (713)
.|.++|+..+|...+++|++.+-++...|- ++|++.|.+.+.+.
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999977766554 89999999988764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=106.64 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=103.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.+....+.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|+++..++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 56677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|...|++++|+..|+++++ ++|++.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~-~~p~~~ 119 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE-ICGENP 119 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hccccc
Confidence 9999999999999999999999 999875
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-10 Score=103.47 Aligned_cols=205 Identities=19% Similarity=0.150 Sum_probs=145.1
Q ss_pred cCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 273 ARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 273 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 346 (713)
.+.++-++++...+.. .++.-..+-....+....|+.+-|..++.+.....|.+..+-...|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3455555555555543 2333445566677777888888898888888887888888888888888888999999
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHh
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSY 426 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 426 (713)
+++|+..++ -+|.+. .++-..-.+...+|+.-+|++.+
T Consensus 106 ~e~y~~lL~-ddpt~~-----------------------------------------v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 106 IEYYESLLE-DDPTDT-----------------------------------------VIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred HHHHHHHhc-cCcchh-----------------------------------------HHHHHHHHHHHHcCCcHHHHHHH
Confidence 998888888 777773 23333344445566666666666
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 506 (713)
..-++..+. +.++|..++.+|...|+|++|.-+|++.+-+.|.++..+. .+|.+++-+
T Consensus 144 n~YL~~F~~----------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~------------rlae~~Yt~ 201 (289)
T KOG3060|consen 144 NEYLDKFMN----------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ------------RLAEVLYTQ 201 (289)
T ss_pred HHHHHHhcC----------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH------------HHHHHHHHH
Confidence 666655553 4557777888888888888888888888888888776665 466666655
Q ss_pred c---cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005125 507 S---KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541 (713)
Q Consensus 507 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 541 (713)
| ++.-|.++|.++++++|.+...++.+-.|...+-
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 4 5667888888888888877777776665554433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-10 Score=117.33 Aligned_cols=252 Identities=17% Similarity=0.092 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
..+++.....++...|++++|++++++....-.+....+-..|.++..+|++++|...|...+. .+|++..-...+...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHH
Confidence 3567788899999999999999999999888888899999999999999999999999999999 999986433333222
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-------------------------------hHHHHHHHHHHHHHccCHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADS-------------------------------APQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------------------------~~~~~~~la~~~~~~g~~~ 420 (713)
...-. -......+.....|+......|.. .|.++..+-.+|....+.+
T Consensus 82 ~g~~~-~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 82 LGLQL-QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred Hhhhc-ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 21111 001113344445555444444432 1233333333333222221
Q ss_pred HHHHHhhc---cccCChhhHH----hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 421 EAHDSYNK---SPKFCLEYYT----KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 421 ~A~~~~~~---al~~~~~~~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
-....+.. .+........ ..-.+.....+++.++..|...|++++|+++.++||...|..++.+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~-------- 232 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYM-------- 232 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH--------
Confidence 11111111 1111100000 00001112457788999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
..|.++-..|++.+|.++++.|-.+++.+-.+-...+..+++.|+.++|...+......+
T Consensus 233 ----~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 233 ----TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ----HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 599999999999999999999999999988888889999999999999999998876655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=101.08 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=72.5
Q ss_pred hHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..|...+. ..+.+|+.|++ ||+|+.+.|+|++++.++++ +.|++||+|+.+++++.++|.++|||+||++|+-+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 35555554 35566667888 99999999999999999988 999999999999999999999999999999987653
Q ss_pred ---------eecCC--CHHHHHHHHH
Q 005125 695 ---------EIPGH--QCELLEKSVK 709 (713)
Q Consensus 695 ---------~~~g~--~~~~~~~~~~ 709 (713)
.+.+. +.+++.+.|+
T Consensus 83 ~d~gt~~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 83 VDYGSPDHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred EecCCCCCcEEEEEcCchhHHHHHHH
Confidence 23333 4566666554
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-11 Score=103.30 Aligned_cols=102 Identities=16% Similarity=0.067 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
..+.++.+|..++..|++++|...|+-+..++|.+...|. ++|.++..+|+|++|+.+|.+|+.++|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~------------gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWF------------RLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3457888999999999999999999999999999999998 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++..++++|.|++.+|+.+.|.+.|+.++....+
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-10 Score=132.06 Aligned_cols=291 Identities=14% Similarity=-0.019 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HR 328 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 328 (713)
.....+|..+...|++++|..+++++++..+.. ..++..+|.++...|++++|...+++++...... ..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 455667888899999999999999999865542 2356788999999999999999999999764321 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC----CCh
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA--KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA----DSA 402 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~ 402 (713)
++..+|.++...|++++|..++++++. +...... ...........+..+...|++++|...+.+++.... ...
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQ-LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 667889999999999999999999988 4322110 011112244567788889999999999999887532 223
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
...+..+|.++...|++++|...+.++..+........ .............+...|+.+.|..++.......+....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS---DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH---hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 45667789999999999999999999866433211000 000111111234556689999999998776543322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
.. ...+..++.++...|++++|+..+++++.... ....++..+|.++...|+.++|...+.+|+++
T Consensus 689 ~~--------~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 689 FL--------QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred hH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 01123689999999999999999999987632 23567889999999999999999999999998
Q ss_pred CCCChH
Q 005125 557 MPSYSK 562 (713)
Q Consensus 557 ~p~~~~ 562 (713)
.....-
T Consensus 761 a~~~g~ 766 (903)
T PRK04841 761 ANRTGF 766 (903)
T ss_pred hCccch
Confidence 765443
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=103.84 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=74.8
Q ss_pred eeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 614 VFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
..+.. .+|...+... ..+++.|++ |++|+.+.|.+++++..++++.|++||+++. .+++.++|.++||+++|+
T Consensus 7 ~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~ 84 (113)
T cd02957 7 REISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYK 84 (113)
T ss_pred EEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEE
Confidence 44544 7888877655 677778998 9999999999999999999999999999999 999999999999999999
Q ss_pred CCeEeeeecCC
Q 005125 689 NGSRVKEIPGH 699 (713)
Q Consensus 689 ~g~~~~~~~g~ 699 (713)
+|+.++++.|.
T Consensus 85 ~G~~v~~~~G~ 95 (113)
T cd02957 85 NGELIDNIVGF 95 (113)
T ss_pred CCEEEEEEecH
Confidence 99999999874
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.31 E-value=7e-11 Score=117.46 Aligned_cols=272 Identities=16% Similarity=0.152 Sum_probs=189.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
+.++-.|+|..++..++ ....++. .......+.+++..+|+++..+...... .+....+...++..+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 45677899999998777 2233332 3456778899999999988777655432 23335666777777766567777
Q ss_pred HHHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH
Q 005125 346 AVSHYKKSSSLANQ-KDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424 (713)
Q Consensus 346 A~~~~~~al~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 424 (713)
++..++..+....+ .+. ...+..+.++...|++++|+..+.+. .+ .+.......+|+.+++++.|.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~------~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~-lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 85 ALEELKELLADQAGESNE------IVQLLAATILFHEGDYEEALKLLHKG-----GS-LELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHHHHHHCCCTS---CHH------HHHHHHHHHHCCCCHHHHHHCCCTTT-----TC-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhccccccH------HHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc-ccHHHHHHHHHHHcCCHHHHHH
Confidence 77777665541111 121 23445556666788999888877654 22 3677777899999999999999
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG--RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
.++.+.+.+.+. .-+....+++....| ++.+|.-.|++.....+..+..++ .++.+
T Consensus 153 ~l~~~~~~~eD~----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln------------g~A~~ 210 (290)
T PF04733_consen 153 ELKNMQQIDEDS----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN------------GLAVC 210 (290)
T ss_dssp HHHHHHCCSCCH----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH------------HHHHH
T ss_pred HHHHHHhcCCcH----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH------------HHHHH
Confidence 999988776643 223333444555555 589999999998777677776665 58999
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY-EKAVEDCTAALIVMPSYSKARL-EAAIQDYEMLI 576 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~-~~A~~~~~~al 576 (713)
+..+|+|++|.+.+.+++..+|.+++++.|++.+...+|+. +.+.+++.+....+|+++...- .+....|.++.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 6677788888888998876544 55555666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=100.44 Aligned_cols=90 Identities=32% Similarity=0.579 Sum_probs=81.3
Q ss_pred hHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHh-CCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKR-FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~-~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
++|...+... ..+++.|++ |++|+.+.|.++++.+. ++.+.++.+|.+..+.++..++|.++||+++|.+|+.+.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 4677776665 677777888 99999999999999988 678999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHH
Q 005125 695 EIPGHQCELLEKSVK 709 (713)
Q Consensus 695 ~~~g~~~~~~~~~~~ 709 (713)
++.|.+++.|.++|+
T Consensus 83 ~~~g~~~~~l~~~~~ 97 (97)
T cd02984 83 RVSGADPKELAKKVE 97 (97)
T ss_pred EEeCCCHHHHHHhhC
Confidence 999999999998874
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-09 Score=100.92 Aligned_cols=287 Identities=16% Similarity=0.072 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-HRAHHRLAMLY 337 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 337 (713)
+.....-|..-+..|+|.+|.....++-+..+....++..-+.+..++|+++.|-.++.++-+..++. ..+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 34455667777788999999999999888888878888888899999999999999999999985443 56788899999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH----
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL---- 413 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~---- 413 (713)
...|++..|..-..++++ ..|.++ .........|...|+|...+..+.+.-+..--+.+++--.--.++
T Consensus 164 l~~~d~~aA~~~v~~ll~-~~pr~~------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 164 LNRRDYPAARENVDQLLE-MTPRHP------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HhCCCchhHHHHHHHHHH-hCcCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999 999886 455566778889999999998888877665433322211111111
Q ss_pred HHccCHHHH---HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 414 LRLQRHQEA---HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 414 ~~~g~~~~A---~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
....+-..+ ..+.+... ... ..++.+...++.-+...|+.++|.+..+++++..-+.. ..
T Consensus 237 ~q~~~~~~~~gL~~~W~~~p----r~l------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~------ 299 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQP----RKL------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC------ 299 (400)
T ss_pred HHHhccccchHHHHHHHhcc----HHh------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH------
Confidence 111111111 12222221 111 13466778889999999999999999999998765544 21
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----- 565 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----- 565 (713)
.-.-...-++...=++..++.++.+|+++..+..||.++.+.+.|.+|..+|+.|++..|+......
T Consensus 300 --------~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 300 --------RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred --------HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 1122346788999999999999999999999999999999999999999999999999998654332
Q ss_pred ------HHHHHHHHHHHH
Q 005125 566 ------EAAIQDYEMLIR 577 (713)
Q Consensus 566 ------~~A~~~~~~al~ 577 (713)
.+|.+.++.++.
T Consensus 372 ~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 372 DQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 566666666653
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=99.42 Aligned_cols=94 Identities=28% Similarity=0.520 Sum_probs=85.1
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+.+.+.|...+......++.|++ |++|+.+.+.++++.+.++++.|+.+|.+..+.++..++|.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 34566677888888777888888999 9999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHH
Q 005125 691 SRVKEIPGHQCELLEK 706 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~ 706 (713)
+.++++.|.+++.|.+
T Consensus 82 ~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 82 SVVDTLLGANDEALKQ 97 (98)
T ss_pred eEEEEEeCCCHHHhhc
Confidence 9999999998888764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-12 Score=119.93 Aligned_cols=232 Identities=14% Similarity=0.095 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
+...|+.|+++|.|++||.||.+++..+|.++..+.++|.+|+++.+|..|...|..|+.++..+..+|.+.|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH---HHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE---ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
...+|.+.++.++. +.|+.......+......-+. .....-+-.|.+...++|. .-..|..+...|.
T Consensus 180 ~~~EAKkD~E~vL~-LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~---------~K~~G~~Fsk~~~ 249 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA-LEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILP---------IKKPGYKFSKKAM 249 (536)
T ss_pred hHHHHHHhHHHHHh-hCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhcc---------ccCcchhhhhhhc
Confidence 99999999999999 999975433322221110000 0000001111111111110 0112555566666
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
++.++.+|-+-+....+... +-.+ +..|.+..++++|+....+++..+|....... .
T Consensus 250 ~~~~i~~~~~~~A~~~~~~~----------L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s------------~ 306 (536)
T KOG4648|consen 250 RSVPVVDVVSPRATIDDSNQ----------LRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS------------G 306 (536)
T ss_pred cccceeEeeccccccCcccc----------Cccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC------------C
Confidence 66666666655443322111 1111 45556666666666666666665555443333 2
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.|.+---.|...++...++.++.+.|.+
T Consensus 307 ~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 307 PPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred CchhHHHHhhhhhcCcchhheeeecccc
Confidence 4444444555666666666666666644
|
|
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=104.83 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=85.7
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+.....+++.|++ |++|+.+.|.|+++...+ +.+.|+.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 456788887777788888999 999999999999999876 46899999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
.+.|. +.+.|.+||+++
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 99999 899999999875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-09 Score=103.40 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=160.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKA-TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 346 (713)
.+....||..|+.+++-.+..+.... ..-..+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+||.|++.+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 35567899999999998887655433 45566899999999999999999999887777789999999999999999999
Q ss_pred HHHHHHHhhhhccc-------------cH--------HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 347 VSHYKKSSSLANQK-------------DI--------AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 347 ~~~~~~al~~~~p~-------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
...-.++-+ .|- +. ...+.....+.++.+......|++|++.|++.+.-+|+.. .+
T Consensus 111 ~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~-al 187 (557)
T KOG3785|consen 111 KSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI-AL 187 (557)
T ss_pred HHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh-hh
Confidence 987766644 111 00 0111222334444455555556666666666665555543 33
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-IDPNNKEVI 484 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~ 484 (713)
-..++.||.++.-|+-+.+.+.--+...|+ +..+....+..+++.=.-..|..-...... .+...+..-
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pd----------StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPD----------STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCC----------cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 444556666666665555555555554443 223334444443332221111111111111 011111111
Q ss_pred HHHH-----------------HHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 485 KGVK-----------------MAK--AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEK 545 (713)
Q Consensus 485 ~~~~-----------------~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 545 (713)
.+.+ .+. -.++..++...|.++++..+|+...+ +++|..|.-|...|.++..+|+--.
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1000 000 03344577777888888888887755 4778888888888888888887554
Q ss_pred HHHHHHH
Q 005125 546 AVEDCTA 552 (713)
Q Consensus 546 A~~~~~~ 552 (713)
..+.++.
T Consensus 335 SreHlKi 341 (557)
T KOG3785|consen 335 SREHLKI 341 (557)
T ss_pred cHHHHHH
Confidence 4444443
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-11 Score=110.33 Aligned_cols=87 Identities=20% Similarity=0.391 Sum_probs=78.1
Q ss_pred chhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.+++...+... +..++.|++ |++|+++.++++++++.||.+.|+.||.| ++|.++|||+||++|+.++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 456777777654 777778878 99999999999999999999999999988 8999999999999999999
Q ss_pred eecCCCHHHHHHHHHhhh
Q 005125 695 EIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~~~~~~~~~~~~~~ 712 (713)
++.|+++.+|..+|+++.
T Consensus 77 r~~G~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 77 SLEGCNTSTLVSFIRGWA 94 (204)
T ss_pred eeeCCCHHHHHHHHHHHc
Confidence 999999999999998763
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-11 Score=99.73 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=80.5
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+..+|...+.....+++.|++ |++|+++.|.|+++++.+. .+.|+.||+++.+.++..++|.++||+++|++|+.+.
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE 86 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcc
Confidence 355788877767778888999 9999999999999999984 5789999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHH
Q 005125 695 EIPGH-QCELLEKS 707 (713)
Q Consensus 695 ~~~g~-~~~~~~~~ 707 (713)
++.|. +.+.|.+|
T Consensus 87 ~~~G~~~~~~l~~f 100 (101)
T cd03003 87 KYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCCCHHHHHhh
Confidence 99998 88888765
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=119.41 Aligned_cols=101 Identities=28% Similarity=0.394 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
-+...|..++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..+++++.++|+++.+|+.+|.+|..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|++++|+.+|++++. ++|++.
T Consensus 84 g~~~eA~~~~~~al~-l~P~~~ 104 (356)
T PLN03088 84 EEYQTAKAALEKGAS-LAPGDS 104 (356)
T ss_pred CCHHHHHHHHHHHHH-hCCCCH
Confidence 999999999999999 999985
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=99.88 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=78.4
Q ss_pred hhHHHHH---hhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhH-HHcCCCcccEEEEEECCe
Q 005125 619 NERFRHF---VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIA-KSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~---l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~-~~~~v~~~Pt~~~~~~g~ 691 (713)
...|... +.....+++.|++ |++|+.+.|.++++++.+. .+.|++||++..+.++ ..++|.++||+.+|++|+
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 3456654 4667788888999 9999999999999999885 4899999999999998 589999999999999999
Q ss_pred EeeeecCC-CHHHHHHHH
Q 005125 692 RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~ 708 (713)
....+.|. +.+.|..|+
T Consensus 96 ~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 96 GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cceEEeCCCCHHHHHhhC
Confidence 88899999 899988763
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=109.78 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=123.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|....+++-.+..++..|++++|+..++..+...|+++.++...+.++...++..+|++.+++++.++|+....+.++
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|.+.|++.+|+..++..+. -+|++ +..|..++..|
T Consensus 381 a~all~~g~~~eai~~L~~~~~-~~p~d-----------------------------------------p~~w~~LAqay 418 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF-NDPED-----------------------------------------PNGWDLLAQAY 418 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh-cCCCC-----------------------------------------chHHHHHHHHH
Confidence 7777777777777777777776 66665 48888899999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
..+|+..+|... .+..|...|++++|+..+..+.+...-+...|
T Consensus 419 ~~~g~~~~a~~A---------------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 419 AELGNRAEALLA---------------------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHhCchHHHHHH---------------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 999877665543 47778889999999999999988764444444
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=98.87 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=80.6
Q ss_pred hhHHHHHh-h--cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 619 NERFRHFV-T--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~l-~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
...|...+ . ....+++.|++ |++|+.+.|.++++.+.++ ++.++.||++..+.++..++|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 11 FSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred HHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCE
Confidence 34565433 2 45678888999 9999999999999999884 5899999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHh
Q 005125 692 RVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~ 710 (713)
.+..+.|. +.+.|.++|++
T Consensus 91 ~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 91 VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEecCCCCHHHHHHHHhc
Confidence 99999998 89999999986
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=96.19 Aligned_cols=89 Identities=25% Similarity=0.443 Sum_probs=77.8
Q ss_pred HHHHHhh-c-CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 621 RFRHFVT-S-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 621 ~~~~~l~-~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
.|.+.+. . .+.+++.|++ |++|+.+.|.++++...++ .+.++.||++..+.++..++|.++||+++|.+|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 3455453 3 3467777888 9999999999999998885 47899999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHH
Q 005125 696 IPGH-QCELLEKSVK 709 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~ 709 (713)
+.|. +.+.|.+||+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 9999 8999999874
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-09 Score=101.71 Aligned_cols=185 Identities=11% Similarity=0.014 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY---RSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRA 329 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 329 (713)
..++..++..|..++..|+|++|+..|++++...|....+ .+.+|.+|...+++++|+..+++.++.+|++ +.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3577889999999999999999999999999999988654 5899999999999999999999999999887 568
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 005125 330 HHRLAMLYFRLG---------------E---AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391 (713)
Q Consensus 330 ~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 391 (713)
++.+|.++..++ + ..+|+..|++.++ ..|+.......-.. +..+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-~yP~S~ya~~A~~r-----------------l~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-GYPNSQYTTDATKR-----------------LVFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-HCcCChhHHHHHHH-----------------HHHH
Confidence 899998875554 1 3467888888888 88876422211100 0000
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 392 QNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 392 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
+..+ ..--+.+|..|.+.|.|..|+.-++.++...|+.. ...+++..++..|..+|..++|.....
T Consensus 171 ~~~l-------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~-------~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 171 KDRL-------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ-------ATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0000 12233568889999999999999999988777643 357788999999999999999987665
Q ss_pred H
Q 005125 472 D 472 (713)
Q Consensus 472 ~ 472 (713)
.
T Consensus 237 ~ 237 (243)
T PRK10866 237 I 237 (243)
T ss_pred H
Confidence 4
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-10 Score=110.71 Aligned_cols=250 Identities=22% Similarity=0.189 Sum_probs=172.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
+-++..|+|..++..++ ....++. .......+.++|..+|+++..+...... -.|.. .+....+..+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l-------~av~~la~y~~ 77 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPEL-------QAVRLLAEYLS 77 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCC-------HHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhH-------HHHHHHHHHHh
Confidence 44667899999998777 3333332 3567788899999999998776554332 22332 12222222222
Q ss_pred HhhcHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISFGAD-SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 458 (713)
...+-+.++..++..+..... ..+.+....|.++...|++++|++.+.+.- +.+.......+|.
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~---------------~lE~~al~Vqi~L 142 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG---------------SLELLALAVQILL 142 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT---------------CHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC---------------cccHHHHHHHHHH
Confidence 223455566665554433322 334566667888989999999999998751 3446666788999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS--KYKEACYAYSEGLEHEAYNSVLLCNRAAC 536 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~ 536 (713)
.+++++.|.+.++.+-+.+.+..-... ..+++.+..| ++.+|...|++..+..+..+..+..+|.|
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~~l~qL------------a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDSILTQL------------AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCHHHHHH------------HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcHHHHHH------------HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999999999998887766443332 3445555555 69999999999988888899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 537 RSKLGQYEKAVEDCTAALIVMPSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 537 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
++.+|+|++|...+++++..+|.+++++. +.+.+++.+....+|+++-+...
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999999998776 44667777777788888765433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=95.81 Aligned_cols=93 Identities=17% Similarity=0.340 Sum_probs=82.6
Q ss_pred hHHHHH-hhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 620 ERFRHF-VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 620 ~~~~~~-l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
+.|... +.....+++.|++ |++|+.+.|.++++++.+ +.+.++.+|++..+.++..++|.++||+++|.+|+.+.+
T Consensus 11 ~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 90 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEE
Confidence 466654 4446677888988 999999999999999998 458999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhhh
Q 005125 696 IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~~ 712 (713)
+.|. +.++|..+|+++.
T Consensus 91 ~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 91 KVGALSKGQLKEFLDANL 108 (109)
T ss_pred ecCCCCHHHHHHHHHHhc
Confidence 9999 9999999998764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=100.99 Aligned_cols=217 Identities=18% Similarity=0.063 Sum_probs=150.7
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
+.+..+|.+||+++..-.+..|.+-..+..+|.||+...+|..|..+|++.-.+.|.........|..++..+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998999999999999999998
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhc
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (713)
....... - +.-. ......-+.+....+++..+....++
T Consensus 100 V~~~~~D-~-~~L~----------------------------------------~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 100 VAFLLLD-N-PALH----------------------------------------SRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred HHHHhcC-C-HHHH----------------------------------------HHHHHHHHHHhcccccCcchHHHHHh
Confidence 8876654 1 1110 01112223333344444444444443
Q ss_pred cccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 005125 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK 508 (713)
Q Consensus 429 al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 508 (713)
.... ..+....+.|.+.++.|++++|++-|+.|++...-++..-+ +++.+.++.++
T Consensus 138 lp~e------------n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAY------------niALaHy~~~q 193 (459)
T KOG4340|consen 138 LPSE------------NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAY------------NLALAHYSSRQ 193 (459)
T ss_pred ccCC------------CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHH------------HHHHHHHhhhh
Confidence 3211 23445566677777777777777777777766555544433 56777777777
Q ss_pred HHHHHHHHHHHhcc----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 509 YKEACYAYSEGLEH----EAYN-------------------------SVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 509 ~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
++.|+++..+.++. +|+. .+++...+.++.+.|+++.|.+.+.
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 77777666655542 2211 3445566778888888888877654
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-11 Score=97.04 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=72.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELL 704 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 704 (713)
...+++.|++ |++|+.+.|.|+++++.++++.++.||.+ ..+.++..++|.++||+++|++| .+.++.|. +.+.|
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l 96 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSL 96 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHH
Confidence 3456777999 99999999999999999988999999999 89999999999999999999999 88899998 99999
Q ss_pred HHHH
Q 005125 705 EKSV 708 (713)
Q Consensus 705 ~~~~ 708 (713)
.+||
T Consensus 97 ~~f~ 100 (100)
T cd02999 97 AAFY 100 (100)
T ss_pred HhhC
Confidence 8875
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-10 Score=111.00 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDL 387 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 387 (713)
++++|...|++| |.+|...+++++|.++|.++.. +.-. .++...|
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~-~~~~--------------------~~~~~~A 74 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAAD-CYEK--------------------LGDKFEA 74 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHH-HHHH--------------------TT-HHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHH-HHHH--------------------cCCHHHH
Confidence 566666655554 6677777888888888888766 2221 1121112
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHH
Q 005125 388 LKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDA 466 (713)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A 466 (713)
...|...+.+|... ++++|+.+|++|+.+...... ....+.++..+|.+|... |++++|
T Consensus 75 ---------------a~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~----~~~aA~~~~~lA~~ye~~~~d~e~A 134 (282)
T PF14938_consen 75 ---------------AKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR----FSQAAKCLKELAEIYEEQLGDYEKA 134 (282)
T ss_dssp ---------------HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-----HHHHHHHHHHHHHHHCCTT--HHHH
T ss_pred ---------------HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 13333334444444 666666666666554322111 012355677789999998 999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHH
Q 005125 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-------SVLLCNRAACRSK 539 (713)
Q Consensus 467 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~ 539 (713)
+++|++|+.+......... ....+..+|.++...|+|++|++.|++.....-++ ...++..+.|++.
T Consensus 135 i~~Y~~A~~~y~~e~~~~~------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 135 IEYYQKAAELYEQEGSPHS------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhh------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 9999999987433322221 12344579999999999999999999988653211 2456778899999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 540 LGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 540 ~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.||+..|...+++....+|.+...+
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 9999999999999999999775443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=116.55 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
+...|..++..|++++|+.+|+++++++|++..++. ++|.++..+|++++|+..+++++.++|+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~------------~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA------------DRAQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 455689999999999999999999999999999887 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|+.+|.+|..+|++++|+..|+++++++|++..+..
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999987765
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=96.29 Aligned_cols=91 Identities=13% Similarity=0.268 Sum_probs=79.3
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-eE
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG-SR 692 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g-~~ 692 (713)
+..+|...+.. ...+++.|++ |++|+.+.|.++++++.+ +.+.|+.||++..+.++..++|.++||+++|++| +.
T Consensus 7 ~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 7 TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCC
Confidence 34578877654 4467777888 999999999999999987 4589999999999999999999999999999998 88
Q ss_pred eeeecCC-C-HHHHHHHH
Q 005125 693 VKEIPGH-Q-CELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~-~~~~~~~~ 708 (713)
+.++.|. + .+.|.+||
T Consensus 87 ~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 87 YHSYNGWHRDADSILEFI 104 (104)
T ss_pred ceEccCCCCCHHHHHhhC
Confidence 9999998 6 89988875
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-09 Score=99.82 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.+...|++ ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 456789999999999999999999999999998875 5789999999999999999999999999999987 5689
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 331 HRLAMLYFRLG-----------EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 331 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
+.+|.++..+. ...+|+..|+..+. ..|+.......-.. +..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~-~yP~S~y~~~A~~~-----------------l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK-RYPNSEYAEEAKKR-----------------LAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH-H-TTSTTHHHHHHH-----------------HHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH-HCcCchHHHHHHHH-----------------HHHHHHHH----
Confidence 99999876653 23478888888888 77776422111100 00011111
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
..--+.+|..|.+.|.+..|+..++.+++..|+... ...++..++.+|..+|..+.|.
T Consensus 141 ---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~-------~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 ---AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA-------AEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ---HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH-------HHHHHHHHHHHHHHTT-HHHHH
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHHHHHHhCChHHHH
Confidence 123344688899999999999999999888776543 3568888899999999888553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-09 Score=103.71 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|....++|..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++. ++|..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-l~P~~ 373 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA-LDPNS 373 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCc
Confidence 566667777777777777777777777777777777777777777777777777777777777777 66654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=104.05 Aligned_cols=290 Identities=18% Similarity=0.127 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI----DPC--YHRA 329 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~ 329 (713)
+...+..|..++...++++|+..+.+.+..-.+. ...+-.+..++..+|.|++++.+.-..+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999998764432 345556677888899999988776554443 211 2578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----hHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS-----APQ 404 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~ 404 (713)
+.+++..+....++.+++.+..-.+. +...... .......+.++..+..++.|+++++.|+.+++..... .-.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~-lpgt~~~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLG-LPGTRAG-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCcc-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 89999999999999999988887776 4333321 1223566778889999999999999999999874332 226
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN--NKE 482 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 482 (713)
++..+|..+..+.|+++|+-+..+|.++.....-.-+.......+++.++..+..+|+.-.|.++.+++.++.-. +..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 888999999999999999999999987654432111112234667889999999999999999999999876322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHH
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSKLGQYEK-----AVEDCT 551 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~ 551 (713)
.+ ...+.-+|++|...|+.+.|..-|+.|...... ...++...|.++....-..+ |+++-+
T Consensus 244 ~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 244 LQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred HH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 22 223446999999999999999999999865321 24556666666655544444 777777
Q ss_pred HHHHhCC
Q 005125 552 AALIVMP 558 (713)
Q Consensus 552 ~al~~~p 558 (713)
+++++..
T Consensus 316 r~levA~ 322 (518)
T KOG1941|consen 316 RLLEVAS 322 (518)
T ss_pred HHHHHHH
Confidence 7777643
|
|
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-10 Score=95.33 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred HHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee--eec
Q 005125 622 FRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK--EIP 697 (713)
Q Consensus 622 ~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~ 697 (713)
+...+......++.|++ |++|+.+.|++++++..++.+.|..+|+++.+.++..++|.++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 44444444556666776 99999999999999988888999999999999999999999999999999876655 678
Q ss_pred CC-CHHHHHHHHHhh
Q 005125 698 GH-QCELLEKSVKLY 711 (713)
Q Consensus 698 g~-~~~~~~~~~~~~ 711 (713)
|. +..++.++|+..
T Consensus 95 G~~~~~el~~~i~~i 109 (113)
T cd02975 95 GLPAGYEFASLIEDI 109 (113)
T ss_pred ecCchHHHHHHHHHH
Confidence 88 788999998764
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=100.23 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4556679999999999999999999999999987653 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
+|.+|...|+...+...+..++. .+.+|++.+++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchh
Confidence 99999999998887777666654 3667778888888888775
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=87.68 Aligned_cols=67 Identities=24% Similarity=0.472 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDP 324 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 324 (713)
++..|..+|..++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56677888888888888888888888888888888888888888888887 68888888888887776
|
... |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=100.33 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=80.9
Q ss_pred ccccccceeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
.+||.... + +...|...+... ..+|+.|++ |++|+.+.|.|++++.+||.+.|++||++.+ ...++|..+
T Consensus 79 ~~~G~v~e-i-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 79 SKFGEVYE-I-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCCCeEEE-e-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCC
Confidence 46775443 3 456777655433 257777888 9999999999999999999999999999864 578999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
|||++|++|+.++++.|. +.+.|+.+|.++
T Consensus 154 PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 154 PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 999999999999999874 677888877654
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-10 Score=93.89 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=78.8
Q ss_pred HHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCC-C-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 621 RFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFP-S-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p-~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+..++...+..+++|.. +..+.-+.=++++++++|+ . +.|++||+|+.+.++.+|||+++||+++|++|+.++
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG 105 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE
Confidence 444555666777766666 4666777888999999997 3 899999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.+.++|+++.
T Consensus 106 ~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 106 VLNGIHPWAELINLMRGLV 124 (132)
T ss_pred EEeCcCCHHHHHHHHHHHh
Confidence 99999 9999999998763
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-07 Score=95.22 Aligned_cols=302 Identities=14% Similarity=0.144 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------------------------------------
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINS------------------------------------------------- 290 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------------------------------------- 290 (713)
..|..+|..|.+.|.+++|...|++++..--
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 3688899999999999999999999876421
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 005125 291 ------------------SKATYRSNKSAALIGLGRQIEALVECKEAIR-IDPCY-----HRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 291 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A 346 (713)
++..-|..+ +-+..|+..+-+..|..|+. .+|.. ...|..+|..|...|+.+.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 111111111 11123445555555555554 24432 35566677777777777777
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----------------ChHHHHHHH
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-----------------SAPQVYALQ 409 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~~l 409 (713)
...|+++.. ..=... ......|+..+..-....+++.|+...+++...-.. ....+|...
T Consensus 407 Rvifeka~~-V~y~~v--~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 407 RVIFEKATK-VPYKTV--EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHhhc-CCccch--HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 777777765 322111 122344556666666666777777766666543111 012445555
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID--PNNKEVIKGV 487 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 487 (713)
+......|-++.....|++.+.+.- ..+.+..+.|..+....-+++|.+.|++.+.+. |.-.+.|..+
T Consensus 484 ~DleEs~gtfestk~vYdriidLri----------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRI----------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 6666666666666666666665433 234456666777777777777777777777653 4445555431
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHH
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-S-VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS-KAR 564 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~ 564 (713)
.......+.--+.+.|...|++|++..|.. + ..|...|..-..-|-...|+..|++|-..-+... ...
T Consensus 554 ---------Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 554 ---------LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred ---------HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 122333334456777888888888776632 2 2344556666667777778888877655433221 111
Q ss_pred H-------------HHHHHHHHHHHHhCCCCHHH
Q 005125 565 L-------------EAAIQDYEMLIREIPGNEEV 585 (713)
Q Consensus 565 ~-------------~~A~~~~~~al~~~p~~~~~ 585 (713)
+ ..-...|++|++.-|+....
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 1 33457788888888876543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-09 Score=101.63 Aligned_cols=284 Identities=15% Similarity=0.072 Sum_probs=204.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINS----S--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-----HRAH 330 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 330 (713)
+-.+..+...+|.|++++.+--..+...- . ..+++.+++..+...-++.+++.+.+-.+.+.... ..++
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 44455666677777777665444443321 1 24678899999999999999999998888763322 4677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC----C-----
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD----S----- 401 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~----- 401 (713)
..+|.++..++.++++++.|++|++ +..++.+....+.....++..+..+.++++|+....++.++... +
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~-~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALR-YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHH-HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 7899999999999999999999998 76666666666778888899999999999999988888766321 1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
...+++.++..+..+|....|.++.+++.++.-...+.. ..+..+..+|.+|...|+.+.|..-|++|......-.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra----~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA----LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH----HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 124566788999999999999999999988765544322 3466788899999999999999999999987543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFKASKYK-----EACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
+-.. ++.++...+.++....-.. .|+++-++++++...- -..+..++.+|..+|.-++=-..+
T Consensus 281 drmg------qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 281 DRMG------QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred hhHH------HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 2111 1222334455544443333 3888888888775432 456889999999999888777777
Q ss_pred HHHHHh
Q 005125 551 TAALIV 556 (713)
Q Consensus 551 ~~al~~ 556 (713)
..+-+.
T Consensus 355 ~ra~~~ 360 (518)
T KOG1941|consen 355 VRAHEC 360 (518)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-08 Score=95.96 Aligned_cols=196 Identities=10% Similarity=-0.027 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA---HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
.+..++..|..+...|+|++|+..|++++...|....+ .+.+|.+|+..+++++|+..|++.++ ..|+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-~~P~~~------ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHP------ 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCcCCC------
Confidence 46667778888888888888888888888888876443 47788888888888888888888888 777763
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
..+.+++.+|.++...++- .+..-..++.
T Consensus 104 --------------------------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~~-------------- 132 (243)
T PRK10866 104 --------------------------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVDR-------------- 132 (243)
T ss_pred --------------------------------chHHHHHHHHHhhhhcchh-----hhhhccCCCc--------------
Confidence 1235666666655443211 1111111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV---KMAKA--MASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
.........+|+..|++.++..|+...+-... ..++. ...-...|..|++.|.|..|+.-++.+++..
T Consensus 133 -------~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y 205 (243)
T PRK10866 133 -------SDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY 205 (243)
T ss_pred -------cccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC
Confidence 00112234678899999999999986443322 22211 3334468999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 524 AYN---SVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 524 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
|+. .++++.++..|..+|..++|......
T Consensus 206 p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 206 PDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 865 67899999999999999999887654
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=92.63 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=77.4
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+.|...+. +..++.|++ |++|+.+.|.+++++..+. ++.++.+|+++.+.++..++|.++||+++|++|+ +.
T Consensus 8 ~~~f~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~ 84 (101)
T cd02994 8 DSNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-FR 84 (101)
T ss_pred hhhHHHHhC--CCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-EE
Confidence 457777663 347888998 9999999999999998763 5899999999999999999999999999999997 57
Q ss_pred eecCC-CHHHHHHHHHh
Q 005125 695 EIPGH-QCELLEKSVKL 710 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~ 710 (713)
++.|. +.+.|.++|++
T Consensus 85 ~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 85 RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 88898 99999999874
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=91.28 Aligned_cols=83 Identities=22% Similarity=0.452 Sum_probs=74.4
Q ss_pred hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHH
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCE 702 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 702 (713)
...+.+++.|++ |+.|+.+.|.++++.+.++ .+.++.+|++..+.++..++|.++|++++|++|+.+.++.|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 345566777887 9999999999999998884 589999999999999999999999999999999999999999 889
Q ss_pred HHHHHHH
Q 005125 703 LLEKSVK 709 (713)
Q Consensus 703 ~~~~~~~ 709 (713)
.|.++|+
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988874
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-10 Score=98.08 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=70.8
Q ss_pred hhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCc------ccEEEE
Q 005125 619 NERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSS------IPAFKI 686 (713)
Q Consensus 619 ~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~------~Pt~~~ 686 (713)
.++|...+.. ...+++.|++ |++|+++.|.++++++.++ ++.|++||+++.+.++..++|.+ +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 4578877643 3467788999 9999999999999999874 49999999999999999999998 999999
Q ss_pred EECCeEeeeecC
Q 005125 687 YKNGSRVKEIPG 698 (713)
Q Consensus 687 ~~~g~~~~~~~g 698 (713)
|++|+++++++|
T Consensus 115 f~~Gk~v~r~~G 126 (152)
T cd02962 115 FQGGKEVARRPY 126 (152)
T ss_pred EECCEEEEEEec
Confidence 999999999997
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.2e-07 Score=91.79 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=150.5
Q ss_pred hcHHHHHHHHHHHHHc-CCC----ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH
Q 005125 382 KRWNDLLKETQNVISF-GAD----SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV 456 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~-~p~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~ 456 (713)
++..+-+..|..+++. +|. ....+|...|..|...|+.+.|...|+++.+..-...+ .-+.+|+.-|..
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~------dLa~vw~~waem 434 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE------DLAEVWCAWAEM 434 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH------HHHHHHHHHHHH
Confidence 4455556666666543 443 33478899999999999999999999999887543332 346789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH
Q 005125 457 YIAAGRFEDAVKTAQDAAQIDPNNKE---------VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 457 ~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 527 (713)
-+...+++.|+.+.+.|... |..+. +...+ -+.+..|...+......|-++.-...|++.+++.--.|
T Consensus 435 Elrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rl--hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARL--HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHH--HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999998764 33322 11111 12244455678888888999999999999999988889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHH---------------HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMP--SYSKARL---------------EAAIQDYEMLIREIPGNEEVGRALF 590 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~---------------~~A~~~~~~al~~~p~~~~~~~~l~ 590 (713)
....|.|..+....-+++|.+.|++.+.+.+ .-.+.|. +.|...|++||+..| ++....++
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiy 589 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 9999999999999999999999999998864 3334444 889999999999888 44444444
Q ss_pred HHH
Q 005125 591 EAQ 593 (713)
Q Consensus 591 ~~~ 593 (713)
...
T Consensus 590 LlY 592 (835)
T KOG2047|consen 590 LLY 592 (835)
T ss_pred HHH
Confidence 333
|
|
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-10 Score=93.79 Aligned_cols=91 Identities=22% Similarity=0.397 Sum_probs=78.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHh----CC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKR----FP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~----~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+.+.|...+.....+++.|++ |++|+.+.|.++++++. ++ .+.++.||++..+.++..++|.++||+.+|+
T Consensus 7 ~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 7 TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEe
Confidence 356788877777778888999 99999999999998865 33 3789999999999999999999999999999
Q ss_pred CCeE-eeeecCC-CHHHHHHHH
Q 005125 689 NGSR-VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 689 ~g~~-~~~~~g~-~~~~~~~~~ 708 (713)
+|+. .....|. +.+.|.+||
T Consensus 87 ~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 87 NGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCcceecCCCCCHHHHHhhC
Confidence 9984 4777888 889988875
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-09 Score=92.02 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHR 332 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 332 (713)
+++++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+.+|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+|.++..+|++++|+.++.+++. ..|++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK-RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH-HCcCCh
Confidence 99999999999999999999999 888875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-09 Score=96.89 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
..+..++.+|..+...|++++|+.+|++++...|+..... ..+.++|.++...|++++|+..|++++...|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRS---------YILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3566899999999999999999999999999887654211 1223799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCH
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~ 583 (713)
.+...+..+|.++..+|+...|...++.++. .+++|++.|++++.++|++.
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------HHHHHHHHHHHHHhhCchhH
Confidence 9999999999999999999888888887764 36889999999999999984
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-08 Score=90.09 Aligned_cols=204 Identities=13% Similarity=0.028 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
..+..++..|..|-..|-+.-|...|.+++.+.|+-+.+++.+|.-+...|+|+.|.+.|...++++|.+.-++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHH
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET-QNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
++.-|++.-|.+.+.+-.+ .||+++.....+.. -...-+..+|...+ +++...+.+. .-|+ +...|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ-~D~~DPfR~LWLYl-------~E~k~dP~~A~tnL~qR~~~~d~e~--WG~~-iV~~y-- 209 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQ-DDPNDPFRSLWLYL-------NEQKLDPKQAKTNLKQRAEKSDKEQ--WGWN-IVEFY-- 209 (297)
T ss_pred eeecCchHhhHHHHHHHHh-cCCCChHHHHHHHH-------HHhhCCHHHHHHHHHHHHHhccHhh--hhHH-HHHHH--
Confidence 9999999999999999999 99999754332211 11223444444433 3333332221 1111 12222
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
+|+..+ ...++++.....+... +. ..-.+.++.+|..|...|+.++|...|+-++..+
T Consensus 210 LgkiS~-e~l~~~~~a~a~~n~~-~A--e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 210 LGKISE-ETLMERLKADATDNTS-LA--EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhhccH-HHHHHHHHhhccchHH-HH--HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 232211 1122222222221110 00 0235688999999999999999999999988754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-08 Score=94.51 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
.+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..|++.+. ..|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~------ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSP------ 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-T------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCc------
Confidence 35678888888889999999999999988887765 67888889999999999999988888888 777763
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
..+.+++.+|.++.....- .+
T Consensus 77 --------------------------------~~~~A~Y~~g~~~~~~~~~--~~------------------------- 97 (203)
T PF13525_consen 77 --------------------------------KADYALYMLGLSYYKQIPG--IL------------------------- 97 (203)
T ss_dssp --------------------------------THHHHHHHHHHHHHHHHHH--HH-------------------------
T ss_pred --------------------------------chhhHHHHHHHHHHHhCcc--ch-------------------------
Confidence 1235666666665554100 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG---VKMAKA--MASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
......+...+|+..|+..+...|+...+... +..++. ...-+.+|..|++.|.|..|+..|+.+++..
T Consensus 98 ------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 98 ------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp -------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred ------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 11223445789999999999999998654432 222222 3334568999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHH
Q 005125 524 AYN---SVLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 524 p~~---~~~~~~la~~~~~~g~~~~A~ 547 (713)
|+. .+++..++.+|.++|..+.|.
T Consensus 172 p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 172 PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 987 467889999999999988554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=91.65 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
+..++.+|..+...|++++|+..|++++..+|++. .++. .+|.+++..|++++|+..|++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHY------------WLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH------------HHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 34788899999999999999999999999998863 3443 69999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 524 AYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 524 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
|++ +.++..+|.++..+|++++|+..++++++..|++..+
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 875 6789999999999999999999999999999987653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=95.28 Aligned_cols=275 Identities=12% Similarity=0.061 Sum_probs=192.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|.+-..+..+|.+|+...+|..|..+|++.-...|.........+..++..+.+.+|+.........+.-...+...-
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44555567899999999999999999999999999999999999999999999999999998877654422234555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
+.+.+..+++..+....++.-. .+. .....+.+....+.|+++.|++.|+.+++...-.+ .+-++++.++
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~----en~-----Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH 188 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPS----ENE-----ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH 188 (459)
T ss_pred HHHhcccccCcchHHHHHhccC----CCc-----cchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH
Confidence 6777778888887777665432 111 23456677788889999999999999999876664 5666779999
Q ss_pred HHccCHHHHHHHhhccccC----ChhhHHhh---------hc------ccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKF----CLEYYTKL---------FG------LAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~----~~~~~~~~---------~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
++.++++.|+++..+.+.. .|+..-.. .+ ...-..++...+-++++.++++.|.+.+..
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD-- 266 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD-- 266 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc--
Confidence 9999999999988776543 22211000 00 001245677788899999999999876643
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 475 QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549 (713)
Q Consensus 475 ~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 549 (713)
+-|....-.. ...+.+++.. -..+++.+...-+.-.+.++|--.+.+-|+-.+|.+..-|+-|...
T Consensus 267 -mPPRaE~elD-------PvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 267 -MPPRAEEELD-------PVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred -CCCcccccCC-------chhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 3333211100 0011134322 2345666777777777778886677777887777777666666544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-09 Score=95.66 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.+|++++.++|.+...+..+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4578999999999999999999999999987763 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HcCCHHHHHHHHHH
Q 005125 336 LYF-------RLGEAEKAVSHYKK 352 (713)
Q Consensus 336 ~~~-------~~g~~~~A~~~~~~ 352 (713)
++. .+|++++|+..+.+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999 55555544444433
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=90.46 Aligned_cols=92 Identities=26% Similarity=0.464 Sum_probs=80.9
Q ss_pred hHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 620 ERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 620 ~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
+.|...+... +..++.|++ |+.|+.+.+.++++.+.++ .+.|+.+|.+..+.+...++|.++|++++|.+|+.+..
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 4566655553 477777888 9999999999999998885 59999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
+.|. +.+.|.++|++.
T Consensus 84 ~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 84 SVGALPKAALKQLINKN 100 (101)
T ss_pred ecCCCCHHHHHHHHHhh
Confidence 9999 889999999864
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-10 Score=92.06 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=78.0
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.++|...+... ..++.|++ |++|+.+.|.+++++..+. .+.++.+|++..+.++..++|.++||+.+|.+|..
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe
Confidence 45677777554 57788888 9999999999999988763 58999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHH
Q 005125 693 VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~ 708 (713)
+.++.|. +.+.|.+||
T Consensus 86 ~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 86 VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeEeeCCCCHHHHHhhC
Confidence 9999999 888888775
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=106.61 Aligned_cols=212 Identities=16% Similarity=0.133 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----H
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINS--S----KATYRSNKSAALIGLGRQIEALVECKEAIRIDP--CY----H 327 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~ 327 (713)
+.|...|..|...++|++|..+|.++.+..- + -+..+...+.+|... ++++|+.+|++++.+.- +. +
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4577889999999999999999999987632 1 144667777777666 99999999999998732 11 6
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----
Q 005125 328 RAHHRLAMLYFRL-GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS----- 401 (713)
Q Consensus 328 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----- 401 (713)
.++..+|.+|... |++++|+++|++|+. +.................+..+..+++|++|+..|++.....-+.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~-~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAE-LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 6899999999999 999999999999999 544444555666778889999999999999999999998754321
Q ss_pred -hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 005125 402 -APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--AGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 402 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p 478 (713)
....+...+.+++..||+..|...+++....+|..... ....+...+-.++.. ...+++|+..|....++++
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-----~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-----REYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-----HHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 22456677889999999999999999998888764331 234445555555543 4568888888876555543
|
|
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=92.52 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=73.9
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH-----------hhHHHcC----CCc
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP-----------YIAKSEG----VSS 680 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~-----------~~~~~~~----v~~ 680 (713)
+..++...+......++.|++ |++|+.+.|.|+++.++ ..+.++.||+|..+ .+...++ |.+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 345778888777777888888 99999999999999988 45778889888432 4445554 556
Q ss_pred ccEEEEEECCeEeeeecCC--CHHHHHHHHH
Q 005125 681 IPAFKIYKNGSRVKEIPGH--QCELLEKSVK 709 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~~ 709 (713)
+|||++|++|+.++++.|. +.++|.+++.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 9999999999999999995 7999998874
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-10 Score=84.68 Aligned_cols=63 Identities=30% Similarity=0.429 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005125 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG-QYEKAVEDCTAALIVMP 558 (713)
Q Consensus 496 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 558 (713)
+..+|.+++..|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+++++++++|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4479999999999999999999999999999999999999999999 79999999999999998
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-10 Score=110.82 Aligned_cols=211 Identities=13% Similarity=0.080 Sum_probs=147.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 409 (713)
+-..|+-|+++|.|++|+.||.+++. ++|.++ ..+.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-~~P~Np-----------------------------------------V~~~NR 137 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-VYPHNP-----------------------------------------VYHINR 137 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-cCCCCc-----------------------------------------cchhhH
Confidence 44567788888888888888888888 777663 455556
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 489 (713)
+.+|+++..|..|...+..|+.++..+.. +|..+|.+-..+|...+|.+.++.+|++.|++.+....+..
T Consensus 138 A~AYlk~K~FA~AE~DC~~AiaLd~~Y~K----------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 138 ALAYLKQKSFAQAEEDCEAAIALDKLYVK----------AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHH----------HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 66666666666666666666665553322 45555666666666666666666666666665554443322
Q ss_pred HHH-----------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 490 AKA-----------------------MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKA 546 (713)
Q Consensus 490 ~~~-----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 546 (713)
+.. .......|..++..|.++.++.+|..-+..+.++..+..+ +..|.+.-++++|
T Consensus 208 i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~ 286 (536)
T KOG4648|consen 208 INSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCG 286 (536)
T ss_pred hcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchh
Confidence 210 1123346788888899999999998888777666666666 8889999999999
Q ss_pred HHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 547 ~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+..+.+++..+|....+.. .++...++.++.+.|.+......+-+..
T Consensus 287 ~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~ 345 (536)
T KOG4648|consen 287 IIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKD 345 (536)
T ss_pred HHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhc
Confidence 9999999999887654332 8889999999999999987766655543
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=95.62 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=78.3
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCc--HhhHHHcCCCcccEEEEEE-CCeEee
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYK-NGSRVK 694 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~-~g~~~~ 694 (713)
.|...+.....+++.|++ |++|+.+.|.|+++.+.+. .+.|+.|++|.. +.++..++|.++||++||. +|+.+.
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 456666667788888999 9999999999999998884 467888887754 5788999999999999994 899999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.++|.++|+++.
T Consensus 92 ~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 92 QSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 99999 7899999998763
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=99.75 Aligned_cols=109 Identities=22% Similarity=0.223 Sum_probs=101.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.+|+|++-|..+|.+|+.+|++..|...|.+|+++.|++++.+..+|.++.... ...++...+++++.++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 789999999999999999999999999999999999999999999999988764 46789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
+.||..++..|+|.+|+..++..+. ..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD-LLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-cCCCCCc
Confidence 9999999999999999999999999 6666543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=87.26 Aligned_cols=98 Identities=30% Similarity=0.504 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
+++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhcc
Q 005125 341 GEAEKAVSHYKKSSSLANQ 359 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p 359 (713)
|++++|..++.+++. ..|
T Consensus 82 ~~~~~a~~~~~~~~~-~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALE-LDP 99 (100)
T ss_pred HhHHHHHHHHHHHHc-cCC
Confidence 999999999999988 665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-07 Score=85.34 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=181.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 346 (713)
+-++-.|+|..++..-.+.-... ........+.+.|..+|++..-+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44556788888877766654333 667777888888888888776655444332 11234555556555555555554
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHh
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSY 426 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 426 (713)
+.-..+.+. ++... .........+.++..-+++++|+........+ ++...--.++.++.+++-|...+
T Consensus 92 ~~~l~E~~a--~~~~~---sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------E~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 92 LASLYELVA--DSTDG---SNLIDLLLAAIIYMHDGDFDEALKALHLGENL------EAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred HHHHHHHHH--hhccc---hhHHHHHHhhHHhhcCCChHHHHHHHhccchH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 11110 11234455566777778888887777663322 45555567888888899999999
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
+++.+++.+. .+..+|..+.+ .+++.+|.-+|++.-+..|..+.... .++.+
T Consensus 161 k~mq~ided~------------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~lln------------G~Av~ 216 (299)
T KOG3081|consen 161 KKMQQIDEDA------------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLN------------GQAVC 216 (299)
T ss_pred HHHHccchHH------------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHc------------cHHHH
Confidence 8888877653 44445555544 34688888888888876666666665 48888
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHH-HHHHHHHHHHHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE-DCTAALIVMPSYSKARL-EAAIQDYEMLIR 577 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~-~~A~~~~~~al~ 577 (713)
...+|+|++|...++.++..++++++++.|+-.+-...|.-.++.+ .+.+....+|+++..-. .+....|+++..
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVL 293 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888888777664 44555666777765433 556666666543
|
|
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=90.10 Aligned_cols=93 Identities=22% Similarity=0.299 Sum_probs=82.3
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
...|...+......++.|++ |+.|+.+.+.++.++..+. .+.++.+|.+..+.++..++|..+|++.+|..|+.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcc
Confidence 34677777766777888988 9999999999999998874 499999999999999999999999999999998878
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
..+.|. +.+.|..||+++
T Consensus 83 ~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 83 VDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred eeecCCCCHHHHHHHHHhc
Confidence 889999 999999999875
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=94.00 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+..|++++.+.|+.... ..++.++|.++...|++++|+.+|++++.++|.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR---------SYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 46788999999999999999999999999987764321 012338999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHH
Q 005125 526 NSVLLCNRAACRS-------KLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEV 585 (713)
Q Consensus 526 ~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~ 585 (713)
....+.++|.++. .+|++++|+..++ +|+..|++++..+|.+...
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~---------------~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD---------------QAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH---------------HHHHHHHHHHHhCcccHHH
Confidence 9999999999998 6666666665554 4566789999999877643
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=91.32 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=77.1
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHH---HHHHHhCC-CcEEEEEeCCC----cHhhHHHcCCCcccEEEEEE-
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRFP-SVNFLKVEVED----HPYIAKSEGVSSIPAFKIYK- 688 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p-~~~~~~v~~d~----~~~~~~~~~v~~~Pt~~~~~- 688 (713)
+.|...+.....+++.|++ |++|+.+.+.+ +++.+.+. .+.++.+|+++ .+.++..++|.++||+++|.
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 3566677777788888998 99999999887 56776664 78999999987 67899999999999999999
Q ss_pred -CCeEeeeecCC-CHHHHHHHHH
Q 005125 689 -NGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 689 -~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
+|+.+.+++|. +.+.|.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 79999999999 9999998874
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-09 Score=102.18 Aligned_cols=113 Identities=24% Similarity=0.314 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSS---------------KATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
+......|+.|++.|+|..|...|++|+..-.. ...++.+++.||..+++|.+|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345778899999999999999999999876321 13478999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 372 (713)
|+|..++++.|.++..+|+|+.|+..|+++++ ++|.+......+....
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALK-LEPSNKAARAELIKLK 335 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999975544444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-09 Score=86.00 Aligned_cols=99 Identities=28% Similarity=0.435 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++.+|.++...|++++|+..++++++..|.+..++. .+|.++...+++++|+..|++++...|.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYY------------NLAAAYYKLGKYEEALEDYEKALELDPDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 5778899999999999999999999999999886665 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++..+|.++...|++++|...++++++..|.
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999998874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-09 Score=91.07 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=99.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
+.++.-+..+..|..++..|++++|...|+-..-.+|.+.+.|..||.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 45566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|.||..+|+.+.|..+|..++. .|.+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~--~~~~ 137 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE--RTED 137 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh--Ccch
Confidence 9999999999999999999987 3544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=86.89 Aligned_cols=81 Identities=22% Similarity=0.449 Sum_probs=73.5
Q ss_pred hcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 272 KARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
+|+|++|+.+|+++++.+|. +..+++.+|.+|+..|++++|+..+++ +..++.+...++.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888998899999999999999999999999
Q ss_pred HHHH
Q 005125 350 YKKS 353 (713)
Q Consensus 350 ~~~a 353 (713)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=88.81 Aligned_cols=90 Identities=20% Similarity=0.361 Sum_probs=79.4
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECCe
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
...|...+......++.|++ |++|+.+.|.+..+.+.++ .+.++.+|++. .+.++..++|.++||+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 44777777777788888999 9999999999999987763 47889999998 99999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHH
Q 005125 692 RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~ 708 (713)
.+.++.|. +.+.|.+||
T Consensus 87 ~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eeEEeCCCCCHHHHHhhC
Confidence 99999998 999988875
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-09 Score=80.54 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999875
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-09 Score=85.02 Aligned_cols=89 Identities=33% Similarity=0.593 Sum_probs=79.4
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 698 (713)
+|...+......++.|++ |+.|..+.+.++++....+++.++.+|.+..+.+...++|.++|++++|.+|+.+..+.|
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 81 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG 81 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence 455566666777888888 999999999999999888889999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHH
Q 005125 699 H-QCELLEKSVK 709 (713)
Q Consensus 699 ~-~~~~~~~~~~ 709 (713)
. +.+.|.++|+
T Consensus 82 ~~~~~~l~~~i~ 93 (93)
T cd02947 82 ADPKEELEEFLE 93 (93)
T ss_pred CCCHHHHHHHhC
Confidence 9 7799988874
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-09 Score=97.98 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=82.8
Q ss_pred chhHHHHHhhc-----CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 618 SNERFRHFVTS-----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 618 ~~~~~~~~l~~-----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
+...|...+.. .+.+++.|++ |++|+.+.|.++++++.++ .+.+..+|++..+.++..++|.++||+.+|.+
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 45688887643 3678888999 9999999999999999885 47899999999999999999999999999999
Q ss_pred CeEeeeecCC-CHHHHHHHHHhh
Q 005125 690 GSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+.+....|. +.+.|.+|+.+.
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHHH
Confidence 9999888887 999999998754
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-08 Score=86.79 Aligned_cols=126 Identities=19% Similarity=0.112 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAM 335 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 335 (713)
.+.........++...+...+++.+..+|+. ..+.+.+|.++...|++++|+..|+.++...|+. ..+..+||.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4445555556788888888888888888877 4567778888888888888888888888876554 457778888
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
++...|++++|+..++.... + ...+.++..+|.+|..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~---~----------------------------------------~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPD---E----------------------------------------AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHcCCHHHHHHHHHhccC---c----------------------------------------chHHHHHHHHHHHHHH
Confidence 88888888888888755221 1 1124667778999999
Q ss_pred ccCHHHHHHHhhccc
Q 005125 416 LQRHQEAHDSYNKSP 430 (713)
Q Consensus 416 ~g~~~~A~~~~~~al 430 (713)
.|++++|+..|++|+
T Consensus 131 ~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 131 QGDYDEARAAYQKAL 145 (145)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998875
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.5e-09 Score=86.73 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=76.9
Q ss_pred hhHHHHHhhcCCc-eEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-eEe
Q 005125 619 NERFRHFVTSPGM-AVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG-SRV 693 (713)
Q Consensus 619 ~~~~~~~l~~~~~-~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 693 (713)
...|...+...+. .++.|++ |++|+.+.|.|.++++.+ +.+.++.+|++..+.+++.++|.++|++++|.+| ...
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 4567776655444 7778888 999999999999999887 4689999999999999999999999999999988 555
Q ss_pred eeecCC-CHHHHHHHH
Q 005125 694 KEIPGH-QCELLEKSV 708 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~ 708 (713)
..+.|. +.+.|.+|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 678888 889998886
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-08 Score=97.71 Aligned_cols=116 Identities=27% Similarity=0.247 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDP----NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
.....|..|++.|+|..|...|++|+..-. .+.+ .........+.++.|++.++.++++|.+|+..+.++|+++|
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e-e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE-EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH-HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 445569999999999999999999987532 1111 11122233466778999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++..+++..|.++..+|+++.|+..|++|++++|++..+..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999966554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=80.09 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327 (713)
Q Consensus 264 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 327 (713)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-07 Score=104.30 Aligned_cols=242 Identities=15% Similarity=0.060 Sum_probs=193.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 005125 307 GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWND 386 (713)
Q Consensus 307 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (713)
++-.+..+.|++.+.-+|+..-.|..+-..+...++.++|.+.+++|+..+++...+ ..+..|.........-|.-+.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--EKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--EKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--HHHHHHHHHHhHHHhhCcHHH
Confidence 344456778889999999999999999889999999999999999999866665432 223334444444444566677
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH
Q 005125 387 LLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466 (713)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 466 (713)
..+.|++|.+..... .+|..|..+|...+++++|.++|+..++...+ ...+|..+|..++.+.+-+.|
T Consensus 1516 l~kVFeRAcqycd~~--~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----------~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAY--TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----------TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HHHHHHHHHHhcchH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----------hhhHHHHHHHHHhcccHHHHH
Confidence 778888888876543 67888999999999999999999999875542 455899999999999999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005125 467 VKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544 (713)
Q Consensus 467 ~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 544 (713)
...+.+||..-|. +.+... ..|.+-++.|+-+.+...|+-.+.-+|...++|.-+...-.+.|+.+
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~Is------------kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFIS------------KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHH------------HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence 9999999999998 444443 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhC
Q 005125 545 KAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREI 579 (713)
Q Consensus 545 ~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~ 579 (713)
.+...|++++.+.=.- .++.-.|.+-|+..
T Consensus 1652 ~vR~lfeRvi~l~l~~-----kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSI-----KKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHHhcCCCh-----hHhHHHHHHHHHHH
Confidence 9999999999875332 33444555555543
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-09 Score=88.44 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=76.7
Q ss_pred hhHHHHHhhcCCc-eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECCe-
Q 005125 619 NERFRHFVTSPGM-AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNGS- 691 (713)
Q Consensus 619 ~~~~~~~l~~~~~-~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g~- 691 (713)
...|...+...+. .++.|++ |++|+.+.|.++++++.++ .+.++.+|++. .+.++..++|.++||+.+|..|.
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 4567777765554 7778888 9999999999999998874 57889999998 88999999999999999999886
Q ss_pred ----EeeeecCC-CHHHHHHHHH
Q 005125 692 ----RVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 692 ----~~~~~~g~-~~~~~~~~~~ 709 (713)
....+.|. +.+.|.+||.
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred ccccccccccCccCHHHHHHHhC
Confidence 45667788 8999998874
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=88.68 Aligned_cols=103 Identities=31% Similarity=0.480 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++.+..-|+.++..|+|++|..-|..||++.|.. ..+|.+.|.+++.++.++.|+..+.++|+++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3457888999999999999999999999999865 45788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+..|++|++.|.++++ .+|...
T Consensus 175 Aeayek~ek~eealeDyKki~E-~dPs~~ 202 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILE-SDPSRR 202 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH-hCcchH
Confidence 9999999999999999999999 999874
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-06 Score=84.56 Aligned_cols=227 Identities=30% Similarity=0.334 Sum_probs=172.3
Q ss_pred hcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 272 KARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIR--IDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
.+.+..+...+..++...+. ........+..+...+++..++..+...+. ..+.....+..++..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888888888888776 377888888999999999999999999887 67788888889999999999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHHccCHHHHHHHh
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE-ALLRLQRHQEAHDSY 426 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~ 426 (713)
..+..++. ..+... ......+. ++...|++++|...|
T Consensus 116 ~~~~~~~~-~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~a~~~~ 153 (291)
T COG0457 116 ELLEKALA-LDPDPD-----------------------------------------LAEALLALGALYELGDYEEALELY 153 (291)
T ss_pred HHHHHHHc-CCCCcc-----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988887 665541 11222233 677777777777777
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN-NKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
.+++...+.. ......+...+..+...+++++|+..+.+++...+. ....+. .++..+..
T Consensus 154 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 214 (291)
T COG0457 154 EKALELDPEL-------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL------------NLGLLYLK 214 (291)
T ss_pred HHHHhcCCCc-------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH------------HhhHHHHH
Confidence 7776544410 012334455555677788888888888888888887 455554 57888888
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+++++|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888888888888876777777777777777788888888888888876
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-09 Score=86.36 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=76.1
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.|... ...+..++.|++ |++|+.+.|.+++++..+ ..+.+..+|++..+.++..++|.++||+++|.+| .+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 455553 445678888888 999999999999999876 2488999999999999999999999999999876 45
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
..+.|. +.+.|.+++++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 678888 999999999875
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-08 Score=98.29 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 005125 261 ELKFMGNEAYNKA---RFEDALALYDRAI---AINSSKATYRSNKSAALIGL---------GRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 261 ~~~~lg~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 325 (713)
.++..|...+..+ ..+.|+.+|.+++ +++|+.+.+|..+|.|++.. ....+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4577777776554 4577999999999 99999999999999999865 3456889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
++.++..+|.++...++++.|+..|++|+. ++|+.. .+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~-L~Pn~A-----------------------------------------~~ 374 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI-HSTDIA-----------------------------------------SL 374 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh-cCCccH-----------------------------------------HH
Confidence 999999999999999999999999999999 998873 77
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
|+..|.++...|+.++|++.++++++++|-.... ....+-.-.+-....++|+..|-+-.
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA---------VVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH---------HHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 8888999999999999999999999998853221 12222221334556788888876543
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.2e-09 Score=85.79 Aligned_cols=90 Identities=21% Similarity=0.322 Sum_probs=79.8
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-eE
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG-SR 692 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g-~~ 692 (713)
...|...+......++.|++ |+.|+.+.+.+.++++.+ +.+.|+.+|.+..+.+...++|..+|++++|..| ..
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 84 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKE 84 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcc
Confidence 34777777777788888888 999999999999999877 6799999999999999999999999999999987 78
Q ss_pred eeeecCC-CHHHHHHHH
Q 005125 693 VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~ 708 (713)
+.++.|. +.+.|.+||
T Consensus 85 ~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 85 PVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccCCCCcCHHHHHhhC
Confidence 8888888 888888774
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=83.15 Aligned_cols=81 Identities=28% Similarity=0.434 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 537 (713)
.|++++|+.+|+++++.+|.+ ...+. .+|.+++..|+|++|+..+++ +..++.+...++.+|.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~------------~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLY------------NLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHH------------HHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHH------------HHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 689999999999999999964 23333 689999999999999999999 888998889999999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 005125 538 SKLGQYEKAVEDCTAA 553 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~a 553 (713)
.++|++++|+..++++
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=84.32 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
.+..++.+|..|-.+|-+.-|.-.|.+++.+.|+.+.++..||..+...|+++.|.+.|...++ +||.+. .++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-LDp~y~------Ya~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LDPTYN------YAH 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-cCCcch------HHH
Confidence 3567888899999999999999999999999999999999999999999999999999999999 999985 678
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhh-ccccCChhhHHhhhcccCcHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYN-KSPKFCLEYYTKLFGLAGGAYLL 450 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~ 450 (713)
++++..+.--|++.-|.+.+.+-.+.+|.++-..+.. .+-...-+..+|...+. ++...+.+. .-|
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL--Yl~E~k~dP~~A~tnL~qR~~~~d~e~-----------WG~ 203 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL--YLNEQKLDPKQAKTNLKQRAEKSDKEQ-----------WGW 203 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH--HHHHhhCCHHHHHHHHHHHHHhccHhh-----------hhH
Confidence 8888888889999999999999999999886332221 22233445666665543 344333221 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC----
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN---- 526 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 526 (713)
+. +-+.+|+..+ ...++++.+-..++...-.. -.++++.+|..+...|+.++|...|+-++..+--+
T Consensus 204 ~i---V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~-----LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~ 274 (297)
T COG4785 204 NI---VEFYLGKISE-ETLMERLKADATDNTSLAEH-----LTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEH 274 (297)
T ss_pred HH---HHHHHhhccH-HHHHHHHHhhccchHHHHHH-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 1122333322 22344444333333221111 13456679999999999999999999988754322
Q ss_pred HHHHHHHHHHHHHcCC
Q 005125 527 SVLLCNRAACRSKLGQ 542 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~ 542 (713)
--+.+.|+.++....+
T Consensus 275 RyA~~EL~~l~q~~~~ 290 (297)
T COG4785 275 RYALLELSLLGQDQDD 290 (297)
T ss_pred HHHHHHHHHhccccch
Confidence 2234444444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-06 Score=80.27 Aligned_cols=269 Identities=14% Similarity=0.054 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
...+-++..-+......|+++.|..-|+..+. +|.. .--+..|-.--.++|..+.|+.+.+++....|..+.++...-
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 34455677778888999999999999998765 4432 222333333445789999999999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSS--LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
...+..|+++.|++..+.... .+.++....... ..+..++... -..+...|......++++.|+..|.+... +..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rA-vLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A-Ara 272 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRA-VLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA-ARA 272 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH-HHH
Confidence 888999999999999887655 133332221111 1111122221 23457788888999999999998765554 889
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA---AQIDPNNKEVIKGVKM 489 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~~~~ 489 (713)
+++.|+..++-.+++.+.+..|.. . ++..|....--+.++.-++++ ..+.|++.+...
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP-----------~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~---- 333 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHP-----------D----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSL---- 333 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCCh-----------H----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHH----
Confidence 999999999999999998887732 1 344444443334444444443 456888888776
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005125 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL-GQYEKAVEDCTAALIV 556 (713)
Q Consensus 490 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 556 (713)
..+...+..|+|..|...-+.+....| ...++..++.+-... ||-.++...+-++++-
T Consensus 334 --------~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 334 --------AVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred --------HHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 588888999999999999999999998 455667778777655 9999999999999874
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=93.04 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 258 DPEELKFMGNEA-YNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
+...++..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|++++...|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 446678888876 56799999999999999999988 5799999999999999999999999999998875 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.+|.++..+|++++|+..|+++++ ..|+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~-~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK-KYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-HCcCCH
Confidence 9999999999999999999999999 888875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=102.60 Aligned_cols=141 Identities=10% Similarity=-0.017 Sum_probs=102.6
Q ss_pred cCCCCHH--HHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 005125 254 LNKLDPE--ELKFMGNEAYNKAR---FEDALALYDRAIAINSSKATYRSNKSAALIGLG--------RQIEALVECKEAI 320 (713)
Q Consensus 254 ~~~~~~~--~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 320 (713)
..|.+++ .++..|..++..++ +.+|+.+|++|++++|+++.++..++.+|.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455554 45677777776544 889999999999999999999998888876542 2455666667766
Q ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 321 RI--DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 321 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
.+ +|..+.+|..+|..+...|++++|...+++|+. ++|.. ..+..++..+...|++++|++.|++++.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~ps~-------~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-LEMSW-------LNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 64 777788898899999999999999999999999 88742 345555555555666666666666666666
Q ss_pred CCCh
Q 005125 399 ADSA 402 (713)
Q Consensus 399 p~~~ 402 (713)
|...
T Consensus 484 P~~p 487 (517)
T PRK10153 484 PGEN 487 (517)
T ss_pred CCCc
Confidence 5553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=82.77 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.+..+..|.-++..|++++|...|+-....+|.++..|. .+|.++..+++|++|+..|..|..+++++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~------------GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTM------------GLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 446778899999999999999999999999999999886 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIP 580 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p 580 (713)
+...+..|.||+.+|+.+.|...|+.++. .|.+.. ..++|...++ ++...+
T Consensus 105 p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-l~~~A~~~L~-~l~~~~ 155 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES-LRAKALVYLE-ALKTAE 155 (165)
T ss_pred CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-HHHHHHHHHH-HHHccc
Confidence 99999999999999999999999999998 455322 1244443333 444443
|
|
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=84.41 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=71.0
Q ss_pred cchhHHHHHhhc--CCceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCc-------HhhHHHcC
Q 005125 617 SSNERFRHFVTS--PGMAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDH-------PYIAKSEG 677 (713)
Q Consensus 617 ~~~~~~~~~l~~--~~~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~-------~~~~~~~~ 677 (713)
.+.+.|...+.. .+.+++.|++ ||+|+.+.|.++++...++ ++.|++||+++. ..++..++
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 345677777765 4567777887 9999999999999999997 799999999874 58999999
Q ss_pred CC-cccEEEEEECCeEeeeecCCCHHHHHHHH
Q 005125 678 VS-SIPAFKIYKNGSRVKEIPGHQCELLEKSV 708 (713)
Q Consensus 678 v~-~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 708 (713)
|. ++|||++|+.|+.+.+-.-.+.+.+..++
T Consensus 87 I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 98 99999999887654332222566655543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=103.65 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=108.4
Q ss_pred HHHHHHHHHHccC---HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 005125 406 YALQAEALLRLQR---HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA--------GRFEDAVKTAQDAA 474 (713)
Q Consensus 406 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al 474 (713)
++..|..|...++ +..|+.+|++|++++|++.. ++-.++.+|... .+...+....++++
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----------AQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445666665544 78999999999999997543 455555555443 23456667777766
Q ss_pred Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 475 QI--DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 475 ~~--~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
.+ +|..+.++. .+|..+...|++++|...|++|++++| +..+|..+|.++...|++++|++.|++
T Consensus 412 al~~~~~~~~~~~------------ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 412 ALPELNVLPRIYE------------ILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hcccCcCChHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 666776665 478888889999999999999999999 589999999999999999999999999
Q ss_pred HHHhCCCChHHHH
Q 005125 553 ALIVMPSYSKARL 565 (713)
Q Consensus 553 al~~~p~~~~a~~ 565 (713)
|+.++|.++..++
T Consensus 479 A~~L~P~~pt~~~ 491 (517)
T PRK10153 479 AFNLRPGENTLYW 491 (517)
T ss_pred HHhcCCCCchHHH
Confidence 9999999886544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-06 Score=79.92 Aligned_cols=246 Identities=18% Similarity=0.150 Sum_probs=168.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE 380 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~ 380 (713)
+-++..|+|..++...++.-... ........++..|..+|++..-+......-. ..+.+....+.....
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~----------~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKA----------TPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccC----------ChHHHHHHHHHHhhC
Confidence 45667899999998888765443 6677888899999999987765543322110 112223333333333
Q ss_pred hhcHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH
Q 005125 381 LKRWNDLLKETQNVISF-GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA 459 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 459 (713)
-++-++-+......+.. .......+...-|.+|...|++++|+........ .++...--.++.+
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------------lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------------LEAAALNVQILLK 149 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------------HHHHHHHHHHHHH
Confidence 33334434333333322 2222224555568899999999999999987432 2344444678889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
+.+++-|...++++..++.+..-. .+|..|.. -+++.+|.-+|++.-+..|-.+..+...+.
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLt--------------QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av 215 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLT--------------QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAV 215 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHH--------------HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHH
Confidence 999999999999998887654322 34444443 357899999999999977779999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL-------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
|++.+|+|++|...++.++..++++++.+. +--.+...+....+|+++-+.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999999999998876 223345555556666665443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-07 Score=81.68 Aligned_cols=120 Identities=19% Similarity=0.187 Sum_probs=98.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 005125 305 GLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL 381 (713)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~ 381 (713)
..+++..+...+++.+.-+|+. ..+.+.+|.++...|++++|+..|+.++. ..|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l------------------ 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPEL------------------ 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHH------------------
Confidence 5788888988999999999988 56788899999999999999999999988 5544310
Q ss_pred hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC
Q 005125 382 KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 461 (713)
.+.+...++.++...|++++|+..++..... + ..+.++..+|.+|...|
T Consensus 84 --------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-~----------~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 84 --------------------KPLARLRLARILLQQGQYDEALATLQQIPDE-A----------FKALAAELLGDIYLAQG 132 (145)
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-c----------hHHHHHHHHHHHHHHCC
Confidence 1356777899999999999999999773221 1 24557888999999999
Q ss_pred CHHHHHHHHHHHH
Q 005125 462 RFEDAVKTAQDAA 474 (713)
Q Consensus 462 ~~~~A~~~~~~al 474 (713)
++++|+..|++||
T Consensus 133 ~~~~A~~~y~~Al 145 (145)
T PF09976_consen 133 DYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999999875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-06 Score=82.17 Aligned_cols=205 Identities=26% Similarity=0.342 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIA--INSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM- 335 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 335 (713)
.......+..+...+++..++..+..++. ..+.....+...+..+...+++..++..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 56788899999999999999999999997 788888999999999999999999999999999988887666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQK--DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
++...|+++.|...|.+++. ..|. .. ...+...+..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~----------------------------------------~~~~~~~~~~~ 177 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNEL----------------------------------------AEALLALGALL 177 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccch----------------------------------------HHHHHHhhhHH
Confidence 89999999999999999987 7763 11 12333334445
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
...+++++|+..+.+++...+.. ....+..++..+...+++++|+..+..++...|.....+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 240 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDD---------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY-------- 240 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCccc---------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHh--------
Confidence 66666777777777766665531 2335666777777777888888888888877777433333
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.++..+...+.+++|...+.+++...|.
T Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 241 ----NLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ----hHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3566666666788888888888877775
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=88.47 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG---EAEKAVSHY 350 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 350 (713)
..++-+.-++.-+..+|++++-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.++..+. ...++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777788889999999999999999999999999999999999999999999999999888764 356788999
Q ss_pred HHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 005125 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP 403 (713)
Q Consensus 351 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 403 (713)
++++. +||.+. .....++..+++.|+|.+|+..++..++..|.+.+
T Consensus 217 ~~al~-~D~~~i------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALA-LDPANI------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHh-cCCccH------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999 999984 56666677777777777777777777777766654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=93.89 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=118.4
Q ss_pred HHHHHHHHHcc---CHHHHHHHhhccc---cCChhhHHhhhcccCcHHHHHHHHHHHHHc---------CCHHHHHHHHH
Q 005125 407 ALQAEALLRLQ---RHQEAHDSYNKSP---KFCLEYYTKLFGLAGGAYLLIVRAQVYIAA---------GRFEDAVKTAQ 471 (713)
Q Consensus 407 ~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~ 471 (713)
+..|...+..+ ..+.|+.+|.+|+ .++|++ +.++..++.++... .+..+|.++.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK----------TECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 44455554433 3567888888888 777754 33555566665542 34578999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
+|++++|.++.++. .+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++
T Consensus 329 rAveld~~Da~a~~------------~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 329 YVSDITTVDGKILA------------IMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHhcCCCCHHHHH------------HHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHH-------------HHHHHHHHHHH
Q 005125 552 AALIVMPSYSKARL-------------EAAIQDYEMLI 576 (713)
Q Consensus 552 ~al~~~p~~~~a~~-------------~~A~~~~~~al 576 (713)
++++++|.-..+-. +.|+..|-+-.
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 99999998665433 66666665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=78.58 Aligned_cols=96 Identities=26% Similarity=0.244 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPC---YHRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 333 (713)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975443 568999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~ 355 (713)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.3e-08 Score=84.67 Aligned_cols=108 Identities=25% Similarity=0.253 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
-+-.-|.-++..|+|++|..-|..||.+.|....-.. ...+.+.|.++.+++.++.|+..+.++|+++|.+..
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r-------sIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER-------SILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH-------HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 4445588899999999999999999999988654221 233458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
++..+|.+|.++..+++|++.|++.++++|....+
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999999999999999999987543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=78.75 Aligned_cols=113 Identities=24% Similarity=0.140 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY-- 525 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 525 (713)
.+++.+|.++...|+.++|+.+|++++........... ++..+|..+..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~---------a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRR---------ALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 37888999999999999999999999997666543221 2337999999999999999999999999888
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005125 526 -NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYE 573 (713)
Q Consensus 526 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~ 573 (713)
+..+...++.++...|++++|+..+-.++.-... .+.+|+..|-
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~----~y~ra~~~ya 117 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAETLP----RYRRAIRFYA 117 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 7788889999999999999999999888763211 4455555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=92.31 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 446 GAYLLIVRAQVY-IAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 446 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
.....+..+..+ ...|+|++|+..|++.++..|++. .+++ .+|.+|+..|++++|+..|++++.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y------------~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANY------------WLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677777776 567999999999999999999984 4555 599999999999999999999999
Q ss_pred cCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 522 HEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 522 ~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
..|++ +++++.+|.++..+|++++|+..|+++++..|+...+
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 88874 7899999999999999999999999999999988654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-06 Score=96.56 Aligned_cols=237 Identities=11% Similarity=0.042 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI-DPCY----HRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
-.+..+-|++.+.-+|+....|...-.-+.++++.++|.+.+++||.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788899999999999999999999999999999999999974 4432 23444444444455677778889
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc
Q 005125 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429 (713)
Q Consensus 350 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (713)
|++|.+..+| +..+..++.+|...+.+++|.+.++..++...+ ...+|...|..+++..+-+.|...+.+|
T Consensus 1520 FeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999884444 466888899999999999999999999998774 4589999999999999999999999999
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 509 (713)
++.-|.. ....+....|.+.++.|+.+.+...|+..+..+|.-.+.|.. ....-.+.|+.
T Consensus 1591 L~~lPk~--------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~V------------Yid~eik~~~~ 1650 (1710)
T KOG1070|consen 1591 LKSLPKQ--------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSV------------YIDMEIKHGDI 1650 (1710)
T ss_pred Hhhcchh--------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHH------------HHHHHHccCCH
Confidence 9988862 245577778999999999999999999999999999999984 67778889999
Q ss_pred HHHHHHHHHHhccC--CCCHHHHHHHHHHHHHc
Q 005125 510 KEACYAYSEGLEHE--AYNSVLLCNRAACRSKL 540 (713)
Q Consensus 510 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 540 (713)
+.+...|++++.+. |.....++..-.-|.+.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 99999999999764 55555555555555443
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=83.57 Aligned_cols=89 Identities=26% Similarity=0.356 Sum_probs=75.9
Q ss_pred hHHHHHhhcCC-ceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCC-cHhhHHHcCCCcccEEEEEECC-e
Q 005125 620 ERFRHFVTSPG-MAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVED-HPYIAKSEGVSSIPAFKIYKNG-S 691 (713)
Q Consensus 620 ~~~~~~l~~~~-~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~-~~~~~~~~~v~~~Pt~~~~~~g-~ 691 (713)
+.|...+...+ ..++.|++ |++|+.+.|.+..+++.+. .+.++.+|.+. .+.++..++|.++|++++|..| .
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 46666665555 67778888 9999999999999998863 58999999999 9999999999999999999987 5
Q ss_pred EeeeecCC-CHHHHHHHH
Q 005125 692 RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~ 708 (713)
....+.|. +.+.|.+||
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 66778887 889998875
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=82.14 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCC--cccEEEEEEC--CeEeeeecCC-C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVS--SIPAFKIYKN--GSRVKEIPGH-Q 700 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~-~ 700 (713)
..+.+++|++ |++|..+.+.++++++++ +.+.|++||+++.+.++..+||. ++|++++|.+ |.......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 4567777876 999999999999999998 56999999999999999999999 9999999998 7777766776 9
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
.+.|.+||+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-08 Score=76.69 Aligned_cols=75 Identities=28% Similarity=0.370 Sum_probs=65.6
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
+.+|++ |++|+.+.|.++++++.+ +.+.++.||.++.+.++..++|.++||+++ +|+ .++.|. +.++|.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEAI 78 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHHH
Confidence 556777 999999999999999887 458899999999999999999999999875 776 378888 899999999
Q ss_pred Hhh
Q 005125 709 KLY 711 (713)
Q Consensus 709 ~~~ 711 (713)
++.
T Consensus 79 ~~~ 81 (82)
T TIGR00411 79 KKR 81 (82)
T ss_pred Hhh
Confidence 864
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-05 Score=81.96 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=49.0
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHhCCC-CHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQ------DAAQIDPN-NKEVIKGV------------KMAKAMASARLRGNLLF 504 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~------~al~~~p~-~~~~~~~~------------~~~~~~~~~~~lg~~~~ 504 (713)
..++.++..-+..+....+|++|..++- .|+.+..+ +..+-.-+ ........+-.+|.++.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 3578888888999999999999987654 44443211 00000000 00112344557999999
Q ss_pred HcccHHHHHHHHHHH
Q 005125 505 KASKYKEACYAYSEG 519 (713)
Q Consensus 505 ~~g~~~~A~~~~~~a 519 (713)
++|.|..|-+-|.+|
T Consensus 1157 qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQA 1171 (1416)
T ss_pred hccchHHHHHHHhhh
Confidence 999999999888765
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-08 Score=81.85 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=73.9
Q ss_pred hhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe-
Q 005125 619 NERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS- 691 (713)
Q Consensus 619 ~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~- 691 (713)
...|...+... ...++.|++ |++|+.+.|.++++++.+. .+.++.+|++.. .++..+++.++||+.+|.+|.
T Consensus 7 ~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~ 85 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK 85 (104)
T ss_pred hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc
Confidence 45777766554 567777888 9999999999999998864 489999999887 577888999999999999987
Q ss_pred -EeeeecCC-CHHHHHHHH
Q 005125 692 -RVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 692 -~~~~~~g~-~~~~~~~~~ 708 (713)
...++.|. +.+.|.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 86 SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCceEccCCcCHHHHHhhC
Confidence 56778888 888888875
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-08 Score=92.02 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCceEEEeec-----CchhHHHHHHHHHHHHhCCCcE--EEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee-eecCC-
Q 005125 629 PGMAVVLFCS-----KAEHKQVLQLMEQVCKRFPSVN--FLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK-EIPGH- 699 (713)
Q Consensus 629 ~~~~vv~f~~-----cg~c~~~~~~~~~l~~~~p~~~--~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~- 699 (713)
.+..+++|.+ |++|+.+.|+++++++.++.+. ++.+|.|+.+.++..++|.++|||++|++|+.+. ++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3445555644 9999999999999999997654 6666777999999999999999999999999984 89999
Q ss_pred CHHHHHHHHHhh
Q 005125 700 QCELLEKSVKLY 711 (713)
Q Consensus 700 ~~~~~~~~~~~~ 711 (713)
+.+++.++|+..
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 888999998765
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.7e-08 Score=74.08 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=57.9
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 708 (713)
+++|++ |++|+.+.|.++++. ..++.||.++.++++..++|.++|||+ +|+.++++.|. +..+|++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 566777 999999999998763 468899999999999999999999987 78999999998 446776655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-08 Score=74.34 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=56.5
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
++..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35678888899999998888888888888889999989999999999988888888887777776653
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-06 Score=77.31 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDP-------------CY------HRAHHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
....|...-.++..+..+++|...+.-.-++|. +. .......|.+....|...+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 345666666777777777777766665544432 11 11233446666677777777665554
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcccc
Q 005125 353 SSSLANQKDIAKAEALHKHLTKCNEARELKRW-NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431 (713)
Q Consensus 353 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (713)
... . ......-.+.+.. +..+..+++-+ ..+.+.+..++..+|.|.-.+..+.+.++
T Consensus 148 L~~-~--------------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 LKT-V--------------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred HHH-H--------------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 433 1 1111111111211 33333333333 25666778899999999999999999998
Q ss_pred CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Q 005125 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE 511 (713)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 511 (713)
.+|. .++.....+|.+-++.||.+.|..+|+..-+....-..... ......+.+.++.-.++|.+
T Consensus 206 ~~~e---------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~------~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 206 YYPE---------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG------KIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hCCc---------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch------hHHHHhhhhhheecccchHH
Confidence 7654 46668888999999999999999999966543221111111 12233478999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 512 ACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 512 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
|...|.+++..+|.++.+..+.|.|++-+|+..+|++..+.+++..|...
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999753
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-07 Score=94.41 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=107.7
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
+-.++...+++++|+..+++..+..|+ +...++.++...++-.+|+..+.+++...|.+...+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~--- 238 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN--- 238 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH---
Confidence 345556678999999999998887664 5566899999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
..+..+...++++.|+...++++.+.|++...|+.|+.+|..+|++++|+..+..+-
T Consensus 239 ---------~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 ---------LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 589999999999999999999999999999999999999999999999998776443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=81.96 Aligned_cols=92 Identities=10% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHhhcC-CceEEEeec--CchhHHHHHHHH---HHHHhC-CCcEEEEEeCCCc-------------HhhHHHcCCCc
Q 005125 621 RFRHFVTSP-GMAVVLFCS--KAEHKQVLQLME---QVCKRF-PSVNFLKVEVEDH-------------PYIAKSEGVSS 680 (713)
Q Consensus 621 ~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~---~l~~~~-p~~~~~~v~~d~~-------------~~~~~~~~v~~ 680 (713)
.+....... ..+++.|++ |++|+.+.+.+. .+...+ .++.++.+|++.. ..++..++|.+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 455566666 788888999 999999998774 444444 3578899998864 68899999999
Q ss_pred ccEEEEEEC--CeEeeeecCC-CHHHHHHHHHhhh
Q 005125 681 IPAFKIYKN--GSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 681 ~Pt~~~~~~--g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+||++||.. |+.+.++.|. +.+.+.++|+.+.
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 999999986 5999999999 8899999998763
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-05 Score=82.77 Aligned_cols=184 Identities=18% Similarity=0.151 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+.-...|......|..++|+.+|.+.-+.| .+-..|...|.|++|.+..+.-=.++ .-..|++.|..+..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHh
Confidence 444566777888999999999999976543 45678888999999998776533332 24578999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
.++.+.|+++|+++-. +. .++...+.++..+++.|-+- ..+ +.+|...|..+...|+.
T Consensus 871 r~Di~~AleyyEK~~~---ha--------------fev~rmL~e~p~~~e~Yv~~---~~d--~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV---HA--------------FEVFRMLKEYPKQIEQYVRR---KRD--ESLYSWWGQYLESVGEM 928 (1416)
T ss_pred hccHHHHHHHHHhcCC---hH--------------HHHHHHHHhChHHHHHHHHh---ccc--hHHHHHHHHHHhcccch
Confidence 9999999999998743 11 01111122223333322211 111 24555666666777777
Q ss_pred HHHHHHhhccccC-----------ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKF-----------CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 420 ~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+.|+.+|..|-.. ..+..........+-.+.|.+|..|...|++.+|+..|.+|-.
T Consensus 929 daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 929 DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777776665211 1111111111123456788999999999999999999987643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-05 Score=75.72 Aligned_cols=193 Identities=19% Similarity=0.138 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
..+..|+..|...++.|+|++|+..|+.+....|.. ..+...++.++.+.+++++|+...++.+.+.|.+ ..++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 456789999999999999999999999999988865 5688999999999999999999999999998877 4567
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 005125 331 HRLAMLYFRL--------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402 (713)
Q Consensus 331 ~~la~~~~~~--------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 402 (713)
+..|.+++.. .-..+|+..|+..+. ..|+.......-.. +-....++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~-ryPnS~Ya~dA~~~----------i~~~~d~L-------------- 166 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ-RYPNSRYAPDAKAR----------IVKLNDAL-------------- 166 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHH-HCCCCcchhhHHHH----------HHHHHHHH--------------
Confidence 7888876643 123456777777777 77775422111100 00011111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
...-..+|..|.+.|.+..|+..++.+++..|+.. ..-.++..+..+|..+|-.++|...-.-.-...|++.
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~-------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS-------AVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc-------chHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 12223468899999999999999999988766532 2456788899999999999999776544333445543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=95.08 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=105.0
Q ss_pred CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324 (713)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 324 (713)
+.|+.+++++...+|++...++.++...++-.+|+..+++++...|.+...+...+..+...++++.|+...++++.+.|
T Consensus 186 ~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP 265 (395)
T PF09295_consen 186 DEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP 265 (395)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 67999999987888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 325 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+....|+.|+.+|..+|+++.|+..++.+-.
T Consensus 266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 266 SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999999999988876554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-05 Score=83.46 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=150.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
....++|.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34678999999999999999999999999999999999999999988887777788888899999999999999999999
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH----
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD---- 424 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~---- 424 (713)
+|++++. .+|.. ...+.....+.+.+.|.+--+..-+..+..|...-..|..+..++......++...
T Consensus 99 ~Ye~~~~-~~P~e-------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 99 LYERANQ-KYPSE-------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHh-hCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999 99983 34445555566666666555555555556777755555555555554444333332
Q ss_pred -----HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 425 -----SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA-AQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 425 -----~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
..++.++.. .. + ...+++. ..-.++..+|++++|.+.+..- .+..+........ .
T Consensus 171 ~LA~~m~~~~l~~~-gk----~--~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~-----------~ 231 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKK-GK----I--ESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLEN-----------K 231 (932)
T ss_pred HHHHHHHHHHhccC-Cc----c--chHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHH-----------H
Confidence 223333222 00 0 0111111 1223445566677776666322 2222222222211 2
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.+..+...++|.+-.+...+++...+++
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4455556666666666666666666655
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=72.53 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=57.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
...|+..++|++|+.++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888877765554
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=81.49 Aligned_cols=93 Identities=24% Similarity=0.363 Sum_probs=84.4
Q ss_pred cccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 606 DMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 606 ~~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
..|+| ....+.+..+|-+.......+|..|+- ...|+.+..-++.+++++.+..|++|+++..|-++..++|..+|+
T Consensus 62 ~~GhG-~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 62 SKGHG-EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred HcCCc-eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeee
Confidence 45666 567777888888888888888888888 689999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEeeeecCC
Q 005125 684 FKIYKNGSRVKEIPGH 699 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~ 699 (713)
+.+|++|..++.++|+
T Consensus 141 v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 141 VALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEEcCEEEEEEeeH
Confidence 9999999999999987
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-06 Score=73.03 Aligned_cols=146 Identities=23% Similarity=0.180 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHH
Q 005125 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED 465 (713)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 465 (713)
..+....+.+...|.. .-.+.+|..+.++|++.||...|++++.-.- ..++..+..++...+..+++..
T Consensus 74 R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~f---------A~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 74 RHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIF---------AHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhcccc---------CCCHHHHHHHHHHHHhhccHHH
Confidence 3344444455555554 5567789999999999999999999876321 1466788889999999999999
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 466 AVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 466 A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
|...+++..+.+|.. ++... .+|..+...|++.+|...|+.++...| .+......+..+.++|+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~L------------l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHL------------LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchH------------HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence 999999999988764 33333 479999999999999999999999998 577778889999999998
Q ss_pred HHHHHHHHHHHH
Q 005125 544 EKAVEDCTAALI 555 (713)
Q Consensus 544 ~~A~~~~~~al~ 555 (713)
++|..-+....+
T Consensus 210 ~ea~aq~~~v~d 221 (251)
T COG4700 210 REANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHHHH
Confidence 888776655443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-06 Score=75.20 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 482 (713)
..|...+.+|.+ .+.++|+.++++++++..+...-. ..+..+..+|.+|... .++++|+.+|+++-+.......
T Consensus 75 t~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~----~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees 149 (288)
T KOG1586|consen 75 TTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFT----MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES 149 (288)
T ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHH----HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence 444444444444 488888888888887665432211 2344566789999875 8999999999999876544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS-------VLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
.-. .-.++...+......++|.+|+..|++.....-++. ..++.-|.|++...+.-.+...+++..+
T Consensus 150 ~ss------ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 150 VSS------ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred hhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 111 011222466677788999999999999887655543 3456678899998999999999999999
Q ss_pred hCCCChHHHH
Q 005125 556 VMPSYSKARL 565 (713)
Q Consensus 556 ~~p~~~~a~~ 565 (713)
++|.+...+-
T Consensus 224 ~dP~F~dsRE 233 (288)
T KOG1586|consen 224 LDPAFTDSRE 233 (288)
T ss_pred cCCcccccHH
Confidence 9999887665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-06 Score=70.04 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRLAML 336 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 336 (713)
.+-..|..+...|+.+.|++.|.+++.+.|..+.+|++++.++...|+.++|++.+++++++.-+. -.++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 466778889999999999999999999999999999999999999999999999999999996554 4578899999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|..+|+.+.|...|+.+.+ +....
T Consensus 125 yRl~g~dd~AR~DFe~AA~-LGS~F 148 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQ-LGSKF 148 (175)
T ss_pred HHHhCchHHHHHhHHHHHH-hCCHH
Confidence 9999999999999999988 66654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-05 Score=75.34 Aligned_cols=186 Identities=13% Similarity=0.037 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGADSA--PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
...++..+......|+|.+|+..|+.+....|... ..+...++.++.+.+++++|+...++-+.+.|.+.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------- 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------- 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-------
Confidence 35577788888889999999999999999887653 578889999999999999999999999999997654
Q ss_pred cHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHH---HHHHHH--HHHHHHHHHHHHHcccHHHH
Q 005125 446 GAYLLIVRAQVYIAAGR--------FEDAVKTAQDAAQIDPNNKEVIKG---VKMAKA--MASARLRGNLLFKASKYKEA 512 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~---~~~~~~--~~~~~~lg~~~~~~g~~~~A 512 (713)
..++++..|.+++..=+ ..+|+..|+..+...|+..-+-.. +..+.. ..--...|..|.+.|.+..|
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 57788999998876322 367888999999999987543322 222221 22234689999999999999
Q ss_pred HHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 513 CYAYSEGLEHEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 513 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|++
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 99999999987765 4678888899999999999987655444444544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=72.08 Aligned_cols=67 Identities=31% Similarity=0.454 Sum_probs=62.5
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+..++...++|++|++++++++.++|+++..|..+|.++..+|++++|+..|+++++..|++..+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999998876643
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-07 Score=73.24 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
....+.+|.+ |++|..+.++++++++.+|++.+..+|+++.++++..++|.++|+|++ +|+.+.. |. +.++|.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~~ 87 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEIL 87 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHHh
Confidence 3445666777 999999999999999999999999999999999999999999999964 8987774 66 555543
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-06 Score=73.30 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
..+..++..|...+..|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.+ ..++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456789999999999999999999999999998864 5788999999999999999999999999999987 5689
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHhhhhccccH
Q 005125 331 HRLAMLYFRLGE---------------AEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 331 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~~p~~~ 362 (713)
+..|.+++.+.. ...|+..|++.+. ..|+..
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~-~yP~S~ 133 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR-RYPNSE 133 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH-HCcCCh
Confidence 999999999877 8889999999999 888875
|
|
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=76.68 Aligned_cols=89 Identities=12% Similarity=0.198 Sum_probs=71.1
Q ss_pred hHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-cHhhHH-HcCCCcccEEEEEECC
Q 005125 620 ERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-HPYIAK-SEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-~~~~~~-~~~v~~~Pt~~~~~~g 690 (713)
..|..++. ....+++.|++ |++|+++.|.+++++..+. ++.++.||++. ...++. .++|..+||+++|.+|
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 46666553 35678888888 9999999999999998874 48899999997 566665 5899999999999876
Q ss_pred -eEeeeecCC--CHHHHHHHH
Q 005125 691 -SRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 691 -~~~~~~~g~--~~~~~~~~~ 708 (713)
.......|. +.+.|..||
T Consensus 89 ~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 89 SRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCceeccCCCCCHHHHHhhC
Confidence 456678884 888888775
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-07 Score=87.68 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=69.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
+..+++|++ |++|..+.+.+++++..+|.+.+..+|++..+.++..++|.++||++++++|.. +.|. +.++|.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHH
Confidence 445555888 999999999999999888889999999999999999999999999999988864 8888 8899999
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
+|..
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 9875
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.1e-05 Score=69.71 Aligned_cols=243 Identities=14% Similarity=0.129 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINS-------------SK------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
...|...-.++.+...+++|..-+...-++|. +. .......|.+...+|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34566666677777888888777666555432 21 123344567777888888887766655
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
...- ..+-..+......+..++.+++-+. ...+.....+..++.|.-.+..+.+.++.+|
T Consensus 149 ~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl~-------------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVV-------SKILANLEQGLAEESSIRLWRKRLG-------------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHH-------HHHHHHHHhccchhhHHHHHHHHHH-------------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 4321 1122223333334666666766555 3455566677778889999999999999998
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
+..+.....+|.+-+..|+.+.|..+|++.-+... .+.+......++.+.+.+|.-.+++.+|...|.+++..+|.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~----kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ----KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 77788899999999999999999999996643221 22222345567888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC---HHHHHHHHHHH
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN---SVLLCNRAACR 537 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 537 (713)
++.+.+ +.|.++.-.|+..+|++..+.+++..|.. -.+.+||..+|
T Consensus 285 ~~~a~N------------nKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 285 NAVANN------------NKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred chhhhc------------hHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 998887 79999999999999999999999999964 23455555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-06 Score=69.55 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-- 526 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 526 (713)
.+-..|..+...|+.+.|++.|.+++.+.|..+.+++ +.+..+.-+|+.++|++.+++++++.-..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayN------------NRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYN------------NRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhc------------cHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 3445688899999999999999999999999999998 89999999999999999999999986544
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 527 --SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 527 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
-.++..+|.+|..+|+-+.|...|+.|-++...+..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 457889999999999999999999999999876644
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=92.55 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=66.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATY---RSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
.+|+++++++++|..|+..|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999854 9999999999999999999999999973
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=74.83 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=72.3
Q ss_pred chhHHHHHhhcCCceEEEeec----Cc---hhHHHHHHHHHHHHhCCCcEEEEEeCC-----CcHhhHHHcCCC--cccE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS----KA---EHKQVLQLMEQVCKRFPSVNFLKVEVE-----DHPYIAKSEGVS--SIPA 683 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~----cg---~c~~~~~~~~~l~~~~p~~~~~~v~~d-----~~~~~~~~~~v~--~~Pt 683 (713)
+...|...+.....++|.|++ || .|+.+.|-+...+ ..+.+.+||++ +...|+.+++|. +.||
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa---~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPT 83 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT---DDLLVAEVGIKDYGEKLNMELGERYKLDKESYPV 83 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc---CceEEEEEecccccchhhHHHHHHhCCCcCCCCE
Confidence 456888888888888888888 77 6666666554433 24999999994 567899999999 9999
Q ss_pred EEEEECCe--EeeeecCC--CHHHHHHHHHhh
Q 005125 684 FKIYKNGS--RVKEIPGH--QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~~~g~--~~~~~~g~--~~~~~~~~~~~~ 711 (713)
+.+|++|. ......|. +.+.|.+||.+.
T Consensus 84 l~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 84 IYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999985 44567773 899999999864
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-07 Score=92.24 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=65.5
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL---LCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 476 ~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
.+|+++.++. ++|.+|+.+|+|++|+.+|+++++++|++..+ |+|+|.+|..+|++++|+.++++
T Consensus 70 ~dP~~a~a~~------------NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAV------------NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5788888888 89999999999999999999999999999854 99999999999999999999999
Q ss_pred HHHh
Q 005125 553 ALIV 556 (713)
Q Consensus 553 al~~ 556 (713)
|+++
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 9998
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=69.18 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=31.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
..|++++|+..|++++..+|++..++. .+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARL------------LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHH------------HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 344555555555555555555555444 3555555555555555555555555554444444333
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=70.51 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=119.3
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
+.=+++.++.-..+.+. ..|.. ...+.++....++|++.+|...|++++.---.+.+..+..++...+..++
T Consensus 68 q~ldP~R~~Rea~~~~~-~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 68 QKLDPERHLREATEELA-IAPTV-------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HhcChhHHHHHHHHHHh-hchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 33344444444444444 44543 56778888888999999999999998875444446788889999999999
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+.+|...+++..+..|.. ..++....+|.+|...|++.+|...|+.++...|.......
T Consensus 140 ~A~a~~tLe~l~e~~pa~--------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~------------- 198 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAF--------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY------------- 198 (251)
T ss_pred HHHHHHHHHHHhhcCCcc--------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH-------------
Confidence 999999999999888754 45667888899999999999999999999999988654332
Q ss_pred HHHHHHHcccHHHHHHHHHHHhc
Q 005125 499 RGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
.+..+.++|+.++|..-|....+
T Consensus 199 Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 199 YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcchhHHHHHHHHHHH
Confidence 68888899988888776655443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-06 Score=79.70 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 333 (713)
.-+|..|..++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++-.|++ +++++.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 448999999999999999999999999999976 6799999999999999999999999999988776 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+...+|+.++|...|+++++ ..|...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k-~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK-RYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-HCCCCH
Confidence 9999999999999999999999 888875
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-05 Score=78.88 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRA-IAINSS--------KATYRSNKSAALIGLGRQIEALVECKEAIR-I-- 322 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-- 322 (713)
..+.+.+++..+..++..|+|.+|.+.+... +...|. ...+|+++|.+++++|.|.-+..+|.+|+. .
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888876543 222332 234567888888888888888888888885 1
Q ss_pred ------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 323 ------DP---------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 323 ------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.| ...+.+++.|..|...|++-.|.++|.++.. ....++
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~-vfh~nP 369 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH-VFHRNP 369 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH-HHhcCc
Confidence 11 2356788888888888888888888888887 555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00035 Score=68.94 Aligned_cols=269 Identities=17% Similarity=0.087 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKA--TYRSNKSAALIGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYF 338 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 338 (713)
-..-|.+....||-..|...-.++-++-..+. -++..-+..-...|+++.|.+-|+-++. +|+ ..-.+..|-.--.
T Consensus 87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq 165 (531)
T COG3898 87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence 34456666678899999998888875544443 3444456677778999999999998875 333 1222333333344
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc---CCCChH--HHHHHHHHHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF---GADSAP--QVYALQAEAL 413 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~--~~~~~la~~~ 413 (713)
.+|+.+.|..+-+++.. ..|.-. .............|+|+.|++..+..... .++... .+-.+-+...
T Consensus 166 r~GareaAr~yAe~Aa~-~Ap~l~------WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 166 RLGAREAARHYAERAAE-KAPQLP------WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred hcccHHHHHHHHHHHHh-hccCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 78999999999999998 888764 33344455667789999999998866543 222111 1111112222
Q ss_pred H-HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 414 L-RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 414 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
. -.-+...|...-.+++++.|+... .-..-+..++..|+..++-..++.+.+..|.- +.+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvP----------aav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~------- 300 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVP----------AAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIAL------- 300 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccch----------HHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHH-------
Confidence 2 223577888888888888887544 34456888999999999999999999988864 3332
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH---hccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEG---LEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..++.+.|+ .++.-++++ ..+.|++.+....++..-+.-|++..|....+.+..+.|...-..+
T Consensus 301 -------lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lL 367 (531)
T COG3898 301 -------LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLL 367 (531)
T ss_pred -------HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHH
Confidence 223334444 444444443 4568999999999999999999999999999999999997654444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=81.27 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
.-.|+.|.-+++.|+|.+|...|..-++..|+.. .+++ -||.+++.+|+|++|...|..+++-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y------------WLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY------------WLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHH------------HHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 3378899999999999999999999999999864 4444 499999999999999999999999887
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 525 YN---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 525 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+. +++++.||.|...+|+.++|...|+++++..|+...+..
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 65 789999999999999999999999999999999877655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.7e-06 Score=71.44 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
..+..++..|...+..|+|++|++.|+......|-.+.+-. +...+|.++++.++|++|+..+++-++++|
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~q---------AqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQ---------AQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 35668899999999999999999999999998887654432 223699999999999999999999999999
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 525 YNS---VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 525 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.++ .+++.+|.+++.+.. ..+.... ..+-.......|...|++.++..|++.-+..+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~-----~~~~~~~--~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDE-----GSLQSFF--RSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhh-----hHHhhhc--ccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 874 578889988887765 1122222 22222233357888888888888888766544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=76.72 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHhccCCCCHHHHHH
Q 005125 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA----------SKYKEACYAYSEGLEHEAYNSVLLCN 532 (713)
Q Consensus 463 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~ 532 (713)
|+.|.+.++.....+|.+.+.+. +-|.++..+ .-+++|+.-|++||.++|+...++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~------------~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLT------------NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHH------------HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHH------------HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 68899999999999999998877 344444443 45688999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 533 RAACRSKLGQYEKAVEDCTAALIVMPSY--SKARLEAAIQDYEMLIREIPGNEEVGRALFEA 592 (713)
Q Consensus 533 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 592 (713)
+|.+|..++. +.|+. ...++++|..+|++|...+|+|......|.-+
T Consensus 75 lGnA~ts~A~-------------l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAF-------------LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHH-------------H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHh-------------hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999987663 12222 22334667778888888888887777666544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-07 Score=77.56 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=63.6
Q ss_pred hhHHHHHhhcCC-ceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCC--CcHhhHHHcCCCcccEEEEEEC
Q 005125 619 NERFRHFVTSPG-MAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVE--DHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 619 ~~~~~~~l~~~~-~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
...|...+.... .+++.|++ |++|+.+.|.|++++..+. .+.|..+|++ ..+.++..++|.++||+.+|+.
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECC
Confidence 456777765544 67777888 9999999999999988652 3788888864 5778999999999999999998
Q ss_pred CeEeeeecCC
Q 005125 690 GSRVKEIPGH 699 (713)
Q Consensus 690 g~~~~~~~g~ 699 (713)
|. .....|.
T Consensus 88 ~~-~~~~~~~ 96 (114)
T cd02992 88 FS-KEATDGL 96 (114)
T ss_pred CC-ccCCCCC
Confidence 87 4445444
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-06 Score=82.63 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=76.0
Q ss_pred cccccceeecchhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
.||. +..+...+.|...+.... .+|+.|+. +..|..+...|..|+.+||.+.|++|.....+ +...|.+..+|
T Consensus 123 ~fG~-v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 123 RFGE-VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp ---S-EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred cCce-EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCC
Confidence 4774 456666678888775432 35556777 88999999999999999999999999998887 66788999999
Q ss_pred EEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 683 AFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
|+++|++|..++.++|. +.+.|+.+|.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999988765 456788888766
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.1e-07 Score=82.51 Aligned_cols=96 Identities=28% Similarity=0.469 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+-+...|+.++....|..|+.+|.++|.++|..+.+|.+.+.||+++.+|+.+...++++++++|+...+++.+|.++..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 005125 340 LGEAEKAVSHYKKSSS 355 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~ 355 (713)
...|.+|+.++.++..
T Consensus 91 s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYS 106 (284)
T ss_pred hccccHHHHHHHHHHH
Confidence 9999999999999976
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=90.88 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=75.3
Q ss_pred chhHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH-hh-HHHcCCCcccEEEEEE
Q 005125 618 SNERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP-YI-AKSEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~-~~-~~~~~v~~~Pt~~~~~ 688 (713)
+..+|...+. ....+++.|++ |++|+.+.|.|+++++++. ++.|+.||+|..+ .+ ...++|.++|||+||+
T Consensus 357 ~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk 436 (463)
T TIGR00424 357 SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFP 436 (463)
T ss_pred CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEE
Confidence 4457888764 45677888999 9999999999999999884 3889999988653 34 4689999999999999
Q ss_pred CCe-EeeeecC-C-CHHHHHHHHHhh
Q 005125 689 NGS-RVKEIPG-H-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~-~~~~~~g-~-~~~~~~~~~~~~ 711 (713)
+|. ....+.| . +.+.|..||+..
T Consensus 437 ~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 437 KHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 985 3345664 4 999999999754
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00016 Score=66.40 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINS-----S-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HR 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 328 (713)
.+..-|+.|....+|..|=..|-++-+..- + -+..|...+.||.. .+..+|+.++++++++..+. +.
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 456667788888888888888888866521 1 24455555666554 59999999999999986554 33
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 329 AHHRLAMLYFRL-GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 329 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.+..+|.+|... .++++|+.+|+++-+ ....+......-..++..
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae-~yk~ees~ssANKC~lKv--------------------------------- 160 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAE-YYKGEESVSSANKCLLKV--------------------------------- 160 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHH-HHcchhhhhhHHHHHHHH---------------------------------
Confidence 455788888765 888889999988877 444433222222233333
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
+..-..+++|.+|+..|++.....-++...-+ ..-..++.-|.|++...+.-.+...+++-.+++|...+...
T Consensus 161 --A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy---s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 161 --AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY---SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccchHHHh---HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 44444445555555555554332222111000 01224455678888888888888888888889998766553
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=95.82 Aligned_cols=94 Identities=18% Similarity=0.350 Sum_probs=82.9
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+......++.|++ |++|+++.|.+.+++..+ +.+.++.||++..+.++..++|.++||+.+|++|.
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 345788888777888888999 999999999999877543 56999999999999999999999999999999998
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+ ++.|. +.+.|.+||++..
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHhh
Confidence 88 88898 9999999998763
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0009 Score=73.08 Aligned_cols=295 Identities=10% Similarity=-0.019 Sum_probs=173.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|+..-+....|..++++|+.++|..+++..-...+++...+..+-.+|..++++++|..+|++++..+|. .+..+.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 455556667777888888888888887777766667777778888888888888888888888888888888 7777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHcC-CCChHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK----RWNDLLKETQNVISFG-ADSAPQVYAL 408 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~-p~~~~~~~~~ 408 (713)
-.+|.+.+.|.+-.+.--+..+ .-|..+.-...+...+..+....... -..-|....++.+... +-....-...
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 7888887777664444444444 55555421111111111111000000 1112333444555444 2221111222
Q ss_pred HHHHHHHccCHHHHHHHhhccc-cCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-
Q 005125 409 QAEALLRLQRHQEAHDSYNKSP-KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG- 486 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 486 (713)
.-.++..+|++++|.+.+..-+ +..+. .+..........+...+++.+-.+...+++..++++...+.-
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~---------~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~s 266 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTS---------ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDS 266 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccc---------cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHH
Confidence 2456778899999999984322 11111 223344456777888999999999999999999987211110
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS-VLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+..+....--...+..+-..+..+..++...+.+......+ -++..+-.-+...|+.+++...|-+-+...|-
T Consensus 267 v~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpc 340 (932)
T KOG2053|consen 267 VFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPC 340 (932)
T ss_pred HHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcH
Confidence 00000000000123334445566666666677666533333 33444444446789999988777665554444
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=90.32 Aligned_cols=94 Identities=15% Similarity=0.213 Sum_probs=76.4
Q ss_pred chhHHHHHhh---cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-CcHhhHH-HcCCCcccEEEEEE
Q 005125 618 SNERFRHFVT---SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-DHPYIAK-SEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~---~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-~~~~~~~-~~~v~~~Pt~~~~~ 688 (713)
+.++|...+. ....+++.|++ |++|+.+.|.|+++++.+. ++.|+.+|++ ....++. .++|.++|||+||+
T Consensus 351 t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 351 SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 4457776653 46678888999 9999999999999999873 4999999999 7777776 69999999999999
Q ss_pred CCeE-eeeecC-C-CHHHHHHHHHhh
Q 005125 689 NGSR-VKEIPG-H-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~-~~~~~g-~-~~~~~~~~~~~~ 711 (713)
+|.. ...+.| . +.+.|..||+..
T Consensus 431 ~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 431 KNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8763 334654 3 999999999864
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=95.41 Aligned_cols=94 Identities=24% Similarity=0.451 Sum_probs=83.4
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+......++.|++ |++|+.+.|.+.++++.+ +.+.|+.||++..+.++..++|.++||+.+|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 456788888777788888999 999999999999887654 45999999999999999999999999999999998
Q ss_pred E-eeeecCC-CHHHHHHHHHhh
Q 005125 692 R-VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~-~~~~~g~-~~~~~~~~~~~~ 711 (713)
. +..+.|. +.+.|.+||.+.
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHh
Confidence 8 7889998 999999999875
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-07 Score=92.25 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=86.6
Q ss_pred eecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
...+.+.|...+....-.++.|++ ||+|+.+.|-+++.+... +.+..++||+.+...++.+++|.+.||+.+|+
T Consensus 28 l~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 28 LVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFR 107 (493)
T ss_pred EEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEe
Confidence 334567899999888999999999 999999999999877553 57999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|.......|. ..+.|..|+++..
T Consensus 108 nG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 108 NGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred cCCcceeccCcccHHHHHHHHHhcc
Confidence 99986778888 9999999998753
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-07 Score=71.22 Aligned_cols=62 Identities=31% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 294 TYRSNKSAALIGLGRQIEALVECKEAIRI---D----PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.+|..+|++++|+++|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444444444444444433 0 11133444555555555555555555555444
|
... |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=66.08 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=51.8
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+.+|++ |++|..+.++++++...++++.+..+|+++.++++..+++.++||+++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 3566777 999999999999999888889999999999999999999999999754 6654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-06 Score=72.75 Aligned_cols=87 Identities=29% Similarity=0.317 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-- 342 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 342 (713)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++||.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999988887644 4678888889999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHhhhhccccH
Q 005125 343 ---------AEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 343 ---------~~~A~~~~~~al~~~~p~~~ 362 (713)
|++|..+|++|.. .+|.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~-~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD-EDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-H-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHh-cCCCcH
Confidence 7788889999999 999874
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.34 E-value=6e-07 Score=70.59 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAI---NS----SKATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
|.-+.++..+|.+|...|+|++|+.+|++++++ .+ ..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999976 22 23668999999999999999999999999976
|
... |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.5e-06 Score=64.77 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHHH
Q 005125 639 KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSVK 709 (713)
Q Consensus 639 cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~~ 709 (713)
|++|+.+.|.++++.++++ .+.++.+| + +..+..++|.++||+++ +|+.+ +.|. ..++|.++|+
T Consensus 10 C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 10 CANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEILK 76 (76)
T ss_pred CcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHhC
Confidence 9999999999999999985 36776666 2 33467799999999988 89887 7775 5588888763
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=93.08 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
...|...+ .....+++.|++ |++|+.+.|.+++++..+. .+.++++|++....++..++|+++||+.+|+.|..
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER 443 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc
Confidence 35677764 445668888998 9999999999999987763 48899999999999999999999999999998876
Q ss_pred e-eeecCC-CHHHHHHHHHhhh
Q 005125 693 V-KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~-~~~~g~-~~~~~~~~~~~~~ 712 (713)
+ .++.|. +.+.|.++|+++.
T Consensus 444 ~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 444 TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred ceeEecCcCCHHHHHHHHHHcC
Confidence 5 478898 9999999998864
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00027 Score=72.44 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 306 LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 306 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
..+...-++..++|++++|+.+.+|..||.-. ..-..+|.++|+++++
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVK 228 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHH
Confidence 34445555555555555555555555554311 1224455555555554
|
The molecular function of this protein is uncertain. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=87.80 Aligned_cols=105 Identities=31% Similarity=0.390 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+.+-..|..++.-++|+.|+..|.+||+++|+.+.++.+++.++...+++..|+..+.+|++++|....+|++.|.++..
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
++++.+|+..|+.... +.|++....
T Consensus 85 l~~~~~A~~~l~~~~~-l~Pnd~~~~ 109 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKK-LAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHHHhhh-cCcCcHHHH
Confidence 9999999999999999 999986433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0004 Score=64.23 Aligned_cols=204 Identities=13% Similarity=0.046 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALIGLGRQIEALVECKEAIRI-----DPCYHR 328 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 328 (713)
..|..-+..|....+|++|..++.+|.+-..++ +.++-..+.....+..+.++..+|++|..+ .|+-+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 356777788888999999999999999765443 345566677777889999999999999887 344444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC----CC-ChH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG----AD-SAP 403 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~-~~~ 403 (713)
.-...|--....-++++|+..|++++. +-..+......+..+-..+.++.....|.+|-..+.+-.... .- ..-
T Consensus 112 maleKAak~lenv~Pd~AlqlYqrala-vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALA-VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH-HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 444445555677889999999999999 555444444555666667778888899998877766543321 11 111
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
..+.....+|+...+|..|..+|+..-++.. . ....+...+-+|-..| ..|+.++....+.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~-f-----~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPA-F-----LKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCcc-c-----cChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 3455556677778899999999999655421 1 1112333444444333 5677777665553
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=73.48 Aligned_cols=92 Identities=29% Similarity=0.385 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 495 SARLRGNLLFKASKYKEACYAYSEGLEH--------EAYN----------SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 495 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
.+...|+-++++|+|.+|...|+.|+.. .|.. ...+.|.+.|++..|+|-++++.+..++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3447899999999999999999999843 3433 456889999999999999999999999999
Q ss_pred CCCChHHHH------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 557 MPSYSKARL------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 557 ~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
+|++..|++ .+|.++|.++|+++|.-..+.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999998 899999999999999876543
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.4e-06 Score=89.92 Aligned_cols=100 Identities=10% Similarity=0.181 Sum_probs=80.5
Q ss_pred ceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHH---HHHHHhCCCcEEEEEeCCC----cHhhHHHcCCC
Q 005125 613 LVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLM---EQVCKRFPSVNFLKVEVED----HPYIAKSEGVS 679 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p~~~~~~v~~d~----~~~~~~~~~v~ 679 (713)
.+.+.+.+++.+.+.. .+.+++.|++ |++|+.+.+.+ +++.+.+.++.++++|+++ ..+++++++|.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 3445566677765532 4567888999 99999998875 6777777789999999985 36788999999
Q ss_pred cccEEEEEE-CCeE--eeeecCC-CHHHHHHHHHhhh
Q 005125 680 SIPAFKIYK-NGSR--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++||+++|. +|+. +.++.|. +++++.++|++..
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999996 7887 4789998 9999999999864
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.004 Score=63.47 Aligned_cols=342 Identities=14% Similarity=0.025 Sum_probs=192.2
Q ss_pred CCCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC---CchhhhHhh------cCCCC----HHHHHHHHH
Q 005125 201 HCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS---GEFPQCISS------LNKLD----PEELKFMGN 267 (713)
Q Consensus 201 ~~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~---~~a~~~~~~------~~~~~----~~~~~~lg~ 267 (713)
..|-.+.++|++++..+...|... .++. ....+|.++.... +-|...+++ .-|.. -++...++.
T Consensus 20 ~~PPkIkk~IkClqA~~~~~is~~-vear--t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~ 96 (629)
T KOG2300|consen 20 SGPPKIKKCIKCLQAIFQFQISFL-VEAR--THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAH 96 (629)
T ss_pred cCChhHHHHHHHHHHHhccCChHH-HHHH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHH
Confidence 445557799999999888776322 2211 3334666555444 446666655 12222 356677888
Q ss_pred HHHHhc-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC---CHHHHHHHHH--H
Q 005125 268 EAYNKA-RFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI-DPC---YHRAHHRLAM--L 336 (713)
Q Consensus 268 ~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---~~~~~~~la~--~ 336 (713)
.|.... .+..|...+++++++....+ ..++.++.++.-..++..|++.+.--.+- ++- +....+.+.. +
T Consensus 97 lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~l 176 (629)
T KOG2300|consen 97 LHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLML 176 (629)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHH
Confidence 887776 78888888999988865544 35567788888888888888763321111 110 0111111111 1
Q ss_pred HHHc---CCHHHHHHHHHHHhhhhc--cccHHHHHHHH------------------------------------------
Q 005125 337 YFRL---GEAEKAVSHYKKSSSLAN--QKDIAKAEALH------------------------------------------ 369 (713)
Q Consensus 337 ~~~~---g~~~~A~~~~~~al~~~~--p~~~~~~~~~~------------------------------------------ 369 (713)
+... .+.+.+...+.+..+... |.+.+....+.
T Consensus 177 l~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~i 256 (629)
T KOG2300|consen 177 LIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKI 256 (629)
T ss_pred HHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccc
Confidence 1111 112222222222222000 10000000000
Q ss_pred ---------HH-----------HHHHHHHHHhhcHHHHHHHHHHHHHcCCC------ChH-------HHHHHHHHHHHHc
Q 005125 370 ---------KH-----------LTKCNEARELKRWNDLLKETQNVISFGAD------SAP-------QVYALQAEALLRL 416 (713)
Q Consensus 370 ---------~~-----------~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~-------~~~~~la~~~~~~ 416 (713)
.| +.-..--+..|-+++|.++.++++..... ..+ ..+..+..+-.-.
T Consensus 257 lgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~ 336 (629)
T KOG2300|consen 257 LGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVR 336 (629)
T ss_pred cCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00001112346777777777777654211 111 2334456666678
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
|++.+|++....+.+..........-....+.+++.+|......+.++.|...|..|.+.-... +.+.. .-
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~--------~n 407 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAF--------CN 407 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHH--------HH
Confidence 8999888887776544332222111122457788999999999999999999999998864332 22221 12
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYN----------SVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.++|..|.+.|+-+.-.+.++. +.|.+ +.+++..|...+..+++.||...+.+.+++.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2788888887775554444443 33332 4567777888888999999999999888876
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=67.58 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
..|..-+.+|...++|++|..++.++.+ ...++.........+-..+....++..|.++...++++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------------- 97 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------------- 97 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------
Confidence 3445556677777788888888888776 55555444444444455555556666677776666665
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
...|...|..+-|-..+++|-+ .....+.++|+.+|++++.+-.........
T Consensus 98 --s~lY~E~GspdtAAmaleKAak-------------------------~lenv~Pd~AlqlYqralavve~~dr~~ma- 149 (308)
T KOG1585|consen 98 --SELYVECGSPDTAAMALEKAAK-------------------------ALENVKPDDALQLYQRALAVVEEDDRDQMA- 149 (308)
T ss_pred --HHHHHHhCCcchHHHHHHHHHH-------------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHH-
Confidence 4456666766666666665533 234557899999999988765444333221
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH------EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
...+...+.++.+..+|++|-..+.+-... .+.....+...-.+|+...+|..|..+++..-++
T Consensus 150 -----~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 150 -----FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred -----HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 122335888999999999998887764322 2333445666666777777999999999876654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.7e-05 Score=69.14 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAI--------NSSK----------ATYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
..++...|+.++..|+|.+|...|..|+.. .|.. ...+.+++.|+...|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999753 4443 3477899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 321 RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 321 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
..+|.+..+|+..|.++...-+..+|...|.++++ ++|.-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~-ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE-LDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cChhhH
Confidence 99999999999999999999999999999999999 998753
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.2e-06 Score=77.09 Aligned_cols=92 Identities=22% Similarity=0.362 Sum_probs=78.9
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHh----CC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKR----FP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~----~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
++...+.....+++-|++ |...+.+.|+|++.++. +| .+++..||+|....|+..|.|...||+.+|++|..
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch
Confidence 445556666677777999 99999999999997754 56 48999999999999999999999999999999998
Q ss_pred ee-eecCC-CHHHHHHHHHhhh
Q 005125 693 VK-EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~-~~~g~-~~~~~~~~~~~~~ 712 (713)
.. +..|. +.+.|.++|++..
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHh
Confidence 87 78888 9999999998753
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=77.47 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------cHhhHHHcCCCcccEEEEEEC-CeEee
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------HPYIAKSEGVSSIPAFKIYKN-GSRVK 694 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~~ 694 (713)
....++.|++ |++|+.+.|.++++.++|+ +.++.|++|. ...++..+||..+|+++++.. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 3456777888 9999999999999999985 6777777765 246888999999999999986 66665
Q ss_pred ee-cCC-CHHHHHHHHHhh
Q 005125 695 EI-PGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~-~g~-~~~~~~~~~~~~ 711 (713)
.+ .|. +.++|.+.|...
T Consensus 245 ~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 54 487 999999888654
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0019 Score=67.55 Aligned_cols=298 Identities=13% Similarity=0.079 Sum_probs=171.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 005125 265 MGNEAYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLGRQIEALVECKEAIRID--------PCYHRAHHRLAM 335 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 335 (713)
.+.+..+.|+|+.-. ..+...+ +.....+..+......++++++..+.+++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~l~----~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLE----EYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHH----HHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356677888888832 3332222 233566666777778889998888888876541 111111111112
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHH--cCCCChHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE-ARELKRWNDLLKETQNVIS--FGADSAPQVYALQAEA 412 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~la~~ 412 (713)
-+..+.+.+++......... . +.. .......|-.+... ......|+.-+..=.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~-~-~~~--~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQ-N-PQD--LKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcc-c-HHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 22233344444444422211 0 110 11111112222111 1112223332222222222 1244445788889999
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-----H-HHH-
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID-PNN-----K-EVI- 484 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-----~-~~~- 484 (713)
..+.|.++.|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+... ... . ...
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~------~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSES------LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccC------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 99999999999999998876532211 145577888999999999999999999988721 111 0 000
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005125 485 --------------KGVKMAKAMASARLRGNLLFKA------SKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544 (713)
Q Consensus 485 --------------~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 544 (713)
..........++..+|...... +..++++..|.++++.+|....+|+.+|..+..+-+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence 1111122345566677777777 88999999999999999999999999998776543322
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCC
Q 005125 545 KAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPG 581 (713)
Q Consensus 545 ~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~ 581 (713)
.....-. ......-+...|+..|-+++...++
T Consensus 310 ~~~~~~~-----~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 310 PREKEES-----SQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccc-----chhHHHHHHHHHHHHHHHHHhhCCC
Confidence 2110000 0012333447889999999998887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00017 Score=74.57 Aligned_cols=101 Identities=20% Similarity=0.121 Sum_probs=81.7
Q ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 262 LKFMGNEAY-NKARFEDALALYDRAIAINSSKA--TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 262 ~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+..++..|. .+|+.-+|+.++..++-..|... .++..+|.++.+.|...+|--.+..|+.-.|....-++.+|.++.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 444554444 57899999999999988877543 477888999999999999988888888887777777889999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
.++++...+.+|..+.+ .+|....
T Consensus 295 ml~~~N~S~~~ydha~k-~~p~f~q 318 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQ-ARPGFEQ 318 (886)
T ss_pred HHhhhhhhhhhhhhhhc-cCcchhH
Confidence 99999999999998888 7776543
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=68.64 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=56.7
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcH-hhHHHcCCCc--ccEEEEEE-CCeEe
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHP-YIAKSEGVSS--IPAFKIYK-NGSRV 693 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~-~~~~~~~v~~--~Pt~~~~~-~g~~~ 693 (713)
.+........++++.|++ |++|+.+.|.+.+..... ....|+.|+++..+ .+...+++.+ +||++||. +|+.+
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 334444556778888988 999999999999876543 33456667776554 3456788876 99999995 89998
Q ss_pred eeecC
Q 005125 694 KEIPG 698 (713)
Q Consensus 694 ~~~~g 698 (713)
.++.+
T Consensus 91 ~~~~~ 95 (117)
T cd02959 91 PEIIN 95 (117)
T ss_pred hhhcc
Confidence 85443
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00043 Score=70.22 Aligned_cols=289 Identities=15% Similarity=0.114 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC----------C
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI-----DP----------C 325 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p----------~ 325 (713)
.+...+...+..+.|+..+++++..-.++..+...+++.+.+.+.......-....+....+ .| .
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~ 98 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQ 98 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhc
Confidence 45556666778899999999998888887777666677776554433222222333322222 11 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH---HHHHc---CC
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQ---NVISF---GA 399 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~al~~---~p 399 (713)
....+++.|.+|+...++..|++........+.|-..... ....+.....+......++|+.++. +.+.. .+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~a--a~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSA--ASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2456788888988888888888876666552222211111 1111222223333344444443322 22111 11
Q ss_pred C---------------Ch-----------HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHH
Q 005125 400 D---------------SA-----------PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVR 453 (713)
Q Consensus 400 ~---------------~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 453 (713)
. +. ..+.......|+.+.+...+..-.+.++.+.. ..+..+...
T Consensus 177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~----------~s~~~l~LK 246 (696)
T KOG2471|consen 177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ----------DSSMALLLK 246 (696)
T ss_pred cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC----------CCcHHHHHH
Confidence 0 00 01222223344555555555555555544433 345678888
Q ss_pred HHHHHHcCCHHHHHHHHHHH-HHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-c------
Q 005125 454 AQVYIAAGRFEDAVKTAQDA-AQIDPN---NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-H------ 522 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~a-l~~~p~---~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~------ 522 (713)
+..++..|++.+|.+.+... +...|. .+.... ...+.++|.++++.|.|.-++.+|.+|++ .
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~-------cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSS-------CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhh-------heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887643 122222 111111 11234899999999999999999999995 1
Q ss_pred --CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005125 523 --EA---------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568 (713)
Q Consensus 523 --~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A 568 (713)
.| ...+.++|.|..|...|+.-.|.++|.++....-.++..|+.-|
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 11 23678999999999999999999999999999999999998443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=74.91 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAIN---SS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.++-+..-|+.|++..+|..|+.+|.++|+.. |+ ++..|.++|.+...+|+|..|+..+.+++.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 44568899999999999999999999999874 33 356889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
|.|++.+.++.+|...++..+. ++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~-~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ-IDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh-hhHH
Confidence 9999999999999999999887 5543
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=68.04 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=59.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHH---HHhC-CCcEEEEEeCCCc--------------------HhhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQV---CKRF-PSVNFLKVEVEDH--------------------PYIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l---~~~~-p~~~~~~v~~d~~--------------------~~~~~~~~v~~~P 682 (713)
....+++|+. |+.|+.+.+.+... .... ..+.++.++++.. ..++..+||.++|
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 3456777777 99999999988853 3332 3577888887754 3588899999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHH
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~ 708 (713)
|++++. +|+.+..++|. ++++|.++|
T Consensus 85 t~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp EEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999985 79999999999 999998875
|
... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0015 Score=69.29 Aligned_cols=269 Identities=15% Similarity=0.084 Sum_probs=151.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
|.-+...|+++.|+..|-++- .+..-..+.....+|.+|+..++..-.... ....|-.++..|...|+|+.
T Consensus 713 g~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHH
Confidence 444445555555555554431 111222333444566666665554332221 23456678889999999999
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHH
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 425 (713)
|.+.|.++-. .......|-+.|+|.+|.....+. ..|+.....|...+.-+...|+|.+|.++
T Consensus 784 ae~lf~e~~~---------------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 784 AEELFTEADL---------------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHhcch---------------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 9999887643 112234456678888887776655 34555556677777777777777777666
Q ss_pred hhcc------ccCChh-----hHHhhh---cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 005125 426 YNKS------PKFCLE-----YYTKLF---GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-----NNKEVIKG 486 (713)
Q Consensus 426 ~~~a------l~~~~~-----~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 486 (713)
|-.. +.+... +.-.+. ......+.+..+|.-|...|+...|...|-+|-.... ...+.|.-
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWED 926 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHH
Confidence 5432 111000 000000 0112244667788999999999999999987754321 12233322
Q ss_pred HHHHHH----------HHHHH--H-----HHHHHHHcccHHHHHHHH------HHHhc-----cCCCCHHHHHHHHHHHH
Q 005125 487 VKMAKA----------MASAR--L-----RGNLLFKASKYKEACYAY------SEGLE-----HEAYNSVLLCNRAACRS 538 (713)
Q Consensus 487 ~~~~~~----------~~~~~--~-----lg~~~~~~g~~~~A~~~~------~~al~-----~~p~~~~~~~~la~~~~ 538 (713)
-.++.+ +..++ . .-.++-+.|-+++|+..- +-+.+ .....+.++..++..+.
T Consensus 927 ayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~le 1006 (1636)
T KOG3616|consen 927 AYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLE 1006 (1636)
T ss_pred HHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhh
Confidence 111110 00000 0 112233445555555432 11211 12345788999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 005125 539 KLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 539 ~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..|++++|-+.|-.+++++.-+
T Consensus 1007 degk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hccchhhhhHhhHHHhhccccc
Confidence 9999999999999999987543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=81.40 Aligned_cols=102 Identities=23% Similarity=0.339 Sum_probs=95.5
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
.+.+..++..++|+.|+..|.+||+++|+.+..+.+++.++.+.+++..|+..+.+|++++|....+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 367888999999999999999999999999999999999999999999999999999999999888776
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 566 -EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598 (713)
Q Consensus 566 -~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 598 (713)
.+|+..|++...+.|+++.+...+.++...+.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999877665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=54.49 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-05 Score=72.97 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
+..-|..++.-.+|+.|+.+|.++|.++|..+..+. +.+.++++..+|+.+....++|+++.|+....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~t------------nralchlk~~~~~~v~~dcrralql~~N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYT------------NRALCHLKLKHWEPVEEDCRRALQLDPNLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhh------------hHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence 344577788888999999999999999999987776 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
++.+|.++.....+++|+..+.+|..+
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999999765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-05 Score=53.84 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA 301 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 301 (713)
|++++.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999998875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00054 Score=72.58 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 295 YRSNKSAALIGLGRQIEALVECKE------AIRI----DPCY-HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
.|-.-|.+|.+..++++|+++|++ ++++ .|.. ...-...|..+...|+++.|+.+|-.+-.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------- 734 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------- 734 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------
Confidence 444556677777788888888764 4443 2222 22233457778888999999998876644
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
.............|.+|+..++..-...... ..|-.++..|...|+|+-|.++|.++-....
T Consensus 735 -------~~kaieaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~~~~~d--------- 796 (1636)
T KOG3616|consen 735 -------LIKAIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEADLFKD--------- 796 (1636)
T ss_pred -------HHHHHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhcchhHH---------
Confidence 2223344556778999988887665544332 5677789999999999999999987643221
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH-------------H
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY-------------K 510 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------------~ 510 (713)
--..|-+.|++++|.++-+++. .|......+. ..+.-+-..|+| +
T Consensus 797 ---------ai~my~k~~kw~da~kla~e~~--~~e~t~~~yi-----------akaedldehgkf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 797 ---------AIDMYGKAGKWEDAFKLAEECH--GPEATISLYI-----------AKAEDLDEHGKFAEAEQLYITIGEPD 854 (1636)
T ss_pred ---------HHHHHhccccHHHHHHHHHHhc--CchhHHHHHH-----------HhHHhHHhhcchhhhhheeEEccCch
Confidence 2456778888888887776653 3443333321 233333444444 4
Q ss_pred HHHHHHHHHh----------ccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 511 EACYAYSEGL----------EHEAYN-SVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 511 ~A~~~~~~al----------~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
.|+..|.+.- +.+|+. .+.+..+|.-|...|+..+|...|-+|-
T Consensus 855 ~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 855 KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 4455554321 123332 4667788888889999888888776553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0087 Score=67.18 Aligned_cols=291 Identities=11% Similarity=0.008 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H
Q 005125 259 PEELKFMGNEAY-NKARFEDALALYDRAIAINSS--KA----TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----H 327 (713)
Q Consensus 259 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 327 (713)
+.+.+.+|.+++ ...++++|..++++++.+... .. .+.+.++.++.+.+... |+..++++++..... .
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 346889999888 678999999999999887633 22 34566788888888777 999999999875541 2
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc------CC
Q 005125 328 RAHHRL--AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF------GA 399 (713)
Q Consensus 328 ~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p 399 (713)
...+.+ ...+...+++..|++.++.... ......+....+...+..+......+..+++++..+++... ++
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~-~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQ-LANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 222222 2233334799999999999888 54322222233444555566666677777777777766432 11
Q ss_pred C-ChH--HHHHHHH--HHHHHccCHHHHHHHhhcc---cc---CCh-------hh------------------HHhhhcc
Q 005125 400 D-SAP--QVYALQA--EALLRLQRHQEAHDSYNKS---PK---FCL-------EY------------------YTKLFGL 443 (713)
Q Consensus 400 ~-~~~--~~~~~la--~~~~~~g~~~~A~~~~~~a---l~---~~~-------~~------------------~~~~~~~ 443 (713)
. ..+ .+|..+- .++...|+++.+...+++. +. ..+ +. .-.|.+.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 1 112 2333332 3455667776766665543 11 111 00 0000000
Q ss_pred c-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHH--HHHHHHHHHHHHHHHHccc
Q 005125 444 A-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK------------EVIKGVKM--AKAMASARLRGNLLFKASK 508 (713)
Q Consensus 444 ~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~--~~~~~~~~~lg~~~~~~g~ 508 (713)
. -.+-++..-|......+..++|.++++++++.-.+.. .+.....+ .........++...+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 0 0123344456677777888899999998886421111 01111111 1223445568888889999
Q ss_pred HHHHHHHHHHHhccC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 509 YKEACYAYSEGLEHE---A------YNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 509 ~~~A~~~~~~al~~~---p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
+..|....+.+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999999988777542 2 237789999999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.2e-05 Score=66.18 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc------------Hhh-HHHc---CCCcccEEEEEE-C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH------------PYI-AKSE---GVSSIPAFKIYK-N 689 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~------------~~~-~~~~---~v~~~Pt~~~~~-~ 689 (713)
....++.||+ |++|+...|.++++.+++. +.++.|+.|.. +.. ...+ +|.++||..++. +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 4456888999 9999999999999999884 56666665542 222 2344 789999988885 4
Q ss_pred Ce-EeeeecCC-CHHHHHHHHHhh
Q 005125 690 GS-RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~-~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|. .+....|. +.++|++.|++.
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHh
Confidence 55 46678898 999999988764
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.9e-06 Score=51.52 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.8
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 515 AYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 515 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 548 (713)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00041 Score=71.18 Aligned_cols=170 Identities=18% Similarity=0.123 Sum_probs=113.7
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh-------------hc--ccC
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL-------------FG--LAG 445 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~--~~~ 445 (713)
..+.+.-++...+||+++|+.. .+|..++.- ...-..+|+++|+++++......... .. ...
T Consensus 181 ERnp~aRIkaA~eALei~pdCA-dAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCA-DAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhh-HHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 4556677888899999999885 566655431 22345677777777665433221110 00 011
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH- 522 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 522 (713)
-..+...+|.+..++|+.++|++.++..++..|.. ..++. ++..++..++.|.++...+.+.-++
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ire------------nLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRE------------NLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHH------------HHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 25566788999999999999999999999887753 22333 7999999999999999999886443
Q ss_pred CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCChHHHH
Q 005125 523 EAYNSVLLCNRAACRSK-LGQ---------------YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
-|..+...+..|.+..+ .++ -..|++.+.+|++.+|.-+..++
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 35556666655554432 222 13466778888888888777766
|
The molecular function of this protein is uncertain. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.044 Score=57.04 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=58.5
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHHHHHH----H
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS-NKSAALIGLGRQIEALVE----C 316 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~----~ 316 (713)
++....+++ .-|..+.+|.......+...+|+.-..+|.+.|..--+ .+.|. .+..+-...++...+... |
T Consensus 36 ~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy 114 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAY 114 (656)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 566666666 55667777777777777777777777777776653221 23332 222333333333332222 2
Q ss_pred HHHHH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHhh
Q 005125 317 KEAIR---IDPCYHRAHHRLAMLYF---------RLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 317 ~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~ 355 (713)
+-++. .++.....|...+..+. .+.+.+.-.+.|++|+.
T Consensus 115 ~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 115 DFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 22222 35555555655554433 22345556667888876
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.2e-05 Score=82.74 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred hhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 619 NERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 619 ~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
...|...+. ....+++.|++ |++|+.+.|.+++++..+. .+.|+.+|++...... ++|.++||+.+|..|.
T Consensus 353 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 353 GKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKFVPAGK 430 (462)
T ss_pred CcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCccccCEEEEEeCCC
Confidence 457777654 45567777888 9999999999999998874 4889999998765443 8999999999999887
Q ss_pred Ee--eeecCC-CHHHHHHHHHhhh
Q 005125 692 RV--KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~--~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+ ..+.|. +.+.|.+||++.+
T Consensus 431 ~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 431 KSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred CcCceEecCcCCHHHHHHHHHhcC
Confidence 63 567777 9999999998864
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.9e-05 Score=50.05 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 316 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.9e-05 Score=78.94 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=67.3
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEE----------------------------eCCCcHhhHHH
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKV----------------------------EVEDHPYIAKS 675 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v----------------------------~~d~~~~~~~~ 675 (713)
..+.+++.||+ |++|+...|.++++.+++. ++.++.| ..|....++..
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 34567777999 9999999999999998874 5555544 33445678889
Q ss_pred cCCCcccEEE-EEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 676 EGVSSIPAFK-IYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 676 ~~v~~~Pt~~-~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
++|.++|+++ |.++|+.+..+.|. +.++|.++|+.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999885 45789999999999 99999999983
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0028 Score=61.54 Aligned_cols=156 Identities=15% Similarity=0.038 Sum_probs=105.2
Q ss_pred HHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccC-ChhhHHhhhcccCcHHHHHHHHHHH
Q 005125 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF-CLEYYTKLFGLAGGAYLLIVRAQVY 457 (713)
Q Consensus 379 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~lg~~~ 457 (713)
...|++.+|....++.++-.|.+. .++..--.+++.+|+.+.-...+++.+.. +++. +-..++.-.++..+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDl-la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dl-------p~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDL-LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADL-------PCYSYVHGMYAFGL 185 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhh-hhhhhhhhHHHhccchhhhhhHHHHhccccCCCC-------cHHHHHHHHHHhhH
Confidence 344555566666666666666654 33334456677777777777777777654 3321 12345566677788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC----HHHHHHH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN----SVLLCNR 533 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 533 (713)
...|-|++|.+..++++++++.+..+.. .++.++...|++.++.++..+.-..-... ..-|..-
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~H------------a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASH------------AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHH------------HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 8888888888888888888888876665 57888888888888888877654332211 2235567
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005125 534 AACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al 554 (713)
|.++..-+.|+.|++.|.+-+
T Consensus 254 Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhcccchhHHHHHHHHHH
Confidence 778888888888888887543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0034 Score=69.19 Aligned_cols=276 Identities=13% Similarity=-0.000 Sum_probs=180.8
Q ss_pred hhhhHhh-cCCCCHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHH
Q 005125 247 FPQCISS-LNKLDPEELKFMGNEAYNK-----ARFEDALALYDRAIAI-----NSSKATYRSNKSAALIGLG-----RQI 310 (713)
Q Consensus 247 a~~~~~~-~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~ 310 (713)
+..+++. ....+..+...+|.+|+.- .|.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... ++.
T Consensus 231 a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~ 310 (552)
T KOG1550|consen 231 AFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYE 310 (552)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHH
Confidence 5555655 6777888888999888764 6899999999999771 1125567888999998843 778
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH----Hhhc
Q 005125 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLG---EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR----ELKR 383 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~ 383 (713)
.|+.+|.++.... ++.+.+.+|.+|..-. ++..|.++|..|.. ..-. .+.+.++..+. -..+
T Consensus 311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~--------~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHI--------LAIYRLALCYELGLGVERN 379 (552)
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCCh--------HHHHHHHHHHHhCCCcCCC
Confidence 8999999998765 4678889999988765 57899999999876 3222 33444444443 2457
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH---
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRL-QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--- 459 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--- 459 (713)
...|..++.++...++. .+...++..+... ++++.+...+.......-+.... ++..+.........
T Consensus 380 ~~~A~~~~k~aA~~g~~---~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~------~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNP---SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS------NAAYLLDQSEEDLFSRG 450 (552)
T ss_pred HHHHHHHHHHHHHccCh---hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh------HHHHHHHhccccccccc
Confidence 88899999999888832 3334444444332 77777766665544332221110 11111111111111
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 460 -AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA----SKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 460 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
..+...+...+.++... .+..+.. .+|.+|+.- .+++.|...|..+.... +...+++|
T Consensus 451 ~~~~~~~~~~~~~~a~~~--g~~~a~~------------~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg 513 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQ--GNADAIL------------KLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLG 513 (552)
T ss_pred cccchhHHHHHHHHHHhc--cCHHHHh------------hhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhh
Confidence 12445566666665443 3333333 577777654 46999999999998877 88999999
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHhCCC
Q 005125 535 ACRSKL---GQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 535 ~~~~~~---g~~~~A~~~~~~al~~~p~ 559 (713)
.++..- .++..|..+|.++.+.+..
T Consensus 514 ~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 514 YMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred hHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 988531 1268888888888776654
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=61.91 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=58.4
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHH-HH--HHHHh-CCCcEEEEEeCCCcHhhHHH--------cCCCcccEEEE
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQL-ME--QVCKR-FPSVNFLKVEVEDHPYIAKS--------EGVSSIPAFKI 686 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~-~~--~l~~~-~p~~~~~~v~~d~~~~~~~~--------~~v~~~Pt~~~ 686 (713)
.+........++++.|++ |++|+.+.+. |. ++.+. ....+++++|+++.+.++.. +++.++|+++|
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 455566667778888888 9999999762 32 34443 25689999999998887653 58999999999
Q ss_pred EE-CCeEeeeecCC
Q 005125 687 YK-NGSRVKEIPGH 699 (713)
Q Consensus 687 ~~-~g~~~~~~~g~ 699 (713)
+. +|+.+.+..+.
T Consensus 87 l~~~G~~~~~~~~~ 100 (124)
T cd02955 87 LTPDLKPFFGGTYF 100 (124)
T ss_pred ECCCCCEEeeeeec
Confidence 95 68888655444
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.3e-05 Score=48.71 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00058 Score=66.15 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+.-+-.-|.-|++.++|..|+.+|.+.|+..-.+++... ..|.|.+.+.+..|+|..|+..+.+++.++|.+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna--------vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA--------VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 445556699999999999999999999998766665543 234589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
..+++.=|.|++.+.++++|..+++..+.++-+
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999998877644
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=56.60 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=52.0
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh----hHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY----IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
+.+|+. |+.|+.+.+.++. .++.+..+|++..+. +...+++.++|++.+. |+. +.|.+++.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 455666 9999999988865 257888899987654 4456899999998864 543 88889999998
Q ss_pred HHH
Q 005125 707 SVK 709 (713)
Q Consensus 707 ~~~ 709 (713)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.4e-05 Score=71.86 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=70.1
Q ss_pred hcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCCC
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 700 (713)
...+.+++.|++ |++|+.+.|++.++--+. -.+.+.+.|+...|.++..+||.+.||+.+|++|-.++--.|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 456788999999 999999999999876433 23899999999999999999999999999999887776555558
Q ss_pred HHHHHHHHHh
Q 005125 701 CELLEKSVKL 710 (713)
Q Consensus 701 ~~~~~~~~~~ 710 (713)
.+.|.++-..
T Consensus 121 Kd~iieFAhR 130 (468)
T KOG4277|consen 121 KDAIIEFAHR 130 (468)
T ss_pred HHHHHHHHHh
Confidence 8888877654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.9e-05 Score=76.53 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
....+...+..|.+++|++.|..+|.++|..+..+..++.+++.++++..|+..|..++.++|+...-|-..|.+...+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 34456667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccc
Q 005125 342 EAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~ 360 (713)
++++|..++..+.+ ++-+
T Consensus 197 ~~e~aa~dl~~a~k-ld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACK-LDYD 214 (377)
T ss_pred chHHHHHHHHHHHh-cccc
Confidence 99999999999998 5544
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.2e-05 Score=69.44 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=67.2
Q ss_pred hHHHHHhhc--CCceEEEeecC--chhHHHHHHHHHHHHhC--CCcEEEEEeCCCcHhhHHHcCCCc------ccEEEEE
Q 005125 620 ERFRHFVTS--PGMAVVLFCSK--AEHKQVLQLMEQVCKRF--PSVNFLKVEVEDHPYIAKSEGVSS------IPAFKIY 687 (713)
Q Consensus 620 ~~~~~~l~~--~~~~vv~f~~c--g~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~~~~~~~~~v~~------~Pt~~~~ 687 (713)
+.+...+.. ...+++.|++| +.|..+.|+|.+++.+| +...|.+||+...|+.+.+|+|.. +||+++|
T Consensus 133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilF 212 (265)
T KOG0914|consen 133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILF 212 (265)
T ss_pred hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEE
Confidence 344444433 34577778885 89999999999999998 679999999999999999998764 8999999
Q ss_pred ECCeEeeeecCC
Q 005125 688 KNGSRVKEIPGH 699 (713)
Q Consensus 688 ~~g~~~~~~~g~ 699 (713)
.+|+++.+.|-.
T Consensus 213 q~gkE~~RrP~v 224 (265)
T KOG0914|consen 213 QKGKEVSRRPDV 224 (265)
T ss_pred ccchhhhcCccc
Confidence 999999988866
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.015 Score=64.15 Aligned_cols=254 Identities=13% Similarity=0.036 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSS---------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
-.+|......+.......++.+|..+..++...-+. .+......|.+....|++++|++..+.++..-|.+
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 356677778888889999999999999998765433 13455567888889999999999999999987765
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc--HHHHHHHHHHH----H
Q 005125 327 -----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR--WNDLLKETQNV----I 395 (713)
Q Consensus 327 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a----l 395 (713)
..++..+|.+..-.|++++|+.+..++.+ ....+......+...+..+.+....|+ +.+....+... +
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999888 654444444555666777788888883 33333333222 2
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
...|-+. ......+.++..--+++.+..-....++........-. ..-.+++.++.+++..|++++|...+.+...
T Consensus 571 ~q~~~~~-f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~---~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 571 EQKPRHE-FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPL---LSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred hhcccch-hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2223322 12222233333333377777766666554332211000 0112336899999999999999999998876
Q ss_pred hCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 476 IDPNN-KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 476 ~~p~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
+-.+. +..+.. ..+..-.......+|+.++|.....+..
T Consensus 647 l~~~~~~~~~~~------a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 647 LLLNGQYHVDYL------AAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhcCCCCCchHH------HHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 54333 222211 1112234445567899999988887743
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=62.73 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------CCcHhhHHHcCCCccc-
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV-----------------------EDHPYIAKSEGVSSIP- 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~-----------------------d~~~~~~~~~~v~~~P- 682 (713)
...+++.|++ |+.|+...|.++++.+.++ +.++.|+. |....++..++|..+|
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 3457777888 9999999999999988863 66666653 3445677789999999
Q ss_pred EEEEEECCeEeeeecCC-CHHHH
Q 005125 683 AFKIYKNGSRVKEIPGH-QCELL 704 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~-~~~~~ 704 (713)
++++.++|+.+....|. +.+.|
T Consensus 104 ~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred EEEECCCceEEEEEeccCChHhc
Confidence 55555789999999998 66544
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=62.58 Aligned_cols=166 Identities=17% Similarity=0.044 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 005125 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEA 378 (713)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~ 378 (713)
-+.+.+..|++.+|...+++.++-.|.+.-++..--.+++.+|+.+.-...+++++..-+++-+ -.....-..+..+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp---~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP---CYSYVHGMYAFGL 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc---HHHHHHHHHHhhH
Confidence 3444455566666666666666666666555555555666666666666666665551133321 0111222233344
Q ss_pred HHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHH
Q 005125 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458 (713)
Q Consensus 379 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 458 (713)
.+.|-|++|.+..++++++++.+. .+...++.++...+++.++.+...+.-..-.. .+. ....-|-.-+.++.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~-Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~m---lasHNyWH~Al~~i 258 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDC-WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWM---LASHNYWHTALFHI 258 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcch-HHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhH---HHhhhhHHHHHhhh
Confidence 556666666666666666666654 45555678888888888888887765332211 110 11223445677788
Q ss_pred HcCCHHHHHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAA 474 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al 474 (713)
.-+.|+.|++.|.+-+
T Consensus 259 E~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 259 EGAEYEKALEIYDREI 274 (491)
T ss_pred cccchhHHHHHHHHHH
Confidence 8888999998887654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=46.68 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.4e-05 Score=77.42 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=70.6
Q ss_pred hHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE-
Q 005125 620 ERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR- 692 (713)
Q Consensus 620 ~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~- 692 (713)
.+|...+.+ ...+++.|++ ||+|+++.|++++|++.+ ++++++++|...+..-. +.|+..||+.+|+.|..
T Consensus 374 knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~--~~~~~fPTI~~~pag~k~ 451 (493)
T KOG0190|consen 374 KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPS--LKVDGFPTILFFPAGHKS 451 (493)
T ss_pred cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcc--ccccccceEEEecCCCCC
Confidence 467776655 5567777999 999999999999999887 67999999998764332 25677999999998763
Q ss_pred -eeeecCC-CHHHHHHHHHhhh
Q 005125 693 -VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 -~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+-...|. +.+.+..+|++..
T Consensus 452 ~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 452 NPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred CCcccCCCcchHHHHhhhccCC
Confidence 3344566 8899999987654
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=65.19 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh-----------------------hHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY-----------------------IAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~-----------------------~~~~~~v~~~Pt 683 (713)
...+++.||+ |++|+...|.+.++.+. ++.++.|+.++.+. +...++|..+|+
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~ 145 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE 145 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCe
Confidence 4567777999 99999999999998764 57778887654321 334678999995
Q ss_pred -EEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 -FKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 -~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|++-++|+.+....|. +.+.++++|+..
T Consensus 146 t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 146 TFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred EEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 5555689999999998 888888888754
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0033 Score=67.61 Aligned_cols=168 Identities=13% Similarity=-0.036 Sum_probs=121.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhcccc-HHHHHHHHHHHHHHHHHH----HhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKD-IAKAEALHKHLTKCNEAR----ELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
+.--.|+-+.+++.+.++.+ ...-. +.....+..++....... .....+.|.+.++...+..|+.. -+++..|
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~-lfl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA-LFLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH-HHHHHHH
Confidence 33345899999999998876 22222 212222222222222222 24567789999999999999985 6777789
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++...|+.++|++.|++++....+... ...-.++.+|.++..+.+|++|..+|.+..+.+.-....+.+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Q------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y---- 344 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQ------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY---- 344 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHh------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH----
Confidence 9999999999999999999865544433 235578899999999999999999999999876665555443
Q ss_pred HHHHHHHHHHHHHHHcccH-------HHHHHHHHHHhcc
Q 005125 491 KAMASARLRGNLLFKASKY-------KEACYAYSEGLEH 522 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 522 (713)
..|.++...++. ++|.+.|.++-.+
T Consensus 345 -------~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 345 -------LAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred -------HHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 688899999988 7777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=46.90 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
+.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.016 Score=60.57 Aligned_cols=232 Identities=15% Similarity=0.098 Sum_probs=136.4
Q ss_pred hHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 250 CISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAIN--------SSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 250 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
+........++..+..+......++++++..+.+++...- +......+..-.-+..+.+.++++.+......
T Consensus 20 ~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~ 99 (352)
T PF02259_consen 20 YLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQ 99 (352)
T ss_pred HHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3333444555778888888889999999999998887642 11111112222222233344444444322111
Q ss_pred hCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhhccccHH----HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005125 322 IDPCYHRAHHRLAMLY-FRLGEAEKAVSHYKKSSSLANQKDIA----KAEALHKHLTKCNEARELKRWNDLLKETQNVIS 396 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 396 (713)
. ......+-... .+......-....+..+. ....-.. .......++..+...+..|.++.|...+.++..
T Consensus 100 ~----~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~-~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 100 N----PQDLKSLLKRWRSRLPNMQDDFSVWEPILS-LRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred c----HHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 0 11111110000 011111111122222222 1100000 123346678889999999999999999999988
Q ss_pred cCCCC---hHHHHHHHHHHHHHccCHHHHHHHhhccccC-Chhh--------HH---------------hhhcccCcHHH
Q 005125 397 FGADS---APQVYALQAEALLRLQRHQEAHDSYNKSPKF-CLEY--------YT---------------KLFGLAGGAYL 449 (713)
Q Consensus 397 ~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~--------~~---------------~~~~~~~~~~~ 449 (713)
..+.. .+.+....+.++...|+..+|+..++..+.. .... .. ........+.+
T Consensus 175 ~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 254 (352)
T PF02259_consen 175 LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKA 254 (352)
T ss_pred cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHH
Confidence 76322 3577788899999999999999999887761 1111 00 00111223667
Q ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 450 LIVRAQVYIAA------GRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 450 ~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
+..+|...... +..++++..|.+++.++|....+|..
T Consensus 255 ~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 255 FLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 88888888888 88999999999999999999888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.003 Score=63.18 Aligned_cols=137 Identities=8% Similarity=-0.056 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG-LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577778888888889999999999997666678899999999777 4566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.|+.+.|...|++++. .-+.... .-..|..........|+++......+++.+..|+.
T Consensus 83 ~~d~~~aR~lfer~i~-~l~~~~~---~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAIS-SLPKEKQ---SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCC-TSSCHHH---CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHH-hcCchhH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999 5444421 11223333344455678888888888888777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=46.17 Aligned_cols=32 Identities=19% Similarity=0.621 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSS 291 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 291 (713)
++++.+|.+++..|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0022 Score=64.14 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
+|..+.....+.+..+.|..+|.+|.+..+ ....+|...|.+.+. .++.+.|...|+.+++..|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR----------CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 566666777777788999999999975433 234577778888666 566666999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS---VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
|. .....+...++.+.|...|++++..-|... .+|......-.+.|+.+......+++.+..|++
T Consensus 73 ~~------------~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 73 WL------------EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HH------------HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HH------------HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 87 356777888999999999999998876554 577778888888899999998888888888774
Q ss_pred h
Q 005125 561 S 561 (713)
Q Consensus 561 ~ 561 (713)
.
T Consensus 141 ~ 141 (280)
T PF05843_consen 141 N 141 (280)
T ss_dssp -
T ss_pred h
Confidence 3
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=63.07 Aligned_cols=81 Identities=11% Similarity=0.265 Sum_probs=49.9
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHH---cCCCcccEEEEEE-CCeEeeeecCCCHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKS---EGVSSIPAFKIYK-NGSRVKEIPGHQCEL 703 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~---~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~ 703 (713)
...+++|.+ ||+|.+..|+|.++++..|.+.+-.+..|+++++... .|..++|+|+++. +|++++++.. -|+.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge-rP~~ 120 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE-RPKE 120 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES-S-HH
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC-CCHH
Confidence 346666766 9999999999999999989888888888888776554 4688999999996 4677776544 4666
Q ss_pred HHHHHHhh
Q 005125 704 LEKSVKLY 711 (713)
Q Consensus 704 ~~~~~~~~ 711 (713)
+.++++++
T Consensus 121 ~~~~~~~~ 128 (129)
T PF14595_consen 121 VQELVDEY 128 (129)
T ss_dssp HH------
T ss_pred HhhccccC
Confidence 77776654
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00039 Score=64.07 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=63.4
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCccc
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSSIP 682 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~~P 682 (713)
..+.+++.|++ |++|+...|.++++.+. ++.++.|+.++ ...++..++|.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 34567777888 99999999999998765 36666666432 23456678899999
Q ss_pred E-EEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 A-FKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t-~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+ |++.++|+.+....|. +.+++.++|+++
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 5 5555789999999998 999999999876
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0065 Score=67.19 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
++.|..+|.+-.+.|...+|++.|-+| +++..|.....+..+.|.|++-+.++.-|-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555555555555555555555443 334444444455555555555555554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=57.73 Aligned_cols=94 Identities=22% Similarity=0.222 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK----------------------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
+...|......++.+.++..+.+++.+.... ..++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455667778899999999999999874321 135567788888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+..+|.+..+|..+-.+|...|+..+|+..|++...
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998866
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.018 Score=58.82 Aligned_cols=232 Identities=16% Similarity=0.087 Sum_probs=150.7
Q ss_pred HhcCHHHHHHHHHHHHHhC------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 005125 271 NKARFEDALALYDRAIAIN------SSK--------ATYRSNKSAALIGLGRQIEALVECKEAIRI---DPC-------Y 326 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~------p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 326 (713)
..|-|++|.++-+++|..- +.. ...+-.+..|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4567778888777777542 111 234556777888899999999988877765 343 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
+..++.+|......+.++.|...|..|.+ +..... +. ..+.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~~~d-----l~---------------------------------a~~n 407 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATK-LTESID-----LQ---------------------------------AFCN 407 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhhHHH-----HH---------------------------------HHHH
Confidence 56788889888899999999999999988 322210 00 1344
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
.++|..|++.++-+.-.+.++..- |.+.....+....+.+++..|...+.++++.||...+.+.+++. +.+-.+.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~---p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~r 482 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG---PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNR 482 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC---CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHH
Confidence 567888888777665555555432 22111111111245688889999999999999999999999987 2222221
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC---CCCHHHHH---HHHHHHHHcCC--HHHHHHHH
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE---AYNSVLLC---NRAACRSKLGQ--YEKAVEDC 550 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~---~la~~~~~~g~--~~~A~~~~ 550 (713)
+ ....+.-+|.+....|+..++.+..+-++.+. |+.+.-++ .+-.+|...|+ .+...+.|
T Consensus 483 L----~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 483 L----TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred H----HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 1 12234468999999999999999888887664 34333222 34456666666 44443333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.021 Score=58.26 Aligned_cols=183 Identities=16% Similarity=0.128 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhhccccHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRI----DPCYHRAHHRLAMLYFR---LGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
.++...++-.+|....+|+.-+...+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..++....+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 3556677777888888998888888877666 44556777788888888 8888888888888655133333
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH---------ccCHHHHHHHhhccccCChh
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR---------LQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~ 435 (713)
++.+..+|.+|-. ....++|+.+|.++..+.++
T Consensus 217 --------------------------------------~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 217 --------------------------------------PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3445555554432 22378999999999998876
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
.+. -.+++.++...|...+...-+++.. . .+...+.+.|.
T Consensus 259 ~Y~-----------GIN~AtLL~~~g~~~~~~~el~~i~----------~------------~l~~llg~kg~------- 298 (374)
T PF13281_consen 259 YYS-----------GINAATLLMLAGHDFETSEELRKIG----------V------------KLSSLLGRKGS------- 298 (374)
T ss_pred ccc-----------hHHHHHHHHHcCCcccchHHHHHHH----------H------------HHHHHHHhhcc-------
Confidence 433 2345556666665333222222211 0 12222222221
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 516 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.-.-.+...+-.++.+..-.|++++|++.+++++.+.|..
T Consensus 299 -----~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 -----LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred -----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1111234444556666666777777777777777765544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.2 Score=55.73 Aligned_cols=280 Identities=11% Similarity=-0.022 Sum_probs=173.2
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDP-----CYHRA 329 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 329 (713)
+.-.+.+..-+..+...|...+|+.+.-.| -+|.. +..+...+.-+...++.. .+...++.-| .++..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchH
Confidence 444667777777888888888888765443 23322 122333333344444432 3333333333 23556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhcc-ccH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH----
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQ-KDI-AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP---- 403 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p-~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 403 (713)
....|.......++.+|.....++...+.+ ++. .........-.++.+....++.+.|++..+.++..-|....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 667788888899999999988887762222 221 11222334455677788899999999999999988776532
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH--HHHHHHHHHH----HHhC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF--EDAVKTAQDA----AQID 477 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~a----l~~~ 477 (713)
.++..+|.+..-.|++++|..+..++.+....+.... ....+.+..+.++..+|+. .+....|... +...
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~----l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH----LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 5667789999999999999999999877644332221 1344667778889999933 3333333322 2223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc----CCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH----EAYN---SVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
|-+..... ..+.++...-+++.+.......++. .|.. ...++.|+.++...|++++|...+
T Consensus 574 ~~~~f~~~------------~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 574 PRHEFLVR------------IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred ccchhHHH------------HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33322222 1233333333366666666666554 2322 223458999999999999999999
Q ss_pred HHHHHhC
Q 005125 551 TAALIVM 557 (713)
Q Consensus 551 ~~al~~~ 557 (713)
.....+-
T Consensus 642 ~~~~~l~ 648 (894)
T COG2909 642 DELERLL 648 (894)
T ss_pred HHHHHHh
Confidence 8887764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0051 Score=59.30 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=95.3
Q ss_pred hhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 247 FPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 247 a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
..+++.+.-|...+.-+..+......|++.+|...|..++...|++.++...++.+|...|+.+.|...+... |..
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~ 197 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQ 197 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----ccc
Confidence 4455555444455566777788888888888888888888888888888888888888888888887766653 322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
...-...+ ....++.+.++-. ..+ +..+++.+..+|++. .+-
T Consensus 198 ~~~~~~~~--------l~a~i~ll~qaa~-~~~----------------------------~~~l~~~~aadPdd~-~aa 239 (304)
T COG3118 198 AQDKAAHG--------LQAQIELLEQAAA-TPE----------------------------IQDLQRRLAADPDDV-EAA 239 (304)
T ss_pred chhhHHHH--------HHHHHHHHHHHhc-CCC----------------------------HHHHHHHHHhCCCCH-HHH
Confidence 11110010 1112333444332 111 122344455667664 777
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
+.+|..+...|+.++|++.+-..+..+..
T Consensus 240 ~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 240 LALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 78899999999999999988877765543
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00054 Score=59.21 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=59.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC---------------------CCcHhhHHHcCCCcccEEEE
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV---------------------EDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~---------------------d~~~~~~~~~~v~~~Pt~~~ 686 (713)
+..++.|++ |+.|..+.|.+..+.+.+. +..+.++. |....+...++|.++|++.+
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 567777777 9999999999999887753 33333332 23456888999999999999
Q ss_pred EECCeEeeeecCC-CHHHHHHHH
Q 005125 687 YKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 687 ~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
+..|..+..+.|. +++.|.+.+
T Consensus 100 id~~gi~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 100 VDPGGIVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred EcCCCeEEEEeccCCHHHHHhhc
Confidence 9765588889998 889887653
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.004 Score=64.76 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=89.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 532 (713)
-|..+...|+...|+.++..|+...|....+-.. +++.++..-|-..+|-..+.+++.+....+..++.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v-----------~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV-----------NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHH-----------HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 3555566899999999999999998876655443 79999999999999999999999999888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 533 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|..|..+.+.+.|++.|+.|++++|+++....
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 999999999999999999999999999876544
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00086 Score=62.01 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=67.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCC----------------------cHhhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVED----------------------HPYIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~----------------------~~~~~~~~~v~~~P 682 (713)
....++.|++ |+.|+...+.+.++.+++++ +.++.++.|. ...+...++|..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 3457777888 99999999999999988843 7777887653 35677889999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++.++. +|+.+....|. +.+++.+++++.+
T Consensus 141 ~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 877664 78888888998 9999999988753
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00048 Score=72.46 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=75.7
Q ss_pred HHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecC
Q 005125 622 FRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698 (713)
Q Consensus 622 ~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 698 (713)
+.......+..++.|++ ||+|+.+.|.+.+++..+ +.+.+..||++.+..++..++|.+.||+.+|..|..+-...|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSG 119 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccC
Confidence 34455667888888888 999999999999998777 458999999999999999999999999999999955666777
Q ss_pred C-CHHHHHHHHHh
Q 005125 699 H-QCELLEKSVKL 710 (713)
Q Consensus 699 ~-~~~~~~~~~~~ 710 (713)
. +.+.+..++..
T Consensus 120 ~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 120 PRNAESLAEFLIK 132 (383)
T ss_pred cccHHHHHHHHHH
Confidence 7 88888887754
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0013 Score=50.90 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=55.4
Q ss_pred Eeec-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecC-C-CHHHHHHHHH
Q 005125 635 LFCS-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG-H-QCELLEKSVK 709 (713)
Q Consensus 635 ~f~~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~~~~~~~ 709 (713)
+|.. |+.|..+...++++...++ +.+--++..+.+.+ ..+||.++|++ +.||+. .+.| . +.++|.+||+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPal--vIng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPAL--VINGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEE--EETTEE--EEESS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEE--EECCEE--EEEecCCCHHHHHHHhC
Confidence 3555 9999999999999999885 77777788888888 99999999997 458875 3677 4 8899999885
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0062 Score=62.00 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAI----NSSKATYRSNKSAALIG---LGRQIEALVECKEAI-RIDPCYHR 328 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~ 328 (713)
-+++....+=..|....+|+.-+.+.+..-.+ -++.....+.+|.++-+ .|+.++|+..+..++ ...+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34566777777888888999888888876655 34556677788888888 889999999998844 45666788
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH-------HHH
Q 005125 329 AHHRLAMLYFRL---------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK-------ETQ 392 (713)
Q Consensus 329 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-------~~~ 392 (713)
.+..+|.+|... ...++|+..|.++.+ ++|+.... .+.+..+...|.-.+... .+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~Y~G-------IN~AtLL~~~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDYYSG-------INAATLLMLAGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccccch-------HHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 888888888643 247788999999988 88765322 222222222222111111 111
Q ss_pred HHH-Hc---CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 393 NVI-SF---GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 393 ~al-~~---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..+ +. .+...-..+..++.+..-.|++++|++.+++++++.|.
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 111 11 12221234445678888899999999999999988764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0088 Score=64.39 Aligned_cols=162 Identities=15% Similarity=0.008 Sum_probs=123.2
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHH-HHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 270 YNKARFEDALALYDRAIAINSSK-ATY-----RSNKSA-ALI----GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~p~~-~~~-----~~~la~-~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
--.||-+.++..+.++.+...-. +-+ .++... .+. .....+.|.+.++...+..|+..-.++..|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34689999999999987732211 111 111111 111 2456788999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
..|+.++|++.|++++. ...... ......++.++..+..+.+|++|...+....+.+.-......+..|.++...++
T Consensus 279 ~~g~~~~Ai~~~~~a~~-~q~~~~--Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIE-SQSEWK--QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HhcCHHHHHHHHHHhcc-chhhHH--hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 99999999999999875 333322 223455788899999999999999999999998777666677778999999999
Q ss_pred H-------HHHHHHhhccccCCh
Q 005125 419 H-------QEAHDSYNKSPKFCL 434 (713)
Q Consensus 419 ~-------~~A~~~~~~al~~~~ 434 (713)
. ++|..+|.++..+..
T Consensus 356 ~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred chhhhhhHHHHHHHHHHHHHHHh
Confidence 9 888888888765443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=55.05 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=65.1
Q ss_pred hcCCceEEEeec--CchhHHHHHH-HH--HHHHhC-CCcEEEEEeCC--CcHhhHHHcCCCcccEEEEEE--CCeEeeee
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQL-ME--QVCKRF-PSVNFLKVEVE--DHPYIAKSEGVSSIPAFKIYK--NGSRVKEI 696 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~-~~--~l~~~~-p~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~ 696 (713)
......++.|++ |.+|+.+.+. |. .+.+.. ...+++.+|++ +...++..+++.++|++.++. +|+.+.++
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 345556666777 9999998753 32 222222 25788888887 466788999999999999986 59999999
Q ss_pred cCC-CHHHHHHHHHhhh
Q 005125 697 PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~~ 712 (713)
+|. +++.+...|+++.
T Consensus 95 ~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 95 SGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 999 9999999988753
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.01 Score=53.54 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
-..++..+...+++++|+..++.++....+..- .+.+-..++.+...+|++++|+..+...-. +.......
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l-------k~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~ 162 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENL-------KALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVA 162 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHH
Confidence 344677888889999999999988876554332 234667788999999999999887765322 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 486 GVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 486 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
. ..|.++...|+-++|+..|+++++..++.
T Consensus 163 e-----------lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 163 E-----------LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred H-----------HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1 47999999999999999999999887543
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00088 Score=57.12 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHH---HHHhC-CCcEEEEEeCCC----------------cHhhHHHcCC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQ---VCKRF-PSVNFLKVEVED----------------HPYIAKSEGV 678 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~---l~~~~-p~~~~~~v~~d~----------------~~~~~~~~~v 678 (713)
++........-.+++|.. |..|.++...+.. +.+-. +...++.+++.. ..++++.++|
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 344444445556666766 9999999875433 32222 445555555432 2489999999
Q ss_pred CcccEEEEEEC-CeEeeeecCC-CHHHHHHHHH
Q 005125 679 SSIPAFKIYKN-GSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 679 ~~~Pt~~~~~~-g~~~~~~~g~-~~~~~~~~~~ 709 (713)
++.|||+||.. |+.+..+||. +++++..-++
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999985 8999999999 8888766553
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=59.25 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=60.9
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-------------HhhHHHcCC--CcccEEEEE-ECCeEe-
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-------------PYIAKSEGV--SSIPAFKIY-KNGSRV- 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 693 (713)
++.||+ |++|++..|.+.++.++++ +.++-|.+|.. ..+...+++ ..+|+..++ ++|..+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 667888 9999999999999999984 77776766633 125567785 689987777 578775
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
....|. +.++|.+.|++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTV 170 (181)
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 578899 989998888764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.087 Score=58.23 Aligned_cols=269 Identities=14% Similarity=0.033 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGL-----GRQIEALVECKEAIRI-----DPCYHRAHHRLAMLYFRLG-- 341 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 341 (713)
+..+|..+|+.+.+. .+..+.+.+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456788888887665 4677888888888764 6899999999999771 1225668889999999853
Q ss_pred ---CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 342 ---EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL---KRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 342 ---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+++.|+.+|.++.. ....+ ..+.++..+..- .+...|..+|..+.+.+.. .+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~-~g~~~--------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~ 372 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAE-LGNPD--------AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYEL 372 (552)
T ss_pred ccccHHHHHHHHHHHHh-cCCch--------HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHh
Confidence 78889999999988 55443 233344443332 4678899999888877653 566777777764
Q ss_pred ----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 416 ----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 416 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
..+...|..+|.++..... +.+...++..+... ++++.+...+....+..-..+.....+
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~------------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~--- 437 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGN------------PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAY--- 437 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccC------------hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHH---
Confidence 3478889999998876552 22344444444433 777777666665555433332221100
Q ss_pred HHHHHHHHHHHHHH-H---cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChH
Q 005125 491 KAMASARLRGNLLF-K---ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL----GQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 491 ~~~~~~~~lg~~~~-~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+........ . ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.+|.... ..
T Consensus 438 -----l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~ 507 (552)
T KOG1550|consen 438 -----LLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQ 507 (552)
T ss_pred -----HHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hH
Confidence 000110111 1 2255666677766654 35678888899888765 35899999999988776 44
Q ss_pred HHH---------------HHHHHHHHHHHHhCCC
Q 005125 563 ARL---------------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 563 a~~---------------~~A~~~~~~al~~~p~ 581 (713)
+.+ ..|..+|.++.+.+..
T Consensus 508 ~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 508 ALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 433 5677777777665543
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00091 Score=56.73 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=59.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc-----------------------HhhHHHcCCCcc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH-----------------------PYIAKSEGVSSI 681 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~-----------------------~~~~~~~~v~~~ 681 (713)
.+..++.|++ |+.|+...+.+.++...+ +++.++.|+.+.. ..+...+++..+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 3456777777 999999999999999888 6799999999885 778899999999
Q ss_pred cEEEEEE-CCeEeeeecC
Q 005125 682 PAFKIYK-NGSRVKEIPG 698 (713)
Q Consensus 682 Pt~~~~~-~g~~~~~~~g 698 (713)
|++.++. +|+.+..+.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9998885 7888877765
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0089 Score=53.34 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHH--H--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK------EVIKGVK--M--AKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~--~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
...|......++.+.++..+++++.+..... ..|..-. . ..-+.++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3446666778899999999999998743221 1122111 1 1224556678889999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
..+|.+-.+|..+-.+|..+|+..+|+..|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.48 Score=53.39 Aligned_cols=313 Identities=12% Similarity=0.043 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS---KAT-YRSNK--SAALIGLGRQIEALVECKEAIRID--PCYHR---- 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~---- 328 (713)
+.+.++.++.+.+... |+..++++++.... ... ..+.+ ...+...+++..|++.++...... ..++.
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 3456677777777766 99999998876433 222 11222 223333479999999999888765 34432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh-----hccccHHHHHHHHHHHHH--HHHHHHhhcHHHHHHH---HHHHHHc-
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSL-----ANQKDIAKAEALHKHLTK--CNEARELKRWNDLLKE---TQNVISF- 397 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~---~~~al~~- 397 (713)
+....+.++...+..+++++..+++... .++.. ....+..+... .......|++..+... ++..++.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2333456666777788888877777441 12221 11122222222 2233344554444333 2222221
Q ss_pred --CC-------C---------------C-h------------HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH---
Q 005125 398 --GA-------D---------------S-A------------PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY--- 437 (713)
Q Consensus 398 --~p-------~---------------~-~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 437 (713)
.+ + . . .-+|..-|......+..++|.++++++++.-.+..
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 11 0 0 0 12344446667777777788888888876544433
Q ss_pred --------------HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 438 --------------TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 438 --------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
..|. ..-...++..++.+.+-.+++..|....+.+.......+.... .......++-.|..+
T Consensus 339 ~~~~~~sl~~~~~~~~~~-~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~---~~~~~~~~yL~gl~~ 414 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWL-RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY---ESLYPLLHYLLGLYY 414 (608)
T ss_pred CCCCCcCHHHHHHhHHHH-HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh---hhhhHHHHHHHHHHH
Confidence 0000 0012345667788888899999999999887765432211000 000012233588889
Q ss_pred HHcccHHHHHHHHH--------HHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC---ChHHHHHHH
Q 005125 504 FKASKYKEACYAYS--------EGLEHEAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALI-VMPS---YSKARLEAA 568 (713)
Q Consensus 504 ~~~g~~~~A~~~~~--------~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~---~~~a~~~~A 568 (713)
...|+.+.|...|. .+....+.+ .-+..|+..++...+.-......+..+++ ++|. .+...+..|
T Consensus 415 q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a 494 (608)
T PF10345_consen 415 QSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTA 494 (608)
T ss_pred HHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHH
Confidence 99999999999998 444444433 33455777787776664443323444443 3442 233333444
Q ss_pred HHHHHHHHHhCC
Q 005125 569 IQDYEMLIREIP 580 (713)
Q Consensus 569 ~~~~~~al~~~p 580 (713)
-..+-.++...+
T Consensus 495 ~~~~~~~~~~~~ 506 (608)
T PF10345_consen 495 YCLVLATYNTFE 506 (608)
T ss_pred HHHHHHHHhhCC
Confidence 444444444333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00075 Score=55.05 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=63.0
Q ss_pred hHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..+..++...+..+++|.. +..+.-+.=+++++.+.+++ .....|..+....++..||+...|+++||++|+.++
T Consensus 17 ~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 17 DTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLG 96 (107)
T ss_dssp CCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEE
T ss_pred hhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEE
Confidence 3555666677777777766 35556666789999999976 455666777788999999999999999999999999
Q ss_pred eecCC
Q 005125 695 EIPGH 699 (713)
Q Consensus 695 ~~~g~ 699 (713)
.|+|.
T Consensus 97 ~i~gi 101 (107)
T PF07449_consen 97 AIEGI 101 (107)
T ss_dssp EEESS
T ss_pred EecCe
Confidence 99986
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00029 Score=64.41 Aligned_cols=96 Identities=25% Similarity=0.445 Sum_probs=77.7
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
++++.....| ........++.|++ |..|.++..++..+++..+.+.|++.+.+++++|+..+.|...|.+.++++|
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 4555555666 22334445555777 8999999999999998888899999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHh
Q 005125 691 SRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~ 710 (713)
+.++++.|+++..+...++.
T Consensus 81 ~~v~~l~~~~~~~~~~~~~~ 100 (227)
T KOG0911|consen 81 EKVDRLSGADPPFLVSKVEK 100 (227)
T ss_pred hhhhhhhccCcHHHHHHHHH
Confidence 99999999966555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.025 Score=62.85 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=142.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE 344 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 344 (713)
+|......+-|++|...|++- .-+..+.. ......+..+.|.++.+++ +.+..|..+|.+....|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 344555566666776666652 11122221 1223446666666666654 34789999999999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH
Q 005125 345 KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424 (713)
Q Consensus 345 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 424 (713)
+|++.|-++ -+|.+ +..........|.|++-+.++..+-+...+. .+-..+-.+|.+.++..+-.+
T Consensus 1122 dAieSyika---dDps~---------y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1122 DAIESYIKA---DDPSN---------YLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred HHHHHHHhc---CCcHH---------HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHH
Confidence 999999876 44543 5556666777889999888888777654432 233344556777777766555
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~ 504 (713)
.+.- |+ ..-....|.-++..|.|+.|.-+|... .-|. .++..+.
T Consensus 1188 fi~g-----pN-----------~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a------------~La~TLV 1231 (1666)
T KOG0985|consen 1188 FIAG-----PN-----------VANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFA------------KLASTLV 1231 (1666)
T ss_pred HhcC-----CC-----------chhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHH------------HHHHHHH
Confidence 4431 21 112344677888888888887777532 1222 5788888
Q ss_pred HcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 505 KASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 505 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 547 (713)
.+|+|..|+..-++| ++..+|...+.++...+.+.-|.
T Consensus 1232 ~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred HHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHH
Confidence 899999999888876 35678888888888877777765
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00022 Score=69.42 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
+.-.+..|.+++|++.|..++.++|.....+. ..+.+++++++...|+..|..+++++|+.+.-|-..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~------------kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYA------------KRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcc------------cccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 44455678899999999999999999988887 699999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 534 AACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 534 a~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+.....+|+|++|..++..+.+++-+.
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccH
Confidence 999999999999999999999987653
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.036 Score=52.33 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=127.0
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
+.+...-..|+.+.+.++.++|.++. +|..+-.++.. ..+..+-++++.+.++-+|.+..+|..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYT----------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH----- 117 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYT----------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH----- 117 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccch----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH-----
Confidence 33445556788888888888886554 44444444444 446788899999999999999999983
Q ss_pred HHHHHHHHHHHHHHcccHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----
Q 005125 492 AMASARLRGNLLFKASKYK-EACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----- 565 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----- 565 (713)
.-.+....|+.. .-++..+.++..+..+..+|..+-.+....+.++.-+.+....++.+--+..||.
T Consensus 118 -------Rr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 118 -------RRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred -------HHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 556666777877 7889999999999999999999999999999999999999999999888777776
Q ss_pred -------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 566 -------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 566 -------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+.-+.+-.+.+.+.|+|..++.-|.-..
T Consensus 191 i~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 191 ITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred EEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 5557778888999999999888765443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=78.45 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=67.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEe-----C----------------------CCcHhhHHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVE-----V----------------------EDHPYIAKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~-----~----------------------d~~~~~~~~~~ 677 (713)
.+.+++.||+ |++|+...|.|+++.++|++ +.++.|. . |....+...++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 4567777999 99999999999999999854 6666663 1 22345677899
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|.++|+++++ ++|+.+.++.|. ..+.|.++|+..
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 9999999999 689999999999 889999988765
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.043 Score=52.11 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=59.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------cHhhHHHcCCCcccEEEEEEC-CeEee-
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------HPYIAKSEGVSSIPAFKIYKN-GSRVK- 694 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~~- 694 (713)
...+++|+. |+.|+.+.|++..++.+| ++.++.|++|- .+.+++.+||..+|++.+..- +..+.
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 344556665 999999999999999998 57888888873 467889999999998877764 42433
Q ss_pred eecCC-CHHHHHHHH
Q 005125 695 EIPGH-QCELLEKSV 708 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~ 708 (713)
--.|. +.++|.+.|
T Consensus 200 v~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 200 VSQGFMSLDELEDRI 214 (215)
T ss_pred EeeecCCHHHHHHhh
Confidence 34566 888887754
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0007 Score=42.97 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56778888888888888888888888888774
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.18 Score=50.46 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=69.1
Q ss_pred HHhcCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC----------C
Q 005125 270 YNKARFEDALALYDRAIAIN----SSK----ATYRSNKSAALIGLG-RQIEALVECKEAIRI----DPC----------Y 326 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~----------~ 326 (713)
..+|+++.|..+|.++-... |+. ...+++.|......+ ++++|+..++++.++ .+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46777788888877775543 322 346677777777777 888888888777776 111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHH---HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 327 HRAHHRLAMLYFRLGEAEKAV---SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
..++..++.+|...+.++... ...+.+.. -.|+.+ ..++....+....++.+.+.+.+.+++..-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~------~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKP------EVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCc------HHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 345667777777776655333 33333322 333332 112222222222566666666666666553
|
It is also involved in sporulation []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.013 Score=52.95 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
....++..+...+++++|+..++.++... .+.....+ .-..++.+.+.+|.+++|+..+....... -.+.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l--------~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~ 160 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKAL--------AALRLARVQLQQKKADAALKTLDTIKEES-WAAI 160 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHH
Confidence 45667889999999999999999998643 33332221 11269999999999999999887644321 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.-..+|.++...|+.++|+..|+++++.+++..
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 466789999999999999999999999876543
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.16 Score=48.18 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=99.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-H
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE-K 345 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~ 345 (713)
++.+...-..|+.+-..+|.++|.+..+|..+-.++..++ +..+-++++.+.++-+|.+..+|...-.+....|++. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 3445667788999999999999999999988888887765 6788899999999999999999999999999999988 7
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
-++..+.++. .+..+. .++..+-.+....+.|+.-+.+....|..+-
T Consensus 132 ELef~~~~l~-~DaKNY------HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 132 ELEFTKLMLD-DDAKNY------HAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred hHHHHHHHHh-ccccch------hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 8889999988 777763 4444455555556666666666666665543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=42.02 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999853
|
... |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0025 Score=55.76 Aligned_cols=67 Identities=9% Similarity=0.198 Sum_probs=50.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
..+++.|++ |++|+...|.+.++.+++ +++.++.|++|.. ..++..++|.
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 98 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIE 98 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCC
Confidence 456777888 999999999998877654 2566666666533 3567789999
Q ss_pred cccEEEEEE-CCeEeeee
Q 005125 680 SIPAFKIYK-NGSRVKEI 696 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~ 696 (713)
.+|++.++. +|+.+.+.
T Consensus 99 ~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 99 GIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCEEEEECCCCCEEccc
Confidence 999999996 78766543
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.6 Score=49.83 Aligned_cols=101 Identities=9% Similarity=-0.034 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA-ALIGLGRQIEALVECKEAIRIDPCY---HRAH 330 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 330 (713)
-|.--..|...|..-++.|..+.++..|++++.--|...+.|..+-. +-...|+.+.-...|++|+.....+ ...|
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 34445566777777777777777777777777777776666654433 3334466666667777777664433 3445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
-.+-..-..++++..-...|++.++
T Consensus 155 dkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 155 DKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHh
Confidence 5555555566677777777777766
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=67.50 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=79.5
Q ss_pred eeecchhHHHHHhhcCC--ceEEEeec--CchhHHHHHHHH---HHHHhCCCcEEEEEeCCCc----HhhHHHcCCCccc
Q 005125 614 VFVSSNERFRHFVTSPG--MAVVLFCS--KAEHKQVLQLME---QVCKRFPSVNFLKVEVEDH----PYIAKSEGVSSIP 682 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~~--~~vv~f~~--cg~c~~~~~~~~---~l~~~~p~~~~~~v~~d~~----~~~~~~~~v~~~P 682 (713)
+.+.+..+.++.+.+.. ++++.|++ |-.|+.+.++.- ++..+.++++.+++|+... .++.+++++.++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 44445556777776666 88888999 999999998743 3445568999999998864 3566789999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++++|. +|++...++|. +.+.+.++|++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999998 78888779999 9999999998764
|
|
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0029 Score=55.33 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=49.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcH-------------------------hhHHHcCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHP-------------------------YIAKSEGV 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~-------------------------~~~~~~~v 678 (713)
+.+++.|++ |++|+...|.++++.+.+. ++.++.|+.|..+ .++..++|
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 97 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKV 97 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCC
Confidence 456666888 9999999999998876652 4667777666432 45667999
Q ss_pred CcccEEEEEE-CCeEeee
Q 005125 679 SSIPAFKIYK-NGSRVKE 695 (713)
Q Consensus 679 ~~~Pt~~~~~-~g~~~~~ 695 (713)
.++|+++++. +|+.+.+
T Consensus 98 ~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 98 EGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCEEEEECCCCCEEch
Confidence 9999999886 5766543
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.73 Score=49.72 Aligned_cols=187 Identities=19% Similarity=0.114 Sum_probs=103.6
Q ss_pred CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HH---HHHHHHHHHHHcCCHHHHHHH
Q 005125 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK------AT---YRSNKSAALIGLGRQIEALVE 315 (713)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~---~~~~la~~~~~~g~~~~A~~~ 315 (713)
++|+++.+ +..+|..|..+|......-.++.|...|-+.-.. |.- .. --...|.+-.--|++++|.+.
T Consensus 680 edA~qfiE--dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 680 EDAIQFIE--DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred HHHHHHHh--cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 44555554 3456788999999988888888888887765322 111 00 012345555566888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 316 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
|-.+-.. + .--.++..+|++-.-.+.++..-. +.+....-.++.+.+..+..+..|++|.++|...
T Consensus 757 yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~- 822 (1189)
T KOG2041|consen 757 YLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC- 822 (1189)
T ss_pred hhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 7654221 1 112345566666666655543222 1111223345666777777777788887777654
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
....+...+|..+.+|++-..+.+...+..+ .+-.+|..+...|.-++|.+.|
T Consensus 823 --------~~~e~~~ecly~le~f~~LE~la~~Lpe~s~--------------llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 823 --------GDTENQIECLYRLELFGELEVLARTLPEDSE--------------LLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred --------cchHhHHHHHHHHHhhhhHHHHHHhcCcccc--------------hHHHHHHHHHhhchHHHHHHHH
Confidence 1223345666666666655555444433222 3333455555555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.55 Score=48.26 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------------------------
Q 005125 449 LLIVRAQVYIAAGR-FEDAVKTAQDAAQIDPNNKEVIKGVKMAK------------------------------------ 491 (713)
Q Consensus 449 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~------------------------------------ 491 (713)
-+...|.-+.+.|. -++|+..++.+++..+.+.+..+..-..-
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 44555667777777 78899999999998888876554321110
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---HHH
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL---EAA 568 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~---~~A 568 (713)
.+.-...=|.-++.+|+|.++.-+-.=..+++| .+.++..+|.|++...+|++|..++... |-+.+.+- .+|
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~dskvqKA 535 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDSKVQKA 535 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHHHHHHH
Confidence 011122334556778999999888888888889 8899999999999999999999887642 22333332 556
Q ss_pred HHHHHHHH
Q 005125 569 IQDYEMLI 576 (713)
Q Consensus 569 ~~~~~~al 576 (713)
+...++-+
T Consensus 536 l~lCqKh~ 543 (549)
T PF07079_consen 536 LALCQKHL 543 (549)
T ss_pred HHHHHHhh
Confidence 55555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.051 Score=56.17 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----------------------hccccHHHHHHHHHHHHHHHH
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL----------------------ANQKDIAKAEALHKHLTKCNE 377 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------~~p~~~~~~~~~~~~~~~~~~ 377 (713)
+..+|-+.+++..++.++..+|+++.|.+.+++|+-. ++-.......-+.+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3445666666666666666666666666555555431 111111122334556666777
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh-hhHHhhhcccCcHHHHHHHHH
Q 005125 378 ARELKRWNDLLKETQNVISFGAD-SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL-EYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 378 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~lg~ 455 (713)
..+.|-|..|++..+-.+.++|. ++-.+.+.+-...++.++|+--++.++....... ++.. .-+...+.++.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~------~lPn~a~S~aL 186 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS------LLPNFAFSIAL 186 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh------hCccHHHHHHH
Confidence 88899999999999999999999 5445666666677788899888887776544211 1011 12346677888
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhCCCCH
Q 005125 456 VYIAAGRF---------------EDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 456 ~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 481 (713)
+++..++- ++|...+.+|+...|.-.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 88888888 899999999999887643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.052 Score=56.11 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=110.6
Q ss_pred HHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh-----c-----------ccCc---HHHHHHHH
Q 005125 394 VISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF-----G-----------LAGG---AYLLIVRA 454 (713)
Q Consensus 394 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~-----------~~~~---~~~~~~lg 454 (713)
.++..|-+. ..+..++.++...|+++.|.+.+++|+-.........+ . ...+ -.+++...
T Consensus 32 ll~~~PyHi-dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 32 LLQKNPYHI-DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345566665 67777888888888888888888887533221111111 0 0011 22455667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-----CCHH
Q 005125 455 QVYIAAGRFEDAVKTAQDAAQIDPN-NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-----YNSV 528 (713)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~ 528 (713)
..+.+.|-+..|.++.+-.+.++|. ++-...+ .+-....+.++|+--++.++....... .-|.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll-----------~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn 179 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL-----------FIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN 179 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH-----------HHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc
Confidence 7788899999999999999999999 6644432 355556777888877887776555211 1346
Q ss_pred HHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCChHHHH
Q 005125 529 LLCNRAACRSKLGQY---------------EKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 529 ~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.-+.++.++..+++. ++|...+.+|+...|.-....+
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll 231 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLL 231 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHH
Confidence 778888999999998 8999999999998887655544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.005 Score=47.85 Aligned_cols=68 Identities=12% Similarity=0.308 Sum_probs=46.8
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHH-----cCCCcccEEEEEECCeEeeeecCCCHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKS-----EGVSSIPAFKIYKNGSRVKEIPGHQCELLE 705 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 705 (713)
+.+|++ |++|+.+.+++.++. +.+..+|++..+..... +++.++|++ ++.+|..+. ..+..+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 556776 999999999987653 45567888877766555 389999987 466775433 33445555
Q ss_pred HHHH
Q 005125 706 KSVK 709 (713)
Q Consensus 706 ~~~~ 709 (713)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.78 Score=48.23 Aligned_cols=153 Identities=8% Similarity=-0.035 Sum_probs=100.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR- 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 332 (713)
.+|.|.++|+.+-..+..+ -+++....|++.+...|..+.+|.......+..++|+.-...|.++|..--+ .+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 7899999999999988777 9999999999999999999999999999999999999999999999864322 444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHHHHH------HHHhhcHHHHHHHHHHHHHcCCCChH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSL---ANQKDIAKAEALHKHLTKCNE------ARELKRWNDLLKETQNVISFGADSAP 403 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~~p~~~~ 403 (713)
|-.+-...|+...+....-+|... ..--+.........+..-... +.+..+.+.....|++++..--.+..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 334444556655544444444330 111111111112222222222 22233445556778888877666666
Q ss_pred HHHHH
Q 005125 404 QVYAL 408 (713)
Q Consensus 404 ~~~~~ 408 (713)
.+|..
T Consensus 173 kLW~D 177 (656)
T KOG1914|consen 173 KLWKD 177 (656)
T ss_pred HHHHH
Confidence 66654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.29 Score=49.51 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK 539 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 539 (713)
..|+..|.++.... +..+.. .+|.+|.. ..++.+|+.+|.++.+... ....+.++ ++..
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~------------~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~ 234 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQL------------LLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL 234 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHH------------HHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh
Confidence 57888888887766 444444 57777654 4589999999999998876 88888888 7776
Q ss_pred cC
Q 005125 540 LG 541 (713)
Q Consensus 540 ~g 541 (713)
.|
T Consensus 235 ~g 236 (292)
T COG0790 235 NG 236 (292)
T ss_pred cC
Confidence 66
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.098 Score=53.47 Aligned_cols=124 Identities=12% Similarity=0.027 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR---LGEAEKAVSHYK 351 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 351 (713)
.+.-+.+|++|++.+|++...+..+-.+.....+.++..+.+++++..+|++...|..+-..... .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56778999999999999999999988899999999999999999999999998888765544433 235778888888
Q ss_pred HHhhhhcccc-----------HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 352 KSSSLANQKD-----------IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 352 ~al~~~~p~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
+++..+.... ......+..++..+....+.|..+.|+..++..++++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8877211110 0122334444555555556666666666666665553
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0037 Score=65.86 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=75.3
Q ss_pred hHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE-
Q 005125 620 ERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR- 692 (713)
Q Consensus 620 ~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~- 692 (713)
..|...+ ......++.|++ |++|+.+.|.+++++..+ ..+.+..+|++..+.++..++|...||+.+|+.|..
T Consensus 152 ~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~ 231 (383)
T KOG0191|consen 152 DNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEED 231 (383)
T ss_pred cchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcc
Confidence 3444433 445667777777 999999999999998765 568999999998999999999999999999999888
Q ss_pred eeeecCC-CHHHHHHHHHhh
Q 005125 693 VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~ 711 (713)
.....|. +.+.|..|+...
T Consensus 232 ~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 232 IYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred cccccccccHHHHHHHHHhh
Confidence 5556666 999999999765
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.054 Score=44.42 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=68.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-------c
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKE----VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-------H 522 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~ 522 (713)
|.-.+..|-|++|...+++|+++...-+. -+... ...++-.|+.++..+|+|++++..-.+++. +
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF----DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF----DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH----HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 44556678999999999999987543321 11111 122333688899999999999888887774 4
Q ss_pred CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 523 EAYNSV----LLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 523 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+.+... +-+++|..+..+|+.++|+..|+.+-++
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 555433 4568899999999999999999998765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.17 Score=54.21 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHcCCH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH----------HRLAMLYFRLGEA 343 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~ 343 (713)
..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +. .... ...|.+-..-|++
T Consensus 678 gledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 34555554 34455 4789999999888877777777777665321 11 1112 2334445556889
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHccCHHHH
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA-DSAPQVYALQAEALLRLQRHQEA 422 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A 422 (713)
++|...|-.+-+ .+ ........+|+|-...+.++..-.-.. .....++..+|..+..+..|++|
T Consensus 751 eeaek~yld~dr----rD-----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 751 EEAEKLYLDADR----RD-----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hHhhhhhhccch----hh-----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888865433 11 112344567788777666554221111 11237889999999999999999
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
.++|.+.-.. -++..+|+...+|++-..+ ...-|++.+.+. .+|..
T Consensus 816 ~~yY~~~~~~------------------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp------------~~a~m 861 (1189)
T KOG2041|consen 816 AKYYSYCGDT------------------ENQIECLYRLELFGELEVL----ARTLPEDSELLP------------VMADM 861 (1189)
T ss_pred HHHHHhccch------------------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHH------------HHHHH
Confidence 9999876432 2246777777777764433 334566666655 35666
Q ss_pred HHHcccHHHHHHHHHH-------------------HhccC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 503 LFKASKYKEACYAYSE-------------------GLEHE-----AYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~-------------------al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
+...|.-++|+++|-+ |+++. |.-.......+.-+...++.-+|++.++++
T Consensus 862 f~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 6666666666665533 22221 111222223344556777788888877776
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.49 Score=47.85 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=119.8
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL----GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----L 340 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 340 (713)
....+++..|+..+..+-.. .+......++.+|..- .+..+|+.+|+.+ ....++.+.+.||.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence 34567788888888887662 2336777778777653 4678888888844 445667888889988887 4
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL---- 416 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~---- 416 (713)
.++.+|..+|+++.. ...... ......+|.+|..-
T Consensus 127 ~d~~~A~~~~~~Aa~-~g~~~a----------------------------------------~~~~~~l~~~~~~g~~~~ 165 (292)
T COG0790 127 LDLVKALKYYEKAAK-LGNVEA----------------------------------------ALAMYRLGLAYLSGLQAL 165 (292)
T ss_pred cCHHHHHHHHHHHHH-cCChhH----------------------------------------HHHHHHHHHHHHcChhhh
Confidence 488888888888877 322210 01233333333332
Q ss_pred -c--CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 417 -Q--RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489 (713)
Q Consensus 417 -g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 489 (713)
- +...|+..|.++-... .+.+.+.+|.+|.. ..++.+|..+|.++.+... .....
T Consensus 166 ~~~~~~~~A~~~~~~aa~~~------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~---- 227 (292)
T COG0790 166 AVAYDDKKALYLYRKAAELG------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY---- 227 (292)
T ss_pred cccHHHHhHHHHHHHHHHhc------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH----
Confidence 1 2246777777765433 35577888888865 4589999999999998776 44444
Q ss_pred HHHHHHHHHHHHHHHHcc---------------cHHHHHHHHHHHhccCC
Q 005125 490 AKAMASARLRGNLLFKAS---------------KYKEACYAYSEGLEHEA 524 (713)
Q Consensus 490 ~~~~~~~~~lg~~~~~~g---------------~~~~A~~~~~~al~~~p 524 (713)
.++ +++..| +...|...+..+....+
T Consensus 228 --------~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 228 --------NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred --------HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 466 666555 55555555555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0014 Score=42.23 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
|.+||.+|..+|++++|+.+|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666777777777666665443
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0038 Score=53.27 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=55.4
Q ss_pred cccccceeecc-hhHHHHHhhcCCceEEEeec--CchhHHHHHHHH---HHHHhC-CCcEEEEEeCCCcH-hhHHHcCCC
Q 005125 608 KFGSNLVFVSS-NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLME---QVCKRF-PSVNFLKVEVEDHP-YIAKSEGVS 679 (713)
Q Consensus 608 ~~g~~i~~~~~-~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~---~l~~~~-p~~~~~~v~~d~~~-~~~~~~~v~ 679 (713)
|||+.+....+ .+.....-....+.++.|++ |++|+.+...+- .+.+.. .+.+.+.++.|.-. ... ..+ .
T Consensus 1 g~~~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~ 78 (130)
T cd02960 1 GWGDDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-Q 78 (130)
T ss_pred CCcccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-c
Confidence 56776666532 33334444556777777888 999999987542 122221 13455566655221 111 133 5
Q ss_pred cccEEEEEE-CCeEeeeecCC
Q 005125 680 SIPAFKIYK-NGSRVKEIPGH 699 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~~g~ 699 (713)
.+||++|+. +|+.+.+++|.
T Consensus 79 ~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 79 YVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred ccCeEEEECCCCCCccccccc
Confidence 799999994 78999999997
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=47.03 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=53.6
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcC--CCcccEEEEEECCeEeeeecCCCHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEG--VSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
.+++|+. |+.|..+.++|+++...+.++.+..+|++..+ ++....+ +.++|++ |.+|+.++ |. +.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i--fi~g~~ig---g~--~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI--FVDQKHIG---GC--TD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE--EECCEEEc---CH--HH
Confidence 4666776 99999999999999987667889999988643 4544444 5789984 57887643 44 66
Q ss_pred HHHHHHhh
Q 005125 704 LEKSVKLY 711 (713)
Q Consensus 704 ~~~~~~~~ 711 (713)
|.++++.+
T Consensus 75 ~~~~~~~~ 82 (85)
T PRK11200 75 FEAYVKEN 82 (85)
T ss_pred HHHHHHHh
Confidence 77776654
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.22 Score=52.24 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhcc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEH---EAY----NSVLLCNRAACRSKLGQ-YEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 560 (713)
-+|.++..+|+-..|..+|..+++. ... .|.+++.+|..|..+|. ..+|.+++.+|-+...++
T Consensus 454 L~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 454 LKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 5899999999999999999988843 111 27889999999999999 999999999998877554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.067 Score=50.61 Aligned_cols=200 Identities=11% Similarity=0.111 Sum_probs=120.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcC
Q 005125 272 KARFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI-----DPCY-HRAHHRLAMLYFRLG 341 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~g 341 (713)
..+.++|+.-|++++++.+... .++-.+..+++++++|++-+..|.+.+.. ..++ ......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4588999999999999988754 46777888999999999999999988753 1122 112222222112223
Q ss_pred CHHHHHHHHHHHhhhh-ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----------ChHHHHHHH
Q 005125 342 EAEKAVSHYKKSSSLA-NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-----------SAPQVYALQ 409 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~l 409 (713)
+.+--.++|+..+..+ +..+ ....+.....++..+...+.|.+..+.+++.-+.... ...++|..-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKN--eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKN--ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhc--ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 3333333444333310 1111 1112233456677777777777666555554332211 112566666
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
...|....+-..-...|++++.+....+..++ -..+.-.-|..+...|+|++|-..|-+|.+..
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI----mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLI----MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHH----HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 77888888888888889988766433211110 01122223566788899999999998888754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0052 Score=63.27 Aligned_cols=108 Identities=27% Similarity=0.315 Sum_probs=95.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL---GRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.-|.+.+.++.-|+-.+..+....|+..|.+++...|.....+.+++.++++. |+.-.|+..+..|+.++|....+|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 34566677888888888888999999999999999999999999999999875 677889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.|+.++..++++.+|+++...+.. ..|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~-~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQM-SFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhh-cCchhh
Confidence 9999999999999999998887776 777653
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=47.45 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=76.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 005125 265 MGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGR-----------QIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 330 (713)
+|..++..|++-+|+++.+..+...+++. ..+...|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988765 556667887765532 3568999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+.+|.-+.....|++++.-.++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 9999888777788888888888877
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.17 Score=49.04 Aligned_cols=80 Identities=13% Similarity=0.267 Sum_probs=59.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----------HhhHHHcCCCcccEEEEEE-CCeEee-e
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----------PYIAKSEGVSSIPAFKIYK-NGSRVK-E 695 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----------~~~~~~~~v~~~Pt~~~~~-~g~~~~-~ 695 (713)
..+++|+. |+.|.++.|++..++++|+ +.++.|++|-. ..++..+||..+|++.+.. ++..+. -
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv 230 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPL 230 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEE
Confidence 44555555 9999999999999999985 77777777754 3478899999999876665 433333 3
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
-.|. +.++|.+.|...
T Consensus 231 ~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 231 AYGFISQDELKERILNV 247 (256)
T ss_pred eeccCCHHHHHHHHHHH
Confidence 4466 889988877543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=67.39 Aligned_cols=80 Identities=14% Similarity=0.266 Sum_probs=61.5
Q ss_pred cccceeecchhHHHHHhhcCC-ceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCC--CcHhhHHHcCCCc
Q 005125 610 GSNLVFVSSNERFRHFVTSPG-MAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVE--DHPYIAKSEGVSS 680 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~~~~-~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d--~~~~~~~~~~v~~ 680 (713)
++.+..+ +.+.|...+.... ..+|.|++ ||+|+.+.|.|+++++.. |-+.+..||+. .+..++..++|..
T Consensus 38 ~D~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 38 DDPIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 3444444 4567887775554 67777888 999999999999998664 44677777765 4668999999999
Q ss_pred ccEEEEEECC
Q 005125 681 IPAFKIYKNG 690 (713)
Q Consensus 681 ~Pt~~~~~~g 690 (713)
.|++.+|.-+
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999743
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.075 Score=54.30 Aligned_cols=153 Identities=12% Similarity=-0.035 Sum_probs=107.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 280 ALYDRAIAINSSKATYRSNKSAALIGLGR------------QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 280 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
.-|++.++.+|.+..+|..+....-..-. .+.-+..|++||+.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45777888889998888888776554432 456788999999999999999999888999999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHH----HHHHHHhhcHHHHHHHHHHHHHcC---CC-------ChHHHHHHHHHHH
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTK----CNEARELKRWNDLLKETQNVISFG---AD-------SAPQVYALQAEAL 413 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~~la~~~ 413 (713)
.-+++++. ..|.+...+..+..+... .....-...|.+++..+....... .. ....++..+....
T Consensus 86 ~~we~~l~-~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLF-KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHH-HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999 999887655544333222 112222334444444444333322 00 1124555667777
Q ss_pred HHccCHHHHHHHhhccccCC
Q 005125 414 LRLQRHQEAHDSYNKSPKFC 433 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~ 433 (713)
...|..+.|+..++..++++
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 88999999999999887754
|
|
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.01 Score=52.29 Aligned_cols=67 Identities=10% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC---------CCcEEEEEeCCCcH-------------------------hh
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---------PSVNFLKVEVEDHP-------------------------YI 672 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---------p~~~~~~v~~d~~~-------------------------~~ 672 (713)
.+.+++.|++ |++|+...|.+.++.+++ .++.++.|+.|+.. .+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 3566777999 999999999999876533 14777777776421 35
Q ss_pred HHHcCCCcccEEEEEE-CCeEeee
Q 005125 673 AKSEGVSSIPAFKIYK-NGSRVKE 695 (713)
Q Consensus 673 ~~~~~v~~~Pt~~~~~-~g~~~~~ 695 (713)
+..|+|.++|+.+++. +|+.+..
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEee
Confidence 6677899999988876 5666543
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.76 Score=45.95 Aligned_cols=203 Identities=12% Similarity=0.022 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKA-RFEDALALYDRAIAI----NSS---K-------ATYRSNKSAALIGLGRQI---EALVECKEAIR 321 (713)
Q Consensus 260 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p~---~-------~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 321 (713)
..+++.|...+..+ ++++|+.++++++++ .+. . ..++..++.+|...+.++ +|....+.+-.
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 46899999999999 999999999999987 221 1 346788899999887764 34445555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-cccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD 400 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 400 (713)
..|+.+..+...-.++...++.+++.+.+.+++...+ ++.. +...+.....+.. .....+...+...+.....
T Consensus 116 e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~-----~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 116 EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESN-----FDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccch-----HHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC
Confidence 6788777776666666668999999999999988333 2221 1111111111111 2234455555555433211
Q ss_pred ChHHHHHHH---HHHHHHcc--C------HHHHHHHhhcc-----ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHH
Q 005125 401 SAPQVYALQ---AEALLRLQ--R------HQEAHDSYNKS-----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFE 464 (713)
Q Consensus 401 ~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 464 (713)
.....+... -.++...+ + .+.....+... -.+.+..... .-.++-+.|...++.++|+
T Consensus 190 ~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a------~~~LLW~~~~~~~~~k~y~ 263 (278)
T PF08631_consen 190 SSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA------IHTLLWNKGKKHYKAKNYD 263 (278)
T ss_pred CChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH------HHHHHHHHHHHHHhhcCHH
Confidence 111101111 11122111 1 22222222211 1112211111 1234556788999999999
Q ss_pred HHHHHHHHHH
Q 005125 465 DAVKTAQDAA 474 (713)
Q Consensus 465 ~A~~~~~~al 474 (713)
+|+.+|+-++
T Consensus 264 ~A~~w~~~al 273 (278)
T PF08631_consen 264 EAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHH
Confidence 9999999776
|
It is also involved in sporulation []. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0096 Score=43.98 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=46.9
Q ss_pred EEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECC
Q 005125 634 VLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNG 690 (713)
Q Consensus 634 v~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g 690 (713)
++|+. |+.|..+.+.+.++....+++.+..++++..+.... .+++..+|+++++..|
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 34555 999999999999884445789999999998877655 7889999999998876
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0043 Score=38.86 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+++.+|.++.++|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777777765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0046 Score=38.74 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS 291 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 291 (713)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.1 Score=45.92 Aligned_cols=73 Identities=3% Similarity=-0.143 Sum_probs=47.8
Q ss_pred hhHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 249 QCISS--LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 249 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
++.++ .+|.+.-.|+.+-..+-.+|.+++-.+.|++...-.|-...+|...-.--...+++..-...|-+++.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 44444 67777778888888888888888888888887777776655554443333344555555555555554
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=48.02 Aligned_cols=59 Identities=19% Similarity=0.410 Sum_probs=44.8
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcH-------------------------hhHHHcCCCc
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHP-------------------------YIAKSEGVSS 680 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~-------------------------~~~~~~~v~~ 680 (713)
.+++.|++ |++|+...|.+.++.++++ ++.++.|..|+.. .+...++|..
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~ 82 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGING 82 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCc
Confidence 46777888 9999999999999999987 7888888877631 3555668888
Q ss_pred ccEEEEEEC
Q 005125 681 IPAFKIYKN 689 (713)
Q Consensus 681 ~Pt~~~~~~ 689 (713)
+|+++++..
T Consensus 83 iP~~~lld~ 91 (95)
T PF13905_consen 83 IPTLVLLDP 91 (95)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEECC
Confidence 998887764
|
... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.4 Score=54.66 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM-LYFRL 340 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~ 340 (713)
+...-......|++..|..+|++++..+|+....+...-......|.+...+...+-.....++...-|+.++. +-.+.
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 34444555668999999999999999999988777777778888888888888777666655555555555442 22344
Q ss_pred CCHHHHHHHHH-------------HH-hhhhccccHHHH-HHHHHHHHH----HHHHHHhhcHHHHHHHHHHH-------
Q 005125 341 GEAEKAVSHYK-------------KS-SSLANQKDIAKA-EALHKHLTK----CNEARELKRWNDLLKETQNV------- 394 (713)
Q Consensus 341 g~~~~A~~~~~-------------~a-l~~~~p~~~~~~-~~~~~~~~~----~~~~~~~~~~~~A~~~~~~a------- 394 (713)
++++.-..+.. ++ +. ....+.... ..+...... .......+-|..+.+..-+.
T Consensus 1532 ~qwD~~e~~l~~~n~e~w~~~~~g~~ll~-~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1532 SQWDLLESYLSDRNIEYWSVESIGKLLLR-NKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred cchhhhhhhhhcccccchhHHHHHHHHHh-hcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 44444333311 00 11 111111000 000000000 00000011222222211111
Q ss_pred ------HHcCCCCh----HHHHHHHHHHHHHccCHHHHHHHhhccc---cCChhhHHhhhcccCcHHHHHHHHHHHHHcC
Q 005125 395 ------ISFGADSA----PQVYALQAEALLRLQRHQEAHDSYNKSP---KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461 (713)
Q Consensus 395 ------l~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 461 (713)
....++.. ..-|.++...-....+..+-+-.+++++ ...|+.. ...+..|...|.+....|
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~------~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLK------SRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccccc------chhHHHHHHHHHHHHhcc
Confidence 11111111 1223322222222222444444444442 2222221 145789999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CC----------C----
Q 005125 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-AY----------N---- 526 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~----------~---- 526 (713)
+++.|..++-.|.+..+ +.+.. ..|..+...|+-..|+..+++.++.+ |+ .
T Consensus 1685 ~~q~A~nall~A~e~r~--~~i~~------------E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESRL--PEIVL------------ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred cHHHHHHHHHhhhhccc--chHHH------------HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 99999999999888763 34443 68999999999999999999999653 22 1
Q ss_pred --HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHH
Q 005125 527 --SVLLCNRAACRSKLGQY--EKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 527 --~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..+...++......|++ ++-+.+|..+.++.|...+.++
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 22344455555566664 3456889999999997666555
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=44.67 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=46.6
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc----CCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE----GVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
+++|+. |+.|..+..++.+. ++.+..++++..+.....+ ++..+|++.+ +| ..+.|.+++.|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 345555 99999998887652 4667777887665544433 6889998764 45 4678888888887
Q ss_pred HH
Q 005125 707 SV 708 (713)
Q Consensus 707 ~~ 708 (713)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 64
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.021 Score=51.57 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=73.5
Q ss_pred cceeecchhHHHHHhhcCCc---eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 612 NLVFVSSNERFRHFVTSPGM---AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~---~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
.+..+.+...|.+.+..... .+|..+. ..-|..+...+.=+++.||.+.|.++.... -.....|....+|+++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEEE
Confidence 45566788889888865422 2233555 568999999999999999999999998754 34556788899999999
Q ss_pred EECCeEeeeecC------C--CHHHHHHHHHhh
Q 005125 687 YKNGSRVKEIPG------H--QCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~~~~~~~g------~--~~~~~~~~~~~~ 711 (713)
|++|+.++.++. . ..-.|+.||+.+
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999998876543 3 445666676655
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.03 Score=48.06 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred hcCCceEEEeec--CchhHHHHHH-HHH--HHHhC-CCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEE-CC-----eE
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQL-MEQ--VCKRF-PSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYK-NG-----SR 692 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~-~~~--l~~~~-p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~-~g-----~~ 692 (713)
...+..++.|.+ |++|..+.+- |.. +.+.. ...+++.+|++. ...++..+++.++|++.++. .| ..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 344566666777 9999998763 221 22222 257887888764 45789999999999998885 34 35
Q ss_pred eeeecCC-CHHHHHHHH
Q 005125 693 VKEIPGH-QCELLEKSV 708 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~ 708 (713)
+.++.|. ++++|...|
T Consensus 105 ~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEISPEELMTFL 121 (122)
T ss_pred eccccCCCCHHHHHHhh
Confidence 7889999 999988776
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=50.45 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=64.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCC-CcHhhHHHcC--CCcccEEEEEECCeEeeeecC--C-C
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVE-DHPYIAKSEG--VSSIPAFKIYKNGSRVKEIPG--H-Q 700 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~-~ 700 (713)
...++.|++ |+.|+.+.|.+.++.+.++ .+.++.+++. ..+.+...++ +..+|++.++.+|..+....+ . +
T Consensus 33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 112 (127)
T COG0526 33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLP 112 (127)
T ss_pred ceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccCC
Confidence 344555556 9999999999999999987 4899999997 7899999999 999999999999887777766 3 5
Q ss_pred HHHHHHHHH
Q 005125 701 CELLEKSVK 709 (713)
Q Consensus 701 ~~~~~~~~~ 709 (713)
...+.....
T Consensus 113 ~~~~~~~~~ 121 (127)
T COG0526 113 KEALIDALG 121 (127)
T ss_pred HHHHHHHhc
Confidence 555555443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0093 Score=57.22 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
-...|....+.|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 455667778899999999999999999999999999999999999999999999999999999999998877653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.052 Score=47.88 Aligned_cols=85 Identities=21% Similarity=0.112 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
..+..+..+....++.+++..++...--+.|..+..-..-|.++...|+|.+|+..++.+..-.|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 35777888888899999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred cCCHH
Q 005125 340 LGEAE 344 (713)
Q Consensus 340 ~g~~~ 344 (713)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 98865
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.24 Score=47.04 Aligned_cols=226 Identities=11% Similarity=0.141 Sum_probs=132.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc----ccHHHHHHHHHHHHHHHH
Q 005125 306 LGRQIEALVECKEAIRIDPCY----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQ----KDIAKAEALHKHLTKCNE 377 (713)
Q Consensus 306 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p----~~~~~~~~~~~~~~~~~~ 377 (713)
..+.++|+..|++++++.+.. ..++-.+..+++++++|++-.+.|.+.+..+.. +.... .+...+.....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHhh
Confidence 348999999999999998876 457888889999999999999999998772211 11100 01111111111
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCChHHHH----HHHHHHHHHccCHHHHHHHhhccccCChhhH--HhhhcccCcHHHHH
Q 005125 378 ARELKRWNDLLKETQNVISFGADSAPQVY----ALQAEALLRLQRHQEAHDSYNKSPKFCLEYY--TKLFGLAGGAYLLI 451 (713)
Q Consensus 378 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~ 451 (713)
-..++-.++-.+..-.+++-..+. .+| ..+|.+|+..++|.+-...+++.-..+.... +..-....-.++|.
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 111222222111122222222221 222 3579999999988887777766533221110 00000011234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-----CC
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-----YN 526 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~ 526 (713)
.--..|-.+.+-.+-...|++++.+...-+..+. ++.++. --|....+.|+|++|-..|=+|.+... ..
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRE-----CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRE-----CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHH-----cCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 5566777888888888899999987665544432 111111 246778889999999998888887533 22
Q ss_pred HH--HHHHHHHHHHHcC
Q 005125 527 SV--LLCNRAACRSKLG 541 (713)
Q Consensus 527 ~~--~~~~la~~~~~~g 541 (713)
.. -|.-||..+++.|
T Consensus 270 ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 22 3556677777665
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.033 Score=53.63 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=63.6
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.+.-..+.|+.++|...|+.|+.++|++++++..+|.......+.-+|-.+|-+|+.++|.+.+++.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 45566678999999999999999999999999999999999999999999999999999999999887
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0072 Score=38.82 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=10.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
|..||.+|..+|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.43 Score=48.80 Aligned_cols=242 Identities=13% Similarity=0.086 Sum_probs=150.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 005125 280 ALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQ 359 (713)
Q Consensus 280 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p 359 (713)
-.|++++...|-.++.|+....-+...++-+.|+...++++...|. ....++.+|...++-+.-..+|+++.+.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~- 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK- 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH-
Confidence 4577888888888899998888888899999999998888877765 677888888888888888888888776111
Q ss_pred ccHHHHHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh
Q 005125 360 KDIAKAEALHKHLTKCNEARE---LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
..+..+..-.. -++++..-+.+-+-+. ...-+|+..-....+..-.+.|...|-++-+..--.
T Consensus 365 ----------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~ 430 (660)
T COG5107 365 ----------RKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG 430 (660)
T ss_pred ----------HHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 11111111111 1112111111100000 111344444444445555677777777765432100
Q ss_pred HHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 437 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
.+.+++.. -.-|...|++.-|...|+-.+...|+.+.... ..-..+...++-+.|...|
T Consensus 431 --------h~vyi~~A-~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~------------kyl~fLi~inde~naraLF 489 (660)
T COG5107 431 --------HHVYIYCA-FIEYYATGDRATAYNIFELGLLKFPDSTLYKE------------KYLLFLIRINDEENARALF 489 (660)
T ss_pred --------cceeeeHH-HHHHHhcCCcchHHHHHHHHHHhCCCchHHHH------------HHHHHHHHhCcHHHHHHHH
Confidence 11122221 12345688999999999999998888876554 2344566788888899999
Q ss_pred HHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 517 SEGLEHEAYN--SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 517 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+++++.-... ...|-.+-..-..-|+...++..-++..++.|..
T Consensus 490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 9887653322 3455555555566777777777777777777764
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.02 Score=56.09 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=65.1
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 497 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.++-.++.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 378889999999999999999999999999999999999999999999999999999999999887655
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=49.21 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=49.9
Q ss_pred CceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHh-------hHH--HcCCCcccEEEEEECC
Q 005125 630 GMAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPY-------IAK--SEGVSSIPAFKIYKNG 690 (713)
Q Consensus 630 ~~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~-------~~~--~~~v~~~Pt~~~~~~g 690 (713)
...+++|++ |++|..+.|.+++.....| +..++.|.+..-+. ... .++|.++||++-|..+
T Consensus 20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS
T ss_pred CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCC
Confidence 455566664 9999999999999887765 58888888765442 222 4789999999999877
Q ss_pred eEeeeecCCCHHHHHHHHH
Q 005125 691 SRVKEIPGHQCELLEKSVK 709 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~ 709 (713)
+++.+-.-.+.+.|+.+++
T Consensus 100 ~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 100 ERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp -EEEHHHHH-HHHHHHHHH
T ss_pred CccchhhhccHHHHHHHhc
Confidence 5433322227777777765
|
; PDB: 1V9W_A 1WOU_A. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.16 Score=41.82 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHHHccCHHHHHHHhhcccc-------CC
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADS-----------APQVYALQAEALLRLQRHQEAHDSYNKSPK-------FC 433 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 433 (713)
+..+.....-|.|++|...+.+++.....- ....+..|+.++..+|+|++++..-++++. +.
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 444555666789999999999998764221 125667788999999999988777666653 44
Q ss_pred hhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
.+....|+ .+.+..+..+..+|+.++|+..|+.+-++
T Consensus 93 qdeGklWI------aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWI------AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHH------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHH------HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44444443 36778899999999999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=40.17 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.++.+|..+.++|+|++|..+++.+++++|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555554443
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.026 Score=44.86 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=50.7
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcC--CCcccEEEEEECCeEeeeecCCCHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEG--VSSIPAFKIYKNGSRVKEIPGHQCELL 704 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 704 (713)
|++|.. |+.|..+..+++++...++++.+..+|++... .+....+ +.++|.+ |.+|+. +.|. +.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~---igG~--~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKH---VGGC--TDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEE---ecCH--HHH
Confidence 445555 99999999999998877777888888887432 4555555 3789975 567755 4454 666
Q ss_pred HHHHHhh
Q 005125 705 EKSVKLY 711 (713)
Q Consensus 705 ~~~~~~~ 711 (713)
.+++++.
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 6666553
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.026 Score=48.85 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=52.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-----C----------------------cHhhHHHcCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-----D----------------------HPYIAKSEGV 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-----~----------------------~~~~~~~~~v 678 (713)
..+++.|++ |++|....|.+.++.+++. ++.++-|..+ . ...+...+++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v 103 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGN 103 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCC
Confidence 456777888 9999999999999999985 4677766541 1 1235556788
Q ss_pred CcccEEEEE-ECCeEeeeecCC
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGH 699 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~ 699 (713)
..+|++.++ ++|+.+....|.
T Consensus 104 ~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 104 QYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CcCCeEEEECCCCcEEEEEecC
Confidence 899999888 478888888774
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=63.37 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=63.0
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
.+.+|.. |+.|..+...+.+++...|++..-.+|..++|+++..++|.++|+++ .||+.+ ..|. +.++|.+||
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~--i~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIV--VDDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEE--ECCEEE--EeeCCCHHHHHHhh
Confidence 4555656 99999999999999999999999999999999999999999999865 477765 3476 999999887
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.055 Score=43.25 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY--HRAHHRLAMLYFRLGEAEKAVSHYKK 352 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 352 (713)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567788888899999999999999999999999999999888887765 55666666666666664444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.026 Score=39.64 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAA 302 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 302 (713)
+.++.+|..+++.|+|++|..+.+.+++.+|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999998876655443
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.023 Score=43.37 Aligned_cols=64 Identities=14% Similarity=0.339 Sum_probs=46.9
Q ss_pred Eeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc---CCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 635 LFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE---GVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 635 ~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
+|.. |+.|..+..+|++. ++.|-.+|+++.+.....+ |..++|++ +.+|. ..+.|+++++|.++
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v--~~~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVI--VADGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEE--EECCC--cEEeccCHHHHHhc
Confidence 4444 99999999988742 4777788888777655554 78899975 44553 35788899998764
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.73 Score=44.46 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=57.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC--cH---------hhHHHcCCCcccEEEEEEC-C-eEeee
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--HP---------YIAKSEGVSSIPAFKIYKN-G-SRVKE 695 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--~~---------~~~~~~~v~~~Pt~~~~~~-g-~~~~~ 695 (713)
..+++|+. |+.|+++.|++..++++|+ +.++.|.+|- .| ..+..+||..+|++.+..- + +...-
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv 223 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPL 223 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEE
Confidence 44555555 9999999999999999984 6666666653 22 2566899999998777653 3 33344
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
-.|. +.++|.+.|...
T Consensus 224 ~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 224 SYGFITQDDLAKRFLNV 240 (248)
T ss_pred eeccCCHHHHHHHHHHH
Confidence 4577 889998877543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.074 Score=43.52 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=74.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHhc
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS-----------KYKEACYAYSEGLE 521 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~ 521 (713)
++..++..|++-+|++..+..+...+++...|... ...|.+++.+. -+-.|+++|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh---------~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLH---------RLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHH---------HHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 36778899999999999999999999888665321 13555554433 24568899999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 73 Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 73 LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999888888888777777788888888888765
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.049 Score=44.34 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=59.0
Q ss_pred ecchhHHHHHhhc--CCceEEE-eec-CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcH----hhHHHcCCCc-ccEEE
Q 005125 616 VSSNERFRHFVTS--PGMAVVL-FCS-KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHP----YIAKSEGVSS-IPAFK 685 (713)
Q Consensus 616 ~~~~~~~~~~l~~--~~~~vv~-f~~-cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~----~~~~~~~v~~-~Pt~~ 685 (713)
+.+.+++..++.. .++.+++ ... |+-..++...|++.....++ +.++.+|+-+.. .|++.+||.- -|-++
T Consensus 4 L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 4 LTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp --SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred cCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 4566788887766 3343333 222 99999999999998887765 999999998876 5788899985 79999
Q ss_pred EEECCeEeeeecCC--CHHHH
Q 005125 686 IYKNGSRVKEIPGH--QCELL 704 (713)
Q Consensus 686 ~~~~g~~~~~~~g~--~~~~~ 704 (713)
++++|+.|..-.-. +.+.|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 99999998654433 55554
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.00 E-value=2.2 Score=53.03 Aligned_cols=63 Identities=14% Similarity=-0.034 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
...|.+.|.+....|+++.|..+.-+|.+.. -+.++..+|..+...|+...|+..+++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 5567788999999999999999999998877 57899999999999999999999999999664
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.035 Score=43.50 Aligned_cols=73 Identities=19% Similarity=0.381 Sum_probs=54.8
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe----EeeeecCC-CHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS----RVKEIPGH-QCELLE 705 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~----~~~~~~g~-~~~~~~ 705 (713)
+++|.. |+.|..+...+..+....+ +.+-.||+++.+.+...|+. .+|. +..+|. ....+.+. +.+.|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPV--l~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPV--LHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSE--EEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCE--EEEcCcccccccceeCCCCCHHHHH
Confidence 556666 9999999999999877655 89999999999999999985 7996 344551 12334444 999999
Q ss_pred HHHH
Q 005125 706 KSVK 709 (713)
Q Consensus 706 ~~~~ 709 (713)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.081 Score=51.94 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+.++-..|.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+-.....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 44555667777777777777777777777777777777777777777777777777777777777666544433
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.5 Score=49.78 Aligned_cols=223 Identities=14% Similarity=0.046 Sum_probs=138.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
..|.++-.++..+..+...|+.+.|+..++..+...-. ..-.++.+|.++.-+.+|..|-..+....+...-..-.|.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 78888888888899999999988889999888771111 1336678899999999999999999998877655444444
Q ss_pred HHH-HHHHH--------cCCHHHHHHHHHHHhhh------hccccHHHHHHHHHHHHHH----------------HHHHH
Q 005125 332 RLA-MLYFR--------LGEAEKAVSHYKKSSSL------ANQKDIAKAEALHKHLTKC----------------NEARE 380 (713)
Q Consensus 332 ~la-~~~~~--------~g~~~~A~~~~~~al~~------~~p~~~~~~~~~~~~~~~~----------------~~~~~ 380 (713)
.++ .||.. .|+-++|-.+++..... -.|-+....+....+.... ..+..
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 444 33332 23555554444433321 1222222222222222111 11111
Q ss_pred h--hcHHHHHHHHHHHHH---c-CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH
Q 005125 381 L--KRWNDLLKETQNVIS---F-GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA 454 (713)
Q Consensus 381 ~--~~~~~A~~~~~~al~---~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg 454 (713)
. ....+.. .++..+. . ++++..-.+..+|.++..+|+...|..+|...++...... ..+-..+.++|.+|
T Consensus 422 f~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~---~d~w~~PfA~YElA 497 (546)
T KOG3783|consen 422 FSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT---EDLWAVPFALYELA 497 (546)
T ss_pred cccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---cccccccHHHHHHH
Confidence 0 1111111 1111111 1 3444445677889999999999999999998875311111 11113578999999
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 005125 455 QVYIAAGR-FEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 455 ~~~~~~g~-~~~A~~~~~~al~~~p~~ 480 (713)
..|..++. ..++.+++.+|-+...++
T Consensus 498 ~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 498 LLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999999 999999999998876554
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.13 Score=44.56 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=69.2
Q ss_pred eeecchhHHHHHhhcCCceEEEeec----Cc--hhHHHHHHHHHHHHhC-CC-cEEEEEeCCCcHhhHHHcCCCc--ccE
Q 005125 614 VFVSSNERFRHFVTSPGMAVVLFCS----KA--EHKQVLQLMEQVCKRF-PS-VNFLKVEVEDHPYIAKSEGVSS--IPA 683 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~~~~vv~f~~----cg--~c~~~~~~~~~l~~~~-p~-~~~~~v~~d~~~~~~~~~~v~~--~Pt 683 (713)
..+.+.+.+...=...+..++.|.. |. .-..+...+.++++.| +. +.|+++|.+..+.+.+.+||.. .|+
T Consensus 5 ~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~ 84 (130)
T cd02983 5 IELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPA 84 (130)
T ss_pred EEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCE
Confidence 3344433444322234555666654 32 2346778899999988 55 8999999999999999999954 999
Q ss_pred EEEEECCeEeee-ecCC-CHHHHHHHHHhhh
Q 005125 684 FKIYKNGSRVKE-IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~~~g~~~~~-~~g~-~~~~~~~~~~~~~ 712 (713)
+.++...+..-. ..|. +.+.|.+|++.+.
T Consensus 85 v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 85 MVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred EEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 998876432322 5577 9999999999874
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.036 Score=61.03 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=64.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
+..+.+|+. |+.|..+...+.+++...|.+.+-.+|..++|+++..++|.++|++. .+|+.+ +.|. +.++|.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~--i~~~~~--~~g~~~~~~~~~ 192 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVF--LNGEEF--GQGRMTLEEILA 192 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEE--ECCcEE--EecCCCHHHHHH
Confidence 445666777 99999999999999999899999999999999999999999999874 477644 4466 7778877
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
.+.+
T Consensus 193 ~~~~ 196 (517)
T PRK15317 193 KLDT 196 (517)
T ss_pred HHhc
Confidence 7754
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.079 Score=41.44 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=50.8
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
.+.+|.. |+.|..+..+|++. ++.|-.+|++..+..+. ..|..++|+++ .++ ..+.|+++++|.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~--i~~---~~~~Gf~~~~l~~ 71 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVI--AGD---LSWSGFRPDMINR 71 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEE--ECC---EEEecCCHHHHHH
Confidence 3566776 99999999888542 57888889887775433 34778999874 355 3577999999999
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
++-.
T Consensus 72 ~~~~ 75 (81)
T PRK10329 72 LHPA 75 (81)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.02 Score=55.16 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=35.0
Q ss_pred eCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 665 EVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 665 ~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+++.+..+++.+||.++|+|+ |.+|+.+ +|+ +++.|.++|++.
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 344556788889999999988 7788764 898 899999999864
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.16 Score=44.85 Aligned_cols=85 Identities=20% Similarity=0.088 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH
Q 005125 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 448 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 527 (713)
..+..+..+-...++.+++...+...--+.|..++... .-|.++...|+|.+|+..|+.+.+..|..+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~------------~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDL------------FDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHH------------HHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 35666777778889999999999988889999998887 489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHH
Q 005125 528 VLLCNRAACRSKLGQYE 544 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~ 544 (713)
.+--.++.|+..+|+.+
T Consensus 79 ~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 79 YAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHHcCChH
Confidence 99999999999999853
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.3 Score=44.50 Aligned_cols=365 Identities=9% Similarity=-0.046 Sum_probs=221.6
Q ss_pred CCCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHH-HHhcC
Q 005125 201 HCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEA-YNKAR 274 (713)
Q Consensus 201 ~~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~-~~~g~ 274 (713)
+..++...+-..|...|..-|- ... . | .-.+..-.+.| +.+...+++ .-|...+.|...-... -..|+
T Consensus 56 ~~~~~~~~~r~~y~~fL~kyPl--~~g-y--W-~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d 129 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFLSKYPL--CYG-Y--W-KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGD 129 (577)
T ss_pred CchhHHHHHHHHHHHHHhhCcc--HHH-H--H-HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCC
Confidence 3334444666778888877763 111 1 1 12455555555 567888887 5567777666544333 35688
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHH
Q 005125 275 FEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL------GEAEK 345 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~ 345 (713)
.+.-...|++|+.....+ ...|-..-.....++++..-...|++.+++--....-++..=.-+... -..++
T Consensus 130 ~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 130 PETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHH
Confidence 888889999999876543 446666666667889999999999999987444333333222222221 12222
Q ss_pred HHHHHHHHhh-------------------h-hccccH--HHHHHHHHH-HHHHHHHHHhhcHHHHHHHHHHHHHc-----
Q 005125 346 AVSHYKKSSS-------------------L-ANQKDI--AKAEALHKH-LTKCNEARELKRWNDLLKETQNVISF----- 397 (713)
Q Consensus 346 A~~~~~~al~-------------------~-~~p~~~--~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~----- 397 (713)
+.+.-..... . .+|... .....+... ...-.++.....+.+.+..++..+..
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 2221111110 0 000000 000000000 01111122223344444445555443
Q ss_pred CCCChH--HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 398 GADSAP--QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 398 ~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
.|-+.+ ..|......-...|+++...-.|++++--+..+ ...|...+......|+.+-|...+..+.+
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y----------~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY----------DEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh----------HHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 333333 344555666678999999999999997655443 34778888888888999999999988888
Q ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH---HHH
Q 005125 476 ID-PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE---DCT 551 (713)
Q Consensus 476 ~~-p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~ 551 (713)
+. |..+.... .-+..-...|++..|...|++..+..|+...+-...+......|+.+.+.. ++.
T Consensus 360 i~~k~~~~i~L------------~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 360 IHVKKTPIIHL------------LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred hcCCCCcHHHH------------HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 65 44444443 356666778999999999999998889999998888889999999999884 333
Q ss_pred HHHHhCCCC--hH------HHH--------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 552 AALIVMPSY--SK------ARL--------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 552 ~al~~~p~~--~~------a~~--------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
....-.-+. .. +++ +.|...+.+++...|.+......+....
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 333221111 11 111 8888999999999999987766655443
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.029 Score=44.40 Aligned_cols=58 Identities=17% Similarity=0.431 Sum_probs=42.4
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH-----hhHHHcCCCcccEEEEEECCeEe
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP-----YIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
|++|+. |+.|..+.+++.++.-. +...++.++.+..+ .+....++.++|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 355666 99999999999987622 34678888876543 36666789999986 6678654
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.015 Score=35.71 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.++..+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777777777777777777777776664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.14 Score=46.12 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=68.8
Q ss_pred ccccccceeecchhHHHHHhhc--CCceEEE-eec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTS--PGMAVVL-FCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~--~~~~vv~-f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||.. ..|+ .++|...+.. .+..|++ .+. .+.|..+...|++++.+||.+.|+++....+ ...|.-..+
T Consensus 88 ~kfG~V-~~IS-g~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nl 162 (240)
T KOG3170|consen 88 AKFGEV-FPIS-GPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNL 162 (240)
T ss_pred hcccce-eecc-chHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCC
Confidence 457744 4443 3466554433 3444444 444 5799999999999999999999999987654 122334569
Q ss_pred cEEEEEECCeEeeeec------CC--CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIP------GH--QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~------g~--~~~~~~~~~~~~ 711 (713)
||+++|..|.....+. |. +++.+..++-+.
T Consensus 163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999999987766554 44 788888887554
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.09 Score=49.11 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=56.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC--------------------CcHhhHHHcCCCcccEEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE--------------------DHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d--------------------~~~~~~~~~~v~~~Pt~~~ 686 (713)
...+++.|++ |+.|+...|.+.++.+.+ ++.++-+..+ ....+...|+|..+|+..+
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 3457777888 999999999999988765 3333333322 1235667889999997655
Q ss_pred E-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 687 Y-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 687 ~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+ ++|+.+..-.....+.++++++..
T Consensus 153 ID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 153 LDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred ECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 5 578777653323677888888754
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.019 Score=52.92 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 501 NLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999999999999999999999999999999999999999875
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.11 Score=49.20 Aligned_cols=74 Identities=20% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC-----CCC
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG-----ADS 401 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~ 401 (713)
+..+..+|++|..+|+.+....++++|+. .|.+++... +.+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----------------------------------~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALE----------------------------------FYEEAYENEDFPIEGMD 163 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHH----------------------------------HHHHHHHhCcCCCCCch
Confidence 45677788888888886665555555554 233333221 112
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
...+.+.+|.++.+.|++++|+.+|.+++....
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 236778899999999999999999999887543
|
|
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.12 Score=43.25 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=65.8
Q ss_pred HHhhcCCceEEEeecCchhHHHHHHHHHHHHh---C-CCcEEEEEeCCCcHhhHHHcCCCc--ccEEEEEECCe-Eeee-
Q 005125 624 HFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKR---F-PSVNFLKVEVEDHPYIAKSEGVSS--IPAFKIYKNGS-RVKE- 695 (713)
Q Consensus 624 ~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~---~-p~~~~~~v~~d~~~~~~~~~~v~~--~Pt~~~~~~g~-~~~~- 695 (713)
.......+..++|+.-.....+...+..+++. + +.+.|+.+|.+....+.+.+|+.. +|++.+..... ..-.
T Consensus 11 ~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~ 90 (111)
T cd03072 11 ELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPD 90 (111)
T ss_pred HHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCC
Confidence 33333333444444555567888999999998 8 679999999999988999999997 89988887532 1222
Q ss_pred ecCC-CHHHHHHHHHhhh
Q 005125 696 IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~~ 712 (713)
..+. +++.|.+|++++.
T Consensus 91 ~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 91 FEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred CccccCHHHHHHHHHHHh
Confidence 4456 8999999999874
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.23 Score=45.66 Aligned_cols=96 Identities=17% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPC--YH----RAH 330 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~ 330 (713)
.++..+|..|.+.|++++|++.|.++.+..... .+.+..+..+....++|.....+..++-.+-.. +. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 578999999999999999999999988865432 567888899999999999999999998776322 22 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
..-|..+...++|.+|...|-.+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 4557777888999999999988766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.069 Score=58.79 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=63.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
...+.+|.. |+.|..+...+.+++...|.+.+-.+|..++|+++..++|.++|++. .+|+.+ +.|. +.+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~--i~~~~~--~~g~~~~~~~~~ 193 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVF--LNGEEF--HNGRMDLAELLE 193 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEE--ECCcEE--EecCCCHHHHHH
Confidence 345666777 99999999999999999999999999999999999999999999875 477644 4566 7777776
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
.+..
T Consensus 194 ~l~~ 197 (515)
T TIGR03140 194 KLEE 197 (515)
T ss_pred HHhh
Confidence 6653
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.24 Score=42.99 Aligned_cols=84 Identities=21% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.+..........++++++..++...--+.|+.+..-..-|.++...|+|.+|+..++...+-.+..+.+--.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45556666667999999999999888899999999999999999999999999999999988888888888999999999
Q ss_pred CCHH
Q 005125 341 GEAE 344 (713)
Q Consensus 341 g~~~ 344 (713)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8865
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.026 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS 291 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 291 (713)
+++.+|.++...+++++|+.+|+++++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.22 Score=41.18 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=64.2
Q ss_pred hHHHHHhhcC-CceEEE-eec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 620 ERFRHFVTSP-GMAVVL-FCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 620 ~~~~~~l~~~-~~~vv~-f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
....+.+... ...+++ |.. -+.|.++..++.++++...+ .+++-||+++.+.+...+++...|+++||-+++-+.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMK 91 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEE
Confidence 3444444333 333333 555 47899999999999987644 788999999999999999999999999887654322
Q ss_pred ---------eecCC--CHHHHHHHHH
Q 005125 695 ---------EIPGH--QCELLEKSVK 709 (713)
Q Consensus 695 ---------~~~g~--~~~~~~~~~~ 709 (713)
.+.++ +.+++.+.|+
T Consensus 92 iD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 92 IDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred EeeCCCCCceEEEEeccHHHHHHHHH
Confidence 34444 6666666664
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=47.64 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=55.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEE------EEEeCCC-----------------------------cHh
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNF------LKVEVED-----------------------------HPY 671 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~------~~v~~d~-----------------------------~~~ 671 (713)
....++.|++ |++|+.-.|++..+.++. +.+ .-||.|+ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 4456666998 999999999999997642 223 3444443 123
Q ss_pred hHHHcCCCcccEE--EEEECCeEeeeecCC-CHHHHHHHHH
Q 005125 672 IAKSEGVSSIPAF--KIYKNGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 672 ~~~~~~v~~~Pt~--~~~~~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
++..++|..+|+. ++=++|+.+....|. +.+++++.+.
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 4557788889755 333569999999999 8887776443
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.46 Score=43.64 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
...+..+|..|.+.|++++|+++|.++........ ...+.+..+-.+....+++.....+..++-..-... .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~ 107 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-G 107 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-c
Confidence 36788899999999999999999999877654322 346678888999999999999999999987653331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
-|....++.. ..|..++..++|.+|...|-.++.-.
T Consensus 108 d~~~~nrlk~-----~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 108 DWERRNRLKV-----YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1222112111 35777778899999999998877544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=39.63 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=21.5
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 514 YAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 514 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 33444444455555555555555555555555555555555444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.94 Score=40.28 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=75.4
Q ss_pred hcHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 382 KRWNDLLKETQNVISFGADSAP-QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~~p~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
+.-++|+..|...-+.+-...| .+....+.+....|+-..|+..|..+-...+-... ..-.+...-+.++...
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~------~rd~ARlraa~lLvD~ 145 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI------GRDLARLRAAYLLVDN 145 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch------hhHHHHHHHHHHHhcc
Confidence 3445555555555444433332 44555677777778888888888776543331100 1112334446667777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS 538 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 538 (713)
|-|++-....+..- .+.++.-.. +.-.||...++.|++.+|...|..... +...+....+++.+.+
T Consensus 146 gsy~dV~srvepLa--~d~n~mR~s---------ArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 146 GSYDDVSSRVEPLA--GDGNPMRHS---------AREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ccHHHHHHHhhhcc--CCCChhHHH---------HHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 77776555443321 112221111 111477777888888888888877665 4444555555555544
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.049 Score=42.84 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHhhcCCceEEEeec--CchhHHHHHHH---HHHHHh-CCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 623 RHFVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKR-FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 623 ~~~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~-~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
........+.++.|++ |+.|+.+...+ +.+.+. ..+.+++.||.+.........+ ..+|+++|+.
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 3344567788888888 99999998876 334331 2468999999987654333222 5699998863
|
... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.22 E-value=3.2 Score=40.14 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINS--------SKATYRSNKSAALIGLGRQIEALVECKEAIRI-----DPCYHRA 329 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 329 (713)
..+|+-....+++++|+..|.+.+.... ....+...++.+|...|++..--+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 6778888899999999999999987621 12457788999999999886554444333222 2222333
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc----CC-CChH
Q 005125 330 HHRLAMLYF-RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF----GA-DSAP 403 (713)
Q Consensus 330 ~~~la~~~~-~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p-~~~~ 403 (713)
...|-.-+- ....++.-+..+...++ ..............-..+...+...|.|.+|+......+.. +. -+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 333332222 23456666777776666 22222222222333455667788899999999887766532 11 1112
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhcccc-----CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPK-----FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
.++..-..+|....+..++...+..|-. .+|.. ..+.+-..-|..+....+|.-|..+|-++++-
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq--------lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ--------LQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH--------HHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 5666667788888777777766655422 12211 12223334467777888999999999998873
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=47.69 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=66.7
Q ss_pred hhcHHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhc---ccCcHHHHH
Q 005125 381 LKRWNDLLKETQNVISF------GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG---LAGGAYLLI 451 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~ 451 (713)
...+++|+..|.-|+-. .+...+.++..+|.+|...|+.+....++++|+.........-.. ......+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34566676666655432 222234778888999999999766666655555443322211100 113467899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
.+|.++.+.|++++|+.+|.+++.......
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999998654443
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.045 Score=46.27 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKV 664 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v 664 (713)
...+++.|++ |++|+...|.++++.+.+ .++.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 3567777888 999999999999988776 34555555
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=48.37 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC--------C---cHhhHHHcCC----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE--------D---HPYIAKSEGV---------------- 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d--------~---~~~~~~~~~v---------------- 678 (713)
..+++.||+ |++|..-.|.+.++.+++. ++.++-|+++ . ...++..+++
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~ 119 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTH 119 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccC
Confidence 456666888 9999999999999998884 4788888753 1 2223333332
Q ss_pred --------------------Cccc----EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 679 --------------------SSIP----AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 679 --------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
..+| +|++=++|..+.+..|. +++.|++.|+..
T Consensus 120 ~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~l 177 (199)
T PTZ00056 120 ELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAEL 177 (199)
T ss_pred HHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 1122 44444689999999998 888888888765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=8.1 Score=43.56 Aligned_cols=257 Identities=13% Similarity=0.012 Sum_probs=125.7
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 350 (713)
+.+++.+-+.++. ..|.+....+..+.+....|+.++|....+++.......+.....+-..+...|...... +.
T Consensus 111 ~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w 185 (644)
T PRK11619 111 RREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YL 185 (644)
T ss_pred HccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HH
Confidence 4566666665332 237777777888888888888888877777776655444555544444444444433322 22
Q ss_pred HHHhhhhccccHHHHHHHHHHHHH-----HHHHHHh-hcHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHccCHHHHH
Q 005125 351 KKSSSLANQKDIAKAEALHKHLTK-----CNEAREL-KRWNDLLKETQNVISFG-ADSAPQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 351 ~~al~~~~p~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~ 423 (713)
.++...+...+......+...+.. +...... .+...+ ...+... +.....-...++.......+.+.|.
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTV----ETFARTTGPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHH----HHHhhccCCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 222111222222111111111100 0000000 000101 1111111 1211122223344444556677788
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
..+.+......-... ....+...+|.-....+...+|...+..+..... +...+. ....+.
T Consensus 262 ~~~~~~~~~~~~~~~------~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e------------~r~r~A 322 (644)
T PRK11619 262 LMIPSLVRAQKLNED------QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLE------------RRVRMA 322 (644)
T ss_pred HHHHHHHHhcCCCHH------HHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHH------------HHHHHH
Confidence 777754221110000 1222344445444444335677777776543322 222222 123344
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
...++++.+...+...-..........+.+|..+..+|+.++|...|+++..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4777887777777664433345567788888888888888888888888643
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.7 Score=41.44 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh-------------h--cccCcHH
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL-------------F--GLAGGAY 448 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~--~~~~~~~ 448 (713)
..+-++....+++++|+.. .+|..++.- ..--..+|...+++|++......... . ......+
T Consensus 200 p~~RI~~A~~ALeIN~eCA-~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECA-TAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred cHHHHHHHHHHHhcCchhh-hHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 3444566667788887765 455554432 22335566777776665322211100 0 0001234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
+...++.|..++|+..+|++.++...+..|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 445667777777777777777776665555
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.04 Score=50.94 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=28.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
..++.+.|.+.|.+++++.|+....|+++|....+.|+++.|...|++.++ ++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~-ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE-LDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc-CCccc
Confidence 344444455555555555555555555555555555555555555555555 44444
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.19 Score=58.30 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 005125 257 LDPEELKFMGNEAYNKARFEDALA------LYDRA-IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------- 322 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 322 (713)
..+......|......|.+.+|.+ ++... -.+.|.....+..++.++..++++++|+....++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 455667788888888899998888 44432 2347788889999999999999999999998887654
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 323 -DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 323 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.|+....+.+++...+..+....|+..+.++.. +.- +...|+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~-l~~-----------------------------------Ls~ge~h 1053 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK-LKL-----------------------------------LSSGEDH 1053 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH-hhc-----------------------------------cccCCCC
Confidence 345567888888888888888888888887766 111 0111111
Q ss_pred h--HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 402 A--PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 402 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
+ .....+++.++...++++.|+.+++.|++........ .....+..+..++..+..++++..|+...+...
T Consensus 1054 P~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~--~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP--KELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc--cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 1 2555677888888899999999999998744332110 001234455556666666666666665555444
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=44.61 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCceEEEeec---CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc---------------------HhhHHHcCCC---
Q 005125 629 PGMAVVLFCS---KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH---------------------PYIAKSEGVS--- 679 (713)
Q Consensus 629 ~~~~vv~f~~---cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~---------------------~~~~~~~~v~--- 679 (713)
.+..++.||+ |++|..-.|.+.++.+.+ .++.++.|..+.. ..+...+++.
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 107 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIME 107 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEEC
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcccc
Confidence 3445666776 999999999999998774 4477766665543 2466677888
Q ss_pred ------cccEEEEE-ECCeEeeeecCC
Q 005125 680 ------SIPAFKIY-KNGSRVKEIPGH 699 (713)
Q Consensus 680 ------~~Pt~~~~-~~g~~~~~~~g~ 699 (713)
.+|+++++ ++|+.+....|.
T Consensus 108 ~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 108 DPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred ccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99976555 579999988888
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.71 E-value=5 Score=39.89 Aligned_cols=172 Identities=18% Similarity=0.112 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID------P 478 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p 478 (713)
+-..+..+|...++|.+|+......+..-....++. .-.+++..-..+|+...+..+|...+..|-... |
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~----lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP 205 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI----LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP 205 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc----ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH
Confidence 445578889999999999988877654322211111 124456666888999999999988887765432 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---CCHH---HHHHHHHHHHHcCCHHHHHH--HH
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA---YNSV---LLCNRAACRSKLGQYEKAVE--DC 550 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~--~~ 550 (713)
.-..... ..-|.++....+|.-|..+|-+|++-.. ++.. .+-.+-.|-..++..++--. .-
T Consensus 206 qlQa~lD-----------LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 206 QLQATLD-----------LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred HHHHHHH-----------HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 1111111 1467777778999999999999987532 1222 33344455556666665443 34
Q ss_pred HHHHHhCCCChHHHH--------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 551 TAALIVMPSYSKARL--------------EAAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 551 ~~al~~~p~~~~a~~--------------~~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
+.+++....+.++.. +.|+..|..-+..||=-..-...|+.
T Consensus 275 K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 275 KLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYD 329 (411)
T ss_pred HHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHH
Confidence 456665555555544 55555555555555433333333333
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.4 Score=45.14 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHccCHHHHHHHhhcc-----ccCChhhHHhhhc
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAP-QVYALQAEALLRLQRHQEAHDSYNKS-----PKFCLEYYTKLFG 442 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~ 442 (713)
.+.+.....+.+.|-|..|.+..+-.+.++|...| .+.+.+-...++..+|+=-++.++.. +...|+.
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~------ 416 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF------ 416 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc------
Confidence 34444455566789999999999999999998434 33333333344555555555554443 2223322
Q ss_pred ccCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 005125 443 LAGGAYLLIVRAQVYIAAGR---FEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 443 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 479 (713)
..-..+|..|..... -+.|...+.+|+.+.|.
T Consensus 417 -----~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 417 -----GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -----hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 122345566665554 57788999999998885
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1 Score=47.02 Aligned_cols=90 Identities=16% Similarity=0.005 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQ- 542 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 542 (713)
..-...|+.|+...+.+...|. +......+.+.+.+--..|.+++..+|+++++|..-|.-.+..+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~------------~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWL------------SYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHH------------HHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence 3446778889988898888887 334444445558999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHH
Q 005125 543 YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 543 ~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+.|...+.++|+.+|+.+..|.
T Consensus 156 i~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 156 IESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hHHHHHHHHHHhhcCCCChHHHH
Confidence 99999999999999999998887
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=5.2 Score=39.78 Aligned_cols=284 Identities=12% Similarity=0.026 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC--CC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI--NSSK--------ATYRSNKSAALIGLGRQIEALVECKEAIRI---DP--CY 326 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~ 326 (713)
....+.......++++++..|.+.+.. .|.+ ......++..|...|+..+-.......-.. -+ ..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 355666667777889999999998874 2221 346788999999999988766655544322 11 11
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc----CC-C
Q 005125 327 HRAHHRLAMLYFR-LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF----GA-D 400 (713)
Q Consensus 327 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p-~ 400 (713)
......+-..+.. -+..+.-+..+..+++ ..............-..+...|...++|.+|+......+.. +. .
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIe-WA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIE-WAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 2222223222222 2344555666666666 22111111111222345567788899999999887766542 21 1
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh-hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 005125 401 SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE-YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP- 478 (713)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 478 (713)
...+++..-..+|..+.+..+|...+..|-..... ++. +...+.+-..-|..+....+|.-|..+|-+|++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp----PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP----PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC----HHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 12255566677888888888888877765221100 000 001233334457777778999999999999987322
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 005125 479 --NNKEVIKGVKMAKAMASARLRGNLLFKASKYK--EACYAYSEGLEHEAYNSVLLCNRAACRS--KLGQYEKAVEDCTA 552 (713)
Q Consensus 479 --~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~ 552 (713)
++..+.. ++..+-.+-...+..+ .++-.-+.+++....+.++....|.++. .+.+|+.|+..|+.
T Consensus 242 ~~~~v~A~~---------sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 242 LDDDVKALT---------SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred cCCcHHHHH---------HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 2223332 2222333333444444 3444455677777778888888888875 35678999999988
Q ss_pred HHHhCCC
Q 005125 553 ALIVMPS 559 (713)
Q Consensus 553 al~~~p~ 559 (713)
-+..||-
T Consensus 313 eL~~D~i 319 (411)
T KOG1463|consen 313 ELAEDPI 319 (411)
T ss_pred HHhcChH
Confidence 8877763
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.14 Score=41.91 Aligned_cols=51 Identities=24% Similarity=0.504 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHh-------hHHHcCC-CcccEEEEEEC
Q 005125 639 KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPY-------IAKSEGV-SSIPAFKIYKN 689 (713)
Q Consensus 639 cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~-------~~~~~~v-~~~Pt~~~~~~ 689 (713)
|++|.++.|++.+..+..| ++.|+.|++.+-|. +....++ ..+||++=|.+
T Consensus 45 CPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 45 CPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 9999999999999888765 69999999887653 2333445 78999998874
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.29 Score=44.62 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=56.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC--------CcHhh----HHHcC----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE--------DHPYI----AKSEG---------------- 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d--------~~~~~----~~~~~---------------- 677 (713)
+.+++.|++ |+.|..-.|.|.++.++|. ++.++-|+.+ ....+ ...++
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~ 109 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNT 109 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCCC
Confidence 455666877 9999988888999988874 4788888653 22122 11111
Q ss_pred ------------------CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 ------------------VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 ------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|...|+..++ ++|+.+.++.|. +++.|++.|+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 110 APLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred CHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 2224655545 579999999999 889999988765
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.23 Score=38.66 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=44.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---HhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH---PYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELL 704 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 704 (713)
...|++|.. |+.|..+..+|+.. ++.+..+|++.. ..+....|..++|.+ |.+|+. +.|+ ++|
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i--~i~g~~---igG~--~~l 74 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQV--FIGGKL---IGGS--DEL 74 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeE--EECCEE---EcCH--HHH
Confidence 445667776 99999999998743 355566676654 345445688999976 468865 3444 555
Q ss_pred HHHH
Q 005125 705 EKSV 708 (713)
Q Consensus 705 ~~~~ 708 (713)
.++|
T Consensus 75 ~~~l 78 (79)
T TIGR02190 75 EAYL 78 (79)
T ss_pred HHHh
Confidence 5443
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.52 Score=43.75 Aligned_cols=91 Identities=25% Similarity=0.470 Sum_probs=66.1
Q ss_pred hHHHHHhhcCCc-eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCC--cccEEEEEE--CCe
Q 005125 620 ERFRHFVTSPGM-AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVS--SIPAFKIYK--NGS 691 (713)
Q Consensus 620 ~~~~~~l~~~~~-~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~--~~Pt~~~~~--~g~ 691 (713)
+.+..+...... .+++|.. ......+...+..++..+. .+.|+.+|.+..+.+...+|+. .+|+++++. .++
T Consensus 85 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 85 ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 355555555444 5555654 4566777888889998874 4899999999999999999998 899999998 343
Q ss_pred EeeeecCC-CHHHHHHHHHh
Q 005125 692 RVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~ 710 (713)
..-...|. +++.|.+||+.
T Consensus 165 ~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 165 YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEE--SSCGCHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHhcC
Confidence 22212556 99999999863
|
... |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.32 Score=46.79 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=58.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC--------CcH---hhH-HHcC----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE--------DHP---YIA-KSEG---------------- 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d--------~~~---~~~-~~~~---------------- 677 (713)
..+++.||+ |+.|....|.+.++.++|. ++.++-|+++ ..+ ..+ ..++
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~ 179 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPST 179 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchh
Confidence 456667888 9999999999999998883 4788887753 111 121 1111
Q ss_pred ------------------CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 678 ------------------VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 678 ------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|...|+..++ ++|+.+.++.|. ++++|++.|++..
T Consensus 180 ~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 180 APVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1123544444 579999999999 8999999998763
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.36 Score=44.27 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=59.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc-----------------------------HhhHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH-----------------------------PYIAKS 675 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~-----------------------------~~~~~~ 675 (713)
...+++.|+. |+.|....+.+.++.++++ ++.|+-|..|.. ..++..
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 3556666777 9999999999999998885 588888876531 134557
Q ss_pred cCCCcccEEEEEE-CCeEeeee------cC---C-CHHHHHHHHHhh
Q 005125 676 EGVSSIPAFKIYK-NGSRVKEI------PG---H-QCELLEKSVKLY 711 (713)
Q Consensus 676 ~~v~~~Pt~~~~~-~g~~~~~~------~g---~-~~~~~~~~~~~~ 711 (713)
++|..+|+++++. +|+.+... .+ . +.+.|.+.|+..
T Consensus 105 ~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 105 YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHH
Confidence 7888999888885 67766442 11 1 557788877654
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.19 Score=36.64 Aligned_cols=54 Identities=17% Similarity=0.372 Sum_probs=37.7
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH----HcCCCcccEEEEEECCeEe
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK----SEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~----~~~v~~~Pt~~~~~~g~~~ 693 (713)
|++|.. |+.|..+..+|++. ++.+-.+|++..+...+ ..|..++|++. .+|+-+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~--i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVF--IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE--ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEE--ECCEEC
Confidence 355666 99999999988433 36777788877654333 34899999765 477643
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=5.4 Score=43.05 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
+.+-|.-.++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|++++++|-+.+|.++-....+-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3445556666677777777777766655533 3355566667777777777777777777777766666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 005125 336 LYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~ 355 (713)
+....|.-++|+.+......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHhcchHHHHHHHHHHHh
Confidence 66666667777666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.6 Score=46.45 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+..|..+|...+..|+++-|..+|+++-. +..+..+|...|+.+.=.+..+.|..
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD------------------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788889999999999999999998753 23356677778886555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.6 Score=46.75 Aligned_cols=243 Identities=12% Similarity=0.037 Sum_probs=116.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------------DPCYHRAHHRL 333 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~l 333 (713)
.|...|.+++|...---.+- ..-|..+|.-....-+++-|.+.|.++-.+ ...-+. -..+
T Consensus 565 q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLl 638 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLL 638 (1081)
T ss_pred hhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 45556666666542111110 123455555555555666666666554322 111122 2467
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH---HHHHHHHHHHHHhhcHHHHHHHHHHHHH--cCCCChHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL---HKHLTKCNEARELKRWNDLLKETQNVIS--FGADSAPQVYAL 408 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~ 408 (713)
|.++...|++.+|...|.+.-. - + ....+ ...+..+..+...|.-++-....++--. .+-..+ ..
T Consensus 639 A~~~Ay~gKF~EAAklFk~~G~-e---n--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----ka 708 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKRSGH-E---N--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP----KA 708 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHHcCc-h---h--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----HH
Confidence 7888888888888888876433 1 1 00011 1122233333333333333222222110 111100 01
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL-----AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
-|..+...|+.++|+...-.- ++.+..+.. ..+-+.+...+..+.....+.-|.+.|.+.=
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~-----gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g--------- 774 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDH-----GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG--------- 774 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcc-----cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc---------
Confidence 266677778887777654321 111100000 0011223333333334444444444443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
....+-.+....++|++|....++--+.- +.+|+-.|..+....+++||.+.|-+|=
T Consensus 775 -----------D~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 775 -----------DLKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred -----------cHHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 11235566777888998887766543333 3567777777777788888877776653
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.52 Score=54.91 Aligned_cols=175 Identities=14% Similarity=0.031 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhcHHHHHH------HHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 371 HLTKCNEARELKRWNDLLK------ETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 371 ~~~~~~~~~~~~~~~~A~~------~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
....+......+.|.++.+ .+......-.......|..++.++..++++++|+..-.++.-+...... ....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--~ds~ 1012 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--KDSP 1012 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc--CCCH
Confidence 4455556666677777766 4443333333334588999999999999999999999888654332111 1112
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-----DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 519 (713)
.....+.+++...+..+....|+..+.+++.+ .|+++..-.. ..+++.++...++++.|+.+.+.|
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~---------~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS---------FINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh---------hhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34557788888888899999999999888764 3434432221 126888888999999999999999
Q ss_pred hccCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 520 LEHEA--------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 520 l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
++... .....+..++.++..++++..|....+....+
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 97532 23566777888888888888888777766654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.73 Score=40.04 Aligned_cols=84 Identities=24% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.+..+...-...++.+++...+...--+.|+.++... .-|.++...|+|.+|+..|+...+-.+..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~------------~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDM------------FDGWLLIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccch------------hHHHHHHHcCCHHHHHHHHHhhhccCCCchH
Confidence 3444455555689999999999888889999998877 4899999999999999999999998888888
Q ss_pred HHHHHHHHHHHcCCHH
Q 005125 529 LLCNRAACRSKLGQYE 544 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~ 544 (713)
..-.++.|+..+||.+
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 8888999999999853
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.56 Score=48.83 Aligned_cols=85 Identities=14% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSSL 356 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 356 (713)
-+..|+.|+...+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR- 168 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR- 168 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh-
Confidence 34556666666666666666555555555556666666666666666666666666555555444 5666666666666
Q ss_pred hccccHH
Q 005125 357 ANQKDIA 363 (713)
Q Consensus 357 ~~p~~~~ 363 (713)
.+|+.+.
T Consensus 169 ~npdsp~ 175 (568)
T KOG2396|consen 169 FNPDSPK 175 (568)
T ss_pred cCCCChH
Confidence 6666553
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.2 Score=52.10 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=77.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA---SKYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
+..+....|+..|.+++...|.....+. +.+.++++. |+.-.|+.....|++++|....+|+.|+
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~------------nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLE------------NRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHH------------hHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3345678899999999999999887776 566666664 5667788888899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 535 ACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.++..++++.+|+.+...+....|.+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999888888854
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.44 Score=40.39 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=56.5
Q ss_pred HHHHHHHHHcc---cHHHHHHHHHHHhc-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 497 RLRGNLLFKAS---KYKEACYAYSEGLE-HEAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 497 ~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+++++++.... +..+.+.+++..++ -+|+ .-+..+.||..+.++++|+.|+.+++..++..|++..+.-
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 36788887654 56788999999996 4453 3678889999999999999999999999999999876654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.06 E-value=6.2 Score=38.25 Aligned_cols=209 Identities=15% Similarity=0.101 Sum_probs=119.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc--HHHHH
Q 005125 297 SNKSAALIGLGRQIEALVECKEAIRI----DP----CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD--IAKAE 366 (713)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~----~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~ 366 (713)
..+|.-....+++++|+..|.+.+.. +. ....+...++.+|...|++..--+.....-+ .-.+. +....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-~m~~ftk~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-AMEDFTKPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-HHHHhcchhHHH
Confidence 45677777889999999999999875 11 1245788999999999988764443333222 10000 00000
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA-----PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
.+..++... -.....++.-+......++...... ...-..+..++...|+|.+|+......+.......++
T Consensus 86 iirtLiekf--~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK-- 161 (421)
T COG5159 86 IIRTLIEKF--PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK-- 161 (421)
T ss_pred HHHHHHHhc--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc--
Confidence 000000000 0011233333333333332211110 1334456788999999999999887765432222111
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID-----PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
..-..++..-..+|....+..++...+..|-... |....+.. -..-|.......+|.-|..+|
T Consensus 162 --~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l----------DL~sGIlhcdd~dyktA~SYF 229 (421)
T COG5159 162 --INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL----------DLLSGILHCDDRDYKTASSYF 229 (421)
T ss_pred --cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH----------HHhccceeeccccchhHHHHH
Confidence 1234567777889999999888888777664432 22111111 013466677788999999999
Q ss_pred HHHhcc
Q 005125 517 SEGLEH 522 (713)
Q Consensus 517 ~~al~~ 522 (713)
-++++-
T Consensus 230 ~Ea~Eg 235 (421)
T COG5159 230 IEALEG 235 (421)
T ss_pred HHHHhc
Confidence 999875
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.13 Score=34.08 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356778888888888888888888888765
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.18 Score=39.57 Aligned_cols=56 Identities=16% Similarity=0.384 Sum_probs=40.5
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-H----hhHHHcCCCcccEEEEEECCeEe
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-P----YIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-~----~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
|++|+. |+.|..+.+++.++.. ...++.++.+.. . .+....|+.++|.+ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 456666 9999999999998765 356777777654 2 35555688899974 6777654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.4 Score=42.25 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=111.0
Q ss_pred HHHHHHHhhcHH-HHHHHHHHHHHcCCCChHHHHHHHHHHH-H-----------HccCHHHHHHHhhccccCChhhHHhh
Q 005125 374 KCNEARELKRWN-DLLKETQNVISFGADSAPQVYALQAEAL-L-----------RLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 374 ~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~la~~~-~-----------~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+.......+.++ ++++.-.+.+..+|+.. .+|+..-.++ . ...-+++-+.+...+++.+|+.+.
T Consensus 34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~-t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~-- 110 (421)
T KOG0529|consen 34 IIQKKREAKEYDEEHLELTSELLEKNPEFY-TVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG-- 110 (421)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhCchhh-hhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH--
Confidence 333334444443 56677777788888875 3443322222 2 222456667777888888887655
Q ss_pred hcccCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGR--FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
+|+.+..++.+.+. +..-++..+++++.+|.+-.+|.+-+. ..+.+-.......+=+++.++
T Consensus 111 --------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf--------V~~~~~~~~~~~~~El~ftt~ 174 (421)
T KOG0529|consen 111 --------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF--------VVEQAERSRNLEKEELEFTTK 174 (421)
T ss_pred --------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH--------HHHHHhcccccchhHHHHHHH
Confidence 67888888887654 678889999999999999888874111 122222222346677888899
Q ss_pred HhccCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCChHHHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSK------LGQ------YEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|.-++.+..+|.++..++.. .|+ ...-++.-..|+-.+|++..+|+
T Consensus 175 ~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 175 LINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred HHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 999899999999998877752 231 22334444555566666666655
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.46 Score=40.29 Aligned_cols=76 Identities=5% Similarity=0.034 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 258 DPEELKFMGNEAYNKA---RFEDALALYDRAIA-INSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..+..++++.++.+.. +..+.+.+++..++ ..|. .-+..+.+|..+.++++|+.++.+++..++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456777888777644 45678888888886 4453 35678888999999999999999999999999988777544
Q ss_pred H
Q 005125 333 L 333 (713)
Q Consensus 333 l 333 (713)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
|
|
| >cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.83 Score=36.72 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHH----HcCCCc-ccEEEEEE---CCeEeee
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAK----SEGVSS-IPAFKIYK---NGSRVKE 695 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~----~~~v~~-~Pt~~~~~---~g~~~~~ 695 (713)
.+..++.|.. -.+-.+|.+++.++++.+ |+..|++||+|++|.+.. .|+|+- -|.+-+.. .....-+
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 4667777877 578889999999999886 789999999999998765 345542 36554443 2223334
Q ss_pred ecCC----CHHHHHHHHHhh
Q 005125 696 IPGH----QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~----~~~~~~~~~~~~ 711 (713)
+.+. +.++|.+||+..
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 4333 789999999864
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.19 Score=44.04 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=42.7
Q ss_pred CceEEE-eec--CchhHHHHHHHHHHH----HhCCCcEEEEEeCCCc-------------------------HhhHHHcC
Q 005125 630 GMAVVL-FCS--KAEHKQVLQLMEQVC----KRFPSVNFLKVEVEDH-------------------------PYIAKSEG 677 (713)
Q Consensus 630 ~~~vv~-f~~--cg~c~~~~~~~~~l~----~~~p~~~~~~v~~d~~-------------------------~~~~~~~~ 677 (713)
+.+|.+ |.+ |++|++|.|.+.++- ...+.+.++.|+.|.. ..+...|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 455555 444 999999987766544 4444466666655532 24555788
Q ss_pred CCcccEEEEEE-CCeEee
Q 005125 678 VSSIPAFKIYK-NGSRVK 694 (713)
Q Consensus 678 v~~~Pt~~~~~-~g~~~~ 694 (713)
|.++|++.+.. +|+.|.
T Consensus 113 v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVT 130 (157)
T ss_pred cCcCceeEEecCCCCEeh
Confidence 99999886665 676664
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.2 Score=47.50 Aligned_cols=101 Identities=15% Similarity=0.024 Sum_probs=69.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HhccCCCCHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE-GLEHEAYNSVLLC 531 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~ 531 (713)
+...+...++...+...+..++..+|++..+.. ++|.+....|....++..+.. +....|.+.....
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQ------------NLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHH------------HHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 355556677777777777788888888777776 566666666666555555544 7777777766555
Q ss_pred HH------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 532 NR------AACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 532 ~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+ +.....+|+..++....+++.++.|.++....
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 44 77777777777777888888877777755443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.15 Score=33.65 Aligned_cols=30 Identities=37% Similarity=0.488 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 476 (713)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 347889999999999999999999999975
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=3 Score=44.84 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAI--------------NSSKATYRSNKSAALIGLGRQIEALVECKE 318 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 318 (713)
-|..+|......=+++-|.+.|.++-.+ ....+. -..+|.++...|++.+|.+.|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHH
Confidence 4778888888888888898888776322 111122 23578888888999999998875
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.2 Score=44.38 Aligned_cols=128 Identities=14% Similarity=0.009 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSN--KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 351 (713)
.-.-++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|++..++.+||.+....|....++..+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333667777777778887766433 46677778888888889999999999999999999998888887777776666
Q ss_pred H-HhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 005125 352 K-SSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA 402 (713)
Q Consensus 352 ~-al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 402 (713)
. +.. ..|.+.........++..+.....+++..++....+++....|...
T Consensus 126 ~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 126 EIAEW-LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHh-cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 5 666 8888877666666666777777888888888888888888888773
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.14 Score=48.32 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=31.4
Q ss_pred EeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 664 VEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 664 v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
.+++.+..++..+||.++|+++ |.+|.. ++|. +++.|.++|
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 3444556788888999999997 788876 6788 788888764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=11 Score=39.64 Aligned_cols=220 Identities=11% Similarity=0.005 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
-+-..+..+-..+..+..+.-...++.+.+... .+-.+++.++.||... ..++-...+++.++.+-++...-..|+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 333445555555556666666677777877764 4456788888888887 55777788888888888887777788887
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
|.. ++.+.+..+|.+++...-|... ...-.+.+++...+-+++....+..+-.+-..+
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q---------------------~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~l 199 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQ---------------------NAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKL 199 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhh---------------------hhhHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Confidence 776 8888888888888773333210 001112233333333333322222222222111
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL-LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM------ 489 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------ 489 (713)
|.- ...+ +-..-.-|....++++|++.+...++.+..+..+...+-.
T Consensus 200 g~~--------------------------~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 200 GEG--------------------------RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY 253 (711)
T ss_pred ccc--------------------------hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence 110 1111 1122234555678888888888888887777665542111
Q ss_pred --HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 490 --AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 490 --~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
...+..+....++-..-.++-+|+..|++.+..+..+
T Consensus 254 ~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 254 RGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred ccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 1113333344444444567889999999988877655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.65 Score=45.55 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL-EAAIQD 571 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~~A~~~ 571 (713)
+.++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-.+.-.+...-- .++...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 5667789999999999999999999999999999999999999999999999999999988775211110000 455556
Q ss_pred HHHHHHhCCCCH
Q 005125 572 YEMLIREIPGNE 583 (713)
Q Consensus 572 ~~~al~~~p~~~ 583 (713)
|.+++.-.|.+.
T Consensus 233 y~~~~~~~~~~~ 244 (280)
T COG3629 233 YEEILRQDPLDN 244 (280)
T ss_pred HHHHhccccccc
Confidence 666655554443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.42 E-value=10 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
.+.+.+-..|+..+.|+.|.....+..--...... .-+..++.+|.+..-+++|..|.++|-+|+...|++.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snn------e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNN------EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccH------HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 55666778888999999999988887532221111 2366788999999999999999999999999999843
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.5 Score=47.92 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=69.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 265 MGNEAYNKARFEDALALYDRAIAIN--------SS-----K-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 265 lg~~~~~~g~~~~A~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
-|...+++++|..|.--|..+|++. |. + ..+.-.+..||+.+++.+-|+....+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3445556666666666666666542 11 1 1244578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
..-+.+.|.|+..+.+|.+|...+.-+.
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987665543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.31 E-value=21 Score=41.94 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGL----G---RQIEALVECKEAIRIDPCYHRAHH 331 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~ 331 (713)
.....+++...+.|++|+..|++.-.-.|+.. ++.+..|..+... | .+++|+..|++. .-.|.-+--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHH
Confidence 44556778888999999999999999998764 5777777776653 3 467777777764 33556677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
..|.+|.++|++++-+++|.-|++ ..|+++.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALK-RYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHH-hcCCCCc
Confidence 889999999999999999999999 8888763
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.20 E-value=9.6 Score=37.73 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
+.+-....+..+..+-+.....|++++|..+.++..+|.-- .--..+|.+.++++++.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 33444455666667777777777777777777766665422 23355666666666653
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.1 Score=37.83 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=56.2
Q ss_pred cCCceEEEeec--C----chhHHHH--HHHHHHHHhCCCcEEEEEeCCCc--HhhHHHcCCCcccEEEEEE--C--CeEe
Q 005125 628 SPGMAVVLFCS--K----AEHKQVL--QLMEQVCKRFPSVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYK--N--GSRV 693 (713)
Q Consensus 628 ~~~~~vv~f~~--c----g~c~~~~--~~~~~l~~~~p~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~--~--g~~~ 693 (713)
..+..++.++. | ..|+... |.+-++.. ...+++.+|++.. ..++..+++.+.|++.++. + .+.+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 34455555655 3 4444332 22333332 3578888888754 5788899999999998884 2 4568
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
.++.|. ++++|...|...
T Consensus 94 ~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 999999 999999988765
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.65 Score=35.28 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=42.6
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh---hHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY---IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
+++|.. |+.|..+..+|.+. ++.+..+|++..+. +....|..++|.+ |.+|+.++ | .++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe---C--HHHHHHH
Confidence 556666 99999999988753 35566667665542 3333588899974 67887543 4 3666666
Q ss_pred H
Q 005125 708 V 708 (713)
Q Consensus 708 ~ 708 (713)
|
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 5
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.92 E-value=8.5 Score=41.20 Aligned_cols=159 Identities=13% Similarity=-0.001 Sum_probs=84.7
Q ss_pred cCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 005125 273 ARFEDALALYDRAIAI------------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------------------ 322 (713)
Q Consensus 273 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------ 322 (713)
.-|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....+++|=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455565555555443 3455667777777777777777766666665421
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-cHHHHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005125 323 ---DPCYH---RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK-DIAKAEA-LHKHLTKCNEARELKRWNDLLKETQNV 394 (713)
Q Consensus 323 ---~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 394 (713)
.|.+- -+++..-..+.+.|-+..|.++++-.+. ++|. ++..... +..+..++..|.-.-++-++.+...+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls-Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~- 409 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS-LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK- 409 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-
Confidence 12221 2233333444566778888888888888 8777 5432222 22222233333222222222222221
Q ss_pred HHcCCCChHHHHHHHHHHHHHccC---HHHHHHHhhccccCChh
Q 005125 395 ISFGADSAPQVYALQAEALLRLQR---HQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 395 l~~~p~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 435 (713)
+..-|+. ..-..+|..|..... -+.|...+.+|+...|.
T Consensus 410 l~~~PN~--~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 410 LSQLPNF--GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhcCCc--hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2333443 222334566665554 56788888888887773
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.83 E-value=6.2 Score=42.16 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.++|+.+.|.+..+ ..++...|..||.....+|+++-|.++|.++-.
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34555555544332 234677899999999999999999999888755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 713 | ||||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 1e-10 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 4e-08 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 1e-06 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 2e-06 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 4e-06 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 4e-06 | ||
| 1syr_A | 112 | Initial Structural Analysis Of Plasmodium Falciparu | 4e-06 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 8e-06 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-05 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 2e-05 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 2e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-05 | ||
| 2wz9_A | 153 | Crystal Structure Of The Thioredoxin Domain Of Huma | 3e-05 | ||
| 2diy_A | 130 | The Solution Structure Of The Thioredoxin Domain Of | 4e-05 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 4e-05 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 7e-05 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 9e-05 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 1e-04 | ||
| 3esk_A | 129 | Structure Of Hop Tpr2a Domain In Complex With The N | 3e-04 | ||
| 1elr_A | 131 | Crystal Structure Of The Tpr2a Domain Of Hop In Com | 4e-04 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 4e-04 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 8e-04 | ||
| 2oe0_A | 114 | Crystal Structure Of Mitochondrial Thioredoxin 3 Fr | 5e-04 | ||
| 2e0q_A | 104 | Crystal Structure Of K53e Thioredoxin From Sulfolob | 7e-04 | ||
| 3kd0_A | 105 | Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin | 8e-04 |
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153 | Back alignment and structure |
|
| >pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129 | Back alignment and structure |
|
| >pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114 | Back alignment and structure |
|
| >pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104 | Back alignment and structure |
|
| >pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 2e-86
Identities = 58/365 (15%), Positives = 131/365 (35%), Gaps = 35/365 (9%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
D E+ +G + + DAL+ + A+ + ++ + +G+ AL +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL--------ANQKDIAKAEALH 369
+ I + + A + L + G+ ++A +KK + + KA+ +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429
+ ++ +A + + + ++ A ++ L+AE ++ ++A +
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAA 180
Query: 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489
K + + +Y G E ++ ++ ++D ++K K
Sbjct: 181 SKLKSDN----------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230
Query: 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHE----AYNSVLLCNRAACRSKLGQYEK 545
K + L + +Y +A Y ++ E Y C SK + +
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290
Query: 546 AVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQ 593
A+ C+ L + P A + AIQDYE ++++ L +AQ
Sbjct: 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
Query: 594 VQLKK 598
LK+
Sbjct: 351 RLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 8e-31
Identities = 38/250 (15%), Positives = 102/250 (40%), Gaps = 26/250 (10%)
Query: 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
+ + + L+ +A++ A + A+ D+ + + A R ++ I G +A+
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174
Query: 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA-----KAEAL 368
+ K A ++ A ++++ LY++LG+ E ++S ++ L + + L
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234
Query: 369 HKHLTKCNEARELKRWNDLLKETQNVISF---GADSAPQVYALQAEALLRLQRHQEAHDS 425
+K + E R+ D + ++V+ A+ + + ++ EA
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294
Query: 426 YNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481
++ P RA+ Y+ +++A++ + A + + N++
Sbjct: 295 CSEVLQMEPDNVNALKD--------------RAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340
Query: 482 EVIKGVKMAK 491
++ +G++ A+
Sbjct: 341 QIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 244 SGEFPQCISSLNK---LDPEELKFMGNEAYNKA-------RFEDALALYDRAIAINSSKA 293
G + S +P ++ + +A+ + + +
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306
Query: 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345
+++ A + EA+ + + A + + L L +++K
Sbjct: 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 3e-81
Identities = 60/389 (15%), Positives = 137/389 (35%), Gaps = 40/389 (10%)
Query: 239 IVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
+ + Q ++ D E+ +G + + DAL+ + A+ +
Sbjct: 11 VDLGTENLYFQSMA-----DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL-- 356
++ + +G+ AL + + I++ + A + L + G+ ++A +KK
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 357 ------ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410
Q + K++ + + ++ A + + ++ A ++ L+A
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRA 184
Query: 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470
E ++ ++A + K + + +Y G E ++
Sbjct: 185 ECFIKEGEPRKAISDLKAASKLKNDN----------TEAFYKISTLYYQLGDHELSLSEV 234
Query: 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE----AYN 526
++ ++D ++K K K + L + +Y +A Y ++ E Y
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294
Query: 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEM 574
C SK + +A+ C+ L + P A + AIQDYE
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354
Query: 575 LIREIPGNEEVGRALFEAQVQLKKQRGED 603
++++ L +AQ LK+ + D
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRD 383
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-29
Identities = 51/309 (16%), Positives = 104/309 (33%), Gaps = 51/309 (16%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
A+ + A+A D+ + + A R ++ I G +A+ + K A ++
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
A ++++ LY++LG+ E ++S ++ L +D + A +K + K N+ E
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE---- 262
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444
AE L+R R+ +A Y ++ +
Sbjct: 263 ------------------------SAEELIRDGRYTDATSKYES----VMKTEPSIAEYT 294
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504
+ + + +A++ + Q++P+N A+ R
Sbjct: 295 VRSKER--ICHCFSKDEKPVEAIRVCSEVLQMEPDN---------VNALKD---RAEAYL 340
Query: 505 KASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS--- 561
Y EA Y EH + + + L Q +K +
Sbjct: 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400
Query: 562 KARLEAAIQ 570
KA + A+Q
Sbjct: 401 KAYRKLALQ 409
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 53/303 (17%)
Query: 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWN 385
+H HH + ++++ + KHL + +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVE------------------KHLELGKKLLAAGQLA 43
Query: 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLF 441
D L + + D+ Y +A L + + + A K F
Sbjct: 44 DALSQFHAAVDGDPDNY-IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--------- 93
Query: 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV---IKGVKMAKAMASARL 498
A L R + + G+ ++A + + +P+ E + + M R
Sbjct: 94 ---TAARLQ--RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
+ F + Y A + LE +++ L RA C K G+ KA+ D AA +
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 559 SYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEA-QVQLKKQRGEDVK 605
++A E ++ + ++ ++ + ++ + E++
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268
Query: 606 DMK 608
Sbjct: 269 RDG 271
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 245 GEFPQCISSLNK---LDPEELKFMGN--EAYNKA-RFEDALALYDRAIAINSSKATYRSN 298
+ + I ++ ++P+ + + + EAY +++A+ Y+ A N + R
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYH---RAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
A L + + ++ + +A+ +LA+ + + + +K +
Sbjct: 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW----HPDNFQNEEEKKKA 424
Query: 356 LANQKDIAKA 365
DIA A
Sbjct: 425 EKKFIDIAAA 434
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 6e-38
Identities = 60/363 (16%), Positives = 107/363 (29%), Gaps = 56/363 (15%)
Query: 245 GEFPQCISSLNKL------DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
G+F +L + L + + + R + + AI N A SN
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358
G+ EA+ + A+R+ P + + LA G+ E AV Y +L
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS--ALQY 130
Query: 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418
D+ N + L R + I + A ++
Sbjct: 131 NPDLYCV-----RSDLGNLLKALGRLEEAKACYLKAIETQPNFA-VAWSNLGCVFNAQGE 184
Query: 419 HQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
A + K+ P F Y V A F+ AV A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYIN--------------LGNVLKEARIFDRAVAAYLRAL 230
Query: 475 QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534
+ PN+ A + + ++ A Y +E + + CN A
Sbjct: 231 SLSPNH---------AVVHGN---LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 535 ACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGN 582
+ G +A + AL + P+++ + +E A++ Y + P
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 583 EEV 585
Sbjct: 339 AAA 341
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 61/338 (18%), Positives = 117/338 (34%), Gaps = 45/338 (13%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
+GN+ K+ G+ + I L P+ + + E A+ Y A+ N
Sbjct: 73 LGNVYKE-RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
RS+ L LGR EA +AI P + A L ++ GE A+ H
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409
++K+ + + A ++ N +E + ++ + +S + A V+
Sbjct: 192 FEKA--VTLDPNFLDA-----YINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VVHGNL 243
Query: 410 AEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED 465
A A D+Y ++ P F Y A G +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--------------LANALKEKGSVAE 289
Query: 466 AVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525
A A ++ P + + + N+ + +EA Y + LE
Sbjct: 290 AEDCYNTALRLCPTHADSLNN------------LANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563
+ N A+ + G+ ++A+ A+ + P+++ A
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 56/334 (16%), Positives = 102/334 (30%), Gaps = 60/334 (17%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+ + Y FE A + S+ R + AI+ +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
A+ L +Y G+ ++A+ HY+ + L + D ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDG-----YINLAAALVAAGDM 117
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKL 440
++ + + + D V + L L R +EA Y K+ P F + +
Sbjct: 118 EGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-- 174
Query: 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRG 500
V+ A G A+ + A +DPN A + G
Sbjct: 175 ------------LGCVFNAQGEIWLAIHHFEKAVTLDPNF---------LDAYIN---LG 210
Query: 501 NLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555
N+L +A + A AY L + N A + G + A++ A+
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHG-----NLACVYYEQGLIDLAIDTYRRAIE 265
Query: 556 VMPSYSKA------------RLEAAIQDYEMLIR 577
+ P + A + A Y +R
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-27
Identities = 58/313 (18%), Positives = 101/313 (32%), Gaps = 56/313 (17%)
Query: 245 GEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
G+ + + +P+ +GN R E+A A Y +AI + A SN
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358
G A+ ++A+ +DP + A+ L + ++AV+ Y ++ SL
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-- 232
Query: 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418
+ A H E + + + I Y A AL
Sbjct: 233 SPNHAVV-----HGNLACVYYEQGLIDLAIDTYRRAIELQPHFP-DAYCNLANALKEKGS 286
Query: 419 HQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
EA D YN + P A + G E+AV+ + A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNN--------------LANIKREQGNIEEAVRLYRKAL 332
Query: 475 QIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAYSEGLE-----HEAYNSV 528
++ P A+A ++L + K +EA Y E + +AY+
Sbjct: 333 EVFPEF-------------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS-- 377
Query: 529 LLCNRAACRSKLG 541
N ++
Sbjct: 378 ---NMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 47/319 (14%), Positives = 97/319 (30%), Gaps = 64/319 (20%)
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
+ G A C + R +P L+ ++F+ +++ ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIK 61
Query: 358 NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417
+A+A + N +E + + ++ ++ + D Y A AL+
Sbjct: 62 QNPLLAEA-----YSNLGNVYKERGQLQEAIEHYRHALRLKPDFI-DGYINLAAALVAAG 115
Query: 418 RHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA 473
+ A +Y + P + A GR E+A A
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSD--------------LGNLLKALGRLEEAKACYLKA 161
Query: 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-----HEAYNSV 528
+ PN A A ++ G + + A + + + + +AY
Sbjct: 162 IETQPNF---------AVAWSN---LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI-- 207
Query: 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLI 576
N + +++AV AL + P+++ ++ AI Y I
Sbjct: 208 ---NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 577 REIPGNEEV----GRALFE 591
P + AL E
Sbjct: 265 ELQPHFPDAYCNLANALKE 283
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALALYDRAIAIN 289
+ N +K+ G + N L P + L + N + E+A+ LY +A+ +
Sbjct: 277 LANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342
A SN ++ L G+ EAL+ KEAIRI P + A+ + + +
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-37
Identities = 55/366 (15%), Positives = 108/366 (29%), Gaps = 47/366 (12%)
Query: 245 GEFPQCISSLNK---LDPEE-------LKFMGNEAYNKARFEDALALYDRAIAINSSKAT 294
G + + L P + LK GN + F +A+ Y AI ++ ++
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354
+ SN SA I G + + +A+ I P + +A R A LG A+ S
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120
Query: 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414
+ + L ++L K + +K N+ L + + S S + +
Sbjct: 121 LNGDFDGASIEPMLERNLNK----QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
L+ S + L + A L+ + + + +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 475 QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE----HEAYNSVLL 530
+ N + G F + +A E + +Y
Sbjct: 237 PLRENAALALC------------YTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI---- 280
Query: 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIRE 578
A + ++ + A+ + P Y + A +D++
Sbjct: 281 -FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339
Query: 579 IPGNEE 584
P N
Sbjct: 340 NPENVY 345
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 44/395 (11%), Positives = 114/395 (28%), Gaps = 82/395 (20%)
Query: 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKL------DPEE 261
L LQ + + + ++ + + + +S+
Sbjct: 191 TAYALLSDALQRLYSATDEGYLVAND-----LLTKSTDMYHSLLSANTVDDPLRENAALA 245
Query: 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR 321
L + G + K DA L +I ++ + +Y + L E ++A+
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFKFFQKAVD 304
Query: 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL 381
++P Y ++ +YF L + + A ++K+ SL + ++ +
Sbjct: 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYP-----YIQLACLLYKQ 357
Query: 382 KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYY 437
++ + +V AE L A Y+ + +
Sbjct: 358 GKFTESEAFFNETKLKFPTLP-EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416
Query: 438 TK--LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495
L G A + + +F A+K A ++DP +
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS--------------- 461
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555
+A A + ++ + ++A+E + I
Sbjct: 462 --------------------------EQAKI-----GLAQLKLQMEKIDEAIELFEDSAI 490
Query: 556 VMPSYSKA----------RLEAAIQDYEMLIREIP 580
+ + + +++ ++ ++ ++
Sbjct: 491 LARTMDEKLQATTFAEAAKIQKRLRADPIISAKME 525
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 47/398 (11%), Positives = 105/398 (26%), Gaps = 62/398 (15%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
GN + F + I LDP E F + + E + +A+ I
Sbjct: 31 RGNHFFT-AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK---- 345
+ +++A LG +A+ + ++ + A + +A K
Sbjct: 90 PDHSKALLRRASANESLGNFTDAM-FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNE 148
Query: 346 --AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP 403
+ + S L + +A + + + ++ + + +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 404 QVYALQAEALLR-LQRHQEAHDSYNKSPKF-----------------------CLEYYTK 439
+ Y + + L + + + +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268
Query: 440 LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499
L I A ++ K Q A ++P R
Sbjct: 269 SINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYH------------R 316
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
G + F YK A + + N A K G++ ++ + P+
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Query: 560 YSKA------------RLEAAIQDYEMLIREIPGNEEV 585
+ + AI+ Y++ R E++
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 37/324 (11%), Positives = 78/324 (24%), Gaps = 47/324 (14%)
Query: 267 NEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALI--GLGRQIEALVECKEAIRIDP 324
+ + ++ A AL A+ S + L+ L +
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
A + +F A ++S +L + + +
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-----TPNSYIF---LALTLADKENS 292
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKL 440
+ K Q + + Y + + LQ ++ A + + K+ P+ Y
Sbjct: 293 QEFFKFFQKAVDLNPEYP-PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ-- 349
Query: 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRG 500
A + G+F ++ + P EV
Sbjct: 350 ------------LACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFA 385
Query: 501 NLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560
+L + A Y E + K +
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ------L 439
Query: 561 SKARLEAAIQDYEMLIREIPGNEE 584
+ + AAI+ P +E+
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQ 463
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 9e-37
Identities = 56/349 (16%), Positives = 116/349 (33%), Gaps = 40/349 (11%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
LK GN+ + +++DA+ Y+ A+ + + SN SA + +G + + +A
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ + P Y + R A LG+ A+ S + D + L ++L K ++
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125
Query: 380 ELKRWNDLLKETQNVISFGADSAPQVYALQ--------AEALLRLQRHQEAHDSYNKSPK 431
+++ D+ T A + Q + + + + +Y++S +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE 185
Query: 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491
E L L + A F A + ++ +D NN++ K+A
Sbjct: 186 ADKELMNGLSNLYKRS-----PESYDKADESFTKAARLFEEQ--LDKNNEDEKLKEKLAI 238
Query: 492 AMASARLRGNLLFKASKYKEACYAYSEGLE----HEAYNSVLLCNRAACRSKLGQYEKAV 547
+ G F + A + +E +Y A + +
Sbjct: 239 S---LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-----YMALIMADRNDSTEYY 290
Query: 548 EDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEE 584
AL + + S + A +D++ P N
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 37/341 (10%), Positives = 91/341 (26%), Gaps = 74/341 (21%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
L + L+ G + K A +AI + +Y + + E
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-IYMALIMADRNDSTEY 289
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
+A+++D ++ + F L ++A + K+ L + ++
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFP-----YI 342
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS--- 429
A +++D ++ +V AE L +A Y+ +
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAP-EVPNFFAEILTDKNDFDKALKQYDLAIEL 401
Query: 430 -PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
K Y F +A + A+++DP +
Sbjct: 402 ENKLDGIYVGI-----APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-------- 448
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548
+A A + + ++A+
Sbjct: 449 ---------------------------------EQAKI-----GLAQMKLQQEDIDEAIT 470
Query: 549 DCTAALIVMPSYSKA----------RLEAAIQDYEMLIREI 579
+ + + + +++ I+ +L ++I
Sbjct: 471 LFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLAKKI 511
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 59/441 (13%), Positives = 119/441 (26%), Gaps = 86/441 (19%)
Query: 211 DYLYKNLQDVPKQRYGESRLGRNGVMGNI--VKQPSGEFPQCISSLNKLDPEELKFM--- 265
D +L E L RN + +K+ G+ ++ +L + K
Sbjct: 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154
Query: 266 ---------GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG----------- 305
+ + E A YD + + SN
Sbjct: 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214
Query: 306 -LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364
E L + E ++ + + F + A KK+ L +
Sbjct: 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-----R 269
Query: 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424
+ + + + ++++ VY + + LQ + +A
Sbjct: 270 VNSYIY---MALIMADRNDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGK 325
Query: 425 SYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480
++K+ P+ Y A + +F+D +A + P
Sbjct: 326 DFDKAKELDPENIFPYIQ--------------LACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK- 539
EV +L + + +A Y +E E + A K
Sbjct: 372 PEV------------PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419
Query: 540 --------LGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREI 579
+ + +A A + P +A ++ AI +E
Sbjct: 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479
Query: 580 PGNEEVGRALFEAQVQLKKQR 600
EE +A+ A+ +QR
Sbjct: 480 RTMEEKLQAITFAEAAKVQQR 500
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-24
Identities = 39/325 (12%), Positives = 90/325 (27%), Gaps = 80/325 (24%)
Query: 239 IVKQPSGEFPQCISSLNK---LDP--EELKFMGNEAYNKARFEDALALYDRAIAINSSKA 293
I K + + K L P +M ++ + +D+A+ ++S+ +
Sbjct: 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304
Query: 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
+ ++ L +A + +A +DP + +LA L +R + + + + +
Sbjct: 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE- 363
Query: 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413
A+ AP+V AE L
Sbjct: 364 ------------------------AKRKF-----------------PEAPEVPNFFAEIL 382
Query: 414 LRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKT 469
+A Y+ + K Y F +A
Sbjct: 383 TDKNDFDKALKQYDLAIELENKLDGIYVGI-----APLVGKATLLTRNPTVENFIEATNL 437
Query: 470 AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH-----EA 524
+ A+++DP +++ G + + EA + E + E
Sbjct: 438 LEKASKLDPRSEQAKIG------------LAQMKLQQEDIDEAITLFEESADLARTMEEK 485
Query: 525 YNSVLLCNRAACRSKLGQYEKAVED 549
++ + ++ +
Sbjct: 486 LQAITFAE-------AAKVQQRIRS 503
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-18
Identities = 50/411 (12%), Positives = 107/411 (26%), Gaps = 90/411 (21%)
Query: 245 GEFPQCISSLNKL------DPEELKFMGNEAYNK---ARFEDALALYDRAIAINSSKATY 295
G+F + L+ L + ++ M NK ++ ++ D A A + +T
Sbjct: 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146
Query: 296 RS-------------NKSAALIGLGRQIEALVECKEAIRIDPCYHRA-----HHRLAMLY 337
+ A+ G+ + E+ D
Sbjct: 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206
Query: 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397
KA +++ N+ + K + ++ + I
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266
Query: 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVR 453
Y A + E ++ ++K+ YY R
Sbjct: 267 --FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH--------------R 310
Query: 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEAC 513
Q+ ++ A K A ++DP N L ++ +K+ +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPEN---------IFPYIQ---LACLAYRENKFDDCE 358
Query: 514 YAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA----- 563
+SE E N A + ++KA++ A+ +
Sbjct: 359 TLFSEAKRKFPEAPEVPN-----FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413
Query: 564 ----------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598
A E + P +E+ L + ++Q +
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 32/313 (10%), Positives = 83/313 (26%), Gaps = 48/313 (15%)
Query: 326 YHRAHHRLAMLYFRLGEAEKAVSHYKK--------------SSSLANQKDIAKAEALHKH 371
Y A +FR + + A+ +Y S+ + D+ K +
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 372 LTKCN----EA--------RELKRWND---LLKETQNVISFGADSAPQVYALQAEALLRL 416
+ + L ++ D L F D++ + + +
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAM 123
Query: 417 QRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA 473
+ +E + + E K + + + E ++
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183
Query: 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533
+ D + + + + + A ++E +E + + ++ L +
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243
Query: 534 AACRSKLGQYEKAVEDCTAALIVMPSYS-----------KARLEAAIQDYEMLIREIPGN 582
+ A ED A+ + P + + ++ ++ N
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN 303
Query: 583 EEV----GRALFE 591
V G+ F
Sbjct: 304 SSVYYHRGQMNFI 316
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 8e-34
Identities = 45/292 (15%), Positives = 92/292 (31%), Gaps = 46/292 (15%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
++ K GN+ Y +F++A+ Y++A ++ +N++AA G A+ +A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGEYETAISTLNDA 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA---KAEALHKHLTKCN 376
+ + ++ + R+G A + KK+ QK + A+ L
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY-YQKSLTEHRTADIL-------- 115
Query: 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKF 432
+L+ LK+ + + A + L+ + A +Y + P+
Sbjct: 116 --TKLRNAEKELKKAEAEAYVNPEKA-EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
Y RA F +A+ A + DPN +A
Sbjct: 173 ARGYSN--------------RAAALAKLMSFPEAIADCNKAIEKDPNF---------VRA 209
Query: 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544
+ +Y A +A + R + +
Sbjct: 210 YIR---KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 245 GEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
+ + ++P EE + G E + K+ + +A+ Y I A SN
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
++AAL L EA+ +C +AI DP + RA+ R A + E A+ + +
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 7e-19
Identities = 40/257 (15%), Positives = 65/257 (25%), Gaps = 67/257 (26%)
Query: 245 GEFPQCISSLNK---LDPEE---LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
GE+ IS+LN E K + L + I T
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HR 110
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358
+ L L + L + + ++P YF + AV Y +
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-A 169
Query: 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418
+D + Y+ +A AL +L
Sbjct: 170 PED-----------------------------------------ARGYSNRAAALAKLMS 188
Query: 419 HQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
EA NK+ P F Y +A IA + A++T A
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIR--------------KATAQIAVKEYASALETLDAAR 234
Query: 475 QIDPNNKEVIKGVKMAK 491
D ++ +
Sbjct: 235 TKDAEVNNGSSAREIDQ 251
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
G ++P + + + PE+ + F +A+A ++AI +
Sbjct: 145 EGK-EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE 344
+ K+ A I + AL A D + + ++
Sbjct: 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 39/368 (10%), Positives = 85/368 (23%), Gaps = 48/368 (13%)
Query: 239 IVKQPSGEFPQCISSLNK---LDPEE---LKFMGNEAYNKARFEDALALYDRAIAINSSK 292
KQ + L + L PE+ + G + L + +A + +
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207
Query: 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
++ L L +A + P A L ++ + +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267
Query: 353 SSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412
+ L Q+ A+ + L+ LL A
Sbjct: 268 AHGLTPQQ----VVAIAS---NSGGKQALETVQRLLPVLCQAHGLTPQQV-VAIASNGGG 319
Query: 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQD 472
L+ Q ++ + + A + +
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQ----------VVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 473 AAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532
A + P A+AS G + + V + +
Sbjct: 370 AHGLTPEQ---------VVAIAS---NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417
Query: 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIP 580
+ L ++ + A + P A + A + + + +
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477
Query: 581 GNEEVGRA 588
+ V A
Sbjct: 478 NDHLVALA 485
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-31
Identities = 28/347 (8%), Positives = 67/347 (19%), Gaps = 50/347 (14%)
Query: 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
L + + L + +A + + ++ L L
Sbjct: 67 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 126
Query: 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLT 373
+A + P A L + + + A+ + A+
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ----AHGLTPEQVVAIAS--- 179
Query: 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK----S 429
+ L+ LL A L+ Q + +
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQV-VAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Query: 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489
P+ + + A + + A + P I
Sbjct: 239 PQQVVAIAS--------------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS--- 281
Query: 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549
+ + V + + + L ++ +
Sbjct: 282 ---------NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 550 CTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEE 584
A + P A ++ + P
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 9e-31
Identities = 30/333 (9%), Positives = 72/333 (21%), Gaps = 42/333 (12%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
L + + L + +A + + ++ L
Sbjct: 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQAL 159
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
L +A + P A L ++ + ++ L Q + A+ +
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNG 215
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ L+ LL A L+ Q ++
Sbjct: 216 ---GGKQALETVQRLLPVLCQAHGLTPQQV-VAIASNGGGKQALETVQRLLPVLCQAHGL 271
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
+ + + A + + A + P A
Sbjct: 272 TPQQVVAIAS----------NSGGKQALETVQRLLPVLCQAHGLTPQQ---------VVA 312
Query: 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552
+AS G + + V + + + L ++ +
Sbjct: 313 IAS---NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 553 ALIVMPSYSKA------------RLEAAIQDYE 573
A + P A ++ +
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 33/353 (9%), Positives = 79/353 (22%), Gaps = 48/353 (13%)
Query: 239 IVKQPSGEFPQCISSLNK---LDPEE---LKFMGNEAYNKARFEDALALYDRAIAINSSK 292
KQ + + L + L PE+ + + L + +A + +
Sbjct: 114 GGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173
Query: 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
++ L L +A + P A L ++ + +
Sbjct: 174 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233
Query: 353 SSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412
+ L + A+ + + L+ LL A +
Sbjct: 234 AHGL----TPQQVVAIASNG---GGKQALETVQRLLPVLCQAHGLTPQQV-VAIASNSGG 285
Query: 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQD 472
L+ Q ++ + + A + +
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIAS----------NGGGKQALETVQRLLPVLCQ 335
Query: 473 AAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532
A + P A+AS + + V + +
Sbjct: 336 AHGLTPQQ---------VVAIAS---HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383
Query: 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
+ L ++ + A + P A ++ +
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 31/344 (9%), Positives = 73/344 (21%), Gaps = 42/344 (12%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
L+ ++ G +A AL + + + ++ L
Sbjct: 32 QLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRL 91
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
L +A + P A L ++ + + A+ + A+ H
Sbjct: 92 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ----AHGLTPEQVVAIASHD 147
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ L+ LL + A L+ Q ++
Sbjct: 148 ---GGKQALETVQALLPVLCQAHGLTPEQV-VAIASNGGGKQALETVQRLLPVLCQAHGL 203
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
+ + A + + A + P I
Sbjct: 204 TPQQ----------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS------ 247
Query: 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552
G + + V + + + + L ++ +
Sbjct: 248 ------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 553 ALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEE 584
A + P A ++ + P
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-22
Identities = 31/341 (9%), Positives = 73/341 (21%), Gaps = 43/341 (12%)
Query: 257 LDPEELKFMGNEAYN-KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
L+ + A +A A L + +++ + + +
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375
+ + P A L ++ + + A+ + A+ H
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASHD--- 113
Query: 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435
+ L+ LL + A L+ Q ++ E
Sbjct: 114 GGKQALETVQRLLPVLCQAHGLTPEQV-VAIASHDGGKQALETVQALLPVLCQAHGLTPE 172
Query: 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495
+ A + + A + P A+AS
Sbjct: 173 QVVAIAS----------NGGGKQALETVQRLLPVLCQAHGLTPQQ---------VVAIAS 213
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555
G + + V + + + L ++ + A
Sbjct: 214 ---NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 556 VMPSYSKA------------RLEAAIQDYEMLIREIPGNEE 584
+ P A ++ + P
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 35/351 (9%)
Query: 237 GNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYR 296
G+ K P+ + L + + + + + Y F+ L + + A+
Sbjct: 1 GSYNKPSETVIPESVDGLQE-NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
Query: 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSS 355
L+ L + E + + + P + + Y +G E A + K+++
Sbjct: 60 PVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
L +K A + + + + + +
Sbjct: 120 L--EKTYGPA-----WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI-GLEYGL 171
Query: 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475
+ A ++++ E +++ V G ++ A K DA +
Sbjct: 172 TNNSKLAERFFSQALSIAPED----------PFVMHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535
+ K + + G++ K KY EA + + L N+
Sbjct: 222 KIKAIGNEVTVDKWEPLLNN---LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY 278
Query: 536 CRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEM 574
S +G +E AV+ AL + + + A ++
Sbjct: 279 IHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 28/336 (8%), Positives = 72/336 (21%), Gaps = 94/336 (27%)
Query: 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335
+ + + ++ + + + DP +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395
L +A + K + + W +
Sbjct: 65 TLVELNKANELFYLSHKL--VDLYPSNPVS------------------WFAV-------- 96
Query: 396 SFGADSAPQVYALQAEALLRLQR-HQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLL 450
L + ++ A +K+ + G A++
Sbjct: 97 --------------GCYYLMVGHKNEHARRYLSKATTLEKTY------------GPAWIA 130
Query: 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYK 510
+ + A+ AAQ+ + G + K
Sbjct: 131 --YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY------------IGLEYGLTNNSK 176
Query: 511 EACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------- 563
A +S+ L + ++ + G+++ A + AL + +
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236
Query: 564 --------------RLEAAIQDYEMLIREIPGNEEV 585
+ A+ + + IP N
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-27
Identities = 43/322 (13%), Positives = 98/322 (30%), Gaps = 27/322 (8%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+ + + L + + ++RF D LA+ + + I+ A+L G + +
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
+ + + P + + Y + + +A ++ KSS++ A +
Sbjct: 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPA-----WI 411
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ + + + Y ++L A++ S
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTH-LPYLFLGMQHMQLGNILLANEYLQSSYAL 470
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
LL V + A+ Q+A + + K
Sbjct: 471 FQYD----------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS------NEKP 514
Query: 493 MASARL-RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCT 551
A+ G+ K Y A A ++GL ++ + A A+
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574
Query: 552 AALIVMPSYSKAR--LEAAIQD 571
+L + P+ A L+ A+++
Sbjct: 575 ESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 9e-23
Identities = 41/344 (11%), Positives = 86/344 (25%), Gaps = 52/344 (15%)
Query: 252 SSLNKLDPEELKFMGN---EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR 308
S+ +K D L+ + + Y +I + K+ L R
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368
I+ L + + IDP + GE K + + A
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND--LVDRHPEKAVT--- 375
Query: 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
L + + ++ + + P + A + H +A +Y
Sbjct: 376 --WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP-AWIGFAHSFAIEGEHDQAISAYTT 432
Query: 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
+ + + L ++ G A + Q + + + ++
Sbjct: 433 AARLFQGTHLPYLFL----------GMQHMQLGNILLANEYLQSSYALFQYDPLLLNE-- 480
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL-------LCNRAACRSKLG 541
G + F S + A + L N KL
Sbjct: 481 ----------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530
Query: 542 QYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
Y+ A++ L++ + + AI
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 2e-20
Identities = 45/382 (11%), Positives = 90/382 (23%), Gaps = 67/382 (17%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALAL---YDRAI 286
G + F + + +D E + + A E L L Y
Sbjct: 206 RGQVYTN-LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264
Query: 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346
+++ ++ + +I A F
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324
Query: 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406
++ K + D + HL E N L + +++ + +
Sbjct: 325 LAITTK----ILEIDPYNLDVYPLHL---ASLHESGEKNKLYLISNDLVDRHPEK-AVTW 376
Query: 407 ALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR 462
L + + EA ++KS P+F G A++ A + G
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQF------------GPAWIG--FAHSFAIEGE 422
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522
+ A+ AA++ G + A
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLF------------LGMQHMQLGNILLANEYLQSSYAL 470
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL-------IVMPSYSKA------------ 563
Y+ +LL + A+ AL ++
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530
Query: 564 RLEAAIQDYEMLIREIPGNEEV 585
+AAI + + V
Sbjct: 531 MYDAAIDALNQGLLLSTNDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 3e-20
Identities = 45/346 (13%), Positives = 90/346 (26%), Gaps = 59/346 (17%)
Query: 249 QCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR 308
C+ L L +G + ++A L + I + + L
Sbjct: 158 FCLVKLYDWQ-GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQVYTNLSN 215
Query: 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368
A KEA+ +D + A +L + + E + S+ + +
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275
Query: 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
L K + EL+R D L + + + + +A+ L R + K
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTK 330
Query: 429 S----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484
P + + +G + D P
Sbjct: 331 ILEIDPYN--------------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376
Query: 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSK 539
V G +K EA +S+ A+ A +
Sbjct: 377 LAV------------GIYYLCVNKISEARRYFSKSSTMDPQFGPAWI-----GFAHSFAI 419
Query: 540 LGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
G++++A+ T A + + A + +
Sbjct: 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 1e-17
Identities = 50/378 (13%), Positives = 106/378 (28%), Gaps = 87/378 (23%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSS---------------------------- 291
+ L+ ++A + +++ A + ++ + I +
Sbjct: 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144
Query: 292 ----KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH----------------H 331
+ R + L+ L AL E A+ +
Sbjct: 145 LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY 204
Query: 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391
+Y L ++A YK+ A D EA L + + W+ +LK
Sbjct: 205 LRGQVYTNLSNFDRAKECYKE----ALMVDAKCYEAFD-QLVSNHLLTADEEWDLVLKLN 259
Query: 392 QNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451
+ S + + + + + Y S + GL + LL+
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS----------INGLEKSSDLLL 309
Query: 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE 511
+A RF D + +IDP N +V L L ++ + +
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------------LHLASLHESGEKNK 357
Query: 512 ACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-------- 563
++ ++ +V + + +A + + + P + A
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 564 ----RLEAAIQDYEMLIR 577
+ AI Y R
Sbjct: 418 AIEGEHDQAISAYTTAAR 435
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 42/329 (12%), Positives = 90/329 (27%), Gaps = 67/329 (20%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVEC 316
+ E G A +A ++ + + + A++
Sbjct: 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78
Query: 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376
A +DP H LA+ + A A++ + L +Q +
Sbjct: 79 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA--WLLSQPQYEQL----------- 125
Query: 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK----SPKF 432
+ + D + ++E + +P
Sbjct: 126 -------GS-------VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
A L +Y + ++ A + A ++ P++ A
Sbjct: 172 --------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-----------A 206
Query: 493 MASARLRGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAV 547
+L G L ++ +EA AY+ L+ N A S + QY+ A
Sbjct: 207 QLWNKL-GATLANGNRPQEALDAYNRALDINPGYVRVMY-----NMAVSYSNMSQYDLAA 260
Query: 548 EDCTAALIVMPSYSKARLEAAIQDYEMLI 576
+ A+ + + EA+ + +
Sbjct: 261 KQLVRAIYMQVGGTTPTGEASREATRSMW 289
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 7e-19
Identities = 33/289 (11%), Positives = 76/289 (26%), Gaps = 47/289 (16%)
Query: 307 GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366
G ++ + YH + +L +A ++ Q + E
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEA----VCQAAPEREE 56
Query: 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSY 426
A + E ++ + + AL A + A S
Sbjct: 57 A---WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL-AVSHTNEHNANAALASL 112
Query: 427 NK----SPKFCLEYYTKLFGLAG-GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481
P++ L + + A + + A +++PN+
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172
Query: 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAAC 536
++ G L ++ Y A +E + +N A
Sbjct: 173 QLHAS------------LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN-----KLGAT 215
Query: 537 RSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
+ + ++A++ AL + P Y + + + A +
Sbjct: 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 7e-17
Identities = 46/311 (14%), Positives = 86/311 (27%), Gaps = 82/311 (26%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKFMGNEA---YNKARFEDALALYDRAIAIN 289
+G + + + I +LN LDP+++ A N+ ALA +
Sbjct: 61 LGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119
Query: 290 ---------------SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334
++ E A+ ++P + H L
Sbjct: 120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179
Query: 335 MLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNV 394
+LY + A ++ +++ + + D A+ WN L
Sbjct: 180 VLYNLSNNYDSAAANLRRA--VELRPDDAQL------------------WNKL------- 212
Query: 395 ISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLL 450
GA L R QEA D+YN++ P + Y
Sbjct: 213 ---GA------------TLANGNRPQEALDAYNRALDINPGYVRVMYN------------ 245
Query: 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYK 510
A Y +++ A K A + + LL ++
Sbjct: 246 --MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303
Query: 511 EACYAYSEGLE 521
Y++ +E
Sbjct: 304 LVELTYAQNVE 314
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 25/207 (12%), Positives = 61/207 (29%), Gaps = 30/207 (14%)
Query: 252 SSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIE 311
+ +D ++ + + L A+ +N + A ++
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDS 190
Query: 312 ALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS---------------SSL 356
A + A+ + P + ++L ++A+ Y ++ S
Sbjct: 191 AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
Query: 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416
+N A L + A ++ T ++ ++ L +
Sbjct: 251 SNMSQYDLAAK---QLVR---AIYMQVGG-----TTPTGEASREATRSMWDFFRMLLNVM 299
Query: 417 QRHQEAHDSYNKSPKFCLEYYTKLFGL 443
R +Y ++ +E + K FGL
Sbjct: 300 NRPDLVELTYAQN----VEPFAKEFGL 322
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-26
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 495 SARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+ +GN FK Y A Y+E ++ + N++L NRAAC +KL ++++A++DC +
Sbjct: 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74
Query: 555 IVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQ 593
+ + K A + YE ++ P NEE +
Sbjct: 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 2e-21
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 251 ISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310
++ +N +E K GNE + K + A+ Y+ A+ + A SN++A L L
Sbjct: 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ 64
Query: 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
AL +C IR+D + + + R A + E KA Y+
Sbjct: 65 RALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 410 AEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466
A L +L Q A D + C+ + K Y+ +A +A + A
Sbjct: 54 AACLTKLMEFQRALDDCDT----CIRLDSKFIK-------GYIR--KAACLVAMREWSKA 100
Query: 467 VKTAQDAAQIDPNNKEVIKGVKMAK 491
+ +DA Q+DP+N+E +GV+
Sbjct: 101 QRAYEDALQVDPSNEEAREGVRNCL 125
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 256 KLDPEELKFMGN--EAYNK-ARFEDALALYDRAIAINSS--KATYRSNKSAALIGLGRQI 310
K DPE N K F+ AL D I ++S K R K+A L+ +
Sbjct: 41 KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR--KAACLVAMREWS 98
Query: 311 EALVECKEAIRIDP 324
+A ++A+++DP
Sbjct: 99 KAQRAYEDALQVDP 112
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-25
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
E+ K GN + + + +A+ YD+ I SNK+ ALI LG +A+ C++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
+R R L +RL A+ AV +
Sbjct: 65 LRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIP 97
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-21
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548
M++ + +GN LFK Y+EA + Y + + + N V N+A KLG+Y +A++
Sbjct: 1 MSQFEK-QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59
Query: 549 DCTAALIVMPSYSKA-----------RLEAAIQDYEMLIREI-PGNEEVGRA 588
C L + + A+ ++ + E+ E R+
Sbjct: 60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 29/114 (25%)
Query: 412 ALLRLQRHQEAHDSYNKSPKFCLE---YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468
+L + ++EA Y++ + Y+ +A I G + A++
Sbjct: 13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSN-------------KAMALIKLGEYTQAIQ 59
Query: 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522
Q + +R L ++ + A + +
Sbjct: 60 MCQQGLRYTSTA-------------EHVAIRSKLQYRLELAQGAVGSVQIPVVE 100
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-25
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 466 AVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE---H 522
+ P E A ++ R GN LFK Y A AY++ L
Sbjct: 1 GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQ 570
+VL NRAAC KL Y+KA + + A+ KA RL+ A+
Sbjct: 61 PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120
Query: 571 DYEMLIREIPGNEEVGRAL 589
D + + P N+ AL
Sbjct: 121 DLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 4e-19
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSS---KATYRSNKSAALIGLGRQIEALVEC 316
E+L+ GNE + + ALA Y +A+ ++++ +A N++A + L +A E
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
+AI D +A +R + +LG ++AV ++
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 410 AEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466
A L+L+ + +A +K +E K A R+Q GR + A
Sbjct: 72 AACHLKLEDYDKAETEASK----AIEKDGGDVK-------ALY--RRSQALEKLGRLDQA 118
Query: 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496
V Q ++P NK + ++ +S
Sbjct: 119 VLDLQRCVSLEPKNKVFQEALRNISGPSSG 148
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 19/129 (14%)
Query: 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471
L + + A +Y ++ + A L RA ++ ++ A A
Sbjct: 37 ELFKCGDYGGALAAYTQALGLDATPQDQ-------AVLHRNRAACHLKLEDYDKAETEAS 89
Query: 472 DAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531
A + D + KA+ R R L K + +A + E N V
Sbjct: 90 KAIEKDGGD---------VKAL--YR-RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137
Query: 532 NRAACRSKL 540
Sbjct: 138 ALRNISGPS 146
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 3e-24
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548
M + + +GN +A YSE ++ + +N VL NR+A +K G Y+KA E
Sbjct: 1 MEQV-NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Query: 549 DCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQ 595
D + + P + K R E A + YE ++ N ++ L + +
Sbjct: 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 5e-22
Identities = 26/93 (27%), Positives = 43/93 (46%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
ELK GN+A + +DAL Y AI ++ SN+SAA G +A + +
Sbjct: 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
+ + P + + + R A L E+A Y++
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
R+ Y G ++ A + + P+ K +R + L ++++EA
Sbjct: 44 RSAAYAKKGDYQKAYEDGCKTVDLKPDW---------GKGY--SR-KAAALEFLNRFEEA 91
Query: 513 CYAYSEGLEHEAYNSVLLCNRAACRSK 539
Y EGL+HEA N L ++
Sbjct: 92 KRTYEEGLKHEANNPQLKEGLQNMEAR 118
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 410 AEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466
+ A + +Q+A++ K ++ + K Y +A RFE+A
Sbjct: 45 SAAYAKKGDYQKAYEDGCK----TVDLKPDWGK-------GYS--RKAAALEFLNRFEEA 91
Query: 467 VKTAQDAAQIDPNNKEVIKGVKMAKA 492
+T ++ + + NN ++ +G++ +A
Sbjct: 92 KRTYEEGLKHEANNPQLKEGLQNMEA 117
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 8e-04
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 256 KLDPEELKFMGNEA---YNKARFEDALALYDRAIAINS--SKATYRSNKSAALIGLGRQI 310
KLDP N + K ++ A + + + K R K+AAL L R
Sbjct: 32 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR--KAAALEFLNRFE 89
Query: 311 EALVECKEAIRIDP 324
EA +E ++ +
Sbjct: 90 EAKRTYEEGLKHEA 103
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 5e-24
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 470 AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529
+ ++P+ ++K +GN F+ Y +A Y+E ++ ++ L
Sbjct: 5 HHHHSHMNPDLALMVK------------NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL 52
Query: 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIR 577
NRAAC +KL +++ A++DC + + P++ K A+ Y+ +
Sbjct: 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112
Query: 578 EIPGNEEVGRALFEAQVQLK 597
+E +
Sbjct: 113 LDSSCKEAADGYQRCMMAQY 132
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-22
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 252 SSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIE 311
S +N +K GNE + K + A+ Y AI N A SN++A L
Sbjct: 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 68
Query: 312 ALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371
AL +C+E I+++P + + + R A + + KA+ Y+K+ L + A
Sbjct: 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG----- 123
Query: 372 LTKCNEAR 379
+C A+
Sbjct: 124 YQRCMMAQ 131
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
RA Y F+ A+K ++ Q++P K R + L Y +A
Sbjct: 56 RAACYTKLLEFQLALKDCEECIQLEPTF---------IKGY--TR-KAAALEAMKDYTKA 103
Query: 513 CYAYSEGLEH-----EAYNSVLLCNRA 534
Y + L+ EA + C A
Sbjct: 104 MDVYQKALDLDSSCKEAADGYQRCMMA 130
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 410 AEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466
A +L Q A + C++ + K Y +A A + A
Sbjct: 57 AACYTKLLEFQLALKDCEE----CIQLEPTFIK-------GYTR--KAAALEAMKDYTKA 103
Query: 467 VKTAQDAAQIDPNNKEVIKGVKMA-KAMAS 495
+ Q A +D + KE G + A +
Sbjct: 104 MDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-24
Identities = 43/311 (13%), Positives = 84/311 (27%), Gaps = 57/311 (18%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
G + +A+ L++ A+ + +++ A+ + + + P
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
A LA+ + +A + L A A E
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRD--WLRYTPAYAHL---------VTPAEEGAGG 178
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444
L + +LL E + + + +
Sbjct: 179 AGLGPSKRI----------------LGSLLSDSLFLEVKELFLAAVRLDPTSI------- 215
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504
+ ++ +G ++ AV A + PN+ + +L G L
Sbjct: 216 -DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-----------YLLWNKL-GATLA 262
Query: 505 KASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
++ +EA AY LE + N LG + +AVE AL +
Sbjct: 263 NGNQSEEAVAAYRRALELQPGYIRSRY-----NLGISCINLGAHREAVEHFLEALNMQRK 317
Query: 560 YSKARLEAAIQ 570
R E
Sbjct: 318 SRGPRGEGGAM 328
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 35/190 (18%)
Query: 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALV 314
+DP+ +G ++ A+ + A+++ + + A L + EA+
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272
Query: 315 ECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK 374
+ A+ + P Y R+ + L + LG +AV H+ ++ ++ Q+
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGP-----RGEG 325
Query: 375 CNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434
+ + W+ L AL L + + + L
Sbjct: 326 GAMSENI--WSTL----------------------RLALSMLGQSDAYGAADAR----DL 357
Query: 435 EYYTKLFGLA 444
+FGL
Sbjct: 358 STLLTMFGLP 367
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 32/352 (9%), Positives = 80/352 (22%), Gaps = 47/352 (13%)
Query: 239 IVKQPSGEFPQCISSLNK---LDPEELKFMGNEAYNKA--RFEDALALYDRAIAINSSKA 293
KQ + + L + L P+++ + + +A + L + +A + +
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQV 429
Query: 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
++ L L + + P A L ++ + ++
Sbjct: 430 VAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQA 489
Query: 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413
L + +A + + L LL D A
Sbjct: 490 HGLTPDQVVA-------IASNIGGKQALATVQRLLPVLCQAHGLTPDQV-VAIASNGGGK 541
Query: 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDA 473
L+ Q ++ + + A + + A
Sbjct: 542 QALETVQRLLPVLCQAHGLTPDQVVAIAS----------NGGGKQALETVQRLLPVLCQA 591
Query: 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533
+ A+AS + + V + +
Sbjct: 592 HGLTQVQ---------VVAIAS---NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639
Query: 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
+ L ++ + A + P A ++ +
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 691
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 9e-23
Identities = 29/337 (8%), Positives = 74/337 (21%), Gaps = 51/337 (15%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+L + + L + +A + ++ ++ L
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
L +A + P A L ++ + ++ L + A+ H
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD----QVVAIASHG 301
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK---- 428
+ L+ LL D A L+ Q +
Sbjct: 302 ---GGKQALETVQRLLPVLCQAHGLTPDQV-VAIASHDGGKQALETVQRLLPVLCQAHGL 357
Query: 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
+P + + A + + A + P+ I
Sbjct: 358 TPDQVVAIAS--------------NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 403
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548
+A+ + + V + + + L ++ +
Sbjct: 404 GKQAL-------------ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450
Query: 549 DCTAALIVMPSYSKA------------RLEAAIQDYE 573
+ P+ A ++ +
Sbjct: 451 VLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 1e-21
Identities = 33/346 (9%), Positives = 79/346 (22%), Gaps = 46/346 (13%)
Query: 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325
G +A AL + + ++ ++ + L L +A + P
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPA 224
Query: 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWN 385
A L ++ + ++ L + A+ ++ + L+
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD----QVVAIASNI---GGKQALETVQ 277
Query: 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445
LL D A L+ Q ++ + +
Sbjct: 278 RLLPVLCQAHGLTPDQV-VAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS--- 333
Query: 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505
A + + A + P+ A+AS G
Sbjct: 334 -------HDGGKQALETVQRLLPVLCQAHGLTPDQ---------VVAIAS---NGGGKQA 374
Query: 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-- 563
+ + V + + ++ L ++ + A + P A
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVVAIA 433
Query: 564 ----------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599
++ + P A+ +
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVV---AIASHDGGKQAL 476
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 4e-21
Identities = 27/371 (7%), Positives = 72/371 (19%), Gaps = 62/371 (16%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
L + + L + + + ++ ++ L +
Sbjct: 423 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS---------------SSLA 357
L +A + P A L ++ + ++
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 542
Query: 358 NQKDIAKAEA------------LHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405
+ + + + + + L+ LL
Sbjct: 543 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQV-VA 601
Query: 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED 465
A L+ Q ++ + A +
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS----------HDGGKQALETVQR 651
Query: 466 AVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525
+ A + P+ A+AS G + +
Sbjct: 652 LLPVLCQAHGLTPDQ---------VVAIAS---NGGGKQALETVQRLLPVLCQAHGLTQE 699
Query: 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
V + + + L ++ + A + P A ++ +
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759
Query: 574 MLIREIPGNEE 584
P
Sbjct: 760 QAHGLTPAQVV 770
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 1e-20
Identities = 30/311 (9%), Positives = 69/311 (22%), Gaps = 30/311 (9%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
L + A + L + +A + + ++ L
Sbjct: 491 GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 550
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
L +A + P A L ++ + ++ L + +A
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA-------IA 603
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ + L+ LL A L+ Q ++
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQV-VAIASHDGGKQALETVQRLLPVLCQAHGL 662
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
+ + GG A + + A + A
Sbjct: 663 TPDQVVAIASNGGGKQ----------ALETVQRLLPVLCQAHGLTQEQ---------VVA 703
Query: 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552
+AS + + V + + + L ++ +
Sbjct: 704 IAS---NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 760
Query: 553 ALIVMPSYSKA 563
A + P+ A
Sbjct: 761 AHGLTPAQVVA 771
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 2e-20
Identities = 28/328 (8%), Positives = 72/328 (21%), Gaps = 43/328 (13%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
+ G + L + +A + + ++ L L
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377
+A + A L ++ + + + A +
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQ--AHGLTPAQVVA-----IASHDGG 642
Query: 378 ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK----SPKFC 433
+ L+ LL D A L+ Q + + +
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQV-VAIASNGGGKQALETVQRLLPVLCQAHGLTQEQV 701
Query: 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493
+ + A + + A + P+ A+
Sbjct: 702 VAIAS--------------NNGGKQALETVQRLLPVLCQAHGLTPDQ---------VVAI 738
Query: 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
AS G + + V + + + L ++ +
Sbjct: 739 AS---NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQD 795
Query: 554 LIVMPSYSKA-----RLEAAIQDYEMLI 576
+ + A + A++ + L+
Sbjct: 796 HGLTLAQVVAIASNIGGKQALETVQRLL 823
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 2e-12
Identities = 36/313 (11%), Positives = 87/313 (27%), Gaps = 37/313 (11%)
Query: 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
L + + + L + +A + + ++ L L
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755
Query: 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLT 373
+A + P A L ++ + + L + +A A +
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNI----- 810
Query: 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYAL---QAEALLRLQRHQEAHDSYNKSP 430
+ L+ LL Q + L Q A+ ++A ++ +
Sbjct: 811 --GGKQALETVQRLLPVL-----------CQAHGLTQDQVVAIASNIGGKQALETVQRL- 856
Query: 431 KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
L + GL + + + A++T Q + + G+ +
Sbjct: 857 ---LPVLCQDHGLTPD------QVVAIASNIGGKQALETVQRLLPVLCQD----HGLTLD 903
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC 550
+ +A A G + + GL + V + + + + L ++ +
Sbjct: 904 QVVAIASNGGKQALETVQRLLPVLCQDHGLTPD--QVVAIASNSGGKQALETVQRLLPVL 961
Query: 551 TAALIVMPSYSKA 563
+ P+ A
Sbjct: 962 CQDHGLTPNQVVA 974
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 19/228 (8%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
L + G + L + +A + ++ ++ L
Sbjct: 729 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRL 788
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
L + + A L ++ + ++ L + A+ ++
Sbjct: 789 LPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQ----DQVVAIASNI 844
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ L+ LL D Q A+ ++A ++ +
Sbjct: 845 G---GKQALETVQRLLPVLCQDHGLTPD--------QVVAIASNIGGKQALETVQRL--- 890
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480
L + GL + I A + + + P+
Sbjct: 891 -LPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQ 937
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 8e-24
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV 547
+ +A + + N FKA Y+ A YS+ +E N++ NR+ + Y A+
Sbjct: 9 ALKRAEE-LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 67
Query: 548 EDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQ 595
D T A+ + Y K + AA++DYE +++ P +++ E
Sbjct: 68 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127
Query: 596 LKKQRGED 603
+K++ E
Sbjct: 128 VKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-20
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EELK N+ + +E+A+ Y +AI +N S A Y N+S A + AL + A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDIAKA-EALHKHLTKCNE 377
I +D Y + ++R A LG+ A+ Y+ + + KD + +K + +
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133
Query: 378 ARELK 382
R +
Sbjct: 134 ERAIA 138
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 14/109 (12%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
R+ Y+ + A+ A A ++D K R R K++ A
Sbjct: 53 RSLAYLRTECYGYALGDATRAIELDKKY---------IKGY--YR-RAASNMALGKFRAA 100
Query: 513 CYAYSEGLEHEAYNSVLLCNRAACRSKLGQ--YEKAVEDCTAALIVMPS 559
Y ++ + ++ C + Q +E+A+ V+ S
Sbjct: 101 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 410 AEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDA 466
+ A LR + + A + +E Y K Y RA +A G+F A
Sbjct: 54 SLAYLRTECYGYALGDATR----AIELDKKYIK-------GYY--RRAASNMALGKFRAA 100
Query: 467 VKTAQDAAQIDPNNKEVIKGVKMAKAM 493
++ + ++ P++K+ + +
Sbjct: 101 LRDYETVVKVKPHDKDAKMKYQECNKI 127
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 8e-24
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ELK GN + ++ +A A Y RAI N A Y +N++ + + + +AL +C+ A
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ +D +AH L + ++A+++ +++ SLA ++ + + + L + R
Sbjct: 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129
Query: 380 ELKR 383
Sbjct: 130 WNSI 133
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 486 GVKMAKAMA-SARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544
G M A + +GN LF KY EA Y + +V NRA C K+ Q E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 545 KAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEA 592
+A+ DC AL + KA + AI + + +
Sbjct: 61 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 120
Query: 593 QV-QLKKQRGEDVKDMK 608
+ KK+R +++ +
Sbjct: 121 ALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 35/155 (22%)
Query: 402 APQVYALQAEAL-------LRLQRHQEAHDSYNKSPKFCLE---YYTKLFGLAGGAYLLI 451
P + + A+ L +++ EA Y ++ YYT
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTN------------ 48
Query: 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE 511
RA Y+ + E A+ + A ++D + VK A G + Y E
Sbjct: 49 -RALCYLKMQQPEQALADCRRALELDGQS------VK-----AHFF-LGQCQLEMESYDE 95
Query: 512 ACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKA 546
A + + ++ + ++
Sbjct: 96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-23
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 473 AAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532
++ D E +K GN K ++ A + Y + +E N+V CN
Sbjct: 4 GSEEDSAEAERLK------------TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCN 51
Query: 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIP 580
RAA SKLG Y AV+DC A+ + P+YSKA + A+ Y+ + P
Sbjct: 52 RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111
Query: 581 GNEEVGRALFEAQVQLKK 598
NE L A+++L++
Sbjct: 112 DNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 4e-23
Identities = 37/101 (36%), Positives = 56/101 (55%)
Query: 252 SSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIE 311
S + + E LK GNE FE A+ Y +AI +N + A Y N++AA LG
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 312 ALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
A+ +C+ AI IDP Y +A+ R+ + L + +AV++YKK
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKK 105
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 256 KLDPEELKFMGNEA---YNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+L+P + N A + A+ +RAI I+ + + AL L + +EA
Sbjct: 40 ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEA 343
+ K+A+ +DP L + +L EA
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 20/139 (14%)
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
L +++D A+AE L T+ NE +++ + + I +A + +A A +
Sbjct: 3 LGSEEDSAEAERLK---TEGNEQMKVENFEAAVHFYGKAIELNPANA-VYFCNRAAAYSK 58
Query: 416 LQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQD 472
L + A + + Y+K AY + + +AV +
Sbjct: 59 LGNYAGAVQDCER----AICIDPAYSK-------AYG--RMGLALSSLNKHVEAVAYYKK 105
Query: 473 AAQIDPNNKEVIKGVKMAK 491
A ++DP+N+ +K+A+
Sbjct: 106 ALELDPDNETYKSNLKIAE 124
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 2e-23
Identities = 35/173 (20%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ELK GN + ++ +A A Y RAI N A Y +N++ + + + +AL +C+ A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ +D +AH L + ++A+++ +++ SLA ++ + + + L + R
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ + + S+ + AE L+ Q H+ +
Sbjct: 125 WNSIEERRIHQESELHSYLTR------LIAAERERELEECQRNHEGHEDDGHI 171
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-19
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 13/132 (9%)
Query: 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549
+ + + +GN LF KY EA Y + +V NRA C K+ Q E+A+ D
Sbjct: 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 550 CTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQL- 596
C AL + KA + AI + + + +++
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120
Query: 597 KKQRGEDVKDMK 608
KK+R +++ +
Sbjct: 121 KKKRWNSIEERR 132
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 28/200 (14%)
Query: 412 ALLRLQRHQEAHDSYNKSPKFCLE---YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468
L +++ EA Y ++ YYT RA Y+ + E A+
Sbjct: 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTN-------------RALCYLKMQQPEQALA 59
Query: 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528
+ A ++D + KA G + Y EA +
Sbjct: 60 DCRRALELDGQS---------VKAH---FFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107
Query: 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRA 588
+ ++ + ++ + + E + E N E
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167
Query: 589 LFEAQVQLKKQRGEDVKDMK 608
+ Q + K M
Sbjct: 168 DGHIRAQQACIEAKHDKYMA 187
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 4e-23
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ K +GN+AY K F+ AL YD+A ++ + TY +N++A G + C++A
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 320 IRIDP-------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
I + +A+ R+ YF+ + + A+ Y KS + D+ K
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 7e-20
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL---- 554
GN +K + A Y + E + N + N+AA + G Y K E C A+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 555 ---IVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599
+KA + + AI Y + +V + +A+ LK+Q
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AEHRTPDVLKKCQQAEKILKEQ 128
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 412 ALLRLQRHQEAHDSYNKSPKFC---LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468
+ + A Y+K+ + + Y T +A VY G + +
Sbjct: 13 DAYKKKDFDTALKHYDKAKELDPTNMTYITN-------------QAAVYFEKGDYNKCRE 59
Query: 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528
+ A ++ N+E + ++AKA A GN FK KYK+A + Y++ L E
Sbjct: 60 LCEKAIEVGRENREDYR--QIAKAYAR---IGNSYFKEEKYKDAIHFYNKSLA-EHRTPD 113
Query: 529 LLCNRAACRSKLGQYEK 545
+L L + E+
Sbjct: 114 VLKKCQQAEKILKEQER 130
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-23
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
++LK GN A + + A+ LY +A++I + Y SN++AA G+ +A + + A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDIAKAEALHKHLTKCNEA 378
+DP Y +A RL + F + + + A Y+K N A L K EA
Sbjct: 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131
Query: 379 RELKRWNDLLKETQNVISFGADSAP 403
+ S GA P
Sbjct: 132 NRGAEPPADDVDDAAGASRGAGGMP 156
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 5e-19
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
GN +Y +A Y++ L N + L NRAA S GQ+EKA ED A +V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 559 SYSKA------------RLEAAIQDYEMLIREIP--GNEEVGRALFEAQVQLKKQRGED 603
YSKA + A + YE I G++ + R L + ++++
Sbjct: 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-23
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EE + G E + K+ + +A+ Y I A SN++AAL L EA+ +C +A
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKHLTKCNEA 378
I DP + RA+ R A + E A+ + + A + + A + + K ++
Sbjct: 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
Query: 379 R 379
R
Sbjct: 125 R 125
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-21
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 496 ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555
ARL G F S + A AY+E ++ ++ NRAA +KL + +A+ DC A+
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 556 VMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
P++ +A +A++ + + A Q+ K +
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 25/182 (13%), Positives = 42/182 (23%), Gaps = 69/182 (37%)
Query: 407 ALQAEAL-------LRLQRHQEAHDSYNKSPKFCLE---YYTKLFGLAGGAYLLIVRAQV 456
+++AE A +Y + K E Y+ RA
Sbjct: 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN-------------RAAA 47
Query: 457 YIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516
F +A+ A + DPN V+ AY
Sbjct: 48 LAKLMSFPEAIADCNKAIEKDPNF------VR--------------------------AY 75
Query: 517 SEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLI 576
+A + + +Y A+E AA + I
Sbjct: 76 I--------------RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121
Query: 577 RE 578
+
Sbjct: 122 SQ 123
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-22
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 252 SSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIE 311
S+ K +GN AY + FE A YD+AI ++ S T+ +NK+A + E
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 312 ALVECKEAIRIDP-------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364
+ C++A+ + +A R + + + AV + +S S ++ K
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120
Query: 365 A 365
Sbjct: 121 K 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL---- 554
GN +K +++A Y + +E + N N+AA + ++ + V+ C A+
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 555 ---IVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQ 593
+KA L A+Q + + + E+ + + E +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL-SEFRDPELVKKVKELE 126
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 412 ALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467
A + + ++AH Y+K+ P + +Y +A VY +F + V
Sbjct: 17 AAYKQKDFEKAHVHYDKAIELDPSN-ITFYNN-------------KAAVYFEEKKFAECV 62
Query: 468 KTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS 527
+ + A ++ + K + AKAM+ GN K + A + L
Sbjct: 63 QFCEKAVEVGRETRADYKLI--AKAMSR---AGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117
Query: 528 VL 529
++
Sbjct: 118 LV 119
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 41/316 (12%), Positives = 79/316 (25%), Gaps = 62/316 (19%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
G + + + + AI + A + A+V + + + P
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
+A LA+ Y + A K + K +R
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKN--WIKQNPKYKYL-----VKNKKGSPGLTRRM 183
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444
+ ++ + + + Y ++ G
Sbjct: 184 S-------------------------KSPVDSSVLEGVKELYLEA--------AHQNGDM 210
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504
L ++ +G F A+ A + P + RL G L
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-----------YSLWNRL-GATLA 258
Query: 505 KASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559
+ +EA AY+ LE + N LG Y +AV + AL +
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRSRY-----NLGISCINLGAYREAVSNFLTALSLQRK 313
Query: 560 YSKARLEAAIQDYEML 575
+ +
Sbjct: 314 SRNQQQVPHPAISGNI 329
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 46/306 (15%), Positives = 83/306 (27%), Gaps = 81/306 (26%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKFMGNEA---YNKARFEDALALYDRAIAIN 289
+G + + I +L + L P LK + A N + +DA I N
Sbjct: 105 LGITQAE-NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA------------HHRLAMLY 337
NK + R ++ V+ + Y A L +L+
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223
Query: 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397
GE +A+ + + L + + WN L
Sbjct: 224 HLSGEFNRAIDAFNAA--LTVRPEDYSL------------------WNRL---------- 253
Query: 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNK----SPKFCLEYYTKLFGLAGGAYLLIVR 453
GA L R +EA ++Y + P F Y
Sbjct: 254 GA------------TLANGDRSEEAVEAYTRALEIQPGFIRSRYN--------------L 287
Query: 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEV--IKGVKMAKAMASARLRGNLLFKASKYKE 511
I G + +AV A + ++ + ++ + +A L + +
Sbjct: 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347
Query: 512 ACYAYS 517
A
Sbjct: 348 AANLGD 353
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 16/139 (11%)
Query: 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518
A FE A + + + + + ++ + Y
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWIS----ENQEAQNQVTVSASEKGYYF 56
Query: 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLE 566
E+ + R K G + AA++ P ++A +
Sbjct: 57 HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ 116
Query: 567 AAIQDYEMLIREIPGNEEV 585
AAI + + P N +
Sbjct: 117 AAIVALQRCLELQPNNLKA 135
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 29/330 (8%), Positives = 67/330 (20%), Gaps = 96/330 (29%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVEC 316
++ + + + + +A+ ++++ A + + ++ L + A +
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 317 ---KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLT 373
+ + + G+ A+ Y+ +
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDM-------- 110
Query: 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS---- 429
+ + A K
Sbjct: 111 ----------YGQI----------------------GSYFYNKGNFPLAIQYMEKQIRPT 138
Query: 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489
+Y Q Y + A + ++ PN
Sbjct: 139 TTDPKVFYE--------------LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW--- 181
Query: 490 AKAMASARLRGNLLFK---ASKYKEACYAYSEGLE-------------HEAYNSVLLCNR 533
R +K A Y + +E EA
Sbjct: 182 ---------RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE-----YI 227
Query: 534 AACRSKLGQYEKAVEDCTAALIVMPSYSKA 563
A + KA L + P+ KA
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNKKA 257
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 3e-18
Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 41/238 (17%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+ K + ++ G K + A+ Y A+ ++++ + G A
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
+ ++ IR + + L Y+ E KA S + K L + +I
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIG------- 178
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
+ A A + A Y K +
Sbjct: 179 -----------YLWR-------------------ARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
C K A A Y A ++ +DP NK+ I G+KM
Sbjct: 209 CAPGGAKYKDELIEANEY--IAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 23/231 (9%), Positives = 59/231 (25%), Gaps = 49/231 (21%)
Query: 376 NEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEA---HDSYNKS--- 429
+ + + + ++ + + +S +Y +A L ++ A ++Y
Sbjct: 11 DFLFKNNNYAEAIEVFNKLEAKKYNSP-YIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 430 -PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
++ ++ + G+ A++ Q A D ++
Sbjct: 70 TKAKSADFE--------------YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ-- 113
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548
G+ + + A + + + + +Y KA
Sbjct: 114 ----------IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163
Query: 549 DCTAALIVMPSYSKA---------------RLEAAIQDYEMLIREIPGNEE 584
L + P+ + A YE LI
Sbjct: 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTA---ALI 555
+ LFK + Y EA +++ + + + RA C +L +Y+ A +D +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 556 VMPSYSKA------------RLEAAIQDYEMLIR 577
+ S + AIQ Y+ +
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 43/298 (14%), Positives = 83/298 (27%), Gaps = 79/298 (26%)
Query: 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331
+ L R + S + G +A +AI + +
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTG---GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKET 391
A L + E E+A++ Y K+ L A A +
Sbjct: 62 NFANLLSSVNELERALAFYDKALEL--DSSAATA------------------YYGA---- 97
Query: 392 QNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451
+ + ++EA D + K+ + +E + +
Sbjct: 98 ------------------GNVYVVKEMYKEAKDMFEKALRAGMENGD--------LFYM- 130
Query: 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYK 510
V + + + A+ Q A +++ N+ AR G L
Sbjct: 131 -LGTVLVKLEQPKLALPYLQRAVELNEND-------------TEARFQFGMCLANEGMLD 176
Query: 511 EACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563
EA ++ E +A+ N + EKA+E A+ + P + A
Sbjct: 177 EALSQFAAVTEQDPGHADAFY-----NAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 29/287 (10%), Positives = 69/287 (24%), Gaps = 82/287 (28%)
Query: 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325
+E A + +AI N A N + L + AL +A+ +D
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWN 385
A++ +Y ++A ++K+ + +
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDL------------------FY 129
Query: 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLF 441
L L++L++ + A ++ +
Sbjct: 130 ML----------------------GTVLVKLEQPKLALPYLQRAVELNENDTEARFQ--- 164
Query: 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501
G ++A+ + DP + A A + G
Sbjct: 165 -----------FGMCLANEGMLDEALSQFAAVTEQDPGH---------ADAFYN---AGV 201
Query: 502 LLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQY 543
++A + ++ A + + +
Sbjct: 202 TYAYKENREKALEMLDKAIDIQPDHMLALH-----AKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
GN+ + + K E +G + + AL RA+ +N
Sbjct: 97 AGNVYVV-KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
+ R L G EAL + DP + A + + Y EKA+
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 350 YKK 352
K
Sbjct: 216 LDK 218
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
N++ E + ++ +K LD GN K +++A ++++A+
Sbjct: 63 FANLLSS-VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
L+ L + AL + A+ ++ A + M G ++A+S
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181
Query: 350 YKK 352
+
Sbjct: 182 FAA 184
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 1e-12
Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 56/218 (25%)
Query: 399 ADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRA 454
+ A Q +++A +++ K+ + + Y A
Sbjct: 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN--------------FA 64
Query: 455 QVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514
+ + E A+ A ++D + G GN+ YKEA
Sbjct: 65 NLLSSVNELERALAFYDKALELDSSAATAYYG------------AGNVYVVKEMYKEAKD 112
Query: 515 AYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------ 563
+ + L + + KL Q + A+ A+ + + ++A
Sbjct: 113 MFEKALRAGMENGDLFY-----MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167
Query: 564 ------RLEAAIQDYEMLIREIPGNEEV----GRALFE 591
L+ A+ + + + PG+ + G
Sbjct: 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 31/280 (11%), Positives = 68/280 (24%), Gaps = 41/280 (14%)
Query: 245 GEFPQCISSLNKLDPEELKF---MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA 301
Q ++S D E + G + A + +A+AI +
Sbjct: 26 ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85
Query: 302 ALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361
L G A + +DP Y+ AH + + G + A + +
Sbjct: 86 YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA--FYQDDPN 143
Query: 362 IAKAEA-LHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420
L+ K +E + + L + + + L + +
Sbjct: 144 DPFRSLWLYLAEQKLDEKQAKE---VLKQHFEKSDKEQWGWNIVEFYLG--NISEQTLME 198
Query: 421 EAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476
+ + + Y++ G + A + A
Sbjct: 199 RLKADATDNTSLAEHLSETNFY--------------LGKYYLSLGDLDSATALFKLAVAN 244
Query: 477 DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516
+ +N R L + ++
Sbjct: 245 NVHNFVE------------HRYALLELSLLGQDQDDLAES 272
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 28/336 (8%), Positives = 68/336 (20%), Gaps = 96/336 (28%)
Query: 263 KFMGNEAYNKARFEDALALYDRAIA----INSSKATYRSNKSAALIGLGRQIEALVECKE 318
+ + + E LA ++ +A + +A + LG + A + +
Sbjct: 9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 68
Query: 319 AIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEA 378
A+ I P + L + + G + A + L A
Sbjct: 69 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYA------------- 113
Query: 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCL 434
+ AL R + A D P
Sbjct: 114 -----HLNR----------------------GIALYYGGRDKLAQDDLLAFYQDDPND-- 144
Query: 435 EYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494
+ + + A + + + +
Sbjct: 145 ------------PFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW---------GWN 182
Query: 495 SARLRGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVED 549
+ + + + ++ E LG + A
Sbjct: 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF-----YLGKYYLSLGDLDSATAL 237
Query: 550 CTAALIVMPSYSKA------------RLEAAIQDYE 573
A+ + + + + +
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 2/109 (1%)
Query: 246 EFPQCISSLNKLDP--EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL 303
Q +K ++F + E A ++ +
Sbjct: 166 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
+ LG A K A+ + H + LG+ + ++ +
Sbjct: 226 LSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 25/203 (12%), Positives = 55/203 (27%), Gaps = 21/203 (10%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
+G + Q +G F + + LDP G Y R + A +
Sbjct: 83 LGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRI----DPCYHRAHHRLAMLYFRLGEAEK 345
+ A L + +A K+ ++ L + E+
Sbjct: 142 PNDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMER 199
Query: 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405
+ ++SLA +E + L + + ++ +
Sbjct: 200 LKADATDNTSLAEHL----SET---NFYLGKYYLSLGDLDSATALFKLAVANNVHNF-VE 251
Query: 406 YALQAEALLRLQRHQEAHDSYNK 428
+ L L + Q+ ++
Sbjct: 252 HRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 38/162 (23%)
Query: 459 AAGRFEDAVKTAQDA----AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514
+ E + + A D +++ RG L A
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLLYE------------RGVLYDSLGLRALARN 64
Query: 515 AYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------ 563
+S+ L E +N ++ G ++ A E + L + P+Y+ A
Sbjct: 65 DFSQALAIRPDMPEVFN-----YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119
Query: 564 ------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599
R + A D ++ P + L+ A+ +L ++
Sbjct: 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-18
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 36/159 (22%)
Query: 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL------------------ 520
+ +K V+ + +GN LF YKEA AY + L
Sbjct: 3 AEDDKLKSVEALRQ------KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWV 56
Query: 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAA 568
E + N L N + C +G +A E + L + KA +L+ A
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEA 116
Query: 569 IQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVKDM 607
+D ++L+R P V + + + ++ D +
Sbjct: 117 EEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVT 155
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAI------------------AINSSKATYRSNKSA 301
E L+ GNE + + +++A+ Y A+ ++ +N S
Sbjct: 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71
Query: 302 ALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA--NQ 359
+ +G EA E ++ + +A R A + ++A K
Sbjct: 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131
Query: 360 KDIAKAEALHKHLTKCNEARE 380
+A+ + +A
Sbjct: 132 SVVAREMKIVTERRAEKKADS 152
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 3e-18
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 34/158 (21%)
Query: 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL----------------EH 522
++E ++ K GN FK ++ EA Y E L +
Sbjct: 30 TDEEKVQSAFDIKE------EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQ 570
+ N A C +K Y KA++ + L + + KA LE A +
Sbjct: 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143
Query: 571 DYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVKDMK 608
+ P N ++ + +LK+ R +D
Sbjct: 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFG 181
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 4e-12
Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAI----------------NSSKATYRSNKSAAL 303
++K GNE + K +A+ Y A+ + + + N +
Sbjct: 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDI 362
+A+ + ++ID +A ++L + G E+A + K++SL N DI
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 363 AKAEALHKHLTKCNEARELKRW 384
+ L + K ++ +
Sbjct: 159 RNSYELCVNKLKEARKKDKLTF 180
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 27/184 (14%), Positives = 56/184 (30%), Gaps = 48/184 (26%)
Query: 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS 396
+F+ E +A+ YK+ A H + ++ L + ++
Sbjct: 48 FFKKNEINEAIVKYKE------------ALDFFIHTEEWDDQILLDKKKNIEI------- 88
Query: 397 FGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVR 453
A + + + +A D +K L+ K A
Sbjct: 89 -------SCNLNLATCYNKNKDYPKAIDHASK----VLKIDKNNVK-------ALY--KL 128
Query: 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR------GNLLFKAS 507
+ G E+A + AA ++PNN ++ ++ + G + K
Sbjct: 129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188
Query: 508 KYKE 511
Y+E
Sbjct: 189 LYEE 192
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 6e-18
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 1/126 (0%)
Query: 244 SGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAAL 303
SG + I+++ +++ + YNK R E+A + + Y +A
Sbjct: 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY 80
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
+ +A A + + RL KA ++ +N + +
Sbjct: 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK 140
Query: 364 -KAEAL 368
KA++
Sbjct: 141 IKAQSY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 6e-11
Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 24/142 (16%)
Query: 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518
A ++ T +D I + + I + + +EA +
Sbjct: 14 AVIDAINSGATLKDINAIPDDMMDDIYS------------YAYDFYNKGRIEEAEVFFRF 61
Query: 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLE 566
++ YN + AA Q+++A + A + +
Sbjct: 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121
Query: 567 AAIQDYEMLIREIPGNEEVGRA 588
A + +E++I+ + +A
Sbjct: 122 KAKECFELVIQHSNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509
+ A + GR E+A + D N + I G + ++
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG------------LAAIYQIKEQF 86
Query: 510 KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
++A Y+ + + + C+ +L KA E +
Sbjct: 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
L+ E + + ++ A AI + + GR EA V
Sbjct: 2 SLNITENESISTAVI---DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVF 58
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ D LA +Y + ++A Y + +L
Sbjct: 59 FRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 22/177 (12%), Positives = 40/177 (22%), Gaps = 52/177 (29%)
Query: 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376
K+ I + A ++ G E+A ++
Sbjct: 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF------------------------ 61
Query: 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436
+N A ++ Q+A D Y +
Sbjct: 62 -LCIYDFYN-----------------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103
Query: 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493
YT +F Q + A + + Q + K IK A+
Sbjct: 104 YTPVFHTG----------QCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 1e-17
Identities = 43/333 (12%), Positives = 95/333 (28%), Gaps = 57/333 (17%)
Query: 228 SRLGRNGVMGNIVKQPSGEFPQCISSLNKL----DPEELKFMGNEAYNKA-----RFEDA 278
++GR +M + ++ + +++L D +A K E
Sbjct: 28 QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKT 87
Query: 279 LALYDRAIAINSSKATYRSNKSAALIGLGRQI-EALVECKEAIRIDPCYHRAHHRLAMLY 337
L + + +A K AL EA V +A++++P A ++L +Y
Sbjct: 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147
Query: 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397
++ G+ A + + +L + K+ +L N + L++
Sbjct: 148 WKKGDVTSAHTCFSG--ALTHCKN---KVSL------QNLSMVLRQLQ------------ 184
Query: 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVY 457
+ ++ + + + + L G L +
Sbjct: 185 -----------TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL--GNAYLSLYFNTG 231
Query: 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAY 516
+ A+ A ++D + L R L Y EA +
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKA----------SSNPDLHLNRATLHKYEESYGEALEGF 281
Query: 517 SEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549
S+ + L + +E
Sbjct: 282 SQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 39/336 (11%), Positives = 92/336 (27%), Gaps = 69/336 (20%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAI--AINSSKATYRSNKSAALIGLGRQI-----EA 312
+++ A + + L + + + ++ + + +
Sbjct: 28 QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKT 87
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSSLANQKDIAKAEALHKH 371
L + +E + +A + + +A K+ + + ++ +A
Sbjct: 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA--VKLEPELVEA------ 139
Query: 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431
WN L E + AH ++ +
Sbjct: 140 ------------WNQL----------------------GEVYWKKGDVTSAHTCFSGALT 165
Query: 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE--VIKGVKM 489
C + L L + + D+V+ A+ A Q+D + I G
Sbjct: 166 HC-KNKVSLQNL-SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223
Query: 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549
+ G + + A + + N L NRA Y +A+E
Sbjct: 224 LSLYFN---TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280
Query: 550 CTAALIVMPSYSKA------------RLEAAIQDYE 573
+ A + P++ + RL + ++
Sbjct: 281 FSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 4e-12
Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 29/216 (13%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
G + P+ L+K L+PE ++ +G + K A + A+
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167
Query: 290 SSKATYRSNKSAALIGLGRQI---------EALVECKEAIRIDPCYHRAHHRLAMLYFR- 339
+K + + N S L L +++ + K A+++D R+ + L Y
Sbjct: 168 KNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 226
Query: 340 -------LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQ 392
+++A+S Y ++ + ++K + + HL + + + + + L+
Sbjct: 227 YFNTGQNPKISQQALSAYAQAEKV-DRKASSNPDL---HLNRATLHKYEESYGEALEGFS 282
Query: 393 NVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
+ + + + L L R +S K
Sbjct: 283 QAAALDPAWP-EPQQREQQLLEFLSRLTSLLESKGK 317
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 3e-17
Identities = 21/164 (12%), Positives = 53/164 (32%), Gaps = 8/164 (4%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
G R+ A+ L ++ ++ + A + G + ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
+ L + Y ++ + + AV K + L R+
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNV-----RFRLGVALDNLGRF 126
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
++ + + + + +V+ A + ++ RH+EA + K
Sbjct: 127 DEAIDSFKIALGLRPNEG-KVHRAIAFSYEQMGRHEEALPHFKK 169
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 7e-16
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
+G + +G + L + P+ +K +G +++ A+ L + N
Sbjct: 48 LGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
R AL LGR EA+ K A+ + P + H +A Y ++G E+A+ H
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166
Query: 350 YKKSSSL 356
+KK++ L
Sbjct: 167 FKKANEL 173
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 2e-12
Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 26/201 (12%)
Query: 286 IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345
+ + + Y +K + GR +A++ ++ D L + Y + G ++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405
++ SLA+ D K ++++++ + V + V
Sbjct: 61 GTELLER--SLADAPDNVKV-----ATVLGLTYVQVQKYDLAVPLLIKVAEANPINF-NV 112
Query: 406 YALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461
AL L R EA DS+ + P + A Y G
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA--------------IAFSYEQMG 158
Query: 462 RFEDAVKTAQDAAQIDPNNKE 482
R E+A+ + A ++D
Sbjct: 159 RHEEALPHFKKANELDEGASV 179
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 27/254 (10%), Positives = 61/254 (24%), Gaps = 84/254 (33%)
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ D + + + + G +AV ++ + D +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFD---VDV------------ 44
Query: 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLE 435
L A ++ + +S P
Sbjct: 45 ----ALHL----------------------GIAYVKTGAVDRGTELLERSLADAPDNVKV 78
Query: 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMAS 495
Y+ +++ AV A+ +P N +
Sbjct: 79 ATV--------------LGLTYVQVQKYDLAVPLLIKVAEANPIN-------------FN 111
Query: 496 ARL-RGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVED 549
R G L ++ EA ++ L + + A ++G++E+A+
Sbjct: 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR-----AIAFSYEQMGRHEEALPH 166
Query: 550 CTAALIVMPSYSKA 563
A + S
Sbjct: 167 FKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 2e-09
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
+G Q ++ + L K +P +G N RF++A+ + A+ +
Sbjct: 82 LGLTYVQ-VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337
++ + + +GR EAL K+A +D LA++
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE---LALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 1e-08
Identities = 17/138 (12%), Positives = 31/138 (22%), Gaps = 34/138 (24%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+ + AGR+ AV + D + +V G K
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALH------------LGIAYVKTGAVDRG 61
Query: 513 CYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA---- 563
L + ++ +Y+ AV P
Sbjct: 62 TELLERSLADAPDNVKVAT-----VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116
Query: 564 --------RLEAAIQDYE 573
R + AI ++
Sbjct: 117 GVALDNLGRFDEAIDSFK 134
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 462 RFEDAVKTAQDAAQIDP-NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520
++E +K+ + A + N++E ++ + K RG + FK KYK+A Y + +
Sbjct: 121 KYELHLKSFEKAKESWEMNSEEKLEQSTIVKE------RGTVYFKEGKYKQALLQYKKIV 174
Query: 521 EH---------------EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-- 563
+A N A C KL + A+E C AL + + K
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234
Query: 564 ----------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
E A D++ +++ P N+ L Q ++++Q
Sbjct: 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAI---------------AINSSKATYRSNKSAALI 304
+K G + + +++ AL Y + + + + N + +
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207
Query: 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDIA 363
L A+ C +A+ +D + R + + + E A + ++K L N K
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 364 KAEALHKHLTKCNEARELKRWNDLLK 389
A+ + + ARE K + ++ +
Sbjct: 268 TQLAVCQQRIRRQLAREKKLYANMFE 293
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 27/163 (16%)
Query: 351 KKSSSLANQKDIAKAEALH----KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406
K+S + +++ + ++ + + + + L ++ ++ + SF + A +
Sbjct: 133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ 192
Query: 407 ALQ-------AEALLRLQRHQEAHDSYNKSPKFCLEY---YTKLFGLAGGAYLLIVRAQV 456
AL+ A L+LQ A +S NK LE K R +
Sbjct: 193 ALRLASHLNLAMCHLKLQAFSAAIESCNK----ALELDSNNEK-------GLS--RRGEA 239
Query: 457 YIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499
++A FE A Q Q+ PNNK + + + +L
Sbjct: 240 HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 5e-17
Identities = 45/239 (18%), Positives = 80/239 (33%), Gaps = 38/239 (15%)
Query: 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
+ + +G + Y R++ AL L++RA+ N + + LG AL
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRL-----------GEAEKAVSHYKKSSSLANQKDIAK 364
K + P Y + L+ Y L G E+A+S K + + N +
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-NPRY--- 117
Query: 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424
A HL + L + + ++ + P++ + AE L + R EA
Sbjct: 118 APL---HLQRGLVYALLGERDKAEASLKQALAL--EDTPEIRSALAELYLSMGRLDEALA 172
Query: 425 SYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479
Y K+ PK A + G+ E+A + A +
Sbjct: 173 QYAKALEQAPKDLDLRVR--------------YASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 9e-13
Identities = 36/268 (13%), Positives = 70/268 (26%), Gaps = 86/268 (32%)
Query: 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLL 388
RL + + LG + A++ ++++ +A L
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEA------------------LYWL- 45
Query: 389 KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLA 444
A L+L A ++ P++ Y
Sbjct: 46 ---------------------ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL----- 79
Query: 445 GGAY--LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502
AY L G E A+ +DA +++P A RG +
Sbjct: 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---------APLHLQ---RGLV 127
Query: 503 LFKASKYKEACYAYSEGLE----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
+ +A + + L E + A +G+ ++A+ AL P
Sbjct: 128 YALLGERDKAEASLKQALALEDTPEIRS-----ALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 559 SYSKA------------RLEAAIQDYEM 574
+ E A + +
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAAL 210
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 33/107 (30%)
Query: 499 RGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
G L+ +Y A + L+ EA A + KLG A+E+
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALY-----WLARTQLKLGLVNPALENGKTL 65
Query: 554 LIVMPSYSKA-----------------------RLEAAIQDYEMLIR 577
+ P Y LE A+ + R
Sbjct: 66 VARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 7e-17
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 251 ISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310
+ L++ E+L +G Y +++DA ++ ++ A Y A LG
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD-----IAKA 365
+AL +D R A + +LG+ + A S + + +LA + A+A
Sbjct: 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
Query: 366 EALHKHLTKCNE 377
A+ + +T +
Sbjct: 130 GAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-12
Identities = 19/147 (12%), Positives = 41/147 (27%), Gaps = 24/147 (16%)
Query: 468 KTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS 527
T + + E + G ++A K+ +A + + Y++
Sbjct: 5 GTLAMLRGLSEDTLEQLYA------------LGFNQYQAGKWDDAQKIFQALCMLDHYDA 52
Query: 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEML 575
ACR LG YE+A++ + ++ + + L+ A +
Sbjct: 53 RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112
Query: 576 IREIPGNEEVGRALFEAQVQLKKQRGE 602
A L+
Sbjct: 113 RALAAAQPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 8/145 (5%)
Query: 280 ALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339
++ G+ +A + +D R L
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399
LG E+A+ Y + + + + H +C+ L + + + A
Sbjct: 65 LGLYEQALQSYSYGALM--DINEPRF---PFHAAECHLQ--LGDLDGAESGFYSARALAA 117
Query: 400 DSAPQVYALQAEALLRLQRHQEAHD 424
P AL A A L+ D
Sbjct: 118 AQ-PAHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 17/180 (9%), Positives = 39/180 (21%), Gaps = 52/180 (28%)
Query: 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376
+ + L ++ G+ + A ++
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQA------------------------ 43
Query: 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436
L ++ + + L +++A SY+ +
Sbjct: 44 -LCMLDHYD-----------------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85
Query: 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496
F A + ++ G + A A + A AM A
Sbjct: 86 PRFPFHAA----------ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 245 GEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
G++ LD + ++ +G + +E AL Y ++ ++ + +
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPC---YHRAHHRLAML 336
+ + LG A A + + R +
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 5e-16
Identities = 48/311 (15%), Positives = 113/311 (36%), Gaps = 39/311 (12%)
Query: 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE-- 366
E V + + + LA L G+ E A+ +K+ L Q+ +AE
Sbjct: 33 DFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR 92
Query: 367 ---------ALHKHLTKCNEARE-LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416
++ H+ + ++ + + + + ++ + +P++ + L+
Sbjct: 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR---IESPELDCEEGWTRLKC 149
Query: 417 --QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
+++ A + K+ + + GLA +Y L ++A+ + A
Sbjct: 150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD-------NWPPSQNAIDPLRQAI 202
Query: 475 QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRA 534
+++P+N+ + K+ A+ ++R + E E LE + +L + A
Sbjct: 203 RLNPDNQYL----KVLLALKLHKMREEG----EEEGEGEKLVEEALEKAPGVTDVLRSAA 254
Query: 535 ACRSKLGQYEKAVEDCTAALIVMPSYSKAR-------LEAAIQDYEMLIREIPGNEEVGR 587
+ + +KA+E AL +P+ + Q + + G ++
Sbjct: 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314
Query: 588 ALFEAQVQLKK 598
+ A LKK
Sbjct: 315 LIGHAVAHLKK 325
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 39/304 (12%), Positives = 78/304 (25%), Gaps = 51/304 (16%)
Query: 245 GEFPQCISSLNK---LDPEELKFMGNEAY-------NKARFEDALALYDRAIAINSSKAT 294
I L + L+P+ A + L + A+
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354
+ + +A+ K+A+ P H ++ Y +
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308
Query: 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414
+ I A + +A E +V ++ A
Sbjct: 309 KRKLLELIGHA------VAHLKKADEANDNL-----------------FRVCSILASLHA 345
Query: 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
+++EA + K L +L Q+Y + A+ +
Sbjct: 346 LADQYEEAEYYFQKEFSKELTPV-----AKQLLHLRYGNFQLY-QMKCEDKAIHHFIEGV 399
Query: 475 QIDPNNKEVIKGVKMAKAMASARLR------------GNLLFKASKYKEACYAYSEGLEH 522
+I+ ++E K + +A RL L K ++A GLE
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 523 EAYN 526
+
Sbjct: 460 GSLI 463
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 3e-14
Identities = 47/395 (11%), Positives = 100/395 (25%), Gaps = 55/395 (13%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI---------NSSKATYRSNKSAALIGLGRQIEALVE 315
+ + K + E AL +A + N + +GR + +
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116
Query: 316 CKEAIRIDPCYHRAHH-RLAMLYFRLGEA---------EKAVSHYKKSSSLANQKDIAKA 365
+ + + + L G E+A ++K A +K
Sbjct: 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEK----ALEKKPKNP 172
Query: 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425
E + + + I D+ + L A L +++ E
Sbjct: 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-YLKVLLALKLHKMREEGEEEGE 231
Query: 426 YNKSPKFCLEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE-- 482
+ + A G +L A+ Y + A++ + A + PNN
Sbjct: 232 G-------EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 483 -----VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537
+ A + E + A+
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344
Query: 538 SKLGQYEKAVEDCTAALIVMPSYSKA----------------RLEAAIQDYEMLIREIPG 581
+ QYE+A + + AI + ++
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404
Query: 582 NEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFV 616
+ E + + Q K + ++ D + L F+
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 1e-12
Identities = 42/360 (11%), Positives = 104/360 (28%), Gaps = 64/360 (17%)
Query: 248 PQCISSLNKLDPEELKFMGNE--AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG 305
+ S PE G + E A +++A+ + S + A
Sbjct: 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR 184
Query: 306 LGRQ---IEALVECKEAIRIDPCYHRAHHRLAMLYFRL----GEAEKAVSHYKKSSSLAN 358
L A+ ++AIR++P LA+ ++ E + ++ +L
Sbjct: 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE--ALEK 242
Query: 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP-----------QVYA 407
+ + K R + ++ + + + ++A +V+
Sbjct: 243 APGVTDV---LRSAAKF--YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297
Query: 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGG-AYLLIVRAQVYIAAGRFEDA 466
+ + ++ + + + K + + A ++ A ++E+A
Sbjct: 298 VMNLRENGMYGKRKLLELIGH----AVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 467 VKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK-YKEACYAYSEGLEHEAY 525
Q + GN K +A + + EG++
Sbjct: 354 EYYFQKEFSKELTP---------VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404
Query: 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYE 573
+ + +K + L + S+A +++ A +D E
Sbjct: 405 S-------REKEKMKDKLQKIAK---MRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 29/251 (11%), Positives = 67/251 (26%), Gaps = 47/251 (18%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI-- 310
+ L+ K + A+ L +A+ + A Q+
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 311 -----------------EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
A+ K+A + R LA L+ + E+A +++K
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK- 359
Query: 354 SSLANQKDIAKAEALHKHLTKCNEAR-ELKRWNDLLKETQNVISFGADSAPQVYALQA-E 411
K++ HL N ++K + + + S + +
Sbjct: 360 ---EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471
+ +++ + DS E L A + + + A + ++
Sbjct: 417 KIAKMRLSKNGADS---------EALHVL-------------AFLQELNEKMQQADEDSE 454
Query: 472 DAAQIDPNNKE 482
+
Sbjct: 455 RGLESGSLIPS 465
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 6e-16
Identities = 40/286 (13%), Positives = 84/286 (29%), Gaps = 66/286 (23%)
Query: 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341
+ + G +A V ++A+ IDP AH LA+++
Sbjct: 26 PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85
Query: 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401
E + A Y+K+ + ++ A L+ ++G
Sbjct: 86 EPKLADEEYRKALASDSR----NARVLN--------------------------NYGG-- 113
Query: 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY-YTKLFGLAGGAYLLIVRAQVYIAA 460
L +R++EA+ ++ + L +++F G L
Sbjct: 114 ----------FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL---------QM 154
Query: 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAYSEG 519
+ A + + + +++ N S L +LL+K +Y A Y
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQ-------------PSVALEMADLLYKEREYVPARQYYDLF 201
Query: 520 LEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565
+ N+ L + A + P + +
Sbjct: 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 16/218 (7%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+G + E A +A+ I+ S A + + A E ++A+ D
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
R + + E+A ++S + ++ ++L + ++K+
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV---FENLGLV--SLQMKKP 157
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444
+ + + + + A+ L + + + A Y+ + + G
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEM-ADLLYKEREYVPARQYYDL--------FAQGGGQN 208
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482
+ LL +R + + A ++ P + E
Sbjct: 209 ARSLLLGIR--LAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 44/304 (14%), Positives = 84/304 (27%), Gaps = 79/304 (25%)
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354
+ + S+ L+ G + K + A+ +L + Y + G E+A +K
Sbjct: 6 HHHHHSSGLVPRGSHMGDQNPLK-TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRK-- 62
Query: 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414
A E+ SA +A A
Sbjct: 63 -----------------------ALEID----------------PSSA-DAHAALAVVFQ 82
Query: 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
+ A + Y K+ L G +L Q R+E+A + +A+
Sbjct: 83 TEMEPKLADEEYRKALASDSRNARVLNNY--GGFL---YEQ-----KRYEEAYQRLLEAS 132
Query: 475 Q--IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532
Q + P ++ + G + + K +A + + L +
Sbjct: 133 QDTLYPER---------SRVFENL---GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180
Query: 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIP 580
A K +Y A + +++ + A L R P
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240
Query: 581 GNEE 584
G+ E
Sbjct: 241 GSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 7/105 (6%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDP---EELKFMGNEAYNKARFEDALALYDRAIAIN 289
+G + Q + Q K L+ M + Y + + A YD
Sbjct: 147 LGLVSLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334
A + A + R+ P A
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 1e-15
Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 8/171 (4%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
+ L + N + E+A+ LY +A+ + A SN ++ L G+ EAL+ K
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 318 EAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377
EAIRI P + A+ + + + + A+ Y ++ + A A H +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADA-----HSNLASI 120
Query: 378 ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
++ + + + + D Y A L + + + K
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDFP-DAYCNLAHCLQIVCDWTDYDERMKK 170
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 2e-15
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 22/203 (10%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
+ NI ++ G + + K + PE + + + + ++AL Y AI I+
Sbjct: 15 LANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349
+ A SN L + AL AI+I+P + AH LA ++ G +A++
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 133
Query: 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409
Y+ +L + D A + + + + W D + + ++S AD Q
Sbjct: 134 YRT--ALKLKPDFPDA-----YCNLAHCLQIVCDWTDYDERMKKLVSIVAD--------Q 178
Query: 410 AEALLRLQRHQEAHDSYNKSPKF 432
E H Y S F
Sbjct: 179 LEKNRLPSVHPHHSMLYPLSHGF 201
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 1e-11
Identities = 36/278 (12%), Positives = 77/278 (27%), Gaps = 66/278 (23%)
Query: 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK 382
P + + + LA + G E+AV Y+K+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKA----------------------------- 35
Query: 383 RWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG 442
+ + A L A L + + QEA Y ++ + +
Sbjct: 36 ------------LEVFPEFAAAHSNL-ASVLQQQGKLQEALMHYKEAIRISPTF------ 76
Query: 443 LAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502
A + A++ A QI+P + ++
Sbjct: 77 ----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH------------SNLASI 120
Query: 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562
+ EA +Y L+ + CN A C + + E + ++ +
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180
Query: 563 ARLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
++ + ++ P + +A+ E L +
Sbjct: 181 KNRLPSVHPHHSML--YPLSHGFRKAIAERHGNLCLDK 216
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 8e-09
Identities = 33/219 (15%), Positives = 59/219 (26%), Gaps = 45/219 (20%)
Query: 398 GADSAP---QVYALQAEALLRLQRHQEAHDSYNK----SPKFCLEYYTKLFGLAGGAYLL 450
G S P A +EA Y K P+F +
Sbjct: 1 GPGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN------------ 48
Query: 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYK 510
A V G+ ++A+ ++A +I P + GN L + +
Sbjct: 49 --LASVLQQQGKLQEALMHYKEAIRISPTFADAYSN------------MGNTLKEMQDVQ 94
Query: 511 EACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------- 563
A Y+ ++ + N A+ G +A+ AL + P + A
Sbjct: 95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 564 -----RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLK 597
+ + L+ + E R
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSM 193
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 23/196 (11%), Positives = 49/196 (25%), Gaps = 13/196 (6%)
Query: 253 SLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA 312
+N + + + + +A+A Y A+ + N + L + +
Sbjct: 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164
Query: 313 LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
K+ + I + ++ S +K IA+
Sbjct: 165 DERMKKLVSIVADQLEKNRLPSVHPHHSMLYP---------LSHGFRKAIAERHGNLCLD 215
Query: 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQ----VYALQAEALLRLQRHQEAHDSYNK 428
+ LK + + G S+ L + Y
Sbjct: 216 KINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYAL 275
Query: 429 SPKFCLEYYTKLFGLA 444
SP + K+ A
Sbjct: 276 SPDDGTNFRVKVMAEA 291
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 4e-15
Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 35/260 (13%)
Query: 306 LGRQIEALVECKEAIRIDPCYHRAHHRL-AMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364
+G + + E + P Y + + K SS+ Q
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMF 71
Query: 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424
AE L H + EL R + N + A Q A
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTN---------TTFLLMAASIYFYDQNPDAAL- 121
Query: 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484
+ + + Q+ + R + A K + D +
Sbjct: 122 --------------RTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT- 166
Query: 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544
++A A +L K ++A Y + E + + +LL +AAC G++E
Sbjct: 167 ---QLATAWV------SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217
Query: 545 KAVEDCTAALIVMPSYSKAR 564
A AL + +
Sbjct: 218 AAEGVLQEALDKDSGHPETL 237
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 6e-13
Identities = 36/287 (12%), Positives = 79/287 (27%), Gaps = 35/287 (12%)
Query: 269 AYNKARFEDALALYDRAIAINSSKATYRSN-KSAALIGLGRQIEALVECKEAIRIDPCYH 327
A+ ++ + R + + R A + + L E K + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPE---L 65
Query: 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDL 387
+A A + V+ + ++ D+ L L + + +
Sbjct: 66 QAVRMFAEYLASHSRRDAIVAELDRE--MSRSVDVTNTTFL---LMAASIYFYDQNPDAA 120
Query: 388 LKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGA 447
L+ S + A+ + LL+L R A K + A
Sbjct: 121 LRTLHQGDS------LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA--- 171
Query: 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS 507
+ + +DA Q+ A ++ G +
Sbjct: 172 -----WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG------------QAACHMAQG 214
Query: 508 KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+++ A E L+ ++ + L N LG+ + + L
Sbjct: 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 1e-11
Identities = 49/316 (15%), Positives = 90/316 (28%), Gaps = 44/316 (13%)
Query: 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKAT----YRSNKS 300
G + QCI+ ++ P + R A Y + + +
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFA 72
Query: 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRL--AMLYFRLGEAEKAVSHYKKSSSLAN 358
L R+ + E + L A +YF + A+ + SL
Sbjct: 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLEC 132
Query: 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP-QVYALQAEALLRLQ 417
+ L K L R + KE + + D+ Q+ +
Sbjct: 133 M--AMTVQILLK----------LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477
+ Q+A+ + + C LL +A ++A GR+E A Q+A D
Sbjct: 181 KLQDAYYIFQEMADKCSPT----------LLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230
Query: 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537
+ E + L K E Y L+ + + A
Sbjct: 231 SGHPETLIN------------LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA-- 276
Query: 538 SKLGQYEKAVEDCTAA 553
K +++ V +
Sbjct: 277 -KENDFDRLVLQYAPS 291
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 6e-15
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 8/145 (5%)
Query: 245 GEFPQCISSLNKL------DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
G ++ L E+L + Y +EDA ++ ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 299 KSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358
A +G+ A+ +D R A + GE +A S + L
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI- 119
Query: 359 QKDIAKAEALHKHLTKCNEARELKR 383
+ + L ++ EA +LK+
Sbjct: 120 -ANXPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 8e-12
Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 24/150 (16%)
Query: 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520
G T +I + E + +++ Y++A +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYS------------LAFNQYQSGXYEDAHXVFQALC 48
Query: 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAA 568
+ Y+S ACR +GQY+ A+ + ++ + L A
Sbjct: 49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108
Query: 569 IQDYEMLIREIPGNEEVGRALFEAQVQLKK 598
+ I E L+
Sbjct: 109 ESGLFLAQELIANXPEFXELSTRVSSMLEA 138
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 9e-15
Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 16/198 (8%)
Query: 244 SGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAINSSKATYRS 297
+ + P+ + L P++ + + R +A++ +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
R EA V ++A P + L G+AE A + Y ++ L
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 358 NQKDIAKAEALHKHLTKCN----EARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413
++ A+ L+ C+ + + + + V F + A A
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF------AFLSEDASAA 175
Query: 414 LRLQRHQEAHDSYNKSPK 431
+L + + S +
Sbjct: 176 EQLACARTRAQAIAASVR 193
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 19/166 (11%), Positives = 40/166 (24%), Gaps = 24/166 (14%)
Query: 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519
+ + A + P + + + A G
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVA------------WLMLADAELGMGDTTAGEMAVQRG 49
Query: 520 LEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEA 567
L + + R ++ +A A P + + EA
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
Query: 568 AIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDVKDMKFGSNL 613
A Y + +P + L + +L R DV + + +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 22/161 (13%)
Query: 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR 462
+ + A+A L + + + + + +V R
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----------PEAVARLGRVRWTQQR 72
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522
+A Q A+ P + + A G+ L A + + A AY+ +
Sbjct: 73 HAEAAVLLQQASDAAPEHPGI------------ALWLGHALEDAGQAEAAAAAYTRAHQL 120
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563
+ R +L + + A
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 27/216 (12%), Positives = 64/216 (29%), Gaps = 19/216 (8%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+ E + A A + A+ + ++ L +A ++A+ I P
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Query: 325 CYHRAHHRL-AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR 383
++ L RL ++++++ K+ + A +L K + + +
Sbjct: 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA-----NLNKGICSAKQGQ 128
Query: 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443
+ + ++ P L A + + +A + K L
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKEL-ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187
Query: 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479
+ A +A + AQ+ N
Sbjct: 188 G------------WKIAKALGNAQAAYEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 20/168 (11%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKFMGNEAYN---------KARFEDALALYD 283
I + + S + + P+ E N R +++A +D
Sbjct: 48 RAEIYQY-LKVNDKAQESFRQALSIKPDSA-----EINNNYGWFLCGRLNRPAESMAYFD 101
Query: 284 RAIA--INSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341
+A+A + NK G+ A K ++ P + A LA G
Sbjct: 102 KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161
Query: 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK 389
+ A ++KK S K A+ + L+
Sbjct: 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 43/204 (21%)
Query: 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
+ ++ + + +A ++A++ DP A A +Y L +KA +++
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 353 SSSLANQKDIA---KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409
+ S+ L L + E+ F A Y
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMA---------------YFDKALADPTYPTP 112
Query: 410 AEA-------LLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458
A + + A +S P+F + A+ +
Sbjct: 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE--------------LARTKM 158
Query: 459 AAGRFEDAVKTAQDAAQIDPNNKE 482
AG+ DA + +
Sbjct: 159 LAGQLGDADYYFKKYQSRVEVLQA 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 49/208 (23%)
Query: 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVY 457
A+ + A +R Q +++A S + K + A+L VRA++Y
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE--------LAWL--VRAEIY 52
Query: 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLF-KASKYKEACYA 515
+ A ++ + A I P++ A G L + ++ E+
Sbjct: 53 QYLKVNDKAQESFRQALSIKPDS-------------AEINNNYGWFLCGRLNRPAESMAY 99
Query: 516 YSEGLE-------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA----- 563
+ + L + A N+ C +K GQ+ A +L P + A
Sbjct: 100 FDKALADPTYPTPYIANL-----NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154
Query: 564 -------RLEAAIQDYEMLIREIPGNEE 584
+L A ++ + +
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQA 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-08
Identities = 28/248 (11%), Positives = 60/248 (24%), Gaps = 61/248 (24%)
Query: 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDL 387
+LAM Y R + +A + + +
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDA---------------------------------- 34
Query: 388 LKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGA 447
+ + + ++AE L+ + +A +S+ ++ + G
Sbjct: 35 -------LKSDPKNE-LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY--GW 84
Query: 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS 507
+L R +++ A DP A + +G K
Sbjct: 85 FL-------CGRLNRPAESMAYFDKALA-DPTYPTP------YIANLN---KGICSAKQG 127
Query: 508 KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEA 567
++ A L + A + GQ A + L
Sbjct: 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187
Query: 568 AIQDYEML 575
+ + L
Sbjct: 188 GWKIAKAL 195
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 31/105 (29%), Positives = 49/105 (46%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EELK N+ + +E+A+ Y +AI +N S A Y N+S A + AL + A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364
I +D Y + ++R A LG+ A+ Y+ + AK
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ + N FKA Y+ A YS+ +E N++ NR+ + Y A+ D T A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 557 MPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGED 603
Y K + AA++DYE +++ P +++ E +K++ E
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.3 bits (171), Expect = 3e-14
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF------MGNEAYNKARFEDALALYDRAI 286
+GN + G++ + I K LDP + +GN Y + +++A+ Y +A+
Sbjct: 7 LGNAYYK-QGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA 346
++ A N A G EA+ ++A+ +DP A + L Y++ G+ ++A
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 347 VSHYKKSSSL 356
+ +Y+K+ L
Sbjct: 123 IEYYQKALEL 132
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 53.5 bits (130), Expect = 9e-09
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 34/139 (24%)
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
Y G +++A++ Q A ++DP + A+A + GN +K Y EA
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRS---------AEAWYN---LGNAYYKQGDYDEAIEY 57
Query: 516 YSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------- 563
Y + LE EA+ N K G Y++A+E AL + P ++A
Sbjct: 58 YQKALELDPRSAEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Query: 564 -----RLEAAIQDYEMLIR 577
+ AI+ Y+ +
Sbjct: 113 YYKQGDYDEAIEYYQKALE 131
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 49.3 bits (119), Expect = 3e-07
Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 60/188 (31%)
Query: 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
N A G EA+ ++A+ +DP A + L Y++ G+ ++A+ +Y+K+ L
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416
A+A W +L A +
Sbjct: 65 --DPRSAEA------------------WYNL----------------------GNAYYKQ 82
Query: 417 QRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQD 472
+ EA + Y K+ P+ +Y Y G +++A++ Q
Sbjct: 83 GDYDEAIEYYQKALELDPRSAEAWYN--------------LGNAYYKQGDYDEAIEYYQK 128
Query: 473 AAQIDPNN 480
A ++DP +
Sbjct: 129 ALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 3e-07
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAIN 289
+GN + G++ + I K LDP + +GN Y + +++A+ Y +A+ ++
Sbjct: 41 LGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
A N A G EA+ ++A+ +DP
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.5 bits (117), Expect = 4e-07
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 499 RGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
GN +K Y EA Y + LE EA+ N K G Y++A+E A
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY-----NLGNAYYKQGDYDEAIEYYQKA 61
Query: 554 LIVMPSYSKA------------RLEAAIQDYE 573
L + P ++A + AI+ Y+
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 5e-07
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 40/156 (25%)
Query: 412 ALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467
A + + EA + Y K+ P+ +Y G A Y G +++A+
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNL--GNA------------YYKQGDYDEAI 55
Query: 468 KTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-----H 522
+ Q A ++DP + A+A + GN +K Y EA Y + LE
Sbjct: 56 EYYQKALELDPRS---------AEAWYN---LGNAYYKQGDYDEAIEYYQKALELDPRSA 103
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
EA+ N K G Y++A+E AL + P
Sbjct: 104 EAWY-----NLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 4e-14
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
+ +PEE G Y+ + +++ L+++AI ++ ++ Y K AL L R EA+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 314 VECKEAIRI--DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
I + D A + E + + L
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 1e-09
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF---MGNEAYNKARFEDALALYDRAIAI- 288
G + +G + + I K LDPEE K+ G YN R+E+A+ Y+ I +
Sbjct: 12 EGVLQYD-AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70
Query: 289 -NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327
+ + K+ AL + + + +++ +H
Sbjct: 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-08
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 24/94 (25%)
Query: 499 RGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
G L + A Y E+ + + ++ + + + L +YE+AV+
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWL-----MKGKALYNLERYEEAVDCYNYV 66
Query: 554 LIVMPSYSKA--------------RLEAAIQDYE 573
+ V+ E + E
Sbjct: 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 6e-08
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 24/115 (20%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+ AG + +++ + A Q+DP + +G L+ +Y+EA
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLM------------KGKALYNLERYEEA 59
Query: 513 CYAYSEGLE-------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560
Y+ + + + +A + E E A + +
Sbjct: 60 VDCYNYVINVIEDEYNKDVWA-----AKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQ 570
E Y + G Y ++++ A+ + P SK R E A+
Sbjct: 7 EEYY-----LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 571 DYEMLIREIPGNEEVGRA 588
Y +I + +E
Sbjct: 62 CYNYVI-NVIEDEYNKDV 78
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 67.8 bits (167), Expect = 7e-14
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+GN Y + +++A+ Y +A+ ++ + A N A G EA+ ++A+ +DP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
A + L Y++ G+ ++A+ +Y+K
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 60.1 bits (147), Expect = 4e-11
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 236 MGNIVKQPSGEFPQCISSLNK---LDPEELKF------MGNEAYNKARFEDALALYDRAI 286
+GN + G++ + I K LDP +GN Y + +++A+ Y +A+
Sbjct: 15 LGNAYYK-QGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341
++ + A N A G EA+ ++A+ +DP A L + G
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 3e-07
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 22/92 (23%)
Query: 499 RGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
GN +K Y EA Y + LE EA+ N K G Y++A+E A
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY-----NLGNAYYKQGDYDEAIEYYQKA 69
Query: 554 LIVMPSYSKA------------RLEAAIQDYE 573
L + P+ ++A + AI+ Y+
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 47.0 bits (113), Expect = 1e-06
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
N A G EA+ ++A+ +DP A + L Y++ G+ ++A+ +Y+K+ L
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 46.6 bits (112), Expect = 2e-06
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAYSEG 519
G +++A++ Q A ++DPNN A A GN +K Y EA Y +
Sbjct: 23 GDYDEAIEYYQKALELDPNN-------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 520 LE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563
LE EA+ N K G Y++A+E AL + P+ ++A
Sbjct: 70 LELDPNNAEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 7e-14
Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 29/133 (21%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEH-----------------EAYNSVLLCNRAACRSK 539
++ GN LFK K +EA Y + + A + N AAC K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK 242
Query: 540 LGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGR 587
L +Y++A+ C L KA ++++A D+ + P ++ + R
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302
Query: 588 ALFEAQVQLKKQR 600
L Q K
Sbjct: 303 ELRALAEQEKALY 315
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIA-----------------INSSKATYRSNKSAA 302
+ K GN + + + E+A+ Y+ AIA + K N +A
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 303 LIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKD 361
LI L R EA+ C + + +A R LG+ + A ++K+ A + K
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299
Query: 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQN 393
I + K ++ + + + K
Sbjct: 300 IRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-13
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Query: 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335
+ + +A + R + AL + A+ DP Y A L
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 336 LYFRLGEAEKAVSHYKKSSSLA-NQKDIAKAEALHKHLTKCNEARELK 382
G+ A ++ + A ++ D + L L + L+
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-08
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 251 ISSLNKL------DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALI 304
L + + +G +F+ AL A+ + + + L
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 305 GLGRQIEALVECKEAIRIDPCYH--RAHHRLAMLYFRLGEAEKAVSHY 350
G G + A + + + L + RL + H+
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-06
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 13/103 (12%)
Query: 510 KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------ 563
+ L N +L ++ Q++ A+ AAL P+YS A
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 564 ------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
A Q +E + + + + E QV L++
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQ-QVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 12/108 (11%), Positives = 26/108 (24%), Gaps = 14/108 (12%)
Query: 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAYSEGLEH 522
+ + + +N R G + ++ A L+
Sbjct: 2 QAITERLEAMLAQGTDN-------------MLLRFTLGKTYAEHEQFDAALPHLRAALDF 48
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQ 570
+ SV G A + + L S ++ +Q
Sbjct: 49 DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQ 96
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 9e-04
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 13/91 (14%)
Query: 434 LEYYTKLFGLA-GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
E + L + Y +F+ A+ + A DP +
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-----------S 53
Query: 493 MASARLRGNLLFKASKYKEACYAYSEGLEHE 523
+A L G L A A+ GL
Sbjct: 54 VAWKWL-GKTLQGQGDRAGARQAWESGLAAA 83
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-13
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 611 SNLVFVSSNERFRHFVTSPGMAVVL--F-------CSKAEHKQVLQLMEQVCKRFPSVNF 661
+ + V S +F + ++++ F C Q+ ++M ++ K P V+F
Sbjct: 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQC-----AQMNEVMAELAKELPQVSF 66
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
+K+E E P +++ +SS+P F +KN ++ + G L K V+ ++S
Sbjct: 67 VKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 118
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 601 GEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVC 653
G +++ +++ FR+ + V+ F C K + + ++
Sbjct: 2 GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPC-----KMMQPHLTKLI 56
Query: 654 KRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
+ +P V F+K +V++ P IAK V+++P F + K+G + +I G LEK +K
Sbjct: 57 QAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 112
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 4e-13
Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 595 QLKKQRGEDVKDMKF-GSNLVFVSSNERFRHFVTSPGMA----VVLF-------CSKAEH 642
+ +D ++ G N+ +++ ER+ ++ + F
Sbjct: 7 KRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPS----- 61
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCE 702
+Q+ ++ + +PS+ FL ++V++ + S + + P F ++G +V ++ G
Sbjct: 62 RQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKP 121
Query: 703 LLEKSVKLYSS 713
L K +
Sbjct: 122 ELHKKITAILD 132
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 616 VSSNERFRHFVTSPG--MAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEV 666
V S+ F+ ++ G +AVV F C ++ + ++P FL+V+V
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPC-----LRIAPAFSSMSNKYPQAVFLEVDV 60
Query: 667 EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
A + +S+ P F+ ++N R+ + G LE+ +K +
Sbjct: 61 HQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-13
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
G A +K ++ AL + S+ + N L EA +I D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQD-PHSRICF--NIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
A+ + MLY++ + + A+ K+ A R
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKE-------------------------ALIQLRG 103
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
N L+ + F + +V A + + ++A +
Sbjct: 104 NQLIDYKILGLQFKLFAC-EVLYNIAFMYAKKEEWKKAEEQLAL 146
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 49/197 (24%)
Query: 409 QAEALLRLQRHQEAHDSYNK-SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467
+ + + A D+++ + +Y +A
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFN--------------IGCMYTILKNMTEAE 57
Query: 468 KTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAYSE-------- 518
K + D + A A RG L ++ KY A E
Sbjct: 58 KAFTRSINRDKHL-------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104
Query: 519 --------GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQ 570
GL+ + + +L N A +K +++KA E A + ++++ A++
Sbjct: 105 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164
Query: 571 DYEMLI----REIPGNE 583
IP
Sbjct: 165 CVWKQKLYEPVVIPVGR 181
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 17/157 (10%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 245 GEFPQCISSLNKLDPEELKF---MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA 301
++ + + + + + +G +A + R+I + A +
Sbjct: 20 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79
Query: 302 ALIGLGRQIEALVECKEAIRIDP----------------CYHRAHHRLAMLYFRLGEAEK 345
+ A+ + KEA+ + +A +Y + E +K
Sbjct: 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139
Query: 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK 382
A ++S+ ++ +K + K + + + +
Sbjct: 140 AEEQLALATSMKSEPRHSK---IDKAMECVWKQKLYE 173
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 21/199 (10%), Positives = 53/199 (26%), Gaps = 54/199 (27%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+ ++ A+ + + + ++ + G + EA
Sbjct: 12 EGVLAADKKDWKGALD---AFSAVQDPH---------SRICFN---IGCMYTILKNMTEA 56
Query: 513 CYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS------------- 559
A++ + + + +V R + +Y+ A++D ALI +
Sbjct: 57 EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116
Query: 560 ---------------YSKARLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV 604
K + A + + + +A + KQ+ +
Sbjct: 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS--KIDKAMECVWKQKLYEP 174
Query: 605 KDMKFGSNLVFVSSNERFR 623
V + FR
Sbjct: 175 ---------VVIPVGRLFR 184
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-13
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 616 VSSNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVED 668
V+S F ++ + +V F C K++ E+ K + + F+KV+V++
Sbjct: 13 VTSQAEFDSIISQNELVIVDFFAEWCGPC-----KRIAPFYEECSKTYTKMVFIKVDVDE 67
Query: 669 HPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
+ + E ++S+P FK+YKNGS V + G L++ ++ Y++
Sbjct: 68 VSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 6e-13
Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 29/191 (15%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAIN----------------SSKATYRSNKSA 301
+E+ + A + A++ + + IA+N + + +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 302 ALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361
A +A + KE ++ P A + G+ + A+ Y+K L
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 362 IA---KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418
A + + + L+ +S + L R
Sbjct: 123 AANIFLGNYYYLTAEQEKKK---------LETDYKKLSSPTKMQ-YARYRDGLSKLFTTR 172
Query: 419 HQEAHDSYNKS 429
+++A +S K
Sbjct: 173 YEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-12
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 32/209 (15%)
Query: 409 QAEALLRLQRHQEAHDSYNK----SPKFCLEYYTKLFGLAGG--AYLLIVRAQVYIAAGR 462
+ A + ++ +A + + + YY + L A Y
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522
++ A ++ Q PNN + ++ + + K+A Y + L+
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEA------------CAEMQVCRGQEKDALRMYEKILQL 117
Query: 523 EAYNSVLLCNRA-ACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAI 569
EA N Q +K +E L A R E A
Sbjct: 118 EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR 177
Query: 570 QDYEMLIREIPGNEEVGRALFEAQVQLKK 598
+ +I P + E + L + K+
Sbjct: 178 NSLQKVILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 4e-12
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 17/152 (11%)
Query: 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA----RLRGNLLFK 505
++ + I AG+ AV + ++ + E+ + K + K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-- 563
Y +A Y E L+ N L A + GQ + A+ L + A
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126
Query: 564 -----------RLEAAIQDYEMLIREIPGNEE 584
+ + ++ + +
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 4e-12
Identities = 34/250 (13%), Positives = 71/250 (28%), Gaps = 57/250 (22%)
Query: 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLL 388
+ G+ +AVS++++ +I + E + N K +L
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQ----TIALNIDRTEMYYWTNVDKNSEISSKLATEL- 60
Query: 389 KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS----PKFCLEYYTKLFGLA 444
A A + + + +A+ Y + P
Sbjct: 61 ---------------------ALAYKKNRNYDKAYLFYKELLQKAPNN------------ 87
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504
L A++ + G+ +DA++ + Q++ +N GN +
Sbjct: 88 --VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF------------LGNYYY 133
Query: 505 -KASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563
A + K+ + L + +YEKA ++ PS
Sbjct: 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193
Query: 564 RLEAAIQDYE 573
+ I E
Sbjct: 194 KTLDKILRIE 203
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 4e-12
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 245 GEFPQCISSLNKL------DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN 298
+ + +L + + L+ + + +DAL +Y++ + + +
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 299 KSAALIGLGRQIEALVEC-KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
Q + +E + + A +R + EKA + +K
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 13/111 (11%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 247 FPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL 306
+ + +++ + + ++ A Y + + + +
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 307 GRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE-KAVSHYKKSSSL 356
G++ +AL ++ ++++ A+ L Y+ E E K + K S
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 7e-13
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 617 SSNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH 669
+ E F S + VV F C K + + ++ K+FP+V FLKV+V++
Sbjct: 14 TWKEHFEKGKGSQKLIVVDFTASWCPPC-----KMIAPIFAELAKKFPNVTFLKVDVDEL 68
Query: 670 PYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
+A+ V ++P F K+G V + G + L V +++
Sbjct: 69 KAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 610 GSNLVFVSSNERFRHFV----TSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPS 658
+ ++ V S E++ + T+ + V+ F C + + + + K+FP+
Sbjct: 11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPC-----RIMAPVFADLAKKFPN 65
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
FLKV+V++ IA+ V ++P F K G + G E L V L+++
Sbjct: 66 AVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAA 120
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 611 SNLVFVSSNERFRHFVTSPG--MAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNF 661
++ + S F+ + + G + VV F K + + +++ +V F
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPS-----KMIKPFFHSLSEKYSNVIF 65
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
L+V+V+D +A V S+P F+ +K G +V E G E LE ++
Sbjct: 66 LEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 113
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-12
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 616 VSSNERFRHFVTSPG--MAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEV 666
+ S F+ + + G + VV F C K + + +++ +V FL+V+V
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPC-----KMIKPFFHSLSEKYSNVIFLEVDV 59
Query: 667 EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
+D +A V S+P F+ +K G +V E G E LE ++
Sbjct: 60 DDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-12
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 612 NLVFVSSNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKV 664
++V V S E+FR+ ++ + V F C K + + ME++ FP+V F KV
Sbjct: 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPC-----KTIERPMEKIAYEFPTVKFAKV 74
Query: 665 EVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
+ +++ I V +P F I ++G + + G +L + ++
Sbjct: 75 DADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLR 119
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 5e-12
Identities = 20/104 (19%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 616 VSSNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVED 668
+ F + + VV F C K + ++E+ +++P +F K++V++
Sbjct: 11 FKTASEFDSAIAQDKLVVVDFYATWCGPC-----KMIAPMIEKFSEQYPQADFYKLDVDE 65
Query: 669 HPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYS 712
+A+ VS++P ++KNG V ++ G +++++ +
Sbjct: 66 LGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 109
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-12
Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 28/168 (16%)
Query: 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520
G F + + ++ K+ + GN FK+ ++ A Y++ L
Sbjct: 191 GIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVL 250
Query: 521 ----------------EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA- 563
+ + + N AC+ K+ ++ AV+ C AL + PS +KA
Sbjct: 251 RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 564 -----------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
+ A+ D + P ++ + L + + ++K Q+
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAI----------------AINSSKATYRSNKSAAL 303
E+LK +GN + +E A+ Y + + + + N A
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDI 362
+ + A+ C EA+ IDP +A +R A + L E ++A++ KK+ +A K I
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343
Query: 363 AKAEALHKHLTKCNEARELKRW 384
K K + +E +
Sbjct: 344 QAELLKVKQKIKAQKDKEKAAY 365
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-12
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 616 VSSNERFRHFVTSPGMAVVL--F-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEV 666
+++ + +++ F C + + +E + K P V F KV+V
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPC-----RNIAPKVEALAKEIPEVEFAKVDV 58
Query: 667 EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
+ + A V+++P F K+G V G L +++ +
Sbjct: 59 DQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRH 103
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 7e-12
Identities = 13/96 (13%), Positives = 28/96 (29%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVEC 316
+ E G A +A ++ + + + A++
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
A +DP H LA+ + A A++ +
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 12/109 (11%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+ +A + Q +P +A R G + K A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPER---------EEAW---RSLGLTQAENEKDGLA 70
Query: 513 CYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561
A + + + + A + A+ A L+ P Y
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
+ +++ L EA + + + +P A L + + A+ A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH----A 77
Query: 358 NQKDIAKAEAL------HKHLTKCNEARE-LKRW 384
D H + N A L+ W
Sbjct: 78 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 6/90 (6%)
Query: 244 SGEFPQCISSLNK---LDPEE---LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS 297
+ + +PE + +G + A+ + A ++ +
Sbjct: 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYH 327
+ + AL + + P Y
Sbjct: 90 ALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 611 SNLVFVSSNERFRHFV----TSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSV 659
++ + E + + S + VV F C + + + K+ P+V
Sbjct: 16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPC-----RFIAPFFADLAKKLPNV 70
Query: 660 NFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
FLKV+ ++ +A + ++P F K G + ++ G + + L+ ++ + +
Sbjct: 71 LFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 274 RFEDALALYDRAIAINSSKATYR---SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330
A+ Y++AIA + LG +A ++ P +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 331 HRLAMLYFRLGEAEKAVSHYKKS 353
AM+ + LG E+ V K
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKI 87
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-RGNLLFKASKYKEACYAYSEG 519
G AV + A K++ A L G+ +Y++A + G
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDL----------AECYLGLGSTFRTLGEYRKAEAVLANG 53
Query: 520 LEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK-ARLEAAIQDYE 573
++ + L A LG+YE+ VE + + AI Y
Sbjct: 54 VKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 7e-06
Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 11/89 (12%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+G+ + A A+ + + R + L LGR + + + I
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
+ ++A+ Y
Sbjct: 93 DDE-----------TIQSYKQAILFYADK 110
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 616 VSSNERFRHFVTSPGMAVVLFCSKAEH----KQVLQLMEQVCKRFPSVNFLKVEVEDHPY 671
+ E ++ + ++ K E+ +L+ + V + + V +++ ++D
Sbjct: 5 FKTIEELATYIEEQQLVLLFI--KTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQE 62
Query: 672 IAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712
IA V + P ++ NG + E LE++++L+
Sbjct: 63 IAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 611 SNLVFVSSNERFRHFVTSPGMA----VVLF-------CSKAEHKQVLQLMEQVCKRFPSV 659
++ + + F + + ++ F C + + + + K+FP
Sbjct: 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPC-----RVIAPVFAEYAKKFPGA 60
Query: 660 NFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
FLKV+V++ +A++ V ++P F K+G +V + G + + + +
Sbjct: 61 IFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMG 114
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 4e-11
Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 27/150 (18%)
Query: 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH--------------- 522
+ + + A + +G + FK KY +A Y + +
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQ 570
E++ N A C KL +Y KAVE C AL + + K E+A
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 571 DYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
D+E ++ P N+ + Q + K+
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHN 402
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 266 GNEAYNKARFEDALALYDRAI---------------AINSSKATYRSNKSAALIGLGRQI 310
G + ++ A+ Y + + A S N + + L
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Query: 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDIAKAEALH 369
+A+ C +A+ +D + +R + E E A ++K + K ++
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394
Query: 370 KHLTKCNEARELKRW 384
+ K + R+ + +
Sbjct: 395 QKKAKEHNERDRRIY 409
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 459 AAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL---LFKASKYKEACYA 515
A ++ V + + + + +A NL K +Y +A
Sbjct: 287 AVIQYGKIVSWLEMEYGLSEKESKASESFLLA-------AFLNLAMCYLKLREYTKAVEC 339
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAI 569
+ L ++ N L R + + ++E A D L V P ARL+ ++
Sbjct: 340 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-11
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 650 EQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
+ K+FP FLKV+V++ +A+ V ++P F K+G+ ++ G + + L+ ++
Sbjct: 59 AEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIV 118
Query: 710 LYSS 713
+
Sbjct: 119 KHVG 122
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 7e-11
Identities = 17/142 (11%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 563 ARLEAAIQDYEMLIREIPGNEEVGRALFEAQVQ-LKKQRGEDVKDMKFGSNLVFVSSNER 621
++ + + I ++E L + + Q ++ + ++G + + S E+
Sbjct: 64 SKERFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGF-VYELESGEQ 122
Query: 622 FRHFVT--SPGMAVVLFCSKAEH---KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE 676
F + +V+ + + + + +P V F K++ + +
Sbjct: 123 FLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRF- 181
Query: 677 GVSSIPAFKIYKNGSRVKEIPG 698
+P +YK G +
Sbjct: 182 SSDVLPTLLVYKGGELLSNFIS 203
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 2e-10
Identities = 16/153 (10%), Positives = 45/153 (29%), Gaps = 9/153 (5%)
Query: 553 ALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRALFEA--QVQLKKQRGEDVKDMKFG 610
K E + + E+ ++ + ++ + ++G
Sbjct: 40 MSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYG 99
Query: 611 SNLVFVSSNERFRHFVT--SPGMAVVLFCSKAEH---KQVLQLMEQVCKRFPSVNFLKVE 665
+ + + E+F + +V+ + + +E + +P V F K+
Sbjct: 100 F-VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIR 158
Query: 666 VEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ + +P +YK G +
Sbjct: 159 ASNTGAGDRF-SSDVLPTLLVYKGGELISNFIS 190
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 54/341 (15%), Positives = 96/341 (28%), Gaps = 67/341 (19%)
Query: 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAI 320
EL G N +A + AI SA LG L + +A+
Sbjct: 50 ELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 321 RIDPCYHRA----------------HHRLAMLYFRLGEAEKAVSHYKKS----SSLANQK 360
+ + L +G ++A ++ L ++
Sbjct: 107 Q---YHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163
Query: 361 DIAKA--------EALHKHLTKCNEARELKRWNDLLKETQN--------VISFGADSAPQ 404
+A A KHL + N + + L + G D Q
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-DRGAQ 222
Query: 405 VYALQ--AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR 462
A L Q A + + + L + A +I G+
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQER----LRIAREFGDRAAERRANSNLGNSHIFLGQ 278
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE- 521
FEDA + + + E+ G + +A + L GN ++ A ++ L
Sbjct: 279 FEDAAEHYKRTLAL---AVEL--GEREVEAQSCYSL-GNTYTLLHEFNTAIEYHNRHLAI 332
Query: 522 --------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
EA + S +G +E+A++ L
Sbjct: 333 AQELGDRIGEAR---ACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 48/317 (15%), Positives = 98/317 (30%), Gaps = 49/317 (15%)
Query: 270 YNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323
+D SS + + L G + + AI+
Sbjct: 19 LGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78
Query: 324 PCYHR----AHHRLAMLYFRLGEAEKAVSHYKKS----SSLANQKDIAKAE----ALHKH 371
R + +L YF LG+ KA+ ++K S+ ++ AK+ K
Sbjct: 79 TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138
Query: 372 LTKCNEAREL-KRWNDLLKETQNVISFGADS-------------APQVYALQAEALLRLQ 417
+ + +EA +R L ++ + +S + +
Sbjct: 139 MGRFDEAAICCERHLTLARQLGDRLSE-GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197
Query: 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477
A + Y ++ L+ L Y G F+ A++ Q+ +I
Sbjct: 198 ALTRAVEFYQEN----LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI- 252
Query: 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE------HEAYNSVLLC 531
+E G + A+ A++ L GN ++++A Y L +
Sbjct: 253 --AREF--GDRAAERRANSNL-GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307
Query: 532 NRAACRSKLGQYEKAVE 548
+ + L ++ A+E
Sbjct: 308 SLGNTYTLLHEFNTAIE 324
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 41/252 (16%), Positives = 74/252 (29%), Gaps = 51/252 (20%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+GN RF++A +R + + S+ N G+ + K
Sbjct: 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191
Query: 319 AIRIDPCYHRA-----------------------HHRLAMLYFRLGEAEKAVSHYKKS-- 353
+ RA L Y+ LG+ + A+ H+++
Sbjct: 192 GDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251
Query: 354 --SSLANQKDIAKAE----ALHKHLTKCNEAREL-KRWNDLLKETQNVISFGADSAPQVY 406
++ +A H L + +A E KR L E + +
Sbjct: 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG-------EREVEAQ 304
Query: 407 ALQ--AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFE 464
+ L A + +N+ L +L G A + A G E
Sbjct: 305 SCYSLGNTYTLLHEFNTAIEYHNRH----LAIAQELGDRIGEARACWSLGNAHSAIGGHE 360
Query: 465 DAVKTAQDAAQI 476
A+K A+ Q+
Sbjct: 361 RALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 41/302 (13%), Positives = 80/302 (26%), Gaps = 49/302 (16%)
Query: 288 INSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHRAHHRLAMLYFRLG 341
+ S + S ++ + +GLG + G
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG 62
Query: 342 EAEKAVSHYKKSSSLANQKDIAKAEAL------HKHLTKCNEARELKRWNDLLKETQNVI 395
+ V+ ++ + + + + +L N+A + L +++
Sbjct: 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY--HKHDLTLAKSM- 119
Query: 396 SFGADSAPQVYALQ--AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVR 453
D + + L + R EA + L +L L
Sbjct: 120 ---NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNL 172
Query: 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI----KGVKMAK------AMASA--RLRGN 501
VY A G+ + + + + +K+ + A A L GN
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNL-GN 231
Query: 502 LLFKASKYKEACYAYSEGLE---------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTA 552
+ ++ A + E L E N LGQ+E A E
Sbjct: 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERR---ANSNLGNSHIFLGQFEDAAEHYKR 288
Query: 553 AL 554
L
Sbjct: 289 TL 290
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+GN +FEDA Y R +A+ +A + L A+
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328
Query: 319 AIRID------PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
+ I RA L + +G E+A+ + ++ LA
Sbjct: 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 611 SNLVFVSSNERFRHFVTSPGMAVVL--F-------CSKAEHKQVLQLMEQVCKRFPSVNF 661
S L+ + + + +V+ F C K + L +++ +++ F
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPC-----KTIAPLFKELSEKYD-AIF 66
Query: 662 LKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
+KV+V+ A+ +S++P F KNG +V ++ G +E +K
Sbjct: 67 VKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIK 114
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-10
Identities = 92/553 (16%), Positives = 161/553 (29%), Gaps = 171/553 (30%)
Query: 28 WSAKKSLPSPPTEGSNNDLKLPISDNHKKPP-----AENSKKRRS-----SSAENVLI-- 75
++ PS T +DN + K R A+NVLI
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 76 ----G----TANVAKPSPKPNQTLP--------RRTSSEPPRLSTSQQKRHNRRSSDAAR 119
G +V S K + + +S L Q+ + + +R
Sbjct: 158 VLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 120 SSTSSSTSSGLTNASKIQDDKRKL---SKYPTC-------------NSLELS--TVVITS 161
S SS+ IQ + R+L Y C N+ LS ++ T
Sbjct: 217 SDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 162 DYQQTNDGKRLVRATSSNITPSGQLGNLKQLGTGNILGNHCPNATVKTVDYLYKNLQDVP 221
Q T+ L AT+++I+ L ++L YL QD+P
Sbjct: 274 FKQVTDF---LSAATTTHISLDHHSMTLTPDEVKSLLLK-----------YLDCRPQDLP 319
Query: 222 KQRYGESRLG--------RNGVM--GNIVKQPSGEFPQCI-SSLNKLDPEELKFMGNEAY 270
++ + R+G+ N + I SSLN L+P E
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-------- 371
Query: 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGL------GRQIEALV-EC--KEAIR 321
+ F+ L+++ + I L+ L + +V + +
Sbjct: 372 -RKMFDR-LSVFPPSAHI-----------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 322 IDPCYHRAHHRLAMLYFRL-----GEAE---KAVSHYKKSSSLANQKDIAKAEA------ 367
P + +Y L E V HY + + D+
Sbjct: 419 KQPKEST--ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYS 475
Query: 368 -LHKHLTKCNEARELK---------RW------------------NDLLKETQNVISFGA 399
+ HL + R+ + L++ + +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 400 DSAPQVYALQAEALLR-LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458
D+ P+ Y A+L L + +E + S YT L +A L+ ++
Sbjct: 536 DNDPK-YERLVNAILDFLPKIEE---NLICSK------YTDLLRIA----LMAEDEAIF- 580
Query: 459 AAGRFEDAVKTAQ 471
E+A K Q
Sbjct: 581 -----EEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 79/586 (13%), Positives = 159/586 (27%), Gaps = 198/586 (33%)
Query: 196 NILGNHCPNATVKTVDYLYKNLQDVPK---QRYGESRLGRN--GVMGNI---VKQPSGEF 247
+I+ + +A T L+ L + Q++ E L N +M I +QPS
Sbjct: 53 HIIMS--KDAVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 248 PQCISSLNKL--DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG 305
I ++L D + YN +R + L L
Sbjct: 110 RMYIEQRDRLYNDNQVFA-----KYNVSRLQPYLKL------------------------ 140
Query: 306 LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
+AL+E + A + +L G K+ +A D+ +
Sbjct: 141 ----RQALLELRPAKNV--LID------GVLGS--G----------KTW-VAL--DVCLS 173
Query: 366 EALHKH---------LTKCNEARE-LKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
+ L CN L+ LL + + +D + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVR----AQVYIAAGRFEDAVKT-- 469
L+R ++ Y LL++ A+ A F + K
Sbjct: 234 LRRLLKSKP-YENC-------------------LLVLLNVQNAKA-WNA--FNLSCKILL 270
Query: 470 ----AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525
Q + I + + ++ LL K + + L E
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRP------QDLPREVL 323
Query: 526 N-SVLLCNRAA-------CRSK------LGQYEKAVEDCTAALIVMPSYSKARLEA-AI- 569
+ + A + +E L P+ + + ++
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVF 381
Query: 570 --------QDYEMLIREIPGNEE-------VGRALFEAQ----------VQLK-KQRGED 603
++ ++ ++ +L E Q + L+ K + E+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 604 VKDM------------KFGSNLVFVSSNERF------RHFVTSPGMAVVLFCSKAEHKQV 645
+ F S+ + +++ H EH +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL------------KNIEHPER 489
Query: 646 LQLMEQVCKRFPSVNFL--KVEVEDHPYIAKSEGVSSIPAFKIYKN 689
+ L V F FL K+ + + A ++++ K YK
Sbjct: 490 MTLFRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 66/445 (14%), Positives = 135/445 (30%), Gaps = 119/445 (26%)
Query: 327 HRAHHRLAMLYFRLGEAE----KAVSHY----KKSSSLANQKD-----IAKAEALHKHLT 373
H HH + F GE + +S + + + +D ++K E H+
Sbjct: 1 HHHHHHMD---FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHII 55
Query: 374 KC-NEARELKR--WNDLLKETQNVISFGADSAPQVYALQAEAL--------LRLQRHQEA 422
+ R W L K+ + V F + Y + + + + E
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 423 HDS-YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481
D YN + F K + R Q Y ++ A ++ P
Sbjct: 116 RDRLYNDNQVF-----AKYN---------VSRLQPY-------LKLRQA--LLELRPAKN 152
Query: 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS--- 538
+I G + + G K + C S ++ + + N C S
Sbjct: 153 VLIDG------VLGS---G----KTWVALDVCL--SYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 539 ----------KLGQYEKAVEDCTAALIVMPSYSKARLEAAI--QDYE--MLI-REIPGNE 583
++ + D ++ + + +A L + + YE +L+ + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNA 256
Query: 584 EVGRALFEAQVQ-LKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEH 642
+ A F + L R + V D + +S + + L K
Sbjct: 257 KAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LL-LKYLD 312
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKS--EGVSSIPAFKIYKNGSRVKEI---- 696
+ L +V P ++ + IA+S +G+++ +K + N ++ I
Sbjct: 313 CRPQDLPREVLTTNP----RRLSI-----IAESIRDGLATWDNWK-HVNCDKLTTIIESS 362
Query: 697 -----PG------HQCELLEKSVKL 710
P + + S +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 65/559 (11%), Positives = 140/559 (25%), Gaps = 199/559 (35%)
Query: 211 DY--LYKNLQDVPKQR------YGE--SRLGRNGVM---GNIVKQPSGEFPQCISSLNKL 257
+Y L ++ +Q Y E RL + + N+ + + + +L +L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLEL 147
Query: 258 DPEELKF---MG--------NEAYNKARFEDALALYDRAIA-INSSKATYRSNKSAALIG 305
P + + + + + + D I +N +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---DFKIFWLN--------------LK 190
Query: 306 LGRQIEALVECKEAI--RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN----- 358
E ++E + + +IDP + + + R+ + + KS N
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 359 ----QKDIAKA------------------------------EALHKHLTKCNEAREL-KR 383
A + LT +E + L +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK 309
Query: 384 W-----NDLLKETQNVISFGADSAPQVYALQAEAL----LRLQR-HQEAHDSYNKSPKFC 433
+ DL +E P+ ++ AE++ D +
Sbjct: 310 YLDCRPQDLPREVLTT-------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 434 LE---------YYTKLFGLAGGAYLLIVRAQVYIAAGRF------------EDAVKTAQD 472
L + +L + +I V
Sbjct: 363 LNVLEPAEYRKMFDRLS---------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 473 AAQIDPNNKEVIKGV------KMAKAMASARLRGNLLFKASKYKEAC-----------YA 515
+ ++ KE + K L +++ + K Y
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 516 YSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEML 575
YS H ++ L + E+ D+ L
Sbjct: 474 YS----HIGHH--L--------KNIEHPERMTL----------------FRMVFLDFRFL 503
Query: 576 IREIPGNEEVGRALFEAQVQLKKQRGEDVKDMKFGSNLVFVSSNERFR------HFVTSP 629
++I A + L ++ +KF + + + R F+ P
Sbjct: 504 EQKI---RHDSTAWNASGSIL-----NTLQQLKFYKPYICDNDPKYERLVNAILDFL--P 553
Query: 630 GMAVVLFCSKAEHKQVLQL 648
+ L CSK + +L++
Sbjct: 554 KIEENLICSK--YTDLLRI 570
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 39/282 (13%), Positives = 99/282 (35%), Gaps = 42/282 (14%)
Query: 262 LKFMGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVE 315
F G ++ + A+ + +A + KA + S + + + ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165
Query: 316 CKEAIRIDPCYH-------RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEA- 367
++A I + + H A + L + E A+SH++K+ S+A + +
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225
Query: 368 -------LHKHLTKCNEARE-LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419
++ +A KR + +E+ + S Q Y L + +L +
Sbjct: 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP-----QAYFLITQIHYKLGKI 280
Query: 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479
+AH+ ++K + Y K + + +++ +G E+A++ D +
Sbjct: 281 DKAHEYHSKG----MAYSQKAGDVIYLSEFEFLKS--LYLSGPDEEAIQGFFDFLESKML 334
Query: 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521
++ A + +++A + + +
Sbjct: 335 YADLED---------FAIDVAKYYHERKNFQKASAYFLKVEQ 367
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 36/234 (15%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG------RQIE-ALVECK 317
M Y + ++ +A I Y +Q E A+ +
Sbjct: 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQ 208
Query: 318 EAIRIDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEA---- 367
+A + R + + + + E A+ ++K++ ++ + +I +
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268
Query: 368 ----LHKHLTKCNEAREL-KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEA 422
+H L K ++A E + ++ + +Y + E L L
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGD----------VIYLSEFEFLKSLYLSGPD 318
Query: 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476
++ ++ A I A+ Y F+ A Q+
Sbjct: 319 EEAIQG----FFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 27/221 (12%), Positives = 72/221 (32%), Gaps = 33/221 (14%)
Query: 238 NIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI------NSS 291
I K+ + + + + ++EDA++ + +A ++
Sbjct: 171 EIYKEHEAYNIRLLQCHSLF--------ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222
Query: 292 KATYRSNKSAALIGLGRQIEALVECKEAIRID------PCYHRAHHRLAMLYFRLGEAEK 345
N + +A+ K AI + P +A+ + ++++LG+ +K
Sbjct: 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK 282
Query: 346 AVSHYKKSSSLA----NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401
A ++ K + + + +++ E L + ++ + D L+
Sbjct: 283 AHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY-----AD 337
Query: 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG 442
A+ + Q+A + K + + G
Sbjct: 338 LEDFAIDVAKYYHERKNFQKASAYFLKV----EQVRQLIQG 374
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 26/309 (8%), Positives = 85/309 (27%), Gaps = 46/309 (14%)
Query: 268 EAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALI--GLGRQIEALVECKEA 319
E K R E+ L D + I+ + Y N + + A+ K+A
Sbjct: 70 EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129
Query: 320 IRI------DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQ-----KDIAKAE-- 366
+++ Y+ + + ++ + +++ + + + +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 367 --ALHKHLTKCNEARE-LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423
L + +A ++ + + + G + ++++A
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG-----RTLYNIGLCKNSQSQYEDAI 244
Query: 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNK 481
+ ++ + + + L + Q++ G+ + A + +
Sbjct: 245 PYFKRA----IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300
Query: 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV--LLCNRAACRSK 539
+ + +L + + Y + + A +
Sbjct: 301 IYL---------SEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE 351
Query: 540 LGQYEKAVE 548
++KA
Sbjct: 352 RKNFQKASA 360
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-10
Identities = 12/58 (20%), Positives = 31/58 (53%)
Query: 656 FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
+V+FL ++ +++ I++ +S++P F I G+ +KE+ G + ++ +
Sbjct: 52 NSNVSFLSIDADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKN 109
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 9e-10
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 610 GSNLVFVSSNERFRHFVTSPGMA----VVLF-------CSKAEHKQVLQLMEQVCKRFP- 657
G +++ + S + + VV F C K + L E + +
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPC-----KMIAPLFETLSNDYAG 55
Query: 658 SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
V FLKV+V+ +A++ G++++P F +YK+G + ++ G + L+ V +++
Sbjct: 56 KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 621 RFRHFVTSPGMAVVLFCSKAEHKQVLQ----------------------LMEQVCKRFPS 658
H P +V + S + KQV + E++
Sbjct: 5 HHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG 64
Query: 659 --VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
V F KV+V++ IA+ G+ ++P F +KNG ++ + G L+ ++ +S+
Sbjct: 65 DKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 46/348 (13%), Positives = 98/348 (28%), Gaps = 76/348 (21%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EL G ++ ++ A+ + + SA LG L + +A
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKA 62
Query: 320 IRIDPCYHRA----------------HHRLAMLYFRLGEAEKAVSHYKKS----SSLANQ 359
+ +H L LG ++A+ ++ L ++
Sbjct: 63 L---EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 360 KDIAKAE----ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY--ALQ---- 409
A+A ++ K + + ++ +N + +A +Y L
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL----QAAVDLYEENLSLVTA 175
Query: 410 --------------AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455
L ++A ++ + L + A
Sbjct: 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR----LLIAKEFGDKAAERRAYSNLGN 231
Query: 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515
YI G FE A + + + +K + +A + L GN Y++A
Sbjct: 232 AYIFLGEFETASEYYKKTLLL----ARQLKD-RAVEAQSCYSL-GNTYTLLQDYEKAIDY 285
Query: 516 YSEGLE---------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+ + L E + + LG +++A+ L
Sbjct: 286 HLKHLAIAQELKDRIGEG---RACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 54/299 (18%), Positives = 95/299 (31%), Gaps = 44/299 (14%)
Query: 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR----AHHRLAMLYFRLGEAEK 345
S+ + + L G + + A+++ + + +L YF L + K
Sbjct: 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61
Query: 346 AVSHYKKS----SSLANQKDIAKAE----ALHKHLTKCNEAREL-KRWNDLLKETQNVIS 396
A+ ++ ++ +Q AKA K L +EA +R D+ +E + +
Sbjct: 62 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121
Query: 397 FGA---------------DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441
P Q A D Y ++ L T L
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN----LSLVTALG 177
Query: 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501
A + G F DAV + I KE G K A+ A + L GN
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---AKEF--GDKAAERRAYSNL-GN 231
Query: 502 LLFKASKYKEACYAYSEGLE--HEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+++ A Y + L + + + + + L YEKA++ L
Sbjct: 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 53/300 (17%), Positives = 97/300 (32%), Gaps = 60/300 (20%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+GN + + AL + + + +A N L LG EA+V C+
Sbjct: 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 319 AIRID------PCYHRAHHRLAMLYFRLGEA--------------------EKAVSHYKK 352
+ I RA + L +Y G++ + AV Y++
Sbjct: 109 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168
Query: 353 S----SSLANQKDIAKAE----ALHKHLTKCNEAREL-KRWNDLLKETQNVISFGADSAP 403
+ ++L ++ +A H L +A ++ + KE D A
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAA 221
Query: 404 QVYALQ--AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461
+ A A + L + A + Y K+ L +L A A Y
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKT----LLLARQLKDRAVEAQSCYSLGNTYTLLQ 277
Query: 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521
+E A+ I +E+ ++ + A L GN + +A + + LE
Sbjct: 278 DYEKAIDYHLKHLAI---AQEL--KDRIGEGRACWSL-GNAYTALGNHDQAMHFAEKHLE 331
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 57/240 (23%)
Query: 249 QCISSLNKLDPEELKFMGNEAYNKAR--FEDALALYDRAIAINSSKATYRSNKSAALIGL 306
+ D E A A +E+ L+L A+ +++ N L
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV-TALGDRAAQGRAFGNLGNTHYLL 196
Query: 307 GRQIEALVECKEAIRIDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKS----SSL 356
G +A++ ++ + I + RA+ L Y LGE E A +YKK+ L
Sbjct: 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256
Query: 357 ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416
++ A++ L L
Sbjct: 257 KDRAVEAQS------------------CYSL----------------------GNTYTLL 276
Query: 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476
Q +++A D + K L +L G Y A G + A+ A+ +I
Sbjct: 277 QDYEKAIDYHLKH----LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 54.3 bits (132), Expect = 2e-09
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+GN Y + +++A+ Y +A+ ++ + A N A G EA+ ++A+ +DP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 325 CYHRAHHRLAMLYFRLG 341
A L + G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 4e-06
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
N A G EA+ ++A+ +DP A + L Y++ G+ ++A+ +Y+K+ L
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 3e-05
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 499 RGNLLFKASKYKEACYAYSEGLE-----HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553
GN +K Y EA Y + LE EA+ N K G Y++A+E A
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY-----NLGNAYYKQGDYDEAIEYYQKA 69
Query: 554 LIVMPSYSKA 563
L + P+ ++A
Sbjct: 70 LELDPNNAEA 79
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI---EALV 314
+ E+ +G + + ++L Y +A+ + A + + L Q +
Sbjct: 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102
Query: 315 ECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
+A+ +D A LA F +A+ ++K
Sbjct: 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEAC 513
+ Y+ + +++ + A Q+ N E + A A + +
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAE----LYAALATVLYYQASQHM-----TAQTR 101
Query: 514 YAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP----------SYSKA 563
+ L ++ L A+ Y +A+E + + S + A
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMA 161
Query: 564 RLEAAIQDYE 573
+L D E
Sbjct: 162 KLLQRRSDLE 171
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 26/230 (11%), Positives = 58/230 (25%), Gaps = 69/230 (30%)
Query: 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333
+++ A Y R + L ++ IR +P L
Sbjct: 2 KWQAVRAEYQRQ-----------RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALL 50
Query: 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQN 393
Y + ++ Y+++ L +
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGE---------------------------------- 76
Query: 394 VISFGADSAPQVYALQAEALLRL---QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLL 450
++YA A L + +K+ T L LA A++
Sbjct: 77 --------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128
Query: 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNN---KEVIKGVKMAKAMASAR 497
+ A++ Q ++ ++++ + MAK +
Sbjct: 129 ----------ANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEV-EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQC 701
K + E++ + + V FLK++ +++ +AK G+ +P FKI K S V E+ G +
Sbjct: 40 KAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY 99
Query: 702 ELLEKSVKLYSS 713
+ L ++++ S
Sbjct: 100 DKLLEAIQAARS 111
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-09
Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 19/131 (14%)
Query: 596 LKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPG--MAVVLF-------CSKAEHKQVL 646
G + + S + + + +S V+ F C ++
Sbjct: 5 HHHSSGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPC-----NKIK 59
Query: 647 QLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG----SRVKEIPGHQCE 702
+ + + V + ++V+ HP + + ++P F+ Y N V + G
Sbjct: 60 EYFKNQLN-YYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQN 118
Query: 703 LLEKSVKLYSS 713
+EK+ + Y
Sbjct: 119 DIEKAFQKYCL 129
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEV-EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQC 701
K + E++ + + V FLK++ +++ +AK G+ +P FKI K S V E+ G +
Sbjct: 53 KAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY 112
Query: 702 ELLEKSVKLYSS 713
+ L ++++ S
Sbjct: 113 DKLLEAIQAARS 124
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 49/344 (14%), Positives = 95/344 (27%), Gaps = 68/344 (19%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EL G ++ ++ A+ + + SA LG L + +A
Sbjct: 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKA 66
Query: 320 IRIDPCYHRA----------------HHRLAMLYFRLGEAEKAVSHYKKS----SSLANQ 359
+ +H L LG ++A+ ++ L ++
Sbjct: 67 L---EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123
Query: 360 KDIAKA--------EALHKHLTKCNEARELKRWNDLLKETQNVISF----------GADS 401
A+A A K + ++ Q + F D
Sbjct: 124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183
Query: 402 APQVYALQ--AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA 459
A Q A L ++A ++ + L + A YI
Sbjct: 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQR----LLIAKEFGDKAAERRAYSNLGNAYIF 239
Query: 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519
G FE A + + + +K + +A + L GN Y++A + +
Sbjct: 240 LGEFETASEYYKKTLLL----ARQLKD-RAVEAQSCYSL-GNTYTLLQDYEKAIDYHLKH 293
Query: 520 LE---------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
L E + + LG +++A+ L
Sbjct: 294 LAIAQELNDRIGEG---RACWSLGNAYTALGNHDQAMHFAEKHL 334
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 49/285 (17%), Positives = 83/285 (29%), Gaps = 56/285 (19%)
Query: 249 QCISSLNKLDPEELKFMGNEAYNKAR--FEDALALYDRAIAINSSKATYRSNKSAALIGL 306
+ D E +A A +E+ L+L A+ +++ N L
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV-TALGDRAAQGRAFGNLGNTHYLL 200
Query: 307 GRQIEALVECKEAIRIDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360
G +A++ ++ + I + RA+ L Y LGE E A +YKK+
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT------- 253
Query: 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420
+ A L EA+ L LQ ++
Sbjct: 254 -LLLARQLKDRA---VEAQSC---YSL----------------------GNTYTLLQDYE 284
Query: 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480
+A D + K L +L G Y A G + A+ A+ +I +
Sbjct: 285 KAIDYHLKH----LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI---S 337
Query: 481 KEVIKGVKMAKAM----ASARLRGNLLFKASKYKEACYAYSEGLE 521
+EV A + G + L
Sbjct: 338 REVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+GN +E A+ + + +AI + + A LG +A+ ++
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332
Query: 319 AIRI-----DPCYH-RAHHRLAMLYFRLGEA-EKAVSHYKKSSSLANQKDIAKAEALHKH 371
+ I D A L+ L LG + S +++ + + + + + +H
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRH 392
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-09
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 616 VSSNERFRHFVTSPGMAVVL--F-------CSKAEHKQVLQLMEQVCKRFPS-VNFLKVE 665
V +T +V+ F C K + + ++ +F V LKV+
Sbjct: 5 VKDKADLDGQLTKASGKLVVLDFFATWCGPC-----KMISPKLVELSTQFADNVVVLKVD 59
Query: 666 VEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
V++ IA +SS+P F KNG +V+E G + LE +K
Sbjct: 60 VDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-09
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECK 317
DP + E ALAL++ + + + L R +A+
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 318 EAIRIDPCYHRAHHRLAMLYF--RLGEAEKAVSHY 350
+ I + + + E H+
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 16/75 (21%), Positives = 29/75 (38%)
Query: 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
R + + AL +E + DP Y ++ L LY RL + A+ Y +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 353 SSSLANQKDIAKAEA 367
+A ++ K +
Sbjct: 67 GIEVAREEGTQKDLS 81
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 9e-09
Identities = 44/312 (14%), Positives = 85/312 (27%), Gaps = 41/312 (13%)
Query: 269 AYNKARFEDALALYDRAIAINSSKATY-----RSNKSAALIGLGRQIEALVECKEAIRI- 322
A N ++A L A+ Y S L G +L ++ ++
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 323 -----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377
+ + + + F G + A +K+ L N++ + + +
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR--IR 141
Query: 378 ARELKRWNDL------LKETQNVIS-FGADSAPQVYALQAEALLRLQRHQEAHDSYNKSP 430
A+ L W L + V+S + Q A+ + L A N+
Sbjct: 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR-- 199
Query: 431 KFCLEYYTKLFGLAGG--AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
LE + VR + G A + A+ + N +
Sbjct: 200 ---LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL---- 252
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEH-EAYNSV-----LLCNRAACRSKLGQ 542
R +++ A E E+ + + L + G+
Sbjct: 253 ----QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 543 YEKAVEDCTAAL 554
A AL
Sbjct: 309 KSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 28/223 (12%)
Query: 274 RFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--- 322
+ A ++A + ++ L R EA + I +
Sbjct: 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167
Query: 323 --DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD-------IAKAEALHKHLT 373
+ L G+ + A S + +L A +
Sbjct: 168 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227
Query: 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFC 433
++A W L+ T + A A + L + A +
Sbjct: 228 TGDKA-AAANW---LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE----L 279
Query: 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476
E L ++ L++ Q+Y AGR DA + DA ++
Sbjct: 280 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 40/286 (13%), Positives = 87/286 (30%), Gaps = 30/286 (10%)
Query: 333 LAMLYFRLGEAEKAVSHYKKS-SSLANQKDIAKAEAL------HKHLTKCNEARELKRWN 385
A + G ++A K + L ++ A + + L +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG--L 443
+ + +V + S Q+E L Q A ++ K+ + + L
Sbjct: 80 EQMARQHDVWHYALWS----LIQQSEILFAQGFLQTAWETQEKA----FQLINEQHLEQL 131
Query: 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503
+L+ +RAQ+ A R ++A +A+ ++ + + + +A + + RG+L
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191
Query: 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS-- 561
S+ G H + S R G A + +
Sbjct: 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251
Query: 562 -------KARLEAAIQDYE----MLIREIPGNEEVGRALFEAQVQL 596
AR + + ++E +L + + L
Sbjct: 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506
A +RAQV I G ++A + A+ A + P + V + +G L ++
Sbjct: 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-LTRS 72
Query: 507 SKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
+ + + Y L ++ G + A E A
Sbjct: 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 618 SNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP 670
+ E A+V F C K + +++++ R P V V+ E P
Sbjct: 8 TTEAGMAHFEGLSDAIVFFHKNLCPHC-----KNMEKVLDKFGARAPQVAISSVDSEARP 62
Query: 671 YIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ K G +P ++G K G
Sbjct: 63 ELMKELGFERVPTLVFIRDGKVAKVFSG 90
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS----RVKEIPG 698
+++ Q++ + + V F+KV+V+ + A + GVSSIPA K + + G
Sbjct: 39 QRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVG 98
Query: 699 HQCELLEKSVKLYSS 713
++ ++ +
Sbjct: 99 ADVSRIKADIEKFKH 113
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 22/235 (9%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-------RQIEALVECK 317
+ Y+ + ++ +A+ I + Y +L + +AL +
Sbjct: 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206
Query: 318 EAIRIDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371
A+ + + +A Y R G+ + AV H++K + ++
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK--AAKVSREKVPDLLPKVL 264
Query: 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431
+ + + + + + + Y L + + +
Sbjct: 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD--- 321
Query: 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486
L Y+ K A A V+ ++ FE A + + ++++KG
Sbjct: 322 -LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA---QEDILKG 372
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 63/302 (20%)
Query: 262 LKFMGNEAYNKARFEDALALYDRAIAINSS------KATYRSNKSAALIGLGRQIEALVE 315
L F G +++ + +A+ Y A KA + + A + + ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 316 CKEAIRI---DPCYHR----AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368
+A+ I P Y + +A Y +KA+ H + + LA
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ------- 216
Query: 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
N+ ++ A + R Q A + + K
Sbjct: 217 -------NDRFIAISLLNI----------------------ANSYDRSGDDQMAVEHFQK 247
Query: 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--DPNNKEVIKG 486
+ + + +L + AG+ + A + ++ ++K +
Sbjct: 248 A----AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302
Query: 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKA 546
+A+ K + +Y E AY + AA +E+A
Sbjct: 303 FLFLQAV------YKETVDERKIHDL-LSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355
Query: 547 VE 548
Sbjct: 356 AA 357
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 53/335 (15%), Positives = 99/335 (29%), Gaps = 28/335 (8%)
Query: 249 QCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR 308
+ I + D E LK + + + L +Y +
Sbjct: 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPT 80
Query: 309 QIEALVECKEAIRIDPCYHRA--HHRLAMLYFRLGEAEKAVSHYKKSSSLANQ--KDIAK 364
E L + + + M F E +A+ +Y+++ DI K
Sbjct: 81 VTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEK 140
Query: 365 AEALHK------HLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418
AE K H+ + + + + L QN + + Q + A +
Sbjct: 141 AEFHFKVAEAYYHMKQTHVS--MYHILQALDIYQNHPLYSIRTI-QSLFVIAGNYDDFKH 197
Query: 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478
+ +A + LE + A L+ A Y +G + AV+ Q AA++
Sbjct: 198 YDKALPHLEAA----LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV-- 251
Query: 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-HEAYNSVLLCNRAACR 537
+ K + L KA + ++A EGL+ A +
Sbjct: 252 --SREKVPDLLPKVLFGL---SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306
Query: 538 SKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDY 572
+ + L + K L A I+
Sbjct: 307 QAVYKETVDERKIHDLL---SYFEKKNLHAYIEAC 338
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 5e-08
Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 41/201 (20%)
Query: 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR- 462
VY L R +R + A + + YT R + + +
Sbjct: 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHF----------RRVLLKSLQKD 147
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522
+ + + P N +V R L+ + ++ L
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHH------------RRVLVEWLRDPSQELEFIADILNQ 195
Query: 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY------------------SKAR 564
+A N +R + ++ ++ L +A
Sbjct: 196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255
Query: 565 LEAAIQDYEMLIREIPGNEEV 585
LE +Q +I+ +P NE
Sbjct: 256 LEREVQYTLEMIKLVPHNESA 276
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 9e-07
Identities = 19/220 (8%), Positives = 60/220 (27%), Gaps = 15/220 (6%)
Query: 270 YNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA 329
+ + + I ++ + L + L + + D + A
Sbjct: 143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH---KHLTKCNEARELKRWND 386
+ + + + + ++D+ + ++ +
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQ----LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER 258
Query: 387 LLKETQNVISFGADSAPQVYAL--QAEALLRLQRHQEAHDSYNKSPKFCLEYYTK-LFGL 443
++ T +I P + + +L+ + + + N+ + + L
Sbjct: 259 EVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF 314
Query: 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-IDPNNKE 482
Y ++ Q A++ + A+ D KE
Sbjct: 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 35/296 (11%), Positives = 85/296 (28%), Gaps = 37/296 (12%)
Query: 285 AIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP-CYHRAHHRLAMLYFRLGEA 343
I + A L R A ++AI ++ Y H R +L +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP 403
+ +++ K+ + H H + L+ + L+ ++++ A +
Sbjct: 149 HEEMNYITAIIEE-QPKN---YQVWH-H--RRVLVEWLRDPSQELEFIADILNQDAKNY- 200
Query: 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463
+ + + + ++ K + + Y +I Y
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR----YFVISNTTGYNDRAVL 256
Query: 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523
E V+ + ++ P+N SA + + + ++ L+ +
Sbjct: 257 EREVQYTLEMIKLVPHN-------------ESAWNYLKGILQDRGLSKYPNLLNQLLDLQ 303
Query: 524 AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREI 579
+S E ++ L A++ E+L +E
Sbjct: 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDI-----------LNKALELCEILAKEK 348
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 29/213 (13%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
N + E A Y + + + + + A G ++ L EA++
Sbjct: 42 AAVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ--- 97
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
+A +++Y G + A ++ L D++KA L++ E E R
Sbjct: 98 YIEKA----SVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLR- 152
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444
A ++ + L+R Q+ EA S K Y ++
Sbjct: 153 ----------------QAAELIGKASRLLVRQQKFDEAAASLQKE----KSMYKEMENYP 192
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477
I + V + + A K +++ I
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 18/188 (9%)
Query: 374 KCNEAREL-KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
K +EA E + LK + DSA YA A A ++ ++A D+Y +
Sbjct: 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE--- 62
Query: 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492
E + L A + R +AV+ + A+ +
Sbjct: 63 -AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-------YVENGTPDT 114
Query: 493 MASARLRGNLLFKASKYKEACYAYS------EGLEHEAYNSVLLCNRAACRSKLGQYEKA 546
A A R L + +A + Y E E + L+ + + ++++A
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174
Query: 547 VEDCTAAL 554
Sbjct: 175 AASLQKEK 182
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 25/208 (12%)
Query: 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLA----NQKDIAK----AEALHKHLTKCNEARE 380
+ + A+ + + E+A Y + + + AK A + K L + EA +
Sbjct: 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97
Query: 381 -LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTK 439
+++ + + E D+A + L+ +A Y + +
Sbjct: 98 YIEKASVMYVENGT-----PDTAAMALDRAGK-LMEPLDLSKAVHLYQQ----AAAVFEN 147
Query: 440 LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499
L A L+ +++ + +F++A + Q + KE+ K +
Sbjct: 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM---YKEMENYPTCYKKCIAQ--- 201
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNS 527
+ + Y A E ++
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSIPGFSG 229
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 12/125 (9%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+ A+ LY +A A+ A S L+ + EA ++
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180
Query: 319 AIRID------PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372
+ P ++ ++ + A ++S S+ AL L
Sbjct: 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL 240
Query: 373 TKCNE 377
+E
Sbjct: 241 QAYDE 245
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 4e-07
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 21/177 (11%)
Query: 395 ISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA 454
I++ S + A + +A ++ +P E+ ++A
Sbjct: 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAW-----------MKA 142
Query: 455 QVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514
VY AA R+ D + + +K + +A +A+A L + EA
Sbjct: 143 VVYGAAERWTDVIDQV--KSAGKWPDKFLAGAAGVAHGVAAANL-ALFTEAERRLTEA-- 197
Query: 515 AYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQD 571
++ EA + A R G AV P A AA++D
Sbjct: 198 --NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA---AALKD 249
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 10/132 (7%)
Query: 244 SGEFPQCISSLNKLDPEELK-----FMGNEAYNKARFEDALALYDRAIAINSS--KATYR 296
G + + +L + R+ D + A
Sbjct: 115 QGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174
Query: 297 SNKSAALIGLGRQIEALVECKEAI---RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
A L EA EA + C LAM G AV+ +
Sbjct: 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234
Query: 354 SSLANQKDIAKA 365
+ + +A A
Sbjct: 235 QTTHPEPKVAAA 246
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 7/131 (5%)
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
+ + G+ +AL EAI+ P L G+ E+A +S L
Sbjct: 2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61
Query: 358 NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417
+ + +HL K +AR+ D + G + + + Q
Sbjct: 62 --PEYLPGASQLRHLVKAAQARK-----DFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 114
Query: 418 RHQEAHDSYNK 428
+++ + +
Sbjct: 115 DYEQVSELALQ 125
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 601 GEDVKDMKFGSNLVFVSSNERFRHFVT--SPGMAVVLFCSKAEH---KQVLQLMEQVCKR 655
G KFG + S ++ + VT + VV+ ++ V Q + + ++
Sbjct: 1 GSSGSSGKFGE--LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARK 58
Query: 656 FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
FP F+K V + + +P +YKNG + G
Sbjct: 59 FPETKFVKAIVNS---CIEHYHDNCLPTIFVYKNGQIEGKFIG 98
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 622 FRHFVTSPGMAVVLFCSKA----EHKQVLQLMEQVCKRFPSVNFL--KVEVEDHPYIAKS 675
++ G V+L S E ++ ++ + FP ++ ++E I
Sbjct: 27 VDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDR 86
Query: 676 EGVSSIPAFKIYKNGSRVKEIPG 698
V PA ++ +G + G
Sbjct: 87 FNVRRFPATLVFTDGKLRGALSG 109
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 1e-06
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 23/118 (19%)
Query: 266 GNEAYNKARFEDALALYDRAIAINSS------------KATYRSNKSAALIGLGRQIEAL 313
+++A A RA+ I+ + A + + AL GL EAL
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 314 VECKEAIRIDP-----------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360
+A+ + A + A+ LG +A+ +KK + ++
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 9e-05
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIV--RAQVYIAAGR 462
+A AEAL L+ EA S +K+ + +L G ++ V RA GR
Sbjct: 59 CHAGLAEALAGLRSFDEALHSADKALHY-FNRRGELNQDEGKLWISAVYSRALALDGLGR 117
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498
+A+ + ++ K G + +A R+
Sbjct: 118 GAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 153
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 53/328 (16%), Positives = 101/328 (30%), Gaps = 79/328 (24%)
Query: 248 PQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK--------ATYRSNK 299
P + +L+ L + ++ R+E A+ L +A+ AT +
Sbjct: 24 PARLRTLHNL--------VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL 75
Query: 300 SAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351
+ + +A +A+ I P + LA+LY + G+ ++A K
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411
++ L ++ + + H + K+ N+L A
Sbjct: 136 RA--LEIREKVLGKD--HPDV--------AKQLNNL----------------------AL 161
Query: 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA--GGAYLLIVRAQVYIAAGRFEDAVKT 469
+++E Y ++ LE Y G A A Y+ G+F+ A
Sbjct: 162 LCQNQGKYEEVEYYYQRA----LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 470 AQDAAQIDPNNKEVIKGVK---MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526
++ E G A K K+ G ++A
Sbjct: 218 YKEILTR---AHEREFGSVDDENKPIWMHA---EEREECKGKQKDGTSFGEYGGWYKACK 271
Query: 527 ----SVL--LCNRAACRSKLGQYEKAVE 548
+V L N A + G++E A
Sbjct: 272 VDSPTVTTTLKNLGALYRRQGKFEAAET 299
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 23/121 (19%)
Query: 248 PQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---------ATYRSN 298
P + N L + + +F+ A LY + + +
Sbjct: 192 PNVAKTKNNL--------ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243
Query: 299 KSAALIGLGRQIEALVECKEAIRID------PCYHRAHHRLAMLYFRLGEAEKAVSHYKK 352
G+Q + + P L LY R G+ E A + +
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
Query: 353 S 353
+
Sbjct: 304 A 304
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 69/252 (27%)
Query: 270 YNKARFEDALALYDRAIAINSSK--------ATYRSNKSAALIGLGRQIEALVECKEAIR 321
++ +++DA L + A+AI A +N + G+ EA CK A+
Sbjct: 80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139
Query: 322 ID--------PCYHRAHHRLAMLYFRLGEAEKAVSHYKKS----------------SSLA 357
I P + + LA+L G+ E+ +Y+++ +
Sbjct: 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199
Query: 358 N-------QKDIAKAEALHKH-LTKCNEARELKRWNDLLKETQNVISFGADSAPQV---Y 406
N Q +AE L+K LT+ +E FG+ + +
Sbjct: 200 NLASCYLKQGKFKQAETLYKEILTRAHE-----------------REFGSVD-DENKPIW 241
Query: 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA--GGAYLLIVRAQVYIAAGRFE 464
E + ++ + K + L +Y G+FE
Sbjct: 242 MHAEEREECKGKQKDGTSFGE------YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFE 295
Query: 465 DAVKTAQDAAQI 476
A + A +
Sbjct: 296 AAETLEEAAMRS 307
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 608 KFGSNLVFVSSNERFRHFVT--SPGMAVVLFCSKAEH---KQVLQLMEQVCKRFPSVNFL 662
KFG + S ++ + VT + V++ ++ V Q + + ++FP F+
Sbjct: 1 KFGE--LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFV 58
Query: 663 KVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K V + + +P +YKNG + G
Sbjct: 59 KAIVNS---CIQHYHDNCLPTIFVYKNGQIEAKFIG 91
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 23/160 (14%), Positives = 40/160 (25%), Gaps = 21/160 (13%)
Query: 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLA----NQKDIAKAE----ALHKHLTKCNEAR 379
A L +Y + ++A + ++ A + +A + + + AR
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86
Query: 380 EL-KRWNDLLKETQNVISFGADSAPQVYALQ--AEALLRLQRHQEAHDSYNKSPKFCLEY 436
+LL D A L A Y KS L Y
Sbjct: 87 RCFLEERELLAS------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKS----LVY 136
Query: 437 YTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI 476
+ A + +A + A I
Sbjct: 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 13/118 (11%), Positives = 34/118 (28%), Gaps = 17/118 (14%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-------RQIEALVECK 317
+G ++ A + + +S SA + A E +
Sbjct: 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE 131
Query: 318 EAIRI-----DPCYH-RAHHRLAMLYFRLGEAEKAVSHYKKSSSLA----NQKDIAKA 365
+++ D A L L + +A H+ ++ + + + + +
Sbjct: 132 KSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNEL 189
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 17/160 (10%), Positives = 37/160 (23%), Gaps = 21/160 (13%)
Query: 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463
+ + R EA S+ + K L V AG +
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQAL----QQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE-- 521
+ A + + ++ + +A + + + + A Y + L
Sbjct: 83 DAARRCFLEEREL----LASLPEDPLAASANAYEV-ATVALHFGDLAGARQEYEKSLVYA 137
Query: 522 -------HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554
A + +A + A
Sbjct: 138 QQADDQVAIACA---FRGLGDLAQQEKNLLEAQQHWLRAR 174
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-06
Identities = 19/151 (12%), Positives = 36/151 (23%), Gaps = 16/151 (10%)
Query: 447 AYLLIVRAQVYIAAG---RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503
+A Y+ G A + + Q P + A + L
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR--AEKALVDIVRHSQHPLD 253
Query: 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY--- 560
K L S++ +A G+ +++ + + + S+
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNY 313
Query: 561 --------SKARLEAAIQDYEMLIREIPGNE 583
K A Y PG
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 57/229 (24%)
Query: 295 YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354
Y+++ A E ++ P + A A++
Sbjct: 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI---------------- 244
Query: 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414
+ + + + L T+ + L ++ +Y ++A + L
Sbjct: 245 -VRHSQHPLDEKQLAALNTEIDNIVTLP---------------ELNNLSIIYQIKAVSAL 288
Query: 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474
+ E++ + N + + Y+L +VY G +A A
Sbjct: 289 VKGKTDESYQAINTGIDLEMSWL---------NYVL--LGKVYEMKGMNREAADAYLTAF 337
Query: 475 QIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523
+ P + N +F+ + + L E
Sbjct: 338 NLRPGA-------------NTLYWIENGIFQ-TSVPYVVPYLDKFLASE 372
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 13/148 (8%), Positives = 42/148 (28%), Gaps = 14/148 (9%)
Query: 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR 462
A +A + + + ++ L L + + ++A + G+
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 463 FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522
+++ + ++ + + L G + +EA AY
Sbjct: 293 TDESYQAINTGIDLEMSW-------------LNYVLLGKVYEMKGMNREAADAYLTAFNL 339
Query: 523 E-AYNSVLLCNRAACRSKLGQYEKAVED 549
N++ ++ + ++
Sbjct: 340 RPGANTLYWIENGIFQTSVPYVVPYLDK 367
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 17/161 (10%), Positives = 46/161 (28%), Gaps = 11/161 (6%)
Query: 203 PNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGN----IVKQPSGEFPQCISSLNKLD 258
+ + + L + +Q P+ Y + ++ + + ++ I ++ L
Sbjct: 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271
Query: 259 PEEL-----KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEAL 313
+ A K + +++ + I + S Y G EA
Sbjct: 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNY-VLLGKVYEMKGMNREAA 330
Query: 314 VECKEAIRIDPCYHRAHH-RLAMLYFRLGEAEKAVSHYKKS 353
A + P + + + + + + S
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLAS 371
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
LI G AL +E ++ +P A++ + Y +LG+ +KA+++Y+ + L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 266 GNEAYNKARFEDALALYDRAIAIN-SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
E N+ E+AL + + K A LG +AL + AI ++P
Sbjct: 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66
Query: 325 CYHRAHHR 332
R
Sbjct: 67 DSPALQAR 74
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 596 LKKQRGEDVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLF----CS--KAEHKQVLQLM 649
+++ D V + E F V + +V F C K + +
Sbjct: 117 VREVSQPDWTPPPEV---TLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAA 173
Query: 650 EQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694
+++ KR P + KV+ +AK VS P KI++ G
Sbjct: 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 47/311 (15%), Positives = 90/311 (28%), Gaps = 71/311 (22%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSK--------ATYRSNKSAALIGLGRQIEALVEC 316
+ + A+ L +A+ AT + + + EA
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66
Query: 317 KEAIRI--------DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368
+A+ I P + LA+LY + G+ ++A K++ L ++ +
Sbjct: 67 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA--LEIREKVLGKF-- 122
Query: 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNK 428
H + K+ N+L A + +E Y +
Sbjct: 123 HPDV--------AKQLNNL----------------------ALLCQNQGKAEEVEYYYRR 152
Query: 429 SPKFCLEYYTKLFGLA--GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486
+ LE Y G A A Y+ G+++DA ++ E G
Sbjct: 153 A----LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR---AHEKEFG 205
Query: 487 VK---MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN----SVL--LCNRAACR 537
A K +++ G ++A +V L + A
Sbjct: 206 SVNGDNKPIWMHA---EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262
Query: 538 SKLGQYEKAVE 548
+ G+ E A
Sbjct: 263 RRQGKLEAAHT 273
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 643 KQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ ++E++ + +P V F K+ +++P IA GV S+P +K+G V EI G
Sbjct: 32 LILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEIIG 87
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Length = 310 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 8e-05
Identities = 34/259 (13%), Positives = 65/259 (25%), Gaps = 21/259 (8%)
Query: 342 EAEKAVSHYKKSSSLANQKDIAKAEALH--KHLTKCNEARELKRWNDLLKETQNVISFGA 399
+ + YK + LA + ++ K L + + K +L ++
Sbjct: 42 VTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKD-----K 96
Query: 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA 459
++P L A A L ++ G LL++ +V +
Sbjct: 97 QNSPYELYLLATAQAILGDLDKS--------LETCVEGIDNDEAEGTTELLLLAIEVALL 148
Query: 460 AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519
A + + + + A + + N Y Y E
Sbjct: 149 NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN----KETATSNFYYYEE- 203
Query: 520 LEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREI 579
L + +A L S + A + L +I
Sbjct: 204 LSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQK-ENAVLYKPTFLANQI 262
Query: 580 PGNEEVGRALFEAQVQLKK 598
G + QL K
Sbjct: 263 TLALMQGLDTEDLTNQLVK 281
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 36/268 (13%), Positives = 82/268 (30%), Gaps = 23/268 (8%)
Query: 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALV 314
K P + +FE+A L +A I + +
Sbjct: 13 KKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDS--------FLKAA 64
Query: 315 ECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKHLT 373
+ ++ + + + G + AV + + + ++ + L
Sbjct: 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124
Query: 374 KCNEARELKRWNDLLKETQNVISFGAD-----SAPQVYALQAEALLRLQRHQEAHDSYNK 428
+ E +L + + + + A + + + A+ ++ EA D Y+K
Sbjct: 125 EILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183
Query: 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488
K + + L + + +AA A +T Q+ DPN + +
Sbjct: 184 LIKSSMGNRLSQWSLKD---YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES-N 239
Query: 489 MAKAMASARLRGNLLFKASKYKEACYAY 516
K++ A G+ + E C +
Sbjct: 240 FLKSLIDAVNEGDS----EQLSEHCKEF 263
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 14/190 (7%)
Query: 362 IAKAEALHKHLTKCNEA-RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420
I+ L K A ++ + +K S+ + A + A +
Sbjct: 1 ISDPVELLK------RAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELN 54
Query: 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480
A DS+ K+ +Y K + + + + G +AV + ++A QI +
Sbjct: 55 LAGDSFLKA----ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110
Query: 481 KEVIKGVKMAKAMASA--RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS 538
+ +G + + Y+ A Y++ N + A ++
Sbjct: 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI-KCADLKA 169
Query: 539 KLGQYEKAVE 548
GQY +A +
Sbjct: 170 LDGQYIEASD 179
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-05
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 622 FRHFVTSPGMAVVLF-----CSKAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKS 675
F+ G VVLF E + ++ ++ FP + +V E +
Sbjct: 25 VDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMAR 84
Query: 676 EGVSSIPAFKIYKNGSRVKEIPG 698
GV+ P+ + + + I
Sbjct: 85 FGVAVCPSLAVVQPERTLGVIAK 107
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 265 MGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+GN Y F DA+ +++ + I +++ SN A I LG A K+
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 319 AIRIDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKS----SSLANQKDIAKA 365
+ + ++ + L Y L + EKA+ ++ K L ++ +A
Sbjct: 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 265 MGNEAYNKARFEDALALYDRAIAIN------SSKATYRSNKSAALIGLGRQIEALVECKE 318
+GN FE A Y + + + + +A + L +A+ +
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114
Query: 319 AIRID------PCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353
+ I RA L Y LG ++A+ +K
Sbjct: 115 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 627 TSPGMAVVLFCSKAEH--KQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPA 683
T+ + V+ F + Q+ ++ + V+V+ + +S IP+
Sbjct: 21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPS 80
Query: 684 FKIYKNGSRVKEIPG 698
+ NG +K G
Sbjct: 81 TVFFFNGQHMKVDYG 95
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+Q+ + V K++ + HP +A + IPAF ++ G + G
Sbjct: 80 RQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAG 136
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 23/140 (16%), Positives = 37/140 (26%), Gaps = 29/140 (20%)
Query: 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEAL 313
E FE + N A + L+ L + EA+
Sbjct: 7 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66
Query: 314 VECKEAIRIDPCYHRAHHRLAMLYFRLGEA-----------EKAVSHYKKSSSLANQKDI 362
+ +EA+ IDP A + Y + A ++++
Sbjct: 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126
Query: 363 --------AKAEALHKHLTK 374
AKA LH K
Sbjct: 127 YLKSLEMTAKAPQLHAEAYK 146
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 618 SNERFRHFVTSPGMAVVLF-------CSKAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDH 669
+ E + V+ F C + + + V F+KV E
Sbjct: 44 TAETLDKLLQDDLPMVIDFWAPWCGPC-----RSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 670 PYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
P ++ + SIP +Y+NG + + G
Sbjct: 99 PALSTRFRIRSIPTIMLYRNGKMIDMLNG 127
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 659 VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700
V KV+ + +P + G+ + P+ K+Y+ K I Q
Sbjct: 54 VRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQ 95
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 651 QVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ + E+ GV P YK G V ++ G
Sbjct: 63 PIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVG 110
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ V ++E++ + + +KV V++HP +A GV S+P +++ G+ V G
Sbjct: 66 RLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVG 122
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 643 KQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
K + E+ K + S F ++ + +P+ A+ GV P FK + +G V E G
Sbjct: 40 KAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVG 96
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.93 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.91 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.9 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.9 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.9 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.89 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.89 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.86 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.84 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.83 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.83 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.8 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.78 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.78 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.77 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.73 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.67 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.67 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.66 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.65 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.57 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.55 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.53 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.52 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.52 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.5 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.46 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.46 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.45 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.43 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.42 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.42 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.42 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.4 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.4 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.39 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.38 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.37 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.37 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.37 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.36 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.36 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.35 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.35 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.34 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.34 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.34 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.34 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.34 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.33 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.32 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.31 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.31 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.29 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.29 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.29 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.29 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.28 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.27 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.27 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.26 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.26 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.25 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.25 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.25 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.23 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.23 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.23 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.22 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.22 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.22 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.22 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.21 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.21 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.2 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.2 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.2 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.2 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.2 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.19 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.19 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.18 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.17 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.15 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.15 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.15 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.14 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.13 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.13 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.1 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.1 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.1 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.1 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.1 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.09 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.09 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.08 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.08 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.07 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.06 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.06 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.06 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.05 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.03 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.03 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.02 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.02 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.98 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.95 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.94 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 98.94 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 98.94 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.93 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 98.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.91 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.88 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.88 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 98.87 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.85 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 98.82 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.82 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.29 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.79 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.79 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 98.78 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.78 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.78 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 98.77 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.72 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.71 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.69 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 98.67 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.66 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.65 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.65 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 98.63 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.07 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.59 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 98.58 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 98.58 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.57 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.56 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.56 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.56 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.54 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.53 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 98.51 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.49 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 98.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.47 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 98.47 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.46 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 98.45 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 98.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.44 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.43 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 98.41 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 98.41 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.4 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.4 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 98.37 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 98.36 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 98.36 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 98.34 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.34 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.34 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.3 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 98.28 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.27 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 98.22 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.21 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.2 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 98.2 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 98.19 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 98.19 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 98.18 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 98.18 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 98.15 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 98.15 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.15 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 98.15 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 98.14 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 98.12 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 98.1 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.09 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 98.07 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.02 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.0 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 97.99 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 97.96 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 97.93 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 97.92 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 97.92 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 97.91 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.89 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.88 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 97.87 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 97.84 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.83 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 97.83 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 97.8 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 97.75 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 97.73 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 97.72 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 97.72 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 97.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.71 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 97.71 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 97.69 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.69 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 97.67 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.67 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 97.64 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 96.77 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 97.59 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 97.53 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.52 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 97.5 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.45 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.43 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.42 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.41 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 97.41 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 97.39 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 96.5 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 97.32 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 97.29 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 97.28 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 97.27 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 97.25 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.25 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 97.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.16 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 97.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.1 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 97.09 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 97.09 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 97.07 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 97.04 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 97.02 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.88 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 96.88 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 96.87 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 96.83 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 96.81 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.81 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 96.79 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 96.78 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 96.77 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.76 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 96.76 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 96.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.72 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 96.72 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 96.7 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.7 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 96.68 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 96.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 96.6 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 96.53 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 96.52 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 96.5 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 96.49 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 96.48 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.4 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 96.36 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 96.34 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 96.31 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 96.27 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.25 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 96.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.16 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 96.13 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 96.05 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.92 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 95.89 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 95.88 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.78 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 95.74 | |
| 3bj5_A | 147 | Protein disulfide-isomerase; thioredoxin fold, cha | 95.56 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 95.48 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 95.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.4 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 95.34 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 95.25 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 95.2 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 95.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.12 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.11 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 95.09 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.92 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 94.82 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 94.59 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 94.57 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.5 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 94.48 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.22 | |
| 2axo_A | 270 | Hypothetical protein ATU2684; alpha beta protein., | 94.08 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 93.97 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.94 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.67 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.5 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.33 | |
| 3l4n_A | 127 | Monothiol glutaredoxin-6; C-terminal domain of GRX | 93.12 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 93.09 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 93.05 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 93.02 | |
| 2h8l_A | 252 | Protein disulfide-isomerase A3; thioredoxin-like f | 92.9 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 92.52 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.18 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=324.24 Aligned_cols=351 Identities=18% Similarity=0.143 Sum_probs=326.8
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+..|+++++.+|+.. . ....+|.++...+ ++|..+++. .+|.++.+++.+|.++...|++++|+.+
T Consensus 16 ~~A~~~~~~~~~~~p~~~--~----~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 16 EAAERHCMQLWRQEPDNT--G----VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHHHHHHHHHHHHCTTCH--H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH--H----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 499999999999998532 2 3345788888777 567777776 8999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 282 YDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 282 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++. .+|++
T Consensus 90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~ 168 (388)
T 1w3b_A 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-TQPNF 168 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH-HCTTC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhh
Q 005125 362 IAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLF 441 (713)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (713)
. ..+..++..+...|++++|+..|++++..+|+.. .++..+|.++...|++++|+..|++++...|+
T Consensus 169 ~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------ 235 (388)
T 1w3b_A 169 A------VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLRALSLSPN------ 235 (388)
T ss_dssp H------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------
T ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------
Confidence 4 5677889999999999999999999999999985 88999999999999999999999999999885
Q ss_pred cccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 442 GLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 442 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
++.++..+|.+|...|++++|+..|+++++++|+++.++. ++|.++...|++++|+..|+++++
T Consensus 236 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 236 ----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC------------NLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH------------HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4668899999999999999999999999999999999887 799999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
..|.++.++.++|.++...|++++|+..|+++++++|++..++. ++|+..|+++++++|++..+...+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 99999999999999999999999999999999999999988776 899999999999999999988887
Q ss_pred HHHH
Q 005125 590 FEAQ 593 (713)
Q Consensus 590 ~~~~ 593 (713)
..+.
T Consensus 380 g~~~ 383 (388)
T 1w3b_A 380 GNTL 383 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=305.84 Aligned_cols=328 Identities=17% Similarity=0.116 Sum_probs=306.1
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI 310 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 310 (713)
+|..+.+.| ++|...+.. ..|+++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445555555 567777766 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 005125 311 EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKE 390 (713)
Q Consensus 311 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 390 (713)
+|+..|++++.++|++..++..+|.++...|++++|+..|++++. .+|+.. ..+..++..+...|++++|+..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~------~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPDLY------CVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTTCT------HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcH------HHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999874 5667788899999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 391 TQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 391 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
|++++...|+.. .++..+|.++...|++++|+..|++++.+.|+ ...++..+|.++...|++++|+..|
T Consensus 158 ~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 158 YLKAIETQPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----------FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp HHHHHHHCTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999985 89999999999999999999999999999885 4568999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 471 QDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 471 ~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
++++.++|++..++. ++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|
T Consensus 227 ~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 227 LRALSLSPNHAVVHG------------NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp HHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHhhCcCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998887 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 551 TAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 551 ~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+++++++|++..++. ++|+..|+++++++|++..+...+....
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999999988876 8999999999999999998887776554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=288.22 Aligned_cols=330 Identities=17% Similarity=0.247 Sum_probs=304.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
+++.++.+|..++..|++++|+.+|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhcc---ccHHHHHHH------HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQ---KDIAKAEAL------HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
...|++++|+..|++++. .+| .+......+ ......+..+...|++++|+..+++++...|.+. .++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLK-SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA-ELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHH
T ss_pred HHcCChHHHHHHHHHHHh-cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch-HHHHH
Confidence 999999999999999999 999 665433222 2345568889999999999999999999999885 89999
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
+|.++...|++++|+..+++++...|+ .+.++..+|.++...|++++|+..|+++++..|++..++..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD----------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999999999999885 5668999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV----LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.+..+.....+|.++...|++++|+..|+++++..|+++. ++..+|.++..+|++++|+..|+++++.+|+++.++
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 7777777788999999999999999999999999999874 467899999999999999999999999999999887
Q ss_pred H------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 565 L------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 565 ~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
. ++|+..|+++++++|++..+...+..+...+++.
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 7 9999999999999999999999999888777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=293.80 Aligned_cols=334 Identities=17% Similarity=0.236 Sum_probs=305.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.++..++.+|..++..|++++|+.+|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|++..++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH---HHHHHH------HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI---AKAEAL------HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~---~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
|.+|..+|++++|+.+|++++. .+|.+. .....+ ...+..+..+...|++++|+..+++++...|.+. .
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA-E 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-H
Confidence 9999999999999999999999 999876 333222 2345668889999999999999999999999885 8
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
++..+|.+|...|++++|+.+|++++...|+ .+.++..+|.+|...|++++|+..|++++..+|++...+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND----------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 8999999999999999999999999987764 567899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS----VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+..+........+|.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++++++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8777777777777889999999999999999999999999984 478999999999999999999999999999999
Q ss_pred hHHHH------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 005125 561 SKARL------------EAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQ 599 (713)
Q Consensus 561 ~~a~~------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 599 (713)
..++. ++|+..|+++++++|++..+...+..+...++..
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 98877 9999999999999999999999988877766654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=285.46 Aligned_cols=336 Identities=15% Similarity=0.077 Sum_probs=283.1
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALY 282 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 282 (713)
.+...+.+++..+|. ... ....+|..+...+ ++|...++. ..|.++.+++.+|.++...|++++|+.+|
T Consensus 10 ~~~~~~~~~~~~~p~--~~~----~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA--DVE----KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp -------------CH--HHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccHH--HHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556677788888863 223 3345788888888 668888887 78999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHH
Q 005125 283 DRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH---RAHHRL------------AMLYFRLGEAEKAV 347 (713)
Q Consensus 283 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~ 347 (713)
+++++.+|++..++..+|.+|..+|++++|+..|++++.++|++. .++..+ |.++...|++++|+
T Consensus 84 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999988 776655 66799999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhh
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYN 427 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 427 (713)
.+|++++. ..|.+. ..+..++..+...|++++|+..+++++..+|.+. .++..+|.+|...|++++|+.+|+
T Consensus 164 ~~~~~~~~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILE-VCVWDA------ELRELRAECFIKEGEPRKAISDLKAASKLKNDNT-EAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHH-HCTTCH------HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCh------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999 999874 5678889999999999999999999999999885 899999999999999999999999
Q ss_pred ccccCChhhHHhhhcc--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 428 KSPKFCLEYYTKLFGL--AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 428 ~al~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
+++...|+....+... ......+..+|.++...|++++|+.+|++++.+.|+++..+. ..+..+|.++..
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~~~~~l~~~~~~ 307 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV--------RSKERICHCFSK 307 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH--------HHHHHHHHHHHT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH--------HHHHHHHHHHHH
Confidence 9999888654321100 001112344599999999999999999999999999876432 223479999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=291.89 Aligned_cols=348 Identities=12% Similarity=0.063 Sum_probs=290.4
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCC-------------------HHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLD-------------------PEELKFM 265 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~-------------------~~~~~~l 265 (713)
++|+..|++++...+++. ....++.++...| ++|...+++..|.. +.+|+.+
T Consensus 134 ~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 134 ARAKCLLTKEDLYNRSSA-------CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp HHHHHHHHHTCGGGTCHH-------HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchh-------HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 489999999876543321 3345788888888 67888888766665 8899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHH--------------------------------------------------
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATY-------------------------------------------------- 295 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------- 295 (713)
|..|...|++++|+.+|+++++.+|.+..+
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999988865444
Q ss_pred ---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 296 ---------------------RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 296 ---------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
+..+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++|+..|++++
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666666777777777777777777666667777777777777777777777766
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 355 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
. ..|.+. ..+..++..+...|++++|+..|+++++..|.+. .+|..+|.+|...|++++|+.+|++++...|
T Consensus 367 ~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 367 D-RHPEKA------VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG-PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp H-HCTTSH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred h-hCcccH------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6 666653 5566778888999999999999999999998875 7888899999999999999999999988877
Q ss_pred hhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Q 005125 435 EYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACY 514 (713)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 514 (713)
+ +..++..+|.+|...|++++|+.+|+++++..|.++..+. .+|.++...|++++|+.
T Consensus 439 ~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 439 G----------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN------------ELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp T----------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHTTCHHHHHH
T ss_pred c----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHHHH
Confidence 4 4568888999999999999999999999999999988877 69999999999999999
Q ss_pred HHHHHhcc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHH
Q 005125 515 AYSEGLEH------EAYN-SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEML 575 (713)
Q Consensus 515 ~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~a 575 (713)
.|+++++. +|+. ..+|..+|.+|...|++++|+..|+++++++|++..++. ++|+..|+++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999988 5654 789999999999999999999999999999999988876 9999999999
Q ss_pred HHhCCCCHHHHHHHHH
Q 005125 576 IREIPGNEEVGRALFE 591 (713)
Q Consensus 576 l~~~p~~~~~~~~l~~ 591 (713)
++++|++..+...+..
T Consensus 577 l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 577 LAISPNEIMASDLLKR 592 (597)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHH
Confidence 9999999998877654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-30 Score=267.36 Aligned_cols=315 Identities=17% Similarity=0.101 Sum_probs=280.2
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ 309 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 309 (713)
.+|.++...| ++|...+++ ..|.++.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 3666666666 557777776 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 005125 310 IEALVECKEAIRIDP---CYHRAHHRL------------AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK 374 (713)
Q Consensus 310 ~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~ 374 (713)
++|+..|+++++++| ++..++..+ |.++...|++++|+.+|++++. ..|.+. ..+..+
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~~~~ 160 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-VCVWDA------ELRELR 160 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH------HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCch------HHHHHH
Confidence 999999999999999 888888877 7999999999999999999999 999884 567888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhc--ccCcHHHHHH
Q 005125 375 CNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFG--LAGGAYLLIV 452 (713)
Q Consensus 375 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~~~ 452 (713)
+..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+..|++++...|+....+.. ..........
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNT-EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 899999999999999999999999999988875442210 0011223446
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCN 532 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 532 (713)
+|.++...|++++|+..|++++...|+++..+. ..+..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTV--------RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 699999999999999999999999999876543 223469999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 533 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|.++..+|++++|+..|+++++++|++..++.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999999999988766
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=290.91 Aligned_cols=348 Identities=14% Similarity=0.087 Sum_probs=313.4
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALAL 281 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 281 (713)
++|+.+|++++..+|++ . ....+|.++...| ++|...+++ ..|.++.+++.+|.++...|++++|+..
T Consensus 23 ~~A~~~~~~al~~~p~~---~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDP---V----FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHHHHHHHHHHHHCCCH---H----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCccH---H----HHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 49999999999999742 2 3345888988888 668888887 8999999999999999999999999999
Q ss_pred HHHHHHhCCCC---------------------------------------------------------------------
Q 005125 282 YDRAIAINSSK--------------------------------------------------------------------- 292 (713)
Q Consensus 282 ~~~al~~~p~~--------------------------------------------------------------------- 292 (713)
|++++..+|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 99999888632
Q ss_pred ----------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHcCCHHH
Q 005125 293 ----------ATYRSNKSAALIG---LGRQIEALVECKEAIR-----I--D-------PCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 293 ----------~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~ 345 (713)
...+..+|.++.. .|++++|+..|++++. + + |.+..++..+|.++...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 6677888888876 8999999999999999 6 3 4557899999999999999999
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHH
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDS 425 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 425 (713)
|+..|++++. .+|. . ..+..++..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+.+
T Consensus 256 A~~~~~~~l~-~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 256 AHEDIKKAIE-LFPR-V------NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp HHHHHHHHHH-HCCC-H------HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT-HHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHh-hCcc-H------HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH-HHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999 8887 3 5677889999999999999999999999999886 7899999999999999999999
Q ss_pred hhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 426 YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
|++++...|+ ...++..+|.++...|++++|+.+|+++++..|++..++. .+|.++..
T Consensus 327 ~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~ 384 (514)
T 2gw1_A 327 FDKAKELDPE----------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN------------FFAEILTD 384 (514)
T ss_dssp HHHHHHTCSS----------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH------------HHHHHHHH
T ss_pred HHHHHHhChh----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH------------HHHHHHHH
Confidence 9999998885 4558899999999999999999999999999999998887 69999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHH-----------
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSV------LLCNRAACRSK---LGQYEKAVEDCTAALIVMPSYSKARL----------- 565 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~----------- 565 (713)
.|++++|+..|++++...|++.. ++..+|.++.. .|++++|+..|+++++++|++..++.
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 99999999999999999988755 99999999999 99999999999999999999988876
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 566 -EAAIQDYEMLIREIPGNEEVGRALFEA 592 (713)
Q Consensus 566 -~~A~~~~~~al~~~p~~~~~~~~l~~~ 592 (713)
++|+..|+++++++|++.++...+...
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999999999999988766443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=284.88 Aligned_cols=328 Identities=13% Similarity=0.060 Sum_probs=292.0
Q ss_pred hhHHHHHHHhhhhcCCCcccccccccc----------------------------------ccchhhhhcCCC--Cchhh
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGR----------------------------------NGVMGNIVKQPS--GEFPQ 249 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~----------------------------------~~~lg~~~~~~~--~~a~~ 249 (713)
.++|+..|+++++.+|... ..+... ...++..+...+ ++|..
T Consensus 216 ~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCY--EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhh--HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 3599999999999998422 211100 011244444445 56888
Q ss_pred hHhh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 250 CISS--LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327 (713)
Q Consensus 250 ~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 327 (713)
.++. ..|.++.++..+|..+...|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++...|++.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH
Confidence 8887 22689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.++..+|.+|...|++++|+.+|+++++ ++|.+. ..+..++..+...|++++|+..|++++...|++. .++.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 445 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSST-MDPQFG------PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LPYL 445 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-HHHH
Confidence 9999999999999999999999999999 999874 5677889999999999999999999999999875 7899
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI------DPNN- 480 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~- 480 (713)
.+|.+|...|++++|+.+|++++...|+ ++.++..+|.+|...|++++|+.+|+++++. +|++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQY----------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 9999999999999999999999988774 5668999999999999999999999999998 5554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..++. .+|.++...|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|++
T Consensus 516 ~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWA------------NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 45555 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH
Q 005125 561 SKARL 565 (713)
Q Consensus 561 ~~a~~ 565 (713)
..++.
T Consensus 584 ~~~~~ 588 (597)
T 2xpi_A 584 IMASD 588 (597)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88776
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=262.21 Aligned_cols=283 Identities=13% Similarity=0.084 Sum_probs=263.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.+.+++.+..+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 35666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC-CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 335 MLYFRLG-EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 335 ~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
.++...| ++++|+.+|++++. .+|.+. ..+..++..+...|++++|+..+++++...|... ..+..+|.+|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~ 169 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATT-LEKTYG------PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-LPMLYIGLEY 169 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHT-TCTTCT------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHH-hCCccH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-HHHHHHHHHH
Confidence 9999999 99999999999999 999874 5678889999999999999999999999999876 7788899999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID---------PNNKEVI 484 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~ 484 (713)
...|++++|+.+|++++...|+ ++.++..+|.++...|++++|+.+|++++... |....++
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPE----------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 9999999999999999999885 46689999999999999999999999999986 5556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
. .+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|++..++
T Consensus 240 ~------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 240 N------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp H------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred H------------HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 6 6999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHH
Q 005125 565 LEA 567 (713)
Q Consensus 565 ~~~ 567 (713)
...
T Consensus 308 ~~l 310 (330)
T 3hym_B 308 TML 310 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 633
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=278.44 Aligned_cols=339 Identities=17% Similarity=0.133 Sum_probs=287.8
Q ss_pred cccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 232 RNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL 306 (713)
Q Consensus 232 ~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 306 (713)
....+|..+...+ ++|+..+++ .+|.++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 3445888888888 678888888 88999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH--------------------------------------------------------
Q 005125 307 GRQIEALVECKEAIRIDPCYHRAH-------------------------------------------------------- 330 (713)
Q Consensus 307 g~~~~A~~~~~~al~~~p~~~~~~-------------------------------------------------------- 330 (713)
|++++|+..|+ ++.++|+....+
T Consensus 107 g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 99999999995 777766543321
Q ss_pred ------------HHH--------HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH-HHHHHHHHHHHHHHhhcHHHHHH
Q 005125 331 ------------HRL--------AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE-ALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 331 ------------~~l--------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
..+ +......|++++|+..|++++. .+|++..... ....+..++..+...|++++|+.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 111 1222233588999999999999 9998865333 34467888899999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 390 ETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKT 469 (713)
Q Consensus 390 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 469 (713)
.+++++..+|+ +.++..+|.++...|++++|+.+|++++...|+ .+.++..+|.++...|++++|+..
T Consensus 265 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 265 LLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE----------YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999998 589999999999999999999999999998885 566899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 470 AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549 (713)
Q Consensus 470 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 549 (713)
|++++..+|++..++. .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 333 ~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYI------------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHCTTCSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998887 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChH----------------------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 550 CTAALIVMPSYSK----------------------------ARLEAAIQDYEMLIREIPGNEEVGRALFEAQVQL 596 (713)
Q Consensus 550 ~~~al~~~p~~~~----------------------------a~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 596 (713)
|++++++.|++.. ..+++|+..|+++++.+|++..+...+..+....
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999876532 3347899999999999999998887777665443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=275.35 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=292.7
Q ss_pred CCCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHH
Q 005125 202 CPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFE 276 (713)
Q Consensus 202 ~~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~ 276 (713)
...+.++|+.+|++++..+|.. .. ....+|.++...+ ++|...+++ .+|.++.+++.+|.++...|+++
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~--~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNE--PV----FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTC--HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HhccHHHHHHHHHHHHhhCCCC--cH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 3445889999999999999742 23 3445899998888 668888887 89999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHH-------------------------------------------------------------
Q 005125 277 DALALYDRAIAINSSKATY------------------------------------------------------------- 295 (713)
Q Consensus 277 ~A~~~~~~al~~~p~~~~~------------------------------------------------------------- 295 (713)
+|+..|+ ++..+|+....
T Consensus 111 ~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 111 DAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 9999995 77776654322
Q ss_pred -------HHHHHH--------HHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 296 -------RSNKSA--------ALIGLGRQIEALVECKEAIRIDPCYHR-------AHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 296 -------~~~la~--------~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
...++. .....|++++|+..|+++++.+|++.. ++..+|.++...|++++|+.+|+++
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111 222335899999999999999999854 5788889999999999999999999
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCC
Q 005125 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFC 433 (713)
Q Consensus 354 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (713)
+. .+|. . ..+..++..+...|++++|+..+++++...|++. .++..+|.++...|++++|+..|++++...
T Consensus 270 ~~-~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 270 IN-LHPT-P------NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP-PTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HH-HCCC-H------HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hh-cCCC-c------hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99 9887 3 4567788889999999999999999999999885 889999999999999999999999999988
Q ss_pred hhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Q 005125 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEAC 513 (713)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 513 (713)
|+ ...++..+|.++...|++++|+.+|+++++.+|++..++. .+|.++...|++++|+
T Consensus 341 ~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 341 PE----------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFAEILTDRGDFDTAI 398 (537)
T ss_dssp TT----------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH------------HHHHHHHHTTCHHHHH
T ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHHH
Confidence 85 4568899999999999999999999999999999998887 6899999999999999
Q ss_pred HHHHHHhccCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHHHH------------
Q 005125 514 YAYSEGLEHEAYNS------VLLCNRAACRSKL----------GQYEKAVEDCTAALIVMPSYSKARL------------ 565 (713)
Q Consensus 514 ~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~------------ 565 (713)
..|+++++..|++. ..++.+|.++... |++++|+..|+++++.+|++..++.
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 99999999887553 3467778999999 9999999999999999999998876
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 566 EAAIQDYEMLIREIPGNEEVGRALF 590 (713)
Q Consensus 566 ~~A~~~~~~al~~~p~~~~~~~~l~ 590 (713)
++|+..|+++++++|++.+....+.
T Consensus 479 ~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 8999999999999999998766544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=263.10 Aligned_cols=294 Identities=11% Similarity=0.033 Sum_probs=257.0
Q ss_pred HHHH-HHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005125 208 KTVD-YLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAI 286 (713)
Q Consensus 208 ~Ai~-~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 286 (713)
+|+. .|++++.+.|...... ...++.+|..++..|++++|+.+|++++
T Consensus 43 ~a~~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al 91 (368)
T 1fch_A 43 DLTSATYDKGYQFEEENPLRD-------------------------------HPQPFEEGLRRLQEGDLPNAVLLFEAAV 91 (368)
T ss_dssp ---CHHHHCCCCCCSSCTTTT-------------------------------CSSHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcCCCCcccc-------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888 8888888876422111 2248899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
+.+|.++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|...|++++|+..|++++. ..|.+.....
T Consensus 92 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 170 (368)
T 1fch_A 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVT 170 (368)
T ss_dssp HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8887642211
Q ss_pred HH----------HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 367 AL----------HKHLTKCNEARELKRWNDLLKETQNVISFGADS-APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 367 ~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
.. ......+..+ ..|++++|+..+++++...|.. .+.++..+|.+|...|++++|+.+|++++...|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 00 0011234444 8999999999999999999993 2588999999999999999999999999998875
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
.+.++..+|.++...|++++|+.+|+++++++|++..++. .+|.++...|++++|+..
T Consensus 250 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 250 ----------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY------------NLGISCINLGAHREAVEH 307 (368)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHCCCHHHHHHH
Confidence 4668999999999999999999999999999999998887 799999999999999999
Q ss_pred HHHHhccCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 516 YSEGLEHEAYN-----------SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 516 ~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
|++++++.|++ ..+|..+|.++..+|++++|...++++++.
T Consensus 308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999988 899999999999999999999999877754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=271.94 Aligned_cols=336 Identities=14% Similarity=0.090 Sum_probs=298.4
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ 309 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 309 (713)
.+|.++...| ++|+..+++ ..| ++.++..+|.++...|++++|+.+|+++++.+|++..++..+|.++..+|++
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 3677777777 568888887 567 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC----------------------------------------------------------------
Q 005125 310 IEALVECKEAIRIDPC---------------------------------------------------------------- 325 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~---------------------------------------------------------------- 325 (713)
++|+..|++++..+|.
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999999988763
Q ss_pred ---------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhh----h--ccccHH-HHHHHHHHHHHHHHHHH
Q 005125 326 ---------------YHRAHHRLAMLYFR---LGEAEKAVSHYKKSSSL----A--NQKDIA-KAEALHKHLTKCNEARE 380 (713)
Q Consensus 326 ---------------~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~----~--~p~~~~-~~~~~~~~~~~~~~~~~ 380 (713)
+..++..+|.++.. .|++++|+..|++++.. + .|.+.. .......+..++..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 26777888888886 89999999999999872 1 444422 23345678889999999
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
.|++++|+..+++++...|. ..++..+|.++...|++++|+.+|++++...|. ...++..+|.++...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN----------NSSVYYHRGQMNFIL 317 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT----------CTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC----------CHHHHHHHHHHHHHh
Confidence 99999999999999999999 689999999999999999999999999999885 455889999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
|++++|+.+|++++..+|.+..++. .+|.++...|++++|+..|+++++..|+++.++..+|.++...
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYI------------QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHH------------HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 9999999999999999999988887 6999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCChH------HH---------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 541 GQYEKAVEDCTAALIVMPSYSK------AR---------------LEAAIQDYEMLIREIPGNEEVGRALFEAQVQ 595 (713)
Q Consensus 541 g~~~~A~~~~~~al~~~p~~~~------a~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 595 (713)
|++++|+..|++++++.|++.. ++ +++|+..|++++..+|++..+...+..+...
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 9999999999999999988743 22 2689999999999999999888777665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=258.87 Aligned_cols=275 Identities=14% Similarity=0.049 Sum_probs=241.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
++..++.+|..++..|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHH----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEA----LHKHLTKCNEARELKRWNDLLKETQNVISFGADS-APQVYALQAEA 412 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~la~~ 412 (713)
..+|++++|+.+|++++. +.|.+...... ......++..+...|++++|+..+++++...|.. .+.++..+|.+
T Consensus 144 ~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIK-QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHH-hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999999 88876532211 2233455788889999999999999999999982 25899999999
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
|...|++++|+.+|++++...|+ ++.++..+|.+|...|++++|+.+|+++++++|++..++.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 285 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE----------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY------- 285 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH-------
Confidence 99999999999999999998885 4668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAY------------NSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
++|.++...|++++|+.+|++++++.|+ ...+|..++.++..+|+.+.|....++.+.
T Consensus 286 -----~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 286 -----NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp -----HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred -----HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 7999999999999999999999999887 367899999999999999999888776544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=246.53 Aligned_cols=288 Identities=10% Similarity=0.027 Sum_probs=256.1
Q ss_pred hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CH
Q 005125 236 MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQ 309 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~ 309 (713)
++..+...+ ++|...++. .+|.++..+..++.+++..|++++|+.+++++++.+|.++.++..+|.++...| ++
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 555555555 456666666 677888889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 005125 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
++|+.+|++++.++|.+..++..+|.++...|++++|+.+|++++. ..|.+. ..+..++..+...|++++|+.
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCH------LPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HTTTCS------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hccccH------HHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999 888864 456668999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 390 ETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKT 469 (713)
Q Consensus 390 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 469 (713)
.+++++...|.+. .++..+|.++...|++++|+.+|++++...+...... .....+.++..+|.++...|++++|+.+
T Consensus 181 ~~~~al~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 181 FFSQALSIAPEDP-FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV-TVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHTTCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC-TTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCCh-HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc-cccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999985 8899999999999999999999999988764322110 0123467899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCCHH
Q 005125 470 AQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR-SKLGQYE 544 (713)
Q Consensus 470 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 544 (713)
|+++++++|++..++. .+|.++...|++++|+.+|+++++++|+++.++..++.++ ...|+.+
T Consensus 259 ~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQNASTYS------------AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTTCSHHHH------------HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCccchHHHH------------HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999998887 6999999999999999999999999999999999999998 5666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=254.63 Aligned_cols=251 Identities=13% Similarity=0.078 Sum_probs=227.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR-QIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
++|.++++|..+|.++...|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4566677899999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
+|.++..+|++++|+.+|++++. ++|++. .+|..+|.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~-ldP~~~-----------------------------------------~a~~~lg~~ 209 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILN-QDAKNY-----------------------------------------HAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH-hCccCH-----------------------------------------HHHHHHHHH
Confidence 99999999999999999999999 999884 788889999
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDA-----VKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~ 486 (713)
+..+|++++|+.+|++++.++|+ +..+|+++|.++.. .|.+++| +.+|++++.++|++..+|.
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~----------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~- 278 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVR----------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN- 278 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH-
T ss_pred HHHcCChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH-
Confidence 99999999999999999999885 56688999999999 5554777 5999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-H
Q 005125 487 VKMAKAMASARLRGNLLFKAS--KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG--------Q-YEKAVEDCTAA-L 554 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l 554 (713)
++|.++...| ++++|++.+.++ +.+|+++.++..+|.+|.++| + +++|+.+|+++ +
T Consensus 279 -----------~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~ 346 (382)
T 2h6f_A 279 -----------YLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 346 (382)
T ss_dssp -----------HHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 6899998888 799999999998 999999999999999999985 2 58888888888 8
Q ss_pred HhCCCChHHHHHHHH
Q 005125 555 IVMPSYSKARLEAAI 569 (713)
Q Consensus 555 ~~~p~~~~a~~~~A~ 569 (713)
+++|.....|...+.
T Consensus 347 ~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 347 EKDTIRKEYWRYIGR 361 (382)
T ss_dssp TTCGGGHHHHHHHHH
T ss_pred HhCchhHHHHHHHHH
Confidence 888887777764443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=255.18 Aligned_cols=341 Identities=14% Similarity=0.090 Sum_probs=280.0
Q ss_pred cccchhhhhcCCC--CchhhhHhh------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------
Q 005125 232 RNGVMGNIVKQPS--GEFPQCISS------------LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAIN-------- 289 (713)
Q Consensus 232 ~~~~lg~~~~~~~--~~a~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 289 (713)
....+|.++..+| ++|+..+++ .+|....+|.++|.+|+.+|++++|+.+|++++++.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3456899999999 567777765 267778899999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 290 SSKATYRSNKSAALIGL--GRQIEALVECKEAIRIDPCYHRAHHRLAMLYF---RLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..+|.++. ..+++++|++.|+++++ ++|.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-l~p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-LNPDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-HCSSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-cCCcchHH
Confidence 35678888898887765 47999999999999999999999999998865 45788899999999999 99998632
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
...+ ....+......+++++|+..+++++..+|... .++..+|.+|...|++++|+..|+++++..|+
T Consensus 212 ~~~l--~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------- 279 (472)
T 4g1t_A 212 KVLL--ALKLHKMREEGEEEGEGEKLVEEALEKAPGVT-DVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--------- 279 (472)
T ss_dssp HHHH--HHHHHHCC------CHHHHHHHHHHHHCSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------
T ss_pred HHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---------
Confidence 2111 11222334456788999999999999999986 88999999999999999999999999999985
Q ss_pred CcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVYIAA-------------------GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
.+.++..+|.+|... +.+++|+..|++++.++|.+..++. .+|.++..
T Consensus 280 -~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~lg~~~~~ 346 (472)
T 4g1t_A 280 -NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS------------ILASLHAL 346 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH------------HHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh------------hHHHHHHH
Confidence 456788888887543 3468899999999999999988887 69999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHhC
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSV---LLCNRAAC-RSKLGQYEKAVEDCTAALIVMPSYSKARL--EAAIQDYEMLIREI 579 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~~A~~~~~~al~~~ 579 (713)
.|++++|+.+|+++++++|.+.. ++..+|.+ +..+|++++|+.+|+++++++|++..... ..+...+++++..+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887643 46677754 45789999999999999999999876554 67778889999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005125 580 PGNEEVGRALFEAQVQLKK 598 (713)
Q Consensus 580 p~~~~~~~~l~~~~~~l~~ 598 (713)
|++..+...|..+.....+
T Consensus 427 p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEK 445 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999888877766554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-27 Score=253.50 Aligned_cols=318 Identities=12% Similarity=0.013 Sum_probs=257.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAI---------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI------ 322 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 322 (713)
.+..+..+|.++..+|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.+|++++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557889999999999999999999999986 6777889999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH---HHHhhcHHHHHHHHHHHH
Q 005125 323 --DPCYHRAHHRLAMLYFRL--GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE---ARELKRWNDLLKETQNVI 395 (713)
Q Consensus 323 --~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al 395 (713)
.+..+.++..+|.++... +++++|+.+|++++. ++|++.. .+...+.. +...++.++|+..+++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~-~~p~~~~------~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKNPE------FTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSTTCHH------HHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-hCCCCHH------HHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 345678899999887765 479999999999999 9999863 33334443 344567789999999999
Q ss_pred HcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 396 SFGADSAPQVYALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
+++|++. .++..+|..+.. .+++++|+.+|++++...|+ .+.++..+|.+|...|++++|+..|+
T Consensus 203 ~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 203 RLNPDNQ-YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG----------VTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHCSSCH-HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCcch-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc----------HHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 9999986 677777776654 46789999999999998884 56688999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMAS-------ARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYE 544 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 544 (713)
++++.+|++..++..++.+..... ....+......+.+++|+..|+++++++|.+..++..+|.+|..+|+++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 999999999998874322111000 0111122223456889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHH---H-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 545 KAVEDCTAALIVMPSYSKAR---L-------------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 545 ~A~~~~~~al~~~p~~~~a~---~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
+|+.+|+++++++|++.... + ++|+..|+++++++|++......+..+.
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999998865431 1 7899999999999999988666554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=253.31 Aligned_cols=265 Identities=14% Similarity=0.098 Sum_probs=232.8
Q ss_pred HHHHhcCHHHHHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 268 EAYNKARFEDALA-LYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 268 ~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
++...|+|++|+. .|++++...|.+ ...++.+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5666799999999 999999998876 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH---------------
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA--------------- 407 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------- 407 (713)
+++|+.+|++++. ++|.+. ..+..++..+...|++++|+..+++++...|........
T Consensus 114 ~~~A~~~~~~al~-~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 114 ELLAISALRRCLE-LKPDNQ------TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHHHHHHHHHh-cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 9999999999999 999874 577888999999999999999999999999987532221
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
.++.++ ..|++++|+.+|++++...|+. ..+.++..+|.+|...|++++|+.+|++++.++|++..++.
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 255 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTS--------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN-- 255 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH--
Confidence 356666 9999999999999999988852 14668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.+|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|++++++.|++
T Consensus 256 ----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 256 ----------KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999987
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=246.81 Aligned_cols=276 Identities=10% Similarity=0.006 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
..++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++++|++..++..+|.+|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHH-------HHHHH-HH-HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALH-------KHLTK-CN-EARELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~-------~~~~~-~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
.|++++|+..|++++. ..|.+........ ..... +. .+...|++++|+..+++++...|.+. .++..+|
T Consensus 102 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLL-SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA-QLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHH-TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH-HHHHHHH
Confidence 9999999999999999 8888643221110 00011 22 46778999999999999999999975 8899999
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++...|++++|+.++++++...|+ .+.++..+|.++...|++++|+.+|+++++.+|++..++.
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 244 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD----------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY----- 244 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-----
Confidence 9999999999999999999998874 4668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------------NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 558 (713)
.+|.++...|++++|+..|++++...|+ +..++..+|.++..+|++++|...++++++..|
T Consensus 245 -------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 245 -------NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred -------HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999 799999999999999999999999998887654
Q ss_pred C
Q 005125 559 S 559 (713)
Q Consensus 559 ~ 559 (713)
+
T Consensus 318 ~ 318 (327)
T 3cv0_A 318 K 318 (327)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=228.95 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=216.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 333 (713)
+++.++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 4433 5569999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|...|++++|+.+|++++. .+|.+. .++..+|.+|
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----------------------------------------~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVD-RDTTRL-----------------------------------------DMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCT-----------------------------------------HHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh-cCcccH-----------------------------------------HHHHHHHHHH
Confidence 9999999999999999999999 888763 7888999999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
...|++++|+.+|++++...|. .+.+++.+|...+..+++++|+.+|+++++++|++..++.
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-------- 180 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTT----------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL-------- 180 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--------
T ss_pred HHccCHHHHHHHHHHHhhcCCC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH--------
Confidence 9999999999999999999874 5668999995555567999999999999999999988877
Q ss_pred HHHHHHHHHHHHccc---HHHHHHHHHHHhccC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 494 ASARLRGNLLFKASK---YKEACYAYSEGLEHE---AY-----NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
.+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+.+|+++++++|+++.
T Consensus 181 ----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 181 ----WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp ----HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ----HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 68999999999 999999999999886 44 2368999999999999999999999999999998876
Q ss_pred HHH
Q 005125 563 ARL 565 (713)
Q Consensus 563 a~~ 565 (713)
++-
T Consensus 257 a~~ 259 (272)
T 3u4t_A 257 AID 259 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=222.24 Aligned_cols=227 Identities=20% Similarity=0.284 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-------HRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 330 (713)
.++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.+++++++++|++ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQA 410 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la 410 (713)
..+|.+|...|++++|+.+|++++. +.|. +
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-------------------------------------------------~ 112 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT-EHRT-------------------------------------------------A 112 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCCC-------------------------------------------------H
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-cCch-------------------------------------------------h
Confidence 9999999999999999999999998 7665 2
Q ss_pred HHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 411 EALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+.+|++++..+|.+..++.
T Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 177 (258)
T 3uq3_A 113 DILTKLRNAEKELKKAEAEAYVNPE----------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS----- 177 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCcc----------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH-----
Confidence 3455667778888888888877775 3457888899999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++
T Consensus 178 -------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 178 -------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999887
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=241.29 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=219.1
Q ss_pred HHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 279 LALYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 279 ~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
+..+.+++...+.+ ...++.+|.++...|++++|+.+|++++..+|++..++..+|.+|...|++++|+.+|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555554444 45599999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH---------HHHHHHHHHHHHccCHHHHHHH
Q 005125 355 SLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP---------QVYALQAEALLRLQRHQEAHDS 425 (713)
Q Consensus 355 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~la~~~~~~g~~~~A~~~ 425 (713)
. ++|.+. ..+..++..+...|++++|+..+++++...|+... .++..+|.++...|++++|+.+
T Consensus 127 ~-~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 127 E-LQPNNL------KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp H-HCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHH
T ss_pred h-cCCCCH------HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 9 999884 66888899999999999999999999999886531 2334459999999999999999
Q ss_pred hhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 426 YNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
|++++...|+. .++.+++.+|.+|...|++++|+.+|+++++++|++..++. .+|.++..
T Consensus 200 ~~~al~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~ 259 (365)
T 4eqf_A 200 YLEAAHQNGDM--------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN------------RLGATLAN 259 (365)
T ss_dssp HHHHHHHSCSS--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHH
T ss_pred HHHHHHhCcCc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHH
Confidence 99999988752 15668999999999999999999999999999999998887 79999999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.|++++|+..|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+..
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999998853
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=239.29 Aligned_cols=244 Identities=13% Similarity=0.009 Sum_probs=223.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhhccccHH
Q 005125 285 AIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 285 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~p~~~~ 363 (713)
++.++|++..++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+.+|++++. ++|++.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l~P~~~- 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPKNY- 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTCH-
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HCCCCH-
Confidence 5678899999999999999999999999999999999999999999999999999997 9999999999999 999873
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus 167 ----------------------------------------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-------- 198 (382)
T 2h6f_A 167 ----------------------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------- 198 (382)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------
T ss_pred ----------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--------
Confidence 88999999999999999999999999999995
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHH-----HHHHH
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK-ASKYKEA-----CYAYS 517 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~ 517 (713)
+..+|+++|.++..+|++++|+.+|+++++++|++..+|. ++|.++.. .|.+++| +.+|+
T Consensus 199 --~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~------------~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 199 --NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN------------QRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp --CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 5668999999999999999999999999999999999998 79999999 5555888 59999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHH---------------------HHHHHHHHH
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLG--QYEKAVEDCTAALIVMPSYSKARL---------------------EAAIQDYEM 574 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~---------------------~~A~~~~~~ 574 (713)
++++++|++..+|+++|.++...| ++++|++.++++ +.+|++..++. ++|+..|++
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999998 699999999998 89999875533 468889999
Q ss_pred H-HHhCCCCHHHHHHHHHHH
Q 005125 575 L-IREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 575 a-l~~~p~~~~~~~~l~~~~ 593 (713)
+ ++++|.....+..+....
T Consensus 344 l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHH
Confidence 9 999999998887766544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-26 Score=217.88 Aligned_cols=201 Identities=20% Similarity=0.230 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|.++++++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 336 LYFRL-----------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 336 ~~~~~-----------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
++..+ |++++|+..|+++++ ++|++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~-----------------------------------------~~ 119 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER-VNPRY-----------------------------------------AP 119 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-HCTTC-----------------------------------------HH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH-hCccc-----------------------------------------HH
Confidence 99988 666666666666666 55554 37
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
++..+|.+|...|++++|+..|++++++. + ++.+++.+|.+|...|++++|+..|+++++++|+++.++
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 188 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE-D----------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-c----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 88899999999999999999999999877 4 455889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
. ++|.++...|++++|+..|+++-.
T Consensus 189 ~------------~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 189 V------------RYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp H------------HHHHHHTC----------------
T ss_pred H------------HHHHHHHHccCHHHHHHHHHHHhh
Confidence 7 699999999999999999987643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=216.68 Aligned_cols=200 Identities=20% Similarity=0.199 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
|.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++ ++|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~------- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA-RTPRYL------- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcH-------
Confidence 778899999999999999999999999999999999999999999999999999999999999999 888873
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-----------cCHHHHHHHhhccccCChhhHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-----------QRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~ 438 (713)
.++..+|.++... |++++|+..|++++++.|+
T Consensus 74 ----------------------------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--- 116 (217)
T 2pl2_A 74 ----------------------------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--- 116 (217)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred ----------------------------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---
Confidence 6778888888888 9999999999999999995
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
.+.+++.+|.+|...|++++|+..|+++++++ +++.++. ++|.++...|++++|+..|++
T Consensus 117 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~------------~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 117 -------YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS------------ALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH------------HHHHHHHHcCCHHHHHHHHHH
Confidence 56689999999999999999999999999999 8888887 799999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
+++++|+++.++.++|.++..+|++++|+..|+++.
T Consensus 177 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999998865
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=233.42 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=247.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCY 326 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 326 (713)
.....++.+|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456678999999999999999999999999999988 468999999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc--------------------HHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR--------------------WND 386 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 386 (713)
..++..+|.+|...|++++|+.+|++++. +.+...........+..++..+...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 78999999999999999999999999999 776654445556788899999999999 999
Q ss_pred HHHHHHHHHHcCC-----CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC
Q 005125 387 LLKETQNVISFGA-----DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG 461 (713)
Q Consensus 387 A~~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 461 (713)
|+..+++++.+.. .....++..+|.+|...|++++|+.+|++++.+.+...... ..+.++..+|.+|...|
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHcC
Confidence 9999999987621 22236888999999999999999999999998876542211 23568999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC------HHHHHHHHH
Q 005125 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN------SVLLCNRAA 535 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~ 535 (713)
++++|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999999999988665422111 12334579999999999999999999999885543 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+|..+|++++|+.+|++++++.+.
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=236.19 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=247.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA----TYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYH 327 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 327 (713)
....++.+|..++..|++++|+.+|+++++.+|++. .++..+|.+|...|++++|+.+|++++.+ .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345688999999999999999999999999999986 58999999999999999999999999998 56678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc-----------------HHHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR-----------------WNDLLKE 390 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~ 390 (713)
.++..+|.+|...|++++|+.+|++++. +.+...........+..++..+...|+ +++|+..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLT-LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 8999999999999999999999999999 644332233446778889999999999 9999999
Q ss_pred HHHHHHcCC-----CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHH
Q 005125 391 TQNVISFGA-----DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFED 465 (713)
Q Consensus 391 ~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 465 (713)
+++++.+.+ .....++..+|.+|...|++++|+.+|++++.+.+...... ....++..+|.+|...|++++
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----AERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHCcCHHH
Confidence 999987632 22346888999999999999999999999998877643211 235588999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHH
Q 005125 466 AVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSK 539 (713)
Q Consensus 466 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~ 539 (713)
|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+. ...++..+|.+|..
T Consensus 282 A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREV------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 99999999998765422111 1233457999999999999999999999988543 25689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 005125 540 LGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 540 ~g~~~~A~~~~~~al~~~p~~ 560 (713)
+|++++|+.+|++++++.+..
T Consensus 356 ~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCHH
T ss_pred hccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=224.28 Aligned_cols=291 Identities=13% Similarity=0.084 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK----ATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHR 328 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 328 (713)
...++..|..++..|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.++++++.+ .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3468899999999999999999999999999998 468889999999999999999999999987 445578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc--------------------HHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR--------------------WNDLL 388 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~ 388 (713)
++..+|.+|...|++++|+.+|++++. +.+...........+..++..+...|+ +++|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999 766544444456678889999999999 99999
Q ss_pred HHHHHHHHcC-----CCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH
Q 005125 389 KETQNVISFG-----ADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463 (713)
Q Consensus 389 ~~~~~al~~~-----p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 463 (713)
..+++++... +.....++..+|.++...|++++|+.++++++.+.+..... ...+.++..+|.++...|++
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK----AAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHcCCH
Confidence 9999988762 22223678899999999999999999999999876653221 12356899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN------SVLLCNRAACR 537 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 537 (713)
++|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhH------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999987665422111 12334479999999999999999999999875532 56899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 005125 538 SKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+|++++|+.++++++++.+..
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=225.58 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHL 372 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 372 (713)
...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++. .+|.+. ..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------~~~~ 93 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDI------AVHA 93 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH------HHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCcCCH------HHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999 999874 5677
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH--------------HH-HHHHccCHHHHHHHhhccccCChhhH
Q 005125 373 TKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ--------------AE-ALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 373 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
.++..+...|++++|+..+++++...|... ..+..+ +. ++...|++++|+.++++++...|+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-- 170 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYE-QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-- 170 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTT-TC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC--
Confidence 889999999999999999999999999875 444444 55 688999999999999999988874
Q ss_pred HhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 438 TKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 438 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
.+.++..+|.++...|++++|+.+|++++..+|++..++. .+|.++...|++++|+..|+
T Consensus 171 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 171 --------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN------------KLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHH
Confidence 5668999999999999999999999999999999998887 69999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++++..|+++.++..+|.++..+|++++|+..|++++++.|+
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=215.94 Aligned_cols=272 Identities=14% Similarity=0.079 Sum_probs=214.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
...+..|+|.+|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...+++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 45677899999999988877777776 35777888999999999999987765 256567788888888888899999
Q ss_pred HHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHH
Q 005125 346 AVSHYKKSSSLA--NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 346 A~~~~~~al~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 423 (713)
|++.+++++. . +|++. ..++.++..+...|++++|+..+++ |.+ +.++..+|.+|..+|++++|+
T Consensus 84 A~~~l~~ll~-~~~~P~~~------~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 84 IVAELDREMS-RSVDVTNT------TFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHH-SCCCCSCH------HHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHh-cccCCCCH------HHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 9999998876 4 57774 4567777888888888888888877 544 478888899999999999999
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA--QVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~ 501 (713)
..|++++...|+... .....+ .++...|++++|+.+|+++++.+|+++.++. ++|.
T Consensus 151 ~~l~~~~~~~p~~~~----------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~------------~la~ 208 (291)
T 3mkr_A 151 KELKKMQDQDEDATL----------TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN------------GQAA 208 (291)
T ss_dssp HHHHHHHHHCTTCHH----------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH------------HHHH
T ss_pred HHHHHHHhhCcCcHH----------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH------------HHHH
Confidence 999998888775321 111112 2233458899999999999999998888877 6899
Q ss_pred HHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCChHHHH-HHHHHHHHHHH
Q 005125 502 LLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEK-AVEDCTAALIVMPSYSKARL-EAAIQDYEMLI 576 (713)
Q Consensus 502 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~-~~A~~~~~~al 576 (713)
++..+|++++|+..|+++++.+|+++.++.++|.++..+|++++ +..+++++++++|+++.+.- .+....|+++.
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLV 285 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876 56788899999998887665 44555555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=222.04 Aligned_cols=333 Identities=12% Similarity=0.032 Sum_probs=281.3
Q ss_pred CCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcC----CC--CchhhhHhh-cCCCCHHHHHHHHHHHHH----
Q 005125 203 PNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQ----PS--GEFPQCISS-LNKLDPEELKFMGNEAYN---- 271 (713)
Q Consensus 203 ~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~----~~--~~a~~~~~~-~~~~~~~~~~~lg~~~~~---- 271 (713)
..+.++|+.+|+++++... .. ....+|.+|.. .+ +.|..++++ ....++.+++.+|..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCCC----HH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 4455699999999998752 22 33458888876 44 558888888 777899999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEA 343 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~ 343 (713)
.+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 89999999999999876 578999999999998 89999999999999986 579999999999998 8999
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE----LKRWNDLLKETQNVISFGADSAPQVYALQAEALLR---- 415 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~---- 415 (713)
++|+.+|+++++ .... .....++..+.. .+++++|+..|++++...+ +.+++.+|.+|..
T Consensus 204 ~~A~~~~~~a~~-~~~~--------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 204 AISAQWYRKSAT-SGDE--------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHHHHHHHHHHH-TTCH--------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHH-CCCH--------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCC
Confidence 999999999988 5432 456777777776 7899999999999998743 4788999999999
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-----GRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.+++++|+.+|+++++.. ++.+++.+|.+|... +++++|+.+|+++++.. ++.++.
T Consensus 272 ~~d~~~A~~~~~~a~~~~------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~----- 332 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG------------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQA----- 332 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHH-----
Confidence 899999999999998642 355888999999998 99999999999999864 556665
Q ss_pred HHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHH
Q 005125 491 KAMASARLRGNLLFKAS---KYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
++|.++...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.+
T Consensus 333 -------~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 333 -------NLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp -------HHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred -------HHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 6899998866 899999999999987 579999999999999 899999999999999875 4545
Q ss_pred HH----------------HHHHHHHHHHHHhCCC---CHHHHHHH
Q 005125 564 RL----------------EAAIQDYEMLIREIPG---NEEVGRAL 589 (713)
Q Consensus 564 ~~----------------~~A~~~~~~al~~~p~---~~~~~~~l 589 (713)
++ ++|+.+|+++++..|+ ++.+...+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 44 8899999999999855 55554443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-22 Score=219.86 Aligned_cols=311 Identities=13% Similarity=0.032 Sum_probs=267.6
Q ss_pred CCchhHHHHHHHhhhhcCCCccccccccccccchhhhhcC----CC--CchhhhHhh-cCCCCHHHHHHHHHHHHH----
Q 005125 203 PNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQ----PS--GEFPQCISS-LNKLDPEELKFMGNEAYN---- 271 (713)
Q Consensus 203 ~~~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~----~~--~~a~~~~~~-~~~~~~~~~~~lg~~~~~---- 271 (713)
+.+.++|+.+|+++++... .. ....+|.++.. .+ ++|...+++ ....++.+++.+|.+|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~~----~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGL----PQ----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHCCC----HH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 4456799999999998652 22 33347888876 33 568888888 777899999999999998
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEA 343 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~ 343 (713)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 89999999999999986 579999999999999 89999999999999876 468999999999997 8999
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc---
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE----LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL--- 416 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--- 416 (713)
++|+.+|+++++ .... ...+.++..+.. .+++++|+..|+++++.+ + +.+++.+|.+|...
T Consensus 240 ~~A~~~~~~a~~-~~~~--------~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~-~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 240 TQSRVLFSQSAE-QGNS--------IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--N-SDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HHHHHHHHHHHT-TTCH--------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--C-HHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHHH-CCCH--------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCCC
Confidence 999999999988 5332 456677778877 899999999999998764 2 47889999999998
Q ss_pred --cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 417 --QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG---RFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 417 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
+++++|+.+|+++++.. .+.+++.+|.+|...| ++++|+.+|+++++. .++.++.
T Consensus 308 ~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~------ 367 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF------ 367 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH------
T ss_pred CcCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH------
Confidence 99999999999998753 3558899999999877 899999999999987 5677776
Q ss_pred HHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---C
Q 005125 492 AMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPS---Y 560 (713)
Q Consensus 492 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~ 560 (713)
++|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.+|+ +
T Consensus 368 ------~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 368 ------NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp ------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 79999999 89999999999999986 469999999999999 99999999999999999954 6
Q ss_pred hHHHH
Q 005125 561 SKARL 565 (713)
Q Consensus 561 ~~a~~ 565 (713)
+.+..
T Consensus 440 ~~a~~ 444 (490)
T 2xm6_A 440 ENRNI 444 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=207.85 Aligned_cols=235 Identities=20% Similarity=0.259 Sum_probs=212.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.+|...|++++|+.+|++++. +.|.+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-------- 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE-QGREMRA-------- 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTC--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCccccc--------
Confidence 46789999999999999999999999999999 8899999999999999999999999999999 7775410
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
++. ..+.++..+|.++...|++++|+.+|++++.+.|.
T Consensus 74 -----------~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------- 111 (258)
T 3uq3_A 74 -----------DYK---------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------- 111 (258)
T ss_dssp -----------CHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------
T ss_pred -----------chH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------
Confidence 000 00378888999999999999999999999987764
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
+.++...|++++|+..+++++..+|.+..++. .+|.++...|++++|+..|+++++.+|.++.++.
T Consensus 112 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 177 (258)
T 3uq3_A 112 --ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR------------LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177 (258)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH
Confidence 56788889999999999999999998888777 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREI------PGNEEVGRALFEA 592 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~------p~~~~~~~~l~~~ 592 (713)
.+|.++..+|++++|+..|+++++++|++..++. ++|+..|+++++++ |++.++...+.++
T Consensus 178 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999999998877 89999999999999 9988887776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=203.08 Aligned_cols=234 Identities=18% Similarity=0.181 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
+|.++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 477899999999999999999999999999998 7888999999999999 999999999999999885 78999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 331 HRLAMLYFR----LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 331 ~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
+.+|.+|.. .+++++|+.+|++++. .+ + +.++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~--~-----------------------------------------~~a~ 113 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACD-LK--Y-----------------------------------------AEGC 113 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C-----------------------------------------HHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC--C-----------------------------------------ccHH
Confidence 999999999 9999999999999988 42 2 3678
Q ss_pred HHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 005125 407 ALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 407 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 478 (713)
..+|.+|.. .+++++|+.+|+++++.. .+.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 888999999 999999999999998754 34578889999999 999999999999999874
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDC 550 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 550 (713)
++.++. .+|.++.. .+++++|+.+|+++++..| +.+++++|.+|.. .+++++|+.+|
T Consensus 181 -~~~a~~------------~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 181 -DSPGCF------------NAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp -CHHHHH------------HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred -CHHHHH------------HHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 455555 69999999 9999999999999999866 8899999999999 99999999999
Q ss_pred HHHHHhCCCChHHH
Q 005125 551 TAALIVMPSYSKAR 564 (713)
Q Consensus 551 ~~al~~~p~~~~a~ 564 (713)
++++++.|++...+
T Consensus 246 ~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 246 KKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999998764433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=209.57 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=210.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
+++.++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|++++. ..++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~----------- 69 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA----------- 69 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-----------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-----------
Confidence 3467889999999999999999999999999999999999999999999999999999999988 4422
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
+.....++..+|.++...|++++|+.+|++++...|+ .+.++.
T Consensus 70 ---------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~ 112 (272)
T 3u4t_A 70 ---------------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT----------RLDMYG 112 (272)
T ss_dssp ---------------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CTHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc----------cHHHHH
Confidence 1222467889999999999999999999999998885 456899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
.+|.+|...|++++|+.+|+++++.+|.+..++. .+|...+..+++++|+..|+++++.+|++..++.
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 180 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFY------------ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999999999999999999887 6895555566999999999999999999999999
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhC---CCCh-----HHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 532 NRAACRSKLGQ---YEKAVEDCTAALIVM---PSYS-----KARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 532 ~la~~~~~~g~---~~~A~~~~~~al~~~---p~~~-----~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.+|.++..+|+ +++|+..|++++++. |+.. .++. ++|+..|+++++++|+++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99999999999 999999999999986 4421 2222 99999999999999999999888
Q ss_pred HHHHH
Q 005125 589 LFEAQ 593 (713)
Q Consensus 589 l~~~~ 593 (713)
+....
T Consensus 261 l~~~~ 265 (272)
T 3u4t_A 261 LKMKL 265 (272)
T ss_dssp HC---
T ss_pred hhhhh
Confidence 76543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=204.58 Aligned_cols=219 Identities=12% Similarity=0.097 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ 417 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g 417 (713)
...|++++|+.+|++++. ..|.+. .++..+|.++...|
T Consensus 102 ~~~~~~~~A~~~~~~~~~-~~~~~~-----------------------------------------~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALR-AGMENG-----------------------------------------DLFYMLGTVLVKLE 139 (243)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTCCSH-----------------------------------------HHHHHHHHHHHHTS
T ss_pred HHhccHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHHhc
Confidence 999999999999999998 777652 45566666666666
Q ss_pred CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005125 418 RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASAR 497 (713)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 497 (713)
++++|+.+|++++...|+ ...++..+|.++...|++++|+..|++++..+|++..++.
T Consensus 140 ~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------ 197 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNEN----------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY------------ 197 (243)
T ss_dssp CHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH------------
T ss_pred cHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH------------
Confidence 666666666666665553 3445666666666667777777777766666666666555
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
.+|.++...|++++|+.+|+++++++|++..++..++.+....
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 4666666667777777777776666666666666666554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-22 Score=199.07 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=215.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCY-HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
.-.+..|+|.+|+..++++...+|++ .++...++.+|..+|++++|+..++. .+|.. +..+...+..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~------~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPE------LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChh------HHHHHHHHHHHc
Confidence 45677899999999999988888877 46888999999999999999987754 22322 456667778888
Q ss_pred HhhcHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISF--GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVY 457 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~ 457 (713)
..+++++|+..+++++.. +|++. .+++.+|.++...|++++|+.+|++ | .+..++..+|.+|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~-~~~~~la~~~~~~g~~~~Al~~l~~-----~----------~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNT-TFLLMAASIYFYDQNPDAALRTLHQ-----G----------DSLECMAMTVQIL 140 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCH-HHHHHHHHHHHHTTCHHHHHHHHTT-----C----------CSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHCCCHHHHHHHHhC-----C----------CCHHHHHHHHHHH
Confidence 889999999999999986 58875 8899999999999999999999998 3 3566899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 537 (713)
..+|++++|+..|+++++.+|++....... .+..++...|++++|+..|+++++..|+++.+++++|.++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLAT----------AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH 210 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999986443210 1223344569999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 538 SKLGQYEKAVEDCTAALIVMPSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 538 ~~~g~~~~A~~~~~~al~~~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
..+|++++|+..|+++++++|+++.++. +.+..+++++++++|+++.+...
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999887 34678999999999999987654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-24 Score=224.27 Aligned_cols=301 Identities=16% Similarity=0.128 Sum_probs=242.3
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLD----PEELKFMGNEAYNKARFEDALALYDRAIAI------NSSKATYRSNK 299 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 299 (713)
.+|.++...| ++|..++++ ..|.+ +.++..+|.+++..|++++|+.+|++++.+ .|....++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3555555555 446666655 45555 357899999999999999999999999887 34457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 005125 300 SAALIGLGRQIEALVECKEAIRIDPCY------HRAHHRLAMLYFRLGE--------------------AEKAVSHYKKS 353 (713)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a 353 (713)
|.++...|++++|+.++++++.+.|.. ..++..+|.+|...|+ +++|+.+|.++
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999986643 5589999999999999 99999999999
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHccCHHHHHHHhhc
Q 005125 354 SSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA-----PQVYALQAEALLRLQRHQEAHDSYNK 428 (713)
Q Consensus 354 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (713)
+. +.+...........+..++..+...|++++|+..+++++.+.+... ..++..+|.+|...|++++|+.+|++
T Consensus 174 l~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 174 LS-LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 98 5433333344456788899999999999999999999998754331 24888999999999999999999999
Q ss_pred cccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 005125 429 SPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK 508 (713)
Q Consensus 429 al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 508 (713)
++.+.+...... ..+.++..+|.+|...|++++|+.+|++++.+.+....... ....+..+|.++...|+
T Consensus 253 al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 253 TLLLARQLKDRA----VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG------EGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcCch----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHHHHcCC
Confidence 998776532211 23668899999999999999999999999988655422111 12334479999999999
Q ss_pred HHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCCHHHH
Q 005125 509 YKEACYAYSEGLEHEA------YNSVLLCNRAACRSKLGQYEKA 546 (713)
Q Consensus 509 ~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A 546 (713)
+++|+.+|++++++.+ ....++..+|.++..+|+...+
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 9999999999998843 3477899999999999987543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=204.67 Aligned_cols=251 Identities=12% Similarity=0.016 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIG-------LGRQ-------IEALVECKEAIR-IDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 340 (713)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 420 (713)
|++++|...|++++. +.|.+. ..+|..+|.++...|+++
T Consensus 113 ~~~~~A~~~~~~al~-~~p~~~----------------------------------------~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA-IEDIDP----------------------------------------TLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp TCHHHHHHHHHHHHT-SSSSCT----------------------------------------HHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHh-ccccCc----------------------------------------cHHHHHHHHHHHHhcCHH
Confidence 999999999999999 888752 127788888899999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
+|+..|+++++..|.. ..++...+.+... .|++++|+.+|+++++.+|+++.+|. .+
T Consensus 152 ~A~~~~~~a~~~~p~~----------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~ 209 (308)
T 2ond_A 152 SGRMIFKKAREDARTR----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL------------AY 209 (308)
T ss_dssp HHHHHHHHHHTSTTCC----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH------------HH
T ss_pred HHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HH
Confidence 9999999999887743 3355555555433 79999999999999999999999887 68
Q ss_pred HHHHHHcccHHHHHHHHHHHhcc---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEH---EAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEML 575 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~a 575 (713)
|..+...|++++|+..|++++.. .|+ ...+|..++..+...|++++|...++++++..|++.....-.....-.+.
T Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r~~~ 289 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKF 289 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCB
T ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHHHHHHh
Confidence 99999999999999999999995 553 68899999999999999999999999999999986533222233333356
Q ss_pred HHhCCCCHHHHHHH
Q 005125 576 IREIPGNEEVGRAL 589 (713)
Q Consensus 576 l~~~p~~~~~~~~l 589 (713)
+.++|++++....|
T Consensus 290 l~~~P~~~~~ln~l 303 (308)
T 2ond_A 290 MDLYPCSASELKAL 303 (308)
T ss_dssp TTBCSSCHHHHHTT
T ss_pred cccCCCCHHHHHhc
Confidence 77889998876653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-21 Score=209.73 Aligned_cols=339 Identities=9% Similarity=-0.027 Sum_probs=264.6
Q ss_pred HHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005125 213 LYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIA 287 (713)
Q Consensus 213 ~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 287 (713)
|+++++.+|. ....|. . ++.. .+.+ +.|...+++ ..|.++..|..++..+...|++++|+..|++++.
T Consensus 2 le~al~~~P~--~~~~w~---~-l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWS---I-LIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHCTT--CHHHHH---H-HHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhCCC--CHHHHH---H-HHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5778888864 233333 2 2332 2334 568888887 7899999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHH
Q 005125 288 INSSKATYRSNKSA-ALIGLGRQIEALV----ECKEAIRI---DPCYHRAHHRLAMLYFR---------LGEAEKAVSHY 350 (713)
Q Consensus 288 ~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~ 350 (713)
..| +..+|..++. +....|++++|.+ .|++++.. +|....+|..++..... .|++++|...|
T Consensus 75 ~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 75 KVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp TCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred cCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 999 5778888875 4456788777665 78887764 56778888888887765 78899999999
Q ss_pred HHHhhhhccccH--HHHHHHHHH-------------------HHHH---------------------------------H
Q 005125 351 KKSSSLANQKDI--AKAEALHKH-------------------LTKC---------------------------------N 376 (713)
Q Consensus 351 ~~al~~~~p~~~--~~~~~~~~~-------------------~~~~---------------------------------~ 376 (713)
++++. . |... ..+..+..+ +..+ .
T Consensus 154 ~~al~-~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 154 QRGCV-N-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHTT-S-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHh-c-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 99998 5 4321 111100000 0000 0
Q ss_pred HHH-----Hh------hc----HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-------ccCHH-------HHHHHhh
Q 005125 377 EAR-----EL------KR----WNDLLKETQNVISFGADSAPQVYALQAEALLR-------LQRHQ-------EAHDSYN 427 (713)
Q Consensus 377 ~~~-----~~------~~----~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~ 427 (713)
.+. .. ++ ..+++..|++++...|.+. .+|..+|..+.. .|+++ +|+..|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 000 01 11 1367788999999999885 899999999986 79987 9999999
Q ss_pred cccc-CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 428 KSPK-FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK-EVIKGVKMAKAMASARLRGNLLFK 505 (713)
Q Consensus 428 ~al~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~lg~~~~~ 505 (713)
+++. ..|+ ...+|..+|.++...|++++|...|++++++.|.++ .+|. .+|.++.+
T Consensus 311 ~Al~~~~p~----------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------~~~~~~~~ 368 (530)
T 2ooe_A 311 RAISTLLKK----------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI------------QYMKFARR 368 (530)
T ss_dssp HHTTTTCSS----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHH------------HHHHHHHH
T ss_pred HHHHHhCcc----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHH------------HHHHHHHH
Confidence 9997 7774 566899999999999999999999999999999985 4665 68889999
Q ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHH
Q 005125 506 ASKYKEACYAYSEGLEHEAYNSVLLCNRAAC-RSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDY 572 (713)
Q Consensus 506 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~ 572 (713)
.|++++|+..|++|++..|.....+...+.+ +...|++++|...|+++++..|+++.+|. ++|...|
T Consensus 369 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999999999999888888777765 45699999999999999999999998887 8999999
Q ss_pred HHHHHhCCCCHH
Q 005125 573 EMLIREIPGNEE 584 (713)
Q Consensus 573 ~~al~~~p~~~~ 584 (713)
++++...|.+++
T Consensus 449 ~~al~~~~~~~~ 460 (530)
T 2ooe_A 449 ERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHSCCSCGG
T ss_pred HHHHhccCCCHH
Confidence 999999887765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-22 Score=195.32 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=148.6
Q ss_pred cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLD-PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
.+|.+ +.+++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34443 45555566666666666666666666665555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
+|.+|...|++++|+.+|++++. . +
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~-~-~----------------------------------------------------- 135 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ-D-T----------------------------------------------------- 135 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT-C-T-----------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh-C-c-----------------------------------------------------
Confidence 55555555555555555555443 0 0
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
..| ....++..+|.++...|++++|+.+|+++++..|.+..++.
T Consensus 136 -------------------~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------- 179 (252)
T 2ho1_A 136 -------------------LYP----------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL------- 179 (252)
T ss_dssp -------------------TCT----------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-------
T ss_pred -------------------cCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 222 13446677788888888888888888888888888877776
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|..+++++++++|++..++
T Consensus 180 -----~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 180 -----EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5888888888999999999888888888888888888888888999888888888888888876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-22 Score=197.62 Aligned_cols=249 Identities=12% Similarity=-0.023 Sum_probs=211.1
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRA 285 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 285 (713)
.++|+..|+++++..|.. .|.++.+++.+|.++...|++++|+.+|+++
T Consensus 21 ~~~A~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (275)
T 1xnf_A 21 QEVILARMEQILASRALT-------------------------------DDERAQLLYERGVLYDSLGLRALARNDFSQA 69 (275)
T ss_dssp HHHHHHHHHHHHTSSCCC-------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccc-------------------------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 359999999999875321 1233557999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 286 IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 286 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
++.+|.++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|...|++++|+.+|++++. +.|.+....
T Consensus 70 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~ 148 (275)
T 1xnf_A 70 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ-DDPNDPFRS 148 (275)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999885221
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccC
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAG 445 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (713)
.........|++++|+..+++++...|... .. ..++.++...++.++|+..+++++...|.... .
T Consensus 149 -------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 213 (275)
T 1xnf_A 149 -------LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ-WG-WNIVEFYLGNISEQTLMERLKADATDNTSLAE------H 213 (275)
T ss_dssp -------HHHHHHHHHHCHHHHHHHHHHHHHHSCCCS-TH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH------H
T ss_pred -------HHHHHHHHhcCHHHHHHHHHHHHhcCCcch-HH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccc------c
Confidence 112233567999999999999999988874 33 44688888999999999999999998876432 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
.+.++..+|.+|...|++++|+.+|++++.++|++... .+.++...|++++|++.|
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---------------HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---------------HHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---------------HHHHHHHHHHHHhhHHHH
Confidence 36789999999999999999999999999999987442 466788899999999887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=222.93 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=202.5
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ-IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHY 350 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 350 (713)
.+.+++|+..+.++....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|+.+|.+|...|++++|+.+|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44588899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc---------cCHHH
Q 005125 351 KKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL---------QRHQE 421 (713)
Q Consensus 351 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~ 421 (713)
+++++ ++|+. .++..+|.+|... |++++
T Consensus 161 ~~al~-~~p~~------------------------------------------~~~~~lg~~~~~~~~~~~~~~~g~~~~ 197 (474)
T 4abn_A 161 SGALT-HCKNK------------------------------------------VSLQNLSMVLRQLQTDSGDEHSRHVMD 197 (474)
T ss_dssp HHHHT-TCCCH------------------------------------------HHHHHHHHHHTTCCCSCHHHHHHHHHH
T ss_pred HHHHh-hCCCH------------------------------------------HHHHHHHHHHHHhccCChhhhhhhHHH
Confidence 99999 77762 6778889999999 99999
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA--------GRFEDAVKTAQDAAQIDP---NNKEVIKGVKMA 490 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~ 490 (713)
|+.+|++++++.|+ ++.+|+.+|.+|... |++++|+.+|+++++++| +++.++.
T Consensus 198 A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----- 262 (474)
T 4abn_A 198 SVRQAKLAVQMDVL----------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL----- 262 (474)
T ss_dssp HHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH-----
T ss_pred HHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH-----
Confidence 99999999999885 566899999999999 999999999999999999 8998887
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
++|.++...|++++|+..|+++++++|+++.++.+++.++..+|++++|+..+.+.
T Consensus 263 -------~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 263 -------NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999999999999999999999999999877543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=201.06 Aligned_cols=228 Identities=11% Similarity=-0.038 Sum_probs=166.2
Q ss_pred HHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005125 269 AYNKARFEDALALYDRAIAIN----SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAE 344 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 344 (713)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+.+|++++.++|++..++..+|.+|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345689999999999999974 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHH
Q 005125 345 KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHD 424 (713)
Q Consensus 345 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 424 (713)
+|+.+|++++. ++|.+. .++..+|.+|...|++++|+.
T Consensus 95 ~A~~~~~~al~-~~~~~~-----------------------------------------~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 95 AAYEAFDSVLE-LDPTYN-----------------------------------------YAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp HHHHHHHHHHH-HCTTCT-----------------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHh-cCcccc-----------------------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 99999999999 888763 455556666666666666666
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~ 504 (713)
+|++++...|+.. .....++ ++...|++++|+..|++++...|.+...+. ++.++.
T Consensus 133 ~~~~a~~~~~~~~----------~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 188 (275)
T 1xnf_A 133 DLLAFYQDDPNDP----------FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-------------IVEFYL 188 (275)
T ss_dssp HHHHHHHHCTTCH----------HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-------------HHHHHT
T ss_pred HHHHHHHhCCCCh----------HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-------------HHHHHH
Confidence 6666666555432 1222222 224456666666666666666666554442 555566
Q ss_pred HcccHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 505 KASKYKEACYAYSEGLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 505 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
..+++++|+..+++++...|.. +.++..+|.+|..+|++++|+..|+++++++|++..
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 6666666666666666665532 566666666666666666666666666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=197.96 Aligned_cols=210 Identities=18% Similarity=0.127 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKH 371 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 371 (713)
.+..++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++. .+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~---------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE-LDSSA---------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc----------
Confidence 3568889999999999999999999999999999999999999999999999999999999999 77766
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHH
Q 005125 372 LTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451 (713)
Q Consensus 372 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 451 (713)
..++..+|.++...|++++|+.+|++++...|+ ...++.
T Consensus 91 -------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~ 129 (243)
T 2q7f_A 91 -------------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME----------NGDLFY 129 (243)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----------SHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------CHHHHH
Confidence 377888899999999999999999999988774 456889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHH
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLC 531 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 531 (713)
.+|.++...|++++|+.+|+++++..|++..++. .+|.++...|++++|+..|+++++..|+++.++.
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARF------------QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 9999999999999999999999999999988877 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|.+|..+|++++|+.+|+++++++|++..++.
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 9999999999999999999999999999987765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=187.77 Aligned_cols=222 Identities=14% Similarity=0.159 Sum_probs=186.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+.+++.++.+|..++..|++++|+.+|+++++.+| .+..+++.+|.++..+|++++|+.+|+++++++|++..++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356789999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|..+|++++|+.+|++++. ++|++......+ ..++..+|.++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~----------------------------------~~~~~~~g~~~ 127 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK-AVPGNATIEKLY----------------------------------AIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH-HCCCcHHHHHHH----------------------------------HHHHHHHhHHH
Confidence 9999999999999999999999 999875321111 25678889999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
...|++++|+.+|++++++.|+.. .+.+++.+|.+|...| ...++++..+.+.....+
T Consensus 128 ~~~~~~~~A~~~~~~al~~~p~~~--------~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--------- 185 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVTSKKW--------KTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--------- 185 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSSCHHH--------HHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH---------
T ss_pred HHhccHHHHHHHHHHHHhcCCCcc--------cHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH---------
Confidence 999999999999999999888610 2347888898886554 455677777777665443
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS 538 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 538 (713)
.+......+.|++|+.+|+++++++|++..++..++.+..
T Consensus 186 -----~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 186 -----ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 3444556778899999999999999999888888877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=186.87 Aligned_cols=173 Identities=15% Similarity=0.167 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
+++.+|+.+|.++...|++++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+++++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL 416 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 416 (713)
+...++++.|+..+.+++. ++|.+. .++..+|.+|..+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~-~~~~~~-----------------------------------------~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA-LNTVYA-----------------------------------------DAYYKLGLVYDSM 120 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH-hCccch-----------------------------------------HHHHHHHHHHHHh
Confidence 9999999999999999999 888873 6777778888888
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
|++++|+.+|+++++++|+ ++.+++.+|.+|..+|++++|+.+|+++++++|+++
T Consensus 121 g~~~~A~~~~~~~l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPG----------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred CCchhHHHHHHHHHHhcch----------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 8888888888888888774 455788888888888888888888888888888754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=187.73 Aligned_cols=213 Identities=14% Similarity=0.078 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|++++. ..|.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------- 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IKPDSA------- 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH-------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCh-------
Confidence 333444444444444444444444444444444444444444455555555555555555544444 444331
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-cCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
.++..+|.++... |++++|+.+|++++. .|.. +....
T Consensus 77 ----------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~-------~~~~~ 114 (225)
T 2vq2_A 77 ----------------------------------EINNNYGWFLCGRLNRPAESMAYFDKALA-DPTY-------PTPYI 114 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC-------SCHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC-------cchHH
Confidence 3344444455555 555555555555444 1110 02345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CCH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA-YNS 527 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~ 527 (713)
++..+|.++...|++++|+.+|+++++..|.+..++. .+|.++...|++++|+..|+++++..| .+.
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK------------ELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 6777788888888888888888888888888877766 588888888888888888888888888 888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 528 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
..+..++.++...|++++|..+++.+++.+|+++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888888888888888888888776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=184.91 Aligned_cols=172 Identities=14% Similarity=0.081 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHH
Q 005125 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK 370 (713)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~ 370 (713)
+++.+|+++|.+|...|++++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+.+++. ..|.+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~~~~~-------- 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LDTTSA-------- 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCCH--------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCchhH--------
Confidence 45667778888888888888888888888888888888888888888888888888887777777 665542
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHH
Q 005125 371 HLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLL 450 (713)
Q Consensus 371 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 450 (713)
. ++
T Consensus 74 ---------------------------------~--------------------------------------------~~ 76 (184)
T 3vtx_A 74 ---------------------------------E--------------------------------------------AY 76 (184)
T ss_dssp ---------------------------------H--------------------------------------------HH
T ss_pred ---------------------------------H--------------------------------------------HH
Confidence 2 34
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHH
Q 005125 451 IVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530 (713)
Q Consensus 451 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 530 (713)
..+|.++...++++.|+..+.+++.++|.+..++. .+|.++..+|++++|+..|+++++++|+++.+|
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 144 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYY------------KLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAY 144 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH------------HHHHHHHHhCCchhHHHHHHHHHHhcchhhhHH
Confidence 44566666666666666666666666666666665 466777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 531 CNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 531 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+++|.+|..+|++++|+.+|++|++++|++
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 777777777777777777777777666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=215.15 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=230.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHH
Q 005125 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH----RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAE 366 (713)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 366 (713)
.....+..+|.++...|++++|+.+|++++++.|++. .++..+|.+|...|++++|+.+|++++. +.........
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT-LAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHccCchH
Confidence 3355677899999999999999999999999999986 5899999999999999999999999998 5322222234
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHccC-----------------HHHHHH
Q 005125 367 ALHKHLTKCNEARELKRWNDLLKETQNVISFG-----ADSAPQVYALQAEALLRLQR-----------------HQEAHD 424 (713)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~la~~~~~~g~-----------------~~~A~~ 424 (713)
....+..++..+...|++++|+..+++++... +.....++..+|.+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 45778889999999999999999999999873 22234788999999999999 999999
Q ss_pred HhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 425 SYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504 (713)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~ 504 (713)
+|++++.+.+..... ...+.++..+|.+|...|++++|+.+|++++++.+....... ....+..+|.++.
T Consensus 205 ~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~ 274 (411)
T 4a1s_A 205 FYQENLKLMRDLGDR----GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------ERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHHH
Confidence 999998765443211 134668999999999999999999999999998765332111 1233457999999
Q ss_pred HcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHH-------
Q 005125 505 KASKYKEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS------KARL------- 565 (713)
Q Consensus 505 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~------- 565 (713)
..|++++|+.+|++++++.+.. ..++..+|.+|..+|++++|+.+|++++++.+... .++.
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 354 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS 354 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999987744 67899999999999999999999999999865432 1222
Q ss_pred -----HHHHHHHHHHHHhCCCC
Q 005125 566 -----EAAIQDYEMLIREIPGN 582 (713)
Q Consensus 566 -----~~A~~~~~~al~~~p~~ 582 (713)
++|+..|++++++.+..
T Consensus 355 ~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 355 AIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHH
T ss_pred HhccHHHHHHHHHHHHHHHhhc
Confidence 88999999999887643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=190.20 Aligned_cols=202 Identities=16% Similarity=0.101 Sum_probs=179.2
Q ss_pred cccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 232 RNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL 306 (713)
Q Consensus 232 ~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 306 (713)
....+|.++...+ ++|...+++ ..|.++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 3445888888888 678888887 78999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcH
Q 005125 307 GRQIEALVECKEAIR--IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384 (713)
Q Consensus 307 g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (713)
|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|++++. ..|.+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~----------------------- 174 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LNRNQ----------------------- 174 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSCC-----------------------
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCccc-----------------------
Confidence 999999999999999 8899999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHH
Q 005125 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFE 464 (713)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 464 (713)
+.++..+|.++...|++++|+.+|++++...|+ ...++..++.++...|+++
T Consensus 175 ------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 175 ------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ----------NARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC----------CHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHccCHH
Confidence 267778888888888888888888888887763 4557788888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 005125 465 DAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 465 ~A~~~~~~al~~~p~~~~~~~ 485 (713)
+|..+++++++..|+++....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888877664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=182.49 Aligned_cols=217 Identities=10% Similarity=-0.027 Sum_probs=191.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.|.++.+++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 335 MLYFRL-GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 335 ~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
.++... |++++|+.+|++++. . |.+ |. ...++..+|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~-~~~-------------------------------------~~-~~~~~~~l~~~~ 123 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-D-PTY-------------------------------------PT-PYIANLNKGICS 123 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-S-TTC-------------------------------------SC-HHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-C-cCC-------------------------------------cc-hHHHHHHHHHHH
Confidence 999999 999999999999987 2 211 11 136778888999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-NNKEVIKGVKMAKA 492 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~ 492 (713)
...|++++|+.+|++++...|+ ...++..+|.++...|++++|+.+|++++...| .+...+.
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 186 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQ----------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL------- 186 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH-------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-------
Confidence 9999999999999998887774 455788899999999999999999999999999 8887775
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHH
Q 005125 493 MASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNR 533 (713)
Q Consensus 493 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 533 (713)
.++.++...|++++|..+++.+++..|+++.+...+
T Consensus 187 -----~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 187 -----LGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 578888889999999999999988999888776544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-22 Score=202.65 Aligned_cols=278 Identities=13% Similarity=0.063 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
...+...|.++...|++++|+.+|+++++..|++ ..++..+|.+|...|++++|+.+|++++. +.+.........
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-LARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcccccHHHH
Confidence 3467788999999999999999999999999998 47889999999999999999999999998 543322233445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHccC--------------------HHHHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADS-----APQVYALQAEALLRLQR--------------------HQEAH 423 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~--------------------~~~A~ 423 (713)
..+..++..+...|++++|+..+++++.+.+.. ...++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 678889999999999999999999999875432 13588899999999999 99999
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
.++++++.+.+..... ...+.++..+|.++...|++++|+.+|++++.+.+....... ....+..+|.++
T Consensus 164 ~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~ 233 (338)
T 3ro2_A 164 DLYEENLSLVTALGDR----AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHH
Confidence 9999998764432211 124568999999999999999999999999987654322111 123445799999
Q ss_pred HHcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHH------
Q 005125 504 FKASKYKEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK------ARL------ 565 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~------ 565 (713)
...|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.++++++++.+.... ++.
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999999999999887654 778999999999999999999999999998654321 222
Q ss_pred ------HHHHHHHHHHHHhCCC
Q 005125 566 ------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 566 ------~~A~~~~~~al~~~p~ 581 (713)
++|+..|++++++.+.
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC---
T ss_pred HHcCChHHHHHHHHHHHHHHHh
Confidence 7888888888887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=212.68 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=186.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARF-EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|+ ..++..
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 5677889999999999999999 99999999999999999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 005125 333 LAMLYFRL---------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAP 403 (713)
Q Consensus 333 la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 403 (713)
+|.+|..+ |++++|+.+|+++++ ++|++ +
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~-----------------------------------------~ 213 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MDVLD-----------------------------------------G 213 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HCTTC-----------------------------------------H
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hCCCC-----------------------------------------H
Confidence 99999999 888888888888888 77776 3
Q ss_pred HHHHHHHHHHHHc--------cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 404 QVYALQAEALLRL--------QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 404 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
.+|..+|.+|... |++++|+.+|++++.+.|... ..+.+++++|.+|...|++++|+.+|+++++
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS-------SNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG-------GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc-------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888899999999 999999999999999888311 2566899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519 (713)
Q Consensus 476 ~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 519 (713)
++|++..++. .++.++...|++++|+..+.+.
T Consensus 287 l~p~~~~a~~------------~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPAWPEPQQ------------REQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTTCHHHHH------------HHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHH------------HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999887 6999999999999999877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-20 Score=202.47 Aligned_cols=318 Identities=12% Similarity=-0.001 Sum_probs=244.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+|.+..+|..++.. ...|++++|...|+++++.+|.+..+|..++..+...|++++|+..|++++...| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 689999999999984 7899999999999999999999999999999999999999999999999999999 57788888
Q ss_pred HH-HHHHcCCHHHHHH----HHHHHhhh--hccccHHHHHHHHHHHHHHHHHH---------HhhcHHHHHHHHHHHHHc
Q 005125 334 AM-LYFRLGEAEKAVS----HYKKSSSL--ANQKDIAKAEALHKHLTKCNEAR---------ELKRWNDLLKETQNVISF 397 (713)
Q Consensus 334 a~-~~~~~g~~~~A~~----~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~ 397 (713)
+. +....|++++|.+ .|++++.. .+|.... .+...+.... ..|+++.|...|++++.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ------IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH------HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH------HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 85 4456788877765 78887761 2343332 2222222222 26889999999999998
Q ss_pred CCCCh-HHHHHHHHHHH-------------HHccCHHHHHHHhhc------cccC-----Chhh----------------
Q 005125 398 GADSA-PQVYALQAEAL-------------LRLQRHQEAHDSYNK------SPKF-----CLEY---------------- 436 (713)
Q Consensus 398 ~p~~~-~~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~~~~---------------- 436 (713)
.|... ..+|....... ...+++.+|...|.. ++.. .|..
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 46542 22332221111 123445555544333 2211 1110
Q ss_pred ----------------------HH-hhhcccCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCC
Q 005125 437 ----------------------YT-KLFGLAGGAYLLIVRAQVYIA-------AGRFE-------DAVKTAQDAAQ-IDP 478 (713)
Q Consensus 437 ----------------------~~-~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~p 478 (713)
.. .....+..+.+|+.+|..+.. .|+++ +|+..|++|++ +.|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 00 000012457789999999986 79987 99999999997 899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS-VLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
++..+|. .+|.++...|++++|...|++++++.|.++ .+|.+++.++.+.|++++|+..|++|++..
T Consensus 319 ~~~~l~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 319 KNMLLYF------------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp SCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 9999988 689999999999999999999999999885 699999999999999999999999999998
Q ss_pred CCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 558 PSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRALFEA 592 (713)
Q Consensus 558 p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~ 592 (713)
|.....+. ++|...|+++++..|+++.++..+...
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 87655433 789999999999999999888776554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=202.21 Aligned_cols=264 Identities=16% Similarity=0.076 Sum_probs=198.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--- 322 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 322 (713)
.+|..+.++..+|.+++..|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHc
Q 005125 323 -----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISF 397 (713)
Q Consensus 323 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 397 (713)
.|....++..+|.+|...|++++|+.+|++++. +.... ...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~---------------------------------~~~ 147 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREKV---------------------------------LGK 147 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHH---------------------------------HCT
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHh---------------------------------cCC
Confidence 355688999999999999999999999999998 42100 000
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
++.....++..+|.++...|++++|+.+|++++......... .......++..+|.+|...|++++|+.+|+++++..
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP--DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 000113678888999999999999999999998862211000 001245688999999999999999999999999764
Q ss_pred CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 478 PN---------NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVE 548 (713)
Q Consensus 478 p~---------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 548 (713)
+. ....+.. ...+...+..+...+.+.+|+..+++++...|..+.++..+|.+|..+|++++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMH------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp HHHHHC------CCHHHH------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCCCCcchHHHHHH------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 32 2222221 23344577777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 005125 549 DCTAALIVMPS 559 (713)
Q Consensus 549 ~~~~al~~~p~ 559 (713)
+|++++++.|+
T Consensus 300 ~~~~al~l~~~ 310 (311)
T 3nf1_A 300 LEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhc
Confidence 99999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=217.88 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++++|.+|..+|++++|+++|+++++++|++..++. ++|.++..+|++++|+.+|+++++++|+++.
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~------------~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS------------NLASIHKDSGNIPEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 4455566666666666666666666666666666665 5666666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++.++|.+|..+|++++|++.+++++++.|+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 6666777777777777776666666665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-20 Score=197.40 Aligned_cols=316 Identities=14% Similarity=0.069 Sum_probs=235.4
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC-----CchhhhHhh-cCCCCHHHHHHHHHHHHHhc-----CH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS-----GEFPQCISS-LNKLDPEELKFMGNEAYNKA-----RF 275 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~-----~~a~~~~~~-~~~~~~~~~~~lg~~~~~~g-----~~ 275 (713)
++|+..|+++.+.. ... ....+|.++...+ ++|..++++ ... ++.+++.+|.+++..+ ++
T Consensus 20 ~~A~~~~~~aa~~g----~~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 20 VTAQQNYQQLAELG----YSE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHT----CCT----GGGTCC-----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHHHHHHHHHCC----CHH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCH
Confidence 49999999998765 223 3345888887766 468888888 545 9999999999777765 89
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHH
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEA---LVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK----AVS 348 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~ 348 (713)
++|+.+|+++++. +++.+++.+|.+|...+...++ ...+.++.. +.++.+++.+|.+|...+.+++ +..
T Consensus 91 ~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 91 HEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999985 4556899999999988765544 444444433 3457899999999999985544 444
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----cCHHH
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELK---RWNDLLKETQNVISFGADSAPQVYALQAEALLRL----QRHQE 421 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~ 421 (713)
+++.+.. .+|. .++.++..+...| ++++|+..|+++...++... ..++.+|.+|... +++++
T Consensus 167 ~~~~a~~-~~~~---------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 167 ICKAALN-TTDI---------CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-QRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHTT-TCTT---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHc-CCHH---------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhCCCCCCCCHHH
Confidence 5555555 5553 5677888888899 99999999999999999885 6668889999766 79999
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV-Y--IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
|+.+|+++. |+ ++.+++.+|.+ | ...+++++|+.+|+++++.. ++.++. +
T Consensus 236 A~~~~~~aa---~g----------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~------------~ 288 (452)
T 3e4b_A 236 AQALLEKIA---PG----------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAEL------------L 288 (452)
T ss_dssp HHHHHHHHG---GG----------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHH------------H
T ss_pred HHHHHHHHc---CC----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHH------------H
Confidence 999999997 43 56689999998 4 46899999999999998654 777776 6
Q ss_pred HHHHHHHcc-----cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH----
Q 005125 499 RGNLLFKAS-----KYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL---- 565 (713)
Q Consensus 499 lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~---- 565 (713)
+|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+... +.+.+
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~ 362 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQ 362 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHH
Confidence 999988 66 9999999999999 8899999999999987 4499999999999988543 44433
Q ss_pred ------------HHHHHHHHHHHHhC
Q 005125 566 ------------EAAIQDYEMLIREI 579 (713)
Q Consensus 566 ------------~~A~~~~~~al~~~ 579 (713)
.+|+.+|+++.+..
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 78999999888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=218.66 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=151.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|+++++|..+|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|..+|++++|+++|+++++ ++|++. .++.++|.+|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~-l~P~~~-----------------------------------------~a~~~Lg~~~ 121 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ-INPAFA-----------------------------------------DAHSNLASIH 121 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHH
Confidence 9999999999999999999999 999873 6677777777
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
..+|++++|+.+|++++++.|+ .+.++.++|.+|..+|++++|++.|++++++.|+
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P~----------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKPD----------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC----------ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 7777777777777777777764 4456777777777777777777777777766443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=201.78 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI---NS---SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC-------YHR 328 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 328 (713)
++.+|..++..|++++|+.+|++++++ .+ ..+.+++.+|.+|..+|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 22 24679999999999999999999999999998443 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
++..+|.+|..+|++++|+.+|++++. +.+...... ....++.+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~-----------------------------------~~~~~~~~ 229 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYS-MAEAEKQPQ-----------------------------------LMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHcCChH-----------------------------------HHHHHHHH
Confidence 899999999999999999999999998 544321000 01267888
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN--NKEVIKG 486 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 486 (713)
+|.+|..+|++++|+.+|++++.+.+.... ....+.++..+|.+|...|++++|+.+|++++++.+. ++....
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 304 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNI----LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS- 304 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-
Confidence 999999999999999999999985332211 0134678999999999999999999999999987543 222211
Q ss_pred HHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 487 VKMAKAMASARLRGNLLFKASK---YKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
.+..+|.++...|+ +++|+..+++. ...|....++..+|.+|..+|++++|+.+|++++++...
T Consensus 305 --------~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 305 --------EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp --------HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 12369999999999 88999999887 445556778999999999999999999999999987543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-19 Score=180.70 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=192.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccccHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++ .+ +
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~--~--- 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN--Y--- 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C---
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC--C---
Confidence 578899999999999999999999999999998 7888999999999999 9999999999999988 43 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhh
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
+.++..+|.+|.. .+++++|+.+|++++...
T Consensus 74 --------------------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 108 (273)
T 1ouv_A 74 --------------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------- 108 (273)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred --------------------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------
Confidence 3788889999999 999999999999998752
Q ss_pred hcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEA 512 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A 512 (713)
.+.+++.+|.+|.. .+++++|+.+|+++++.+ +..++. ++|.++.. .+++++|
T Consensus 109 -----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~------------~lg~~~~~~~~~~~~~~~A 169 (273)
T 1ouv_A 109 -----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT------------ILGSLYDAGRGTPKDLKKA 169 (273)
T ss_dssp -----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH------------HHHHHHHHTSSSCCCHHHH
T ss_pred -----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH------------HHHHHHHcCCCCCCCHHHH
Confidence 45689999999999 999999999999999976 555555 69999998 9999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH----------------HHHHHHH
Q 005125 513 CYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL----------------EAAIQDY 572 (713)
Q Consensus 513 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~----------------~~A~~~~ 572 (713)
+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++..| ..+++ ++|+.+|
T Consensus 170 ~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 170 LASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 9999999987 468999999999999 9999999999999999977 33333 6899999
Q ss_pred HHHHHhCCCCH
Q 005125 573 EMLIREIPGNE 583 (713)
Q Consensus 573 ~~al~~~p~~~ 583 (713)
++++++.|++.
T Consensus 246 ~~a~~~~~~~a 256 (273)
T 1ouv_A 246 KKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHTCHHH
T ss_pred HHHHHcCCHHH
Confidence 99999987644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=176.34 Aligned_cols=169 Identities=13% Similarity=0.058 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
+++.+|.++...|++++|+.+|++++...|+ .+.++..+|.+|..+|++++|+..|+++++++|+++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 113 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE 113 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3333455555555555555555555554443 234677788899999999999999999999999988553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY--NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
..+ ...+..+|.++...|++++|+..|+++++++|+ ++.++.++|.+|..+|+ ..++++..+.+....
T Consensus 114 ~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~ 183 (228)
T 4i17_A 114 KLY-----AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKE 183 (228)
T ss_dssp HHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHH
T ss_pred HHH-----HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHH
Confidence 321 233458999999999999999999999999999 99999999999987664 445666666555543
Q ss_pred HHH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 563 ARL----------EAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 563 a~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
.+. ++|+..|+++++++|++.++...+....
T Consensus 184 ~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 184 KYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 322 8999999999999999999888776544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=188.85 Aligned_cols=239 Identities=10% Similarity=-0.036 Sum_probs=191.1
Q ss_pred CCCHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYN-------KARF-------EDALALYDRAIA-INSSKATYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
|.++++|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|++++
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455567777777763 5775 999999999999 799999999999999999999999999999999
Q ss_pred HhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHcC
Q 005125 321 RIDPCYHR-AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR-ELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 321 ~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~ 398 (713)
+++|.++. +|..+|.++...|++++|+..|+++++ ..|... ..++..+.... ..|++++|+..|+++++..
T Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~~------~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRH------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-STTCCT------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987 999999999999999999999999999 888763 22333333322 2688999999999999998
Q ss_pred CCChHHHHHHHHHHHHHccCHHHHHHHhhccccC---ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 399 ADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF---CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 399 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
|++. .+|..+|.++...|++++|+.+|++++.. .|+ ....+|..++..+...|++++|...++++++
T Consensus 200 p~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~---------~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 200 GDIP-EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE---------KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp TTCH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG---------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8874 78888888898999999999999998875 332 2455788888888889999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 476 ~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
..|++..... ++.+ ..-.+.+.++|.++..+..||.
T Consensus 270 ~~p~~~~~~~-------------~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 270 AFREEYEGKE-------------TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HTTTTTSSCH-------------HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred Hcccccccch-------------HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 8887654322 1111 1111667788888888877663
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=188.02 Aligned_cols=313 Identities=13% Similarity=-0.008 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-----TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------H 327 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 327 (713)
.+++..+|..+...|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+.+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35678899999999999999999999999887553 267889999999999999999999999986543 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH--HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC----
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK--AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS---- 401 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 401 (713)
.++..+|.++...|++++|+.+|++++. +.+..... ......+..++.++...|++++|+..+++++...+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4578899999999999999999999998 55321110 1223456778899999999999999999999987653
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
...++..+|.++...|++++|+.++++++.+.+...... .........++.++...|++++|..++++++...+...
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS---DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch---hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 236788899999999999999999999976533210000 00011122455668899999999999999998776532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
.... ..+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...+++++.
T Consensus 250 ~~~~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1110 01236899999999999999999999887542 235888999999999999999999999998
Q ss_pred hCCC--ChHHHH---HHHHHHHHHHHHhCCCCH
Q 005125 556 VMPS--YSKARL---EAAIQDYEMLIREIPGNE 583 (713)
Q Consensus 556 ~~p~--~~~a~~---~~A~~~~~~al~~~p~~~ 583 (713)
+.+. ....+. +.....+++.+...|-+.
T Consensus 322 ~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 322 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCH
T ss_pred HhccccHHHHHHHccHHHHHHHHHHHhCCCCch
Confidence 8653 223333 566777888888888644
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-20 Score=206.94 Aligned_cols=176 Identities=14% Similarity=0.001 Sum_probs=124.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAI--------AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 325 (713)
++|.++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++..+|++++|+..|+++++++|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4566666666665 66777777777777777 777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
+..+|+.+|.+|..+|++++|+.+|+++++ ++|++. .+
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~-----------------------------------------~~ 503 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD-TFPGEL-----------------------------------------AP 503 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCS-----------------------------------------HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCh-----------------------------------------HH
Confidence 777777777777777777777777777777 666652 56
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
+.++|.+|..+|++++ +.+|+++++++|+ ++.+++++|.+|..+|++++|+..|+++++++|++..++.
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 572 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDG----------VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARL 572 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCc----------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHH
Confidence 6666777777777766 6677776666664 3446666677777777777777777777777776666665
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=179.72 Aligned_cols=213 Identities=16% Similarity=0.119 Sum_probs=174.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---H 327 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 327 (713)
..|.+++.++.+|..++..|+|++|+..|+++++.+|.+ ..+++.+|.+|..+|++++|+..|++++++.|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 578889999999999999999999999999999999998 8999999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 328 RAHHRLAMLYFR--------LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 328 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
.+++.+|.++.. +|++++|+..|++++. ..|++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~------------------------------------ 132 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID-RYPNHEL------------------------------------ 132 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH-HCTTCTT------------------------------------
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-HCcCchh------------------------------------
Confidence 789999999999 9999999999999998 8887631
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
+...+..+....+ .....++.+|.+|...|++++|+..|+++++..|+
T Consensus 133 -----~~~a~~~~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 133 -----VDDATQKIRELRA---------------------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp -----HHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 1111111100000 01224677899999999999999999999999998
Q ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCH
Q 005125 480 NK---EVIKGVKMAKAMASARLRGNLLFKA----------SKYKEACYAYSEGLEHEAYNS---VLLCNRAACRSKLGQY 543 (713)
Q Consensus 480 ~~---~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~ 543 (713)
+. .++. .+|.++..+ |++++|+..|+++++..|+++ .+...++.++..++++
T Consensus 181 ~~~~~~a~~------------~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 181 TPWADDALV------------GAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp STTHHHHHH------------HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHH------------HHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 54 3444 688888877 999999999999999999884 5666778888887777
Q ss_pred HHHH
Q 005125 544 EKAV 547 (713)
Q Consensus 544 ~~A~ 547 (713)
+++.
T Consensus 249 ~~~~ 252 (261)
T 3qky_A 249 EGDA 252 (261)
T ss_dssp HTCT
T ss_pred hhhh
Confidence 6544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-21 Score=205.84 Aligned_cols=305 Identities=14% Similarity=0.002 Sum_probs=208.7
Q ss_pred hhhhhcCCC--CchhhhHhh-cCCCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 005125 236 MGNIVKQPS--GEFPQCISS-LNKLDPEELKFMGNEAYNKARF---EDALALYDRAIAINSSKATYRSNKSAALIGLG-- 307 (713)
Q Consensus 236 lg~~~~~~~--~~a~~~~~~-~~~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 307 (713)
++..+.+.+ ++|...+++ ..+.++++++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence 344444444 456666666 5556777888888888888877 7888888888765 5677788888666655
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 005125 308 ---RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKA---VSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL 381 (713)
Q Consensus 308 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~ 381 (713)
++++|+.+|+++++. .++.+++.||.+|...+..+++ +..+.++.. . .+ ....+.++..+...
T Consensus 86 ~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~--g~------~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-A--GY------PEAGLAQVLLYRTQ 154 (452)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-H--TC------TTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-C--CC------HHHHHHHHHHHHcC
Confidence 778888888888774 3445788888888877654443 333443332 1 11 13566777777777
Q ss_pred hcHHHHHH----HHHHHHHcCCCChHHHHHHHHHHHHHcc---CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH
Q 005125 382 KRWNDLLK----ETQNVISFGADSAPQVYALQAEALLRLQ---RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA 454 (713)
Q Consensus 382 ~~~~~A~~----~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg 454 (713)
+.+++++. .++.+...+| .+++.+|.+|...| ++++|+.+|+++....+. .+..++.+|
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~----------~a~~~~~Lg 220 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTD----ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV----------TAQRVDSVA 220 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS----------CHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence 75544444 4444444444 48899999999999 999999999999987763 455678999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-H--HHcccHHHHHHHHHHHhccCCCCH
Q 005125 455 QVYIAA----GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL-L--FKASKYKEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 455 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~ 527 (713)
.+|... +++++|+.+|+++. |.++.++. ++|.+ + ...+++++|+.+|+++++. .++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~------------~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~ 283 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWV------------SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQP 283 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH------------HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 999776 79999999999998 88888887 68988 4 5689999999999999865 489
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCChHHHH----------------HHHHHHHHHHHHhCCCCHHHH
Q 005125 528 VLLCNRAACRSKLG-----QYEKAVEDCTAALIVMPSYSKARL----------------EAAIQDYEMLIREIPGNEEVG 586 (713)
Q Consensus 528 ~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~----------------~~A~~~~~~al~~~p~~~~~~ 586 (713)
.++++||.+|. .| ++++|+.+|+++. ++++.+.+ ++|+.+|+++.+. +++.+.
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHH
Confidence 99999999998 66 9999999999999 88888876 7889999988764 556655
Q ss_pred HHHHH
Q 005125 587 RALFE 591 (713)
Q Consensus 587 ~~l~~ 591 (713)
..|..
T Consensus 358 ~~Lg~ 362 (452)
T 3e4b_A 358 FAIAQ 362 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=189.74 Aligned_cols=246 Identities=14% Similarity=0.060 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINS------SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC-------YH 327 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 327 (713)
.++.+|..++..|++++|+.+|++++++.+ ..+.+++.+|.+|..+|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999998743 24678999999999999999999999999987442 25
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.++..+|.+|..+|++++|+.+|++++. +.+... +. .....++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~--------------------~~---------------~~~~~~~~ 226 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALE-LAMDIQ--------------------ND---------------RFIAISLL 226 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTT--------------------CH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcC--------------------CH---------------HHHHHHHH
Confidence 6788999999999999999999999998 433210 00 00136788
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK--EVIK 485 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 485 (713)
++|.+|...|++++|+.+|++++.+...... +..+.++..+|.+|...|++++|+.++++++++.+... ....
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVP-----DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999999999984332111 12366899999999999999999999999999865421 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 486 GVKMAKAMASARLRGNLLFKASK---YKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 486 ~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.+..++.++...++ +.+|+..+++. ...|....++..+|.+|...|++++|+.+|++++++.
T Consensus 302 ---------~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 302 ---------LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ---------HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11257888888888 89999998873 3445557788999999999999999999999998763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=175.08 Aligned_cols=239 Identities=12% Similarity=-0.004 Sum_probs=203.8
Q ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Q 005125 263 KFMGNEAYNKARF-EDALALYDRAIAINSSKATYRSNKSAALIGLG--RQIEALVECKEAIRIDPCYHRAHHRLAMLY-- 337 (713)
Q Consensus 263 ~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 337 (713)
+.........|.+ ++|+.++.++|.++|++..+|+.++.++..+| ++++++.++++++..+|.+..+|+..+.++
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3333444555555 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred --HHc---CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 338 --FRL---GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 338 --~~~---g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
... +++++++.++.+++. .+|.+. .+|..++.+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~-~~pkny-----------------------------------------~aW~~R~~v 153 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLS-SDPKNH-----------------------------------------HVWSYRKWL 153 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHH
Confidence 767 788999999999998 888874 667777777
Q ss_pred HHHccCHH--HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHH
Q 005125 413 LLRLQRHQ--EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR------FEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 413 ~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~ 484 (713)
+..+|.++ ++++++++++..+|. +..+|..++.++...++ ++++++++++++..+|.+..+|
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~~----------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDLK----------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 77777777 778888888777774 44477777888777776 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHH-HHHHHHHHhccC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKE-ACYAYSEGLEHE---AYNSVLLCNRAACRSKLGQYEKAVEDCTAALI-VMPS 559 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~ 559 (713)
. .++.++...|+..+ ...++.++++++ |.++.++..+|.+|.+.|+.++|+++|+.+.+ .||.
T Consensus 224 ~------------y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 224 N------------YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp H------------HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred H------------HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 8 58888888888555 556888888876 88999999999999999999999999999997 7998
Q ss_pred ChHHHH
Q 005125 560 YSKARL 565 (713)
Q Consensus 560 ~~~a~~ 565 (713)
....|.
T Consensus 292 r~~yW~ 297 (306)
T 3dra_A 292 RSNFWD 297 (306)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 777664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=183.88 Aligned_cols=233 Identities=12% Similarity=-0.023 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC------YHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 347 (713)
++++|+.+|.++ |.+|...|++++|+.+|++++.+.+. .+.++.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56778888999999999988887432 2568888899998999999999
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-cCHHHHHHHh
Q 005125 348 SHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-QRHQEAHDSY 426 (713)
Q Consensus 348 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~ 426 (713)
.+|++++. +.+.. |++..+ ..++..+|.+|... |++++|+.+|
T Consensus 98 ~~~~~Al~-l~~~~--------------------g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 98 DSLENAIQ-IFTHR--------------------GQFRRG---------------ANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHH-HHHHT--------------------TCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHc--------------------CCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 98888888 55443 333222 36788899999996 9999999999
Q ss_pred hccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005125 427 NKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506 (713)
Q Consensus 427 ~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 506 (713)
++++.+.|...... ....++..+|.+|..+|++++|+.+|++++++.|++...... ....+.++|.++..+
T Consensus 142 ~~Al~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~lg~~~~~~ 212 (292)
T 1qqe_A 142 ELAGEWYAQDQSVA----LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS-----LKDYFLKKGLCQLAA 212 (292)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH-----HHHHHHHHHHHHHHc
Confidence 99999877532110 125678999999999999999999999999999887543100 011233799999999
Q ss_pred ccHHHHHHHHHHHhccCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 507 SKYKEACYAYSEGLEHEAYNSVL-----LCNRAACRS--KLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 507 g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|++++|+.+|+++++++|..... +..++..+. ..+++++|+..|++++.++|.....+.
T Consensus 213 g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 213 TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999999999999976543 445566554 456788888888888887776544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=171.24 Aligned_cols=171 Identities=14% Similarity=0.108 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSN----------------KSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 321 (713)
.++.++..|..++..|++++|+.+|+++++.+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
++|+++.++..+|.+|...|++++|+.+|+++++ ++|++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~--------------------------------------- 122 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNL--------------------------------------- 122 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCH---------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCH---------------------------------------
Confidence 9999999999999999999999999999999999 888873
Q ss_pred hHHHHHHHHHHHHHccC--HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 402 APQVYALQAEALLRLQR--HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
.+++.+|.+|...|+ ...+...|++++...|. ..+++.+|.++...|++++|+.+|+++++++|+
T Consensus 123 --~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 123 --AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-----------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 788888888876654 56678888888765543 235778899999999999999999999999997
Q ss_pred CH
Q 005125 480 NK 481 (713)
Q Consensus 480 ~~ 481 (713)
..
T Consensus 190 ~~ 191 (208)
T 3urz_A 190 TE 191 (208)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-20 Score=184.24 Aligned_cols=232 Identities=12% Similarity=0.059 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSS------KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.+...|.+|...|++++|+.+|.+++++.+. .+.++.++|.+|..+|++++|+.+|++++.+.+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~---------- 108 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT---------- 108 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 4556688999999999999999999998532 257899999999999999999999999998643
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCC-----hHHHHHH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAREL-KRWNDLLKETQNVISFGADS-----APQVYAL 408 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~-----~~~~~~~ 408 (713)
..|++..+... +..++.++... |++++|+..|++++.+.|.. ...++..
T Consensus 109 ----~~g~~~~~a~~---------------------~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 109 ----HRGQFRRGANF---------------------KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp ----HTTCHHHHHHH---------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HcCCHHHHHHH---------------------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 34555443322 34556677775 99999999999999987753 1367889
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
+|.+|..+|++++|+.+|++++.+.|+.....+ ....++..+|.++..+|++++|+.+|++++.++|........
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-- 238 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQW---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES-- 238 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH--
Confidence 999999999999999999999998876432111 123478899999999999999999999999999987764421
Q ss_pred HHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005125 489 MAKAMASARLRGNLLF--KASKYKEACYAYSEGLEHEAYNSVLLCNRAACR 537 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 537 (713)
..+..++..+. ..+++++|+..|++++.++|....++..+-..+
T Consensus 239 -----~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 239 -----NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -----HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 11224555554 567899999999999999997766666555444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=188.56 Aligned_cols=303 Identities=11% Similarity=-0.050 Sum_probs=221.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHcCCHHHHH-----------HHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINS---SKATYR--SNK--SAALIGLGRQIEAL-----------VECKEA 319 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a 319 (713)
.....+.-...+...+++++|..+++++.+.-+ .+...+ +.+ .......+++..+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 344566667778889999999999999866432 244333 222 22223334444444 555553
Q ss_pred HHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005125 320 IRIDPCYHR------AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQN 393 (713)
Q Consensus 320 l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 393 (713)
- ..|.... .++.+|.++...|++++|+.+|++++. +.............+..++..+...|++++|+..+++
T Consensus 91 ~-~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 91 D-KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES-KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp H-HHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-hcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 2333322 345599999999999999999999998 6333222334557788999999999999999999999
Q ss_pred HHHcCCCC------hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 394 VISFGADS------APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 394 al~~~p~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
++.+.+.. ...++..+|.+|..+|++++|+.+|++++.+.+..... ...+.++.++|.+|..+|++++|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP----QLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99875433 23688899999999999999999999999886654221 124568999999999999999999
Q ss_pred HHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----CCCHHHHHHHHHH
Q 005125 468 KTAQDAAQI-----D-PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----AYNSVLLCNRAAC 536 (713)
Q Consensus 468 ~~~~~al~~-----~-p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~ 536 (713)
.+|++++++ + |....++. ++|.++..+|++++|+.+|++++++. |.....+..+|.+
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYF------------LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999994 4 44444444 79999999999999999999999884 3334446789999
Q ss_pred HHHcCC---HHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhC
Q 005125 537 RSKLGQ---YEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREI 579 (713)
Q Consensus 537 ~~~~g~---~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~ 579 (713)
+...|+ +++|+..++++ ...|....++. ++|+.+|++++++.
T Consensus 313 ~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999 88888888776 22222222222 67777777776653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-19 Score=175.07 Aligned_cols=194 Identities=17% Similarity=0.116 Sum_probs=143.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
..+|.++..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.+|..+|++++|+..|++++. ..|++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~- 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDP- 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCT-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCc-
Confidence 4566667777777777777777777777777777777776 67777777777777777777777777777 655431
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
T Consensus 87 -------------------------------------------------------------------------------- 86 (261)
T 3qky_A 87 -------------------------------------------------------------------------------- 86 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHcccHH
Q 005125 444 AGGAYLLIVRAQVYIA--------AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK-----AMASARLRGNLLFKASKYK 510 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~ 510 (713)
..+.+++.+|.++.. .|++++|+..|++++...|++..+......+. ....++.+|.++...|+++
T Consensus 87 -~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 87 -RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp -THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 112345555566655 88899999999999999998876654322211 1223457999999999999
Q ss_pred HHHHHHHHHhccCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChHH
Q 005125 511 EACYAYSEGLEHEAY---NSVLLCNRAACRSKL----------GQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 511 ~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++.+|+++.+
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999998 467999999999987 78888888888888888877543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=190.02 Aligned_cols=321 Identities=14% Similarity=0.047 Sum_probs=179.0
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC-CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS-GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRA 285 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~-~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 285 (713)
.+|++.|++++ ++|++......+ -.++.....+.. .....+..+++..+ .-.+|..+...|.|++|..+|+++
T Consensus 1002 ~EaieLLEKiv-l~~s~fs~n~~L--qnlLi~tAIkaD~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1002 NELIELLEKIV-LDNSVFSEHRNL--QNLLILTAIKADRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred HHHHHHHHHHH-cCCCcccccHHH--HHHHHHHHHHhChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 49999999999 555421111111 111222211111 22233333322222 233677777777777777777665
Q ss_pred HHh----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 286 IAI----------------------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEA 343 (713)
Q Consensus 286 l~~----------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 343 (713)
-.. ..+.+.+|+.+|.++...|++++|+..|.++ +++..|..+|.++.+.|++
T Consensus 1076 ~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1076 DVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCH
Confidence 200 1233455555556655566666666555553 4455555556666666666
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHH
Q 005125 344 EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAH 423 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 423 (713)
++|+++|..+.+ ..++.. .....+..+.+++++++ ++.|. ..+ +. ..+..+|..+...|+|++|+
T Consensus 1151 EEAIeyL~mArk-~~~e~~-------Idt~LafaYAKl~rlee-le~fI----~~~-n~-ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1151 EELVKYLQMARK-KARESY-------VETELIFALAKTNRLAE-LEEFI----NGP-NN-AHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHHHHh-hccccc-------ccHHHHHHHHhhcCHHH-HHHHH----hCC-CH-HHHHHHHHHHHhcCCHHHHH
Confidence 666655555555 333211 01124444444444442 22221 111 22 23344666666666666666
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
.+|.++- .|..+|.+|.++|++++|++++++| .+..+|. +.+.++
T Consensus 1216 ~~Y~kA~------------------ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWk------------ev~~ac 1260 (1630)
T 1xi4_A 1216 LLYNNVS------------------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK------------EVCFAC 1260 (1630)
T ss_pred HHHHhhh------------------HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHH------------HHHHHH
Confidence 6666541 3455666666666666666666665 3334454 456666
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH--------------HHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL--------------EAAI 569 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------------~~A~ 569 (713)
...|+|..|..+... +.. +++.+..++..|...|.+++|+.++++++.++|.+...+. .+++
T Consensus 1261 ve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666665553 322 4456668888999999999999999999999988776663 6778
Q ss_pred HHHHHHHHhCC-----CCHHHHHHHHHH
Q 005125 570 QDYEMLIREIP-----GNEEVGRALFEA 592 (713)
Q Consensus 570 ~~~~~al~~~p-----~~~~~~~~l~~~ 592 (713)
+.|...+.+.| ++...+..+.-.
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 88888777766 555555544333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=175.45 Aligned_cols=240 Identities=16% Similarity=0.067 Sum_probs=176.6
Q ss_pred HHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 005125 270 YNKARFEDALALYDRAIAI--------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRL 333 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 333 (713)
...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+|++++.+ +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888888888874 2556789999999999999999999999999988 36668899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL 413 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 413 (713)
|.+|...|++++|+.+|++++. +.... ...+......++..+|.+|
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~-~~~~~---------------------------------~~~~~~~~~~~~~~la~~~ 137 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE-IREKV---------------------------------LGKFHPDVAKQLNNLALLC 137 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH-HHHHH---------------------------------HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH-HHHHH---------------------------------cCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999998 42110 0000001137788899999
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI---------DPNNKEVI 484 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~ 484 (713)
...|++++|+.+|++++.+....... .......++..+|.+|...|++++|+.+|++++++ .+.....+
T Consensus 138 ~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 138 QNQGKAEEVEYYYRRALEIYATRLGP--DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 99999999999999998872111000 00124568999999999999999999999999987 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 485 KGVKMAKAMASARLRGNLLFK------ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
. .++..+.. ...+.++...++......|..+.++..+|.+|..+|++++|+.+|++++++.
T Consensus 216 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 216 M------------HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp H------------HHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred H------------HHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 24444443 3346666667776666677788999999999999999999999999999763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-17 Score=170.68 Aligned_cols=254 Identities=15% Similarity=0.046 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHH
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-----RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEA 367 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~ 367 (713)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++. +.+........
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHhcCcHHHH
Confidence 35677889999999999999999999999887552 3688999999999999999999999999 77665444455
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-------CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGA-------DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
...+..++..+...|++++|+..+++++...+ .....++..+|.++...|++++|+.++++++...+.....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ- 171 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-
Confidence 66678899999999999999999999998742 1234677889999999999999999999999877653221
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
....++..+|.++...|++++|..++++++.+.+. ....+.. .....++.++...|++++|...+++
T Consensus 172 ----~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 172 ----QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-------NANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp ----GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH-------HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 23467889999999999999999999999987433 2222211 0011355668899999999999999
Q ss_pred HhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 519 GLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 519 al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
++...+.. ...+..+|.++...|++++|+..+++++...+.
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 99887653 346789999999999999999999999887543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=161.35 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
.+...+|.+|...|++++|+.+|+++++++|+ ++.+++.+|.+|...|++++|+.+|+++++++|+++.+
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPN----------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 45566899999999999999999999999995 56689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASK--YKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
+. ++|.+++..|+ ...+...|++++...| ...+++++|.++..+|++++|+.+|+++++++|+..
T Consensus 125 ~~------------~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 125 NI------------FLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HH------------HHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 88 69999877764 5667888888775444 234688899999999999999999999999999854
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=181.48 Aligned_cols=292 Identities=13% Similarity=0.070 Sum_probs=226.9
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYD 283 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 283 (713)
.++|..+|+|+-..+ . .+...+...+ +.|.++.++. +.+.+|+.+|.++...|++++|+..|.
T Consensus 1065 yEEAf~IYkKa~~~~------~-------A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNT------S-------AVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHHHHHHcCCHH------H-------HHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 369999999974222 1 0112222222 5677777654 568999999999999999999999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 284 RAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 284 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
++ +++..|..+|.++.+.|+|++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|.. .++.
T Consensus 1130 KA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI~-----~~n~-- 1195 (1630)
T 1xi4_A 1130 KA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFIN-----GPNN-- 1195 (1630)
T ss_pred hc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHHh-----CCCH--
Confidence 86 78899999999999999999999999999998854 2334459999999999885 555532 2221
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh--HHh--
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY--YTK-- 439 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~-- 439 (713)
..+...|..+...|+|++|+..|.++ ..|..+|.+|.++|++++|++++++|.....=. ...
T Consensus 1196 -----ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1196 -----AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34567889999999999999999986 578888999999999999999999985543200 000
Q ss_pred -----------hhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHc
Q 005125 440 -----------LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL--FKA 506 (713)
Q Consensus 440 -----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~--~~~ 506 (713)
......+++.+..++..|...|.|++|+.++++++.+++.+...+. .+|.++ ++-
T Consensus 1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft------------ELaiLyaKy~p 1329 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT------------ELAILYSKFKP 1329 (1630)
T ss_pred hhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH------------HHHHHHHhCCH
Confidence 0111235666778899999999999999999999999999888886 456555 457
Q ss_pred ccHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 507 SKYKEACYAYSEGLEHEA-----YNSVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 507 g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
++..++++.|...+.+.| +++..|..+..+|.+-|+++.|+...-.
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 789999999999999887 7889999999999999999999954433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=195.01 Aligned_cols=199 Identities=11% Similarity=-0.071 Sum_probs=174.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 005125 287 AINSSKATYRSNKSAALIGLGRQIEALVECKEAI--------RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 358 (713)
..+|+++.+++..+ ...|++++|+..|++++ +.+|++..+++.+|.+|..+|++++|+..|+++++ .+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-RV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-cC
Confidence 45788888887777 78899999999999999 89999999999999999999999999999999999 88
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 359 p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
|++. .+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 464 p~~~-----------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--- 499 (681)
T 2pzi_A 464 GWRW-----------------------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--- 499 (681)
T ss_dssp CCCH-----------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---
T ss_pred cchH-----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 8873 78999999999999999999999999999995
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
++.+++++|.+|..+|++++ +.+|+++++++|++..++. ++|.++..+|++++|+..|++
T Consensus 500 -------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~------------~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 500 -------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF------------GLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp -------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHT
T ss_pred -------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH------------HHHHHHHHcCCHHHHHHHHHh
Confidence 45689999999999999999 9999999999999999887 799999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKA-VEDCTAA 553 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 553 (713)
+++++|++..+++++|.++...|+.+++ ...+++|
T Consensus 560 al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 560 VPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp SCTTSTTHHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred hcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 9999999999999999999887774444 3344433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=179.74 Aligned_cols=245 Identities=17% Similarity=0.086 Sum_probs=178.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++. +...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA-IREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHH
Confidence 4566789999999999999999999999999995 566788999999999999999999999999988 4211
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 361 DIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
. ...++.....++..+|.+|...|++++|+.+|++++.+......
T Consensus 102 ~---------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 146 (311)
T 3nf1_A 102 T---------------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-- 146 (311)
T ss_dssp H---------------------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred H---------------------------------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC--
Confidence 0 00000111367888999999999999999999999876422100
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--------DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 512 (713)
........++..+|.++...|++++|+.+|++++.+ .|....++. .+|.++...|++++|
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN------------NLASCYLKQGKFKQA 214 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH------------HHHHHHHHHTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH------------HHHHHHHHcCCHHHH
Confidence 000124668999999999999999999999999987 333333333 799999999999999
Q ss_pred HHHHHHHhccCCC---------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------
Q 005125 513 CYAYSEGLEHEAY---------N------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------ 565 (713)
Q Consensus 513 ~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------ 565 (713)
+.+|+++++..+. . ...+..++..+...+.+.+|+..+++++...|....++.
T Consensus 215 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 215 ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCH
Confidence 9999999976432 2 334555556667777888888899999988888777666
Q ss_pred HHHHHHHHHHHHhCCC
Q 005125 566 EAAIQDYEMLIREIPG 581 (713)
Q Consensus 566 ~~A~~~~~~al~~~p~ 581 (713)
++|+..|++++++.|+
T Consensus 295 ~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 295 EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8899999999988775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=165.66 Aligned_cols=215 Identities=10% Similarity=0.013 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCC
Q 005125 256 KLDPEELKFMGNEAYNKA--RFEDALALYDRAIAINSSKATYRSNKSAAL----IGL---GRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~p~~ 326 (713)
|++..+|+.++.++...| ++++++.++.+++..+|++..+|+.++.++ ... +++++++.++.++++.+|.+
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn 143 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC
Confidence 445567999999999999 999999999999999999999999999999 777 89999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHcC
Q 005125 327 HRAHHRLAMLYFRLGEAE--KAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR------WNDLLKETQNVISFG 398 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~ 398 (713)
..+|...+.++...|.++ ++++++.++++ .+|.+. .++..++.+....+. ++++++.+++++..+
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d~~N~------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TDLKNN------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC
Confidence 999999999999999998 99999999999 999984 455555555555555 677777777777777
Q ss_pred CCChHHHHHHHHHHHHHccCHHH-HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 005125 399 ADSAPQVYALQAEALLRLQRHQE-AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-I 476 (713)
Q Consensus 399 p~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~ 476 (713)
|.+. .+|+.++.++...|+..+ ...++.+++.+... ....+.++..++.+|.+.|+.++|+++|+.+.+ .
T Consensus 217 p~n~-SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 217 PQNP-STWNYLLGIHERFDRSITQLEEFSLQFVDLEKD-------QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp SSCH-HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT-------EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCCc-cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 7764 777777777777776444 33455555543310 013566666666666666666666666666665 5
Q ss_pred CCCCHHHHH
Q 005125 477 DPNNKEVIK 485 (713)
Q Consensus 477 ~p~~~~~~~ 485 (713)
+|-....|.
T Consensus 289 Dpir~~yW~ 297 (306)
T 3dra_A 289 NPIRSNFWD 297 (306)
T ss_dssp CGGGHHHHH
T ss_pred ChHHHHHHH
Confidence 666666655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=155.90 Aligned_cols=172 Identities=18% Similarity=0.157 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 418 (713)
..|++++|+.+|++++. ..|.+. .++..+|.++...|+
T Consensus 88 ~~~~~~~A~~~~~~~~~-~~~~~~-----------------------------------------~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE-ANPINF-----------------------------------------NVRFRLGVALDNLGR 125 (186)
T ss_dssp HHTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHh-cCcHhH-----------------------------------------HHHHHHHHHHHHcCc
Confidence 99999999999999999 777663 667777888888888
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
+++|+.++++++...|+ ...++..+|.++...|++++|+.+++++++.+|++..
T Consensus 126 ~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPN----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHhcCcc----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 88888888888877764 4557888899999999999999999999888877654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-17 Score=157.34 Aligned_cols=207 Identities=8% Similarity=-0.067 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR---AHH 331 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 331 (713)
+++.++.+|..++..|+|++|+..|+++++..|.+. .+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456677777777777777777777777777777653 56777777777777777777777777777776643 666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.+|.++...+.. .+ ..+..++.
T Consensus 83 ~~g~~~~~~~~~---------~~-------------------------------------------------~~~~~~~~ 104 (225)
T 2yhc_A 83 MRGLTNMALDDS---------AL-------------------------------------------------QGFFGVDR 104 (225)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhhhhh---------hh-------------------------------------------------hhhhccch
Confidence 777666654421 00 11222344
Q ss_pred HHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK 491 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 491 (713)
.+...|++++|+..|+++++..|+.... ..++..++.+....
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~P~~~~a-------~~a~~~l~~~~~~~------------------------------- 146 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGYPNSQYT-------TDATKRLVFLKDRL------------------------------- 146 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCTTCTTH-------HHHHHHHHHHHHHH-------------------------------
T ss_pred hhcCcHHHHHHHHHHHHHHHHCcCChhH-------HHHHHHHHHHHHHH-------------------------------
Confidence 5555666777777777777766653221 11111111111000
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 492 AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS---VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 492 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
......+|.+++..|++++|+..|+++++..|+++ .+++.+|.+|.++|++++|+..++++....|++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01112689999999999999999999999999885 6799999999999999999999999999888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=153.71 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
.++..+|.++...|++++|+.++++++...|+ ...++..+|.++...|++++|+.+|++++...|.+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD----------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 44445555555555555555555555554442 34466777888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+. .+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.+++++++++|++..
T Consensus 113 ~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 113 RF------------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HH------------HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 76 58888888888888888888888888888888888888888888888888888888888777643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=157.16 Aligned_cols=199 Identities=13% Similarity=-0.026 Sum_probs=144.4
Q ss_pred chhhhhcCCC--CchhhhHhh---cCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Q 005125 235 VMGNIVKQPS--GEFPQCISS---LNKLD---PEELKFMGNEAYNKARFEDALALYDRAIAINSSKAT---YRSNKSAAL 303 (713)
Q Consensus 235 ~lg~~~~~~~--~~a~~~~~~---~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~ 303 (713)
.+|..+...| ++|+..++. ..|.+ +.+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 4677777777 668888887 45655 479999999999999999999999999999999864 889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc
Q 005125 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR 383 (713)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 383 (713)
...+.. ....+..++..+...|++++|+..|++++. ..|++........ ......
T Consensus 89 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~P~~~~a~~a~~---~l~~~~----- 143 (225)
T 2yhc_A 89 MALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVR-GYPNSQYTTDATK---RLVFLK----- 143 (225)
T ss_dssp HHHHC------------------------------CCHHHHHHHHHHHHHHT-TCTTCTTHHHHHH---HHHHHH-----
T ss_pred Hhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHH-HCcCChhHHHHHH---HHHHHH-----
Confidence 876532 123355667777788888899999999888 8888753221110 000000
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCH
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRF 463 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 463 (713)
.. .......+|.+|...|++++|+..|+++++..|+... ...+++.+|.+|..+|++
T Consensus 144 --~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 144 --DR--------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA-------TRDALPLMENAYRQMQMN 200 (225)
T ss_dssp --HH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH-------HHHHHHHHHHHHHHTTCH
T ss_pred --HH--------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc-------cHHHHHHHHHHHHHcCCc
Confidence 00 0134456799999999999999999999998886432 346899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 005125 464 EDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~ 481 (713)
++|+..++++....|++.
T Consensus 201 ~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHhhCCCch
Confidence 999999999998888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=159.40 Aligned_cols=248 Identities=15% Similarity=0.072 Sum_probs=173.0
Q ss_pred HHHhcCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 269 AYNKARFE-DALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 269 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
....|++. +|+.++.+++.++|++..+|+.++.++..++. +++++.++..++..+|.+..+|...+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567765 78999999999999999999999999988776 68999999999999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 338 FRLGE--AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR-WNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 338 ~~~g~--~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
..+++ +++++.++.++++ .+|.+. .++..++.+....+. ++++++.+.+++..+|.+. .+|..++.++.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~-~dprNy------~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~-SAW~~R~~ll~ 190 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLE-ADERNF------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSWHYRSCLLP 190 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHH-hCCCCH------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHH
Confidence 99984 8999999999999 898884 444444444444454 3555555555555555554 45555555444
Q ss_pred HccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMA 494 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 494 (713)
.+.....+ +. . +. ...+.++++++++.+++..+|++..+|+++
T Consensus 191 ~l~~~~~~-----------~~--~---------------~~--~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~------- 233 (331)
T 3dss_A 191 QLHPQPDS-----------GP--Q---------------GR--LPENVLLKELELVQNAFFTDPNDQSAWFYH------- 233 (331)
T ss_dssp HHSCCC----------------------------------C--CCHHHHHHHHHHHHHHHHHSTTCHHHHHHH-------
T ss_pred Hhhhcccc-----------cc--c---------------cc--cchHHHHHHHHHHHHHHHhCCCCHHHHHHH-------
Confidence 43221000 00 0 00 001458999999999999999999999852
Q ss_pred HHHHHHHHHHH----------cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCh
Q 005125 495 SARLRGNLLFK----------ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRS---KLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 495 ~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
.+.+... .+.++++++++.+++++.|++...+..++.+.. ..|..++...++.+.+++||-..
T Consensus 234 ----r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 234 ----RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp ----HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred ----HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 2222222 256899999999999999999665555544332 24556666666666666666554
Q ss_pred HHHH
Q 005125 562 KARL 565 (713)
Q Consensus 562 ~a~~ 565 (713)
.-|.
T Consensus 310 ~~y~ 313 (331)
T 3dss_A 310 AYLD 313 (331)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=176.37 Aligned_cols=280 Identities=12% Similarity=0.060 Sum_probs=152.3
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDR 284 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 284 (713)
++|++++++. +.+ ..|. .+|..+.+.+ ++|+..+.+ ..++..+...+..+...|+|++|+.+++.
T Consensus 20 d~A~~fae~~----~~~---~vWs----~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 20 DRAYEFAERC----NEP---AVWS----QLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC----CCh---HHHH----HHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4899999988 211 2333 5889998888 778888865 45777999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 285 AIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 285 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
+.+..++ +.+...++.+|.++|++.++.++++. |+ ..+|..+|..+...|+|++|..+|.++-
T Consensus 87 ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------- 149 (449)
T 1b89_A 87 ARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS---------- 149 (449)
T ss_dssp -----------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHTT----------
T ss_pred HHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh----------
Confidence 9886444 77788999999999999999988853 43 4699999999999999999999999763
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
.+..++..+..+|+|++|++.++++ . .+..|...+.++...|+++.|..+... +...|+.
T Consensus 150 -----n~~~LA~~L~~Lg~yq~AVea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-------- 209 (449)
T 1b89_A 150 -----NFGRLASTLVHLGEYQAAVDGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-------- 209 (449)
T ss_dssp -----CHHHHHHHHHTTTCHHHHHHHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--------
T ss_pred -----hHHHHHHHHHHhccHHHHHHHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--------
Confidence 3678899999999999999999999 2 258899999999999999999888886 4466654
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHhcc
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL--FKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al~~ 522 (713)
+..+..+|.+.|++++|+.++++++.+++.+...+. .+|.++ ++.++..++++.|...+.+
T Consensus 210 -----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft------------el~il~~ky~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 210 -----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFT------------ELAILYSKFKPQKMREHLELFWSRVNI 272 (449)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH------------HHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred -----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH------------HHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 334788899999999999999999999999999888 456555 5678999999999999999
Q ss_pred CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 523 EA-----YNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 523 ~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
.| +++..|..+..+|.+-++++.|+...-..
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 88 88999999999999999999999865543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=156.44 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005125 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEA 343 (713)
Q Consensus 264 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 343 (713)
.+|.++...|++++|+..|++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36778888899999999999999988888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccH
Q 005125 344 EKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 344 ~~A~~~~~~al~~~~p~~~ 362 (713)
++|+.+|+++++ ++|++.
T Consensus 82 ~~A~~~~~~al~-~~p~~~ 99 (150)
T 4ga2_A 82 DKAVECYRRSVE-LNPTQK 99 (150)
T ss_dssp HHHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHHHHHHH-hCCCCH
Confidence 999999999999 888874
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-17 Score=169.94 Aligned_cols=294 Identities=14% Similarity=0.008 Sum_probs=209.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH----HcCCHHHHH---------HHHHHHHHhCCC-----
Q 005125 267 NEAYNKARFEDALALYDRAIAINS---SKATYRSNKSAALI----GLGRQIEAL---------VECKEAIRIDPC----- 325 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~~p~----- 325 (713)
..+...+++++|..+++++....+ .+...+...+.... ..+.+..+. ..++++-.....
T Consensus 20 y~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l 99 (378)
T 3q15_A 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLL 99 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHH
Confidence 334789999999999998765422 23443322222211 112222222 344433221110
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD----- 400 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----- 400 (713)
....++.+|..+...|++++|+.+|++++. +.+...........+..++..+...|+++.|+..+++++.+.+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 123677899999999999999999999998 65433333455677889999999999999999999999987543
Q ss_pred -ChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 005125 401 -SAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ---- 475 (713)
Q Consensus 401 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 475 (713)
....++..+|.+|...|++++|+.+|++++.+.+...... ..+.++.++|.+|..+|++++|+.+|++++.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR----FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1246788999999999999999999999998755322111 2466899999999999999999999999999
Q ss_pred -hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCC---HHHH
Q 005125 476 -IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----AYNSVLLCNRAACRSKLGQ---YEKA 546 (713)
Q Consensus 476 -~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A 546 (713)
.+|....++. ++|.++...|++++|+.+|++++++. +.....+..++.++...|+ +.+|
T Consensus 255 ~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 255 KVPDLLPKVLF------------GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HCGGGHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred hCChhHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5555544444 79999999999999999999999884 3345567788899999999 8888
Q ss_pred HHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHh
Q 005125 547 VEDCTAALIVMPSYSKARL------------EAAIQDYEMLIRE 578 (713)
Q Consensus 547 ~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~ 578 (713)
+..+++. ...|.....+. ++|+.+|+++++.
T Consensus 323 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 323 LSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888762 11111111211 7777777777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=153.19 Aligned_cols=136 Identities=13% Similarity=0.013 Sum_probs=121.1
Q ss_pred HHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 408 LQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGV 487 (713)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 487 (713)
.||.++...|++++|+..+++++...|+. +..++.+|.+|...|++++|+.+|+++++++|+++.+|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~-- 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR-- 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 36888899999999999999999998864 346788999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHH
Q 005125 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED-CTAALIVMPSYSKARL 565 (713)
Q Consensus 488 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~ 565 (713)
.+|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|... ++++++++|+++.++.
T Consensus 70 ----------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 70 ----------FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred ----------HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 6999999999999999999999999999999999999999999999887765 5899999998877654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=170.05 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=171.7
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIG-LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
..|++++|..+++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4688999999999999876642 112 58999999999886 5688899999999999
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc
Q 005125 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429 (713)
Q Consensus 350 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (713)
|.+++. +.+.. ++...+ ..++..+|.+|..+|++++|+.+|+++
T Consensus 59 ~~~al~-~~~~~--------------------~~~~~~---------------a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 59 YLQEAE-AHANN--------------------RSLFHA---------------AKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHH-HHHHT--------------------TCHHHH---------------HHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHH-HHHHc--------------------CCHHHH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999998 54432 222111 257777889999999999999999998
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 509 (713)
+.+.+..... ...+.++.++|.+|.. |++++|+.+|++++.+.+....... ...++.++|.++..+|+|
T Consensus 103 l~l~~~~g~~----~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 103 SVMYVENGTP----DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ------AAELIGKASRLLVRQQKF 171 (307)
T ss_dssp HHHHHTTTCH----HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCH----HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH------HHHHHHHHHHHHHHcCCH
Confidence 8775432110 0235688899999988 9999999999999988765321111 123445899999999999
Q ss_pred HHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 510 KEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 510 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++|+.+|++++.+.|.+ ..++.++|.++..+|++++|+.+|++++ ++|.+.....
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 99999999999886643 3478889999999999999999999999 9998765443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=143.51 Aligned_cols=108 Identities=26% Similarity=0.339 Sum_probs=105.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|+.++++..+|..++..|+|++|+.+|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|+++++ ++|++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~-l~P~~~ 115 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ-VDPSNE 115 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-HCcCCH
Confidence 9999999999999999999999 999985
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=144.81 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=115.5
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAM 493 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 493 (713)
..++++-.+-..+++++.++|++ +.+++.+|.++...|++++|+.+|++++.++|+++.+|.
T Consensus 13 ~~l~~~~~~~~~l~~al~l~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~-------- 74 (151)
T 3gyz_A 13 TAVIDAINSGATLKDINAIPDDM----------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM-------- 74 (151)
T ss_dssp HHHHHHHHTSCCTGGGCCSCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--------
T ss_pred HHHHHHHHCCCCHHHHhCCCHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------
Confidence 34444455567789999999975 558899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 494 ASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 494 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
++|.++..+|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus 75 ----~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 75 ----GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ----HHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ----HHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7999999999999999999999999999999999999999999999999999999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=159.57 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=162.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAIN--------SSKATYRSNKSAALIGLGRQIEALVECKEAIRI------ 322 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 322 (713)
..+.++..+|.++...|++++|+.+|+++++.. |....++..+|.++...|++++|+.+|++++.+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 345679999999999999999999999999873 556789999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 323 --DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN-----QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 323 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
+|....++..+|.+|...|++++|+.+|++++. +. ++++ .....+..++.++...|++++|+..+++++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-IYATRLGPDDP---NVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSCTTCH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCCH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788999999999999999999999999999 61 1121 234677889999999999999999999999
Q ss_pred HcC---------CCChHHHHHHHHHHHHHcc------CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 396 SFG---------ADSAPQVYALQAEALLRLQ------RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 396 ~~~---------p~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
... +.. ..++..++..+...+ .+.++...++......|. .+.++..+|.+|...
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 197 TRAHEKEFGSVNGDN-KPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT----------VNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHSSSCCSSC-CCHHHHHHHHHHTTCCCCC------------CCCCCCHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCcchhH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH----------HHHHHHHHHHHHHHc
Confidence 862 222 245566666665543 355566666666555553 455889999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 005125 461 GRFEDAVKTAQDAAQID 477 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~ 477 (713)
|++++|+.+|++++++.
T Consensus 266 g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 266 GKLEAAHTLEDCASRNR 282 (283)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=152.60 Aligned_cols=233 Identities=10% Similarity=-0.009 Sum_probs=186.1
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Q 005125 304 IGLGRQI-EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELK 382 (713)
Q Consensus 304 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 382 (713)
...|.+. +|+..+.+++.++|++..+|+..+.++..++.. ..|+. ...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~-------------~~~~~------------------~~~ 88 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE-------------KSPEE------------------SAA 88 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH-------------SCHHH------------------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc-------------ccchh------------------hhH
Confidence 3456665 799999999999999999999999998776541 01100 012
Q ss_pred cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccC--HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 383 RWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR--HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
.+++++..+..++..+|.+. .+|..++.++..+++ +++++.++.+++..+|. +..+|..++.++...
T Consensus 89 ~l~~EL~~~~~~L~~~PKny-~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr----------Ny~AW~~R~~vl~~l 157 (331)
T 3dss_A 89 LVKAELGFLESCLRVNPKSY-GTWHHRCWLLSRLPEPNWARELELCARFLEADER----------NFHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHh
Confidence 34455556666666666664 889999999999984 89999999999999985 555899999999999
Q ss_pred CC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHhccCCC
Q 005125 461 GR-FEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA--------------SKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 461 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~ 525 (713)
|. ++++++++.++++.+|.+..+|. .++.++... +.++++++++.+++..+|+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N~SAW~------------~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~ 225 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSNYSSWH------------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 225 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCCHHHHH------------HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred CcCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 99 69999999999999999999998 577777766 6799999999999999999
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCChHHHH---------------HHHHHHHHHHHHhC
Q 005125 526 NSVLLCNRAACRSKL-----------GQYEKAVEDCTAALIVMPSYSKARL---------------EAAIQDYEMLIREI 579 (713)
Q Consensus 526 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~---------------~~A~~~~~~al~~~ 579 (713)
+..+|+.+..++... +.++++++.+++++++.|++...+. ++....+.+++++|
T Consensus 226 d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 226 DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 999998666665554 4589999999999999999865543 56677888888888
Q ss_pred CCCHHHHHHHH
Q 005125 580 PGNEEVGRALF 590 (713)
Q Consensus 580 p~~~~~~~~l~ 590 (713)
|.....+..+.
T Consensus 306 p~r~~~y~d~~ 316 (331)
T 3dss_A 306 PMRAAYLDDLR 316 (331)
T ss_dssp GGGHHHHHHHH
T ss_pred cchhhHHHHHH
Confidence 87776655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-16 Score=155.49 Aligned_cols=242 Identities=12% Similarity=-0.015 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+++..+.......+..++|+.++.++|.++|++..+|+.++.++..+| .+++++.++++++..+|++..+|+..+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455556666666677789999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 338 FRL-G-EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 338 ~~~-g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
..+ + +++++++++.+++. .+|.+. .+|..++.++..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~-~dpkNy-----------------------------------------~AW~~R~wvl~~ 171 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLL-PDPKNY-----------------------------------------HTWAYLHWLYSH 171 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTS-SCTTCH-----------------------------------------HHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHH
Confidence 998 8 89999999999999 898884 667777777777
Q ss_pred ccCHH--------HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCC
Q 005125 416 LQRHQ--------EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR-------FEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 416 ~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p~~ 480 (713)
.+.++ +++++++++++.+|. +..+|..++.++...++ ++++++++++++.++|++
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp~----------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDGR----------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hccccccchhhHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 77766 999999999998885 55589999999999987 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHhccC------CCCHHHHHHHH
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKY--------------------KEACYAYSEGLEHE------AYNSVLLCNRA 534 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la 534 (713)
..+|.. +..++...|+- .+-.+.....+... +..+.++..|+
T Consensus 242 ~SaW~Y------------lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 242 VSAWNY------------LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHH------------HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHH------------HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 999984 55555555442 33333333333332 46788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCChHHH
Q 005125 535 ACRSKLGQYEKAVEDCTAAL-IVMPSYSKAR 564 (713)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~ 564 (713)
.+|...|+.++|++.|+... +.||-....|
T Consensus 310 d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 99999999999999999986 5677655444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=152.62 Aligned_cols=165 Identities=13% Similarity=-0.008 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~- 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH- 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH-
Confidence 4555555555555555555555555555555555555555555555555555555555555555 44444333322211
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 420 (713)
..+...+|+..+++++..+|++. .+++.+|.++...|+++
T Consensus 86 ---------------------------------------~~~~~~~a~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~ 125 (176)
T 2r5s_A 86 ---------------------------------------QQAAESPELKRLEQELAANPDNF-ELACELAVQYNQVGRDE 125 (176)
T ss_dssp ---------------------------------------HHHTSCHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------hhcccchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHH
Confidence 11111224455555555555553 78888999999999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
+|+..|+++++..|+. .+..++..+|.++...|+.++|+..|++++.
T Consensus 126 ~A~~~~~~~l~~~p~~--------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 126 EALELLWNILKVNLGA--------QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCTTT--------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc--------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999988853 2345788899999999999999999998875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=155.76 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNK-------SAALIGLGRQIEALVECKEAIRIDPCYHRA 329 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 329 (713)
.++..|..+ ..+++.+|+.+|.++++++|+..++|.++ +.++..++++.+++..+++++.+.|....+
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 355555554 46777777777777777777777777777 677777777777777777777766654333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=136.14 Aligned_cols=108 Identities=22% Similarity=0.233 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..+..+|..|++.|++++|+.+|+++++++|.++.++. ++|.++..+|++++|+..|+++++++|+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYS------------NRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 4568899999999999999999999999999999999988 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++.+|+++|.+|..+|++++|+..|+++++++|++..++.
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 9999999999999999999999999999999999877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=159.65 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=137.9
Q ss_pred hHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 250 CISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA 329 (713)
Q Consensus 250 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 329 (713)
++....|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 33345577777788888888888888888888888888888888888888888888888888888888888888866666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 409 (713)
+...+..+...++.++|+..|++++. .+|++ +.+++.+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~-~~P~~-----------------------------------------~~~~~~l 225 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVA-ENPED-----------------------------------------AALATQL 225 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH-HCTTC-----------------------------------------HHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHh-cCCcc-----------------------------------------HHHHHHH
Confidence 66666667777777777777777777 77766 3778888
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 475 (713)
|.+|...|++++|+..|+++++..|++ .+..++..++.++...|+.++|+..|++++.
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~--------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTA--------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTG--------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccc--------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 888888888888888888888888864 2355788888899889998899888888875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=145.64 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcC
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN--SVLLCNRAACRSKLG 541 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 541 (713)
.+|+..|+++++.+|+++.++. .+|.++...|++++|+..|+++++.+|+. +.++.++|.++..+|
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELAC------------ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 4578899999999999988887 68999999999999999999999999875 668999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005125 542 QYEKAVEDCTAALI 555 (713)
Q Consensus 542 ~~~~A~~~~~~al~ 555 (713)
+.++|+..|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999998875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-16 Score=154.23 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 289 NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++. .+|+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~~------ 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDTR------ 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSHH------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcchH------
Confidence 4777777778888888888888888888888888888888888888888888888888888877777 666431
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
.
T Consensus 186 -----------------------------------~-------------------------------------------- 186 (287)
T 3qou_A 186 -----------------------------------Y-------------------------------------------- 186 (287)
T ss_dssp -----------------------------------H--------------------------------------------
T ss_pred -----------------------------------H--------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN-- 526 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 526 (713)
.+...+..+...++.++|+..|++++..+|++..++. ++|.++...|++++|+..|+++++.+|++
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~------------~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT------------QLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH------------HHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 2223344555666667777777777777777777776 57777777788888888888777777776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
..++.+++.++..+|+.++|+..|++++.
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 77777788888888887777777777764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-18 Score=173.62 Aligned_cols=253 Identities=12% Similarity=0.033 Sum_probs=96.9
Q ss_pred CchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 245 GEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324 (713)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 324 (713)
++|.+++++. +++++|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..+
T Consensus 20 d~A~~fae~~--~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~ 92 (449)
T 1b89_A 20 DRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC--CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 5677777775 33458888888888888888888888764 3455778888888888888888888888887544
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 005125 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQ 404 (713)
Q Consensus 325 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 404 (713)
+ +.+...++.+|.++|+++++.++++. |+. ..+...|..+...|.|++|...|.++ .
T Consensus 93 ~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~-------~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 93 E-SYVETELIFALAKTNRLAELEEFING------PNN-------AHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------CHHHHTTTTTC------C-----------------------CTTTHHHHHHHT---------T
T ss_pred c-chhHHHHHHHHHHhCCHHHHHHHHcC------CcH-------HHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 4 66777888888888888887766532 322 25667777777777777777777765 3
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVI 484 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 484 (713)
.|..+|.++.++|++++|++.|+++. ++..|.....++...|+++.|..+... +..+|++ .
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~---------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l 210 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKAN---------------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---L 210 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT---------------CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---H
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcC---------------CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---H
Confidence 56667777777777777777777772 233566667777777777777665554 2233322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK--LGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 558 (713)
. .+...|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..++++.|...+.+.|
T Consensus 211 ~------------~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 211 E------------ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp H------------HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred H------------HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 2 356677777777777777777777777777777777776653 4455666666655555544
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=130.55 Aligned_cols=100 Identities=23% Similarity=0.408 Sum_probs=90.5
Q ss_pred ceeecchhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+... ..+++.|++ ||+|+.+.|.++++++.++++.|+.||+|+.++++..++|.++|||++|+
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~ 81 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEE
Confidence 45567778899887653 456667999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|+.++++.|+++++|.++|++++
T Consensus 82 ~G~~v~~~~G~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 82 NGQKLDSLSGANYDKLLELVEKNK 105 (105)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHHC
T ss_pred CCEEEEEEeCcCHHHHHHHHHhcC
Confidence 999999999999999999999873
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=148.86 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=175.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHH
Q 005125 296 RSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL-------AMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEAL 368 (713)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 368 (713)
++..|.-+ .-+++.+|...|.+++.++|+..++|..+ +.++...+++.+++..+.+.+. +.|......
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l~a~--- 84 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTLNAR--- 84 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGGCCE---
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhhhhh---
Confidence 34445555 57999999999999999999999999999 8999999999999999999999 888762100
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 369 HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
+.+ .|-|. -++.--.....++..++.++...|+|++|.+.|..++...|++ .
T Consensus 85 ---~~~------~g~y~--------~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----------~- 136 (282)
T 4f3v_A 85 ---IAI------GGLYG--------DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----------L- 136 (282)
T ss_dssp ---EEC------CTTTC--------CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH----------H-
T ss_pred ---hcc------CCccc--------ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch----------H-
Confidence 000 00000 0000011223677778999999999999999999999887753 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--C
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN--KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE--A 524 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p 524 (713)
..+.+|.+++..+++++|+.+|++++...+.. ..++. .+|.++..+|++++|+.+|++++... |
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~------------~LG~al~~LG~~~eAl~~l~~a~~g~~~P 204 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV------------AHGVAAANLALFTEAERRLTEANDSPAGE 204 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHhcCCCCc
Confidence 67889999999999999999999876643111 12333 79999999999999999999998654 5
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 525 Y-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 525 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
. .+++++++|.++.++|+.++|...|++++..+|+ ..++
T Consensus 205 ~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 205 ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 5 5679999999999999999999999999999998 5443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=139.64 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=104.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|+++++++.+|..++..|++++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|+++.+|+++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|++++. +.|+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~-l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ-HSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCHH
Confidence 9999999999999999999999 998864
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=155.06 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=140.4
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 345 (713)
.+++++|+.+|.++ |.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 46777777777765 456677777777777777777764422 4567777777777777777
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHccCHH
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS-----APQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~ 420 (713)
|+.+|++++. +.+...........+..++.++.. |++++|+..|++++.+.+.. ...++..+|.+|..+|+++
T Consensus 95 A~~~~~~Al~-l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 95 AVQYIEKASV-MYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 7777777777 543322222334556667777766 77777777777777765432 2468889999999999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
+|+.+|++++.+.++..... ....++..+|.++..+|++++|+.+|++++ ++|.....
T Consensus 173 ~A~~~~~~al~~~~~~~~~~----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYP----TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHHcCChh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 99999999998876542211 134578899999999999999999999999 99976543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=169.52 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=127.9
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYK 351 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 351 (713)
.|++++|+.+|+++++.+|++..+++.+|.++...|++++|+.+|+++++++|++..++..+|.+|..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcccc
Q 005125 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPK 431 (713)
Q Consensus 352 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (713)
++++ ++|++. .++..+|.+|...|++++|+.+|+++++
T Consensus 82 ~al~-~~p~~~-----------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 82 QASD-AAPEHP-----------------------------------------GIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp HHHH-HCTTCH-----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHh-cCCCCH-----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999 888763 6778888888899999999999998888
Q ss_pred CChhhHHhhhcccCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 432 FCLEYYTKLFGLAGGAYLLIVRAQVYIAA---GRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
..|+ +..++..+|.++... |++++|+..|+++++.+|.+...+.
T Consensus 120 ~~p~----------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 120 LLPE----------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HCTT----------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred hCCC----------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHH
Confidence 8774 455788889999999 9999999999999999988877665
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=133.41 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=86.0
Q ss_pred chhHHHHHhhcCC-ceEEEeec--C--chhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPG-MAVVLFCS--K--AEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~-~~vv~f~~--c--g~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+...+ .++++|++ | |+|+++.|++++++++| +.+.|++||+|+.+.++.+|+|+++||+++|++|+
T Consensus 21 t~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~ 100 (137)
T 2qsi_A 21 DEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPER 100 (137)
T ss_dssp CTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCE
T ss_pred CHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 3468888776665 88999999 8 99999999999999999 56999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.++++.|. +.++|.++|+++
T Consensus 101 ~v~~~vG~~~k~~l~~~l~~~ 121 (137)
T 2qsi_A 101 TLGVIAKIQDWSSYLAQIGAM 121 (137)
T ss_dssp EEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 99999999 889999999865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=152.55 Aligned_cols=198 Identities=16% Similarity=0.209 Sum_probs=154.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|.++..++.+|..++..|++++|+.+|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+|..+|++++|+.+|++++. ++|++..... ..............|.. ......+... .+...++.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~i~~~l~~l~-- 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS-LAKEQRLNFG---DDIPSALRIAKKKRWNS------IEERRIHQES-ELHSYLTRLI-- 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HHHHTTCCCC---SHHHHHHHHHHHHHHHH------HHHTCCCCCC-HHHHHHHHHH--
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCccchhhHH---HHHHHHHHHHHHHHHHH------HHHHHHhhhH-HHHHHHHHHH--
Confidence 99999999999999999999 8886521000 00111111111122222 2223444443 5555555554
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA-GRFEDAVKTAQDAAQI 476 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 476 (713)
.|++++|++.|+++++..|++. .....++.++... +.+++|...|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDG----------HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHH----------HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchh----------hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7999999999999999988643 2444556666655 7789999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=166.91 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=136.2
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA 460 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 460 (713)
.|++++|+..++++++.+|++. .++..+|.+|...|++++|+.+|++++++.|+ ++.++..+|.+|..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF-VAWLMLADAELGMGDTTAGEMAVQRGLALHPG----------HPEAVARLGRVRWTQ 70 (568)
T ss_dssp -------------------CCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----------CHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHC
Confidence 4788999999999999999985 89999999999999999999999999999985 566899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 540 (713)
|++++|+.+|+++++++|++..++. ++|.++...|++++|++.|+++++++|++..++.++|.++..+
T Consensus 71 g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAPEHPGIAL------------WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998887 7999999999999999999999999999999999999999999
Q ss_pred ---CCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 541 ---GQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 541 ---g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|++++|+..|+++++.+|++...+.
T Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 139 CDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp TCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred hccccHHHHHHHHHHHHhcCCcccChHH
Confidence 9999999999999999999877765
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=133.74 Aligned_cols=99 Identities=9% Similarity=0.110 Sum_probs=89.4
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+.+..+|.+.+. ..+.+++.|++ ||+|+++.|+|+++++++++ +.|++||+|+.|+++..++|.++|||+||
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 566788899988774 46678888999 99999999999999999964 99999999999999999999999999999
Q ss_pred ECCeEe--e-------eecCC-C-HHHHHHHHHhh
Q 005125 688 KNGSRV--K-------EIPGH-Q-CELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~--~-------~~~g~-~-~~~~~~~~~~~ 711 (713)
++|+.+ + ++.|+ + .++|.++|+.+
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 999998 6 89999 4 99999999875
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=133.34 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=86.3
Q ss_pred chhHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCC-C-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFP-S-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p-~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+...+.++++|++ ||+|+++.|+|++++++|+ . +.|++||+|+.+.++.+|||+++||+++|++|+
T Consensus 23 t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~ 102 (140)
T 2qgv_A 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGN 102 (140)
T ss_dssp CHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTE
T ss_pred CHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 457888888777788888866 8999999999999999995 5 899999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++++.|+ +.++|.++|+++.
T Consensus 103 ~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 103 YRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEecCCCHHHHHHHHHHHh
Confidence 99999999 8899999998763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-15 Score=139.81 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..++.+|.++...|++++|+..|++++.. .+.+++.+|.+|...|++++|+.+|++++.++|++..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 45677899999999999999999999632 35589999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCH----------------HHHHHHHHHHHHcCCHHHHH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS----------------VLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~ 547 (713)
+. ++|.++...|++++|+..|+++++..|.+. .+++++|.+|..+|++++|+
T Consensus 74 ~~------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 74 YF------------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH------------HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 87 799999999999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 005125 548 EDCTAALIVMPSYSKARLEAAIQDYEMLI 576 (713)
Q Consensus 548 ~~~~~al~~~p~~~~a~~~~A~~~~~~al 576 (713)
..|+++++++|++.....+.|+..+++..
T Consensus 142 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 170 (213)
T 1hh8_A 142 EQLALATSMKSEPRHSKIDKAMECVWKQK 170 (213)
T ss_dssp HHHHHHHTTCCSGGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCcccccchHHHHHHHHHhcc
Confidence 99999999999987777777777665443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=151.33 Aligned_cols=198 Identities=13% Similarity=0.084 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 290 SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 290 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
|.++..+..+|.++...|++++|+..|++++.++|+++.++.++|.+|..+|++++|+..|++++. ++|++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~------- 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSV------- 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTCH-------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCH-------
Confidence 567889999999999999999999999999999999999999999999999999999999999999 888773
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL 449 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (713)
.+++.+|.+|..+|++++|+..|++++.+.|+....+ ...+
T Consensus 73 ----------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----~~~~ 113 (281)
T 2c2l_A 73 ----------------------------------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF-----GDDI 113 (281)
T ss_dssp ----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-----CSHH
T ss_pred ----------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhH-----HHHH
Confidence 7888889999999999999999999999888653221 1111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVL 529 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 529 (713)
+..+ +..++...........+.+..... .++.++ .|++++|++.|+++++.+|++...
T Consensus 114 ~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~------------~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~ 171 (281)
T 2c2l_A 114 PSAL--------RIAKKKRWNSIEERRIHQESELHS------------YLTRLI--AAERERELEECQRNHEGHEDDGHI 171 (281)
T ss_dssp HHHH--------HHHHHHHHHHHHHTCCCCCCHHHH------------HHHHHH--HHHHHHHHTTTSGGGTTTSCHHHH
T ss_pred HHHH--------HHHHHHHHHHHHHHHHhhhHHHHH------------HHHHHH--HHHHHHHHHHHHhhhccccchhhh
Confidence 1111 122233333344456677777665 244443 799999999999999999998888
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005125 530 LCNRAACRSKL-GQYEKAVEDCTAALIV 556 (713)
Q Consensus 530 ~~~la~~~~~~-g~~~~A~~~~~~al~~ 556 (713)
...++.++... +.+++|...|.++.+.
T Consensus 172 ~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 172 RAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888877776 6788888888877664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-17 Score=167.58 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHh-----hhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTK-----LFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
.++..+|.+|...|++++|+.+|++++.+.|+.... .......+.+++++|.+|..+|++++|+.+|+++++++|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566667777777777777777777777776653100 000001256899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKA-VEDCTAALIV 556 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 556 (713)
++..++. ++|.++..+|++++|+.+|+++++++|++..++.+++.++..+|++++| ...|++++..
T Consensus 228 ~~~~a~~------------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 228 NNEKGLS------------RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp TCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 7999999999999999999999999999999999999999999999999 5577776653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=133.73 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=110.2
Q ss_pred HHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005125 423 HDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL 502 (713)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~ 502 (713)
-..|++++.+.|+. ...++.+|.++...|++++|+..|++++..+|+++.+|. .+|.+
T Consensus 7 ~~~~~~al~~~p~~----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~ 64 (148)
T 2vgx_A 7 GGTIAMLNEISSDT----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL------------GLGAC 64 (148)
T ss_dssp CCSHHHHTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHH
T ss_pred hhhHHHHHcCCHhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHH------------HHHHH
Confidence 34677888888864 557889999999999999999999999999999999987 69999
Q ss_pred HHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 503 LFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 503 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+...|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++..
T Consensus 65 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999987654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=156.13 Aligned_cols=177 Identities=13% Similarity=0.148 Sum_probs=143.8
Q ss_pred CchhHHHHHHHh----hhhcCCCccccccccccccchhhhhc------------CCC--CchhhhHhh---cCCCCHHHH
Q 005125 204 NATVKTVDYLYK----NLQDVPKQRYGESRLGRNGVMGNIVK------------QPS--GEFPQCISS---LNKLDPEEL 262 (713)
Q Consensus 204 ~~~~~Ai~~~~k----al~~~P~~~~~~~~~~~~~~lg~~~~------------~~~--~~a~~~~~~---~~~~~~~~~ 262 (713)
...++|+..+++ ++.++|...+.. .|.... ... +.|...++. ..|.++.++
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~ayg~--------~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSYAFGS--------VGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTTTTTT--------TCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCccccCc--------CCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 345699999999 899987532222 111110 111 345655555 577888999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSK---------------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH 327 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 327 (713)
+.+|..++..|+|++|+.+|+++++++|.+ ..+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 005125 328 RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYA 407 (713)
Q Consensus 328 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 407 (713)
.+++.+|.+|..+|++++|+.+|+++++ ++|.+. .++.
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~-----------------------------------------~a~~ 268 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQ-LYPNNK-----------------------------------------AAKT 268 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSCH-----------------------------------------HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCH-----------------------------------------HHHH
Confidence 9999999999999999999999999999 999874 5666
Q ss_pred HHHHHHHHccCHHHH-HHHhhccc
Q 005125 408 LQAEALLRLQRHQEA-HDSYNKSP 430 (713)
Q Consensus 408 ~la~~~~~~g~~~~A-~~~~~~al 430 (713)
.++.++..+|++++| ...|++++
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777776 34555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=135.48 Aligned_cols=187 Identities=10% Similarity=-0.020 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG----EAEKAVSHYK 351 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 351 (713)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.||.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567777777765 56777778888887778888888888887664 467778888887777 5 7777777777
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhh
Q 005125 352 KSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR----LQRHQEAHDSYN 427 (713)
Q Consensus 352 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 427 (713)
++.+ . .+ +.+++.+|.+|.. .+++++|+.+|+
T Consensus 78 ~A~~-~--g~-----------------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 113 (212)
T 3rjv_A 78 KAVE-A--GS-----------------------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQ 113 (212)
T ss_dssp HHHH-T--TC-----------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHH-C--CC-----------------------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 7755 2 22 3566777777776 677777777777
Q ss_pred ccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 428 KSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 428 ~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
+++...+.. ..+.+++.+|.+|.. .+++++|+.+|+++++. +.++.++. ++|.+|
T Consensus 114 ~A~~~~~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~------------~Lg~~y 172 (212)
T 3rjv_A 114 DAARDSESD--------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY------------WAGMMF 172 (212)
T ss_dssp HHTSSTTSH--------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH------------HHHHHH
T ss_pred HHHHcCCCc--------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH------------HHHHHH
Confidence 777765521 024577788888888 77888888888888877 55555555 578877
Q ss_pred HHc-c-----cHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005125 504 FKA-S-----KYKEACYAYSEGLEHEAYNSVLLCNRA 534 (713)
Q Consensus 504 ~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~la 534 (713)
..- | ++++|+.+|+++++.. +..+...++
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 653 2 7888888888887764 344444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=139.30 Aligned_cols=178 Identities=18% Similarity=0.088 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 005125 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++ .. +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g--~---------------------------- 49 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG--D---------------------------- 49 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT--C----------------------------
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC--C----------------------------
Confidence 4688899999875 6899999999999999999999999999977 32 2
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHcc----CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cC
Q 005125 390 ETQNVISFGADSAPQVYALQAEALLRLQ----RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AG 461 (713)
Q Consensus 390 ~~~~al~~~p~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g 461 (713)
+.+++.+|.+|.. + ++++|+.+|+++... ..+.+++++|.+|.. .+
T Consensus 50 -------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------------g~~~a~~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 50 -------------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------------GSKSGEIVLARVLVNRQAGAT 103 (212)
T ss_dssp -------------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHTCGGGSSC
T ss_pred -------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCcc
Confidence 3788889999998 7 899999999999643 356789999999998 89
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 462 RFEDAVKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
++++|+.+|+++++..+. ++.++. ++|.+|.. .+++++|+.+|+++++. +.++.++++||.
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~------------~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQM------------LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM 170 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHH------------HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHH------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999999998874 466665 79999999 89999999999999998 678889999999
Q ss_pred HHHHc-C-----CHHHHHHHHHHHHHhCCC
Q 005125 536 CRSKL-G-----QYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 536 ~~~~~-g-----~~~~A~~~~~~al~~~p~ 559 (713)
+|..- | ++++|+.+|+++.+....
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 99875 3 899999999999988543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=127.85 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=108.2
Q ss_pred HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005125 424 DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503 (713)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~ 503 (713)
..|++++.+.|+. ...++.+|.++...|++++|+..|++++..+|+++.+|. .+|.++
T Consensus 5 ~~l~~al~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~ 62 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL------------GLGACR 62 (142)
T ss_dssp ----CCTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHH
T ss_pred hhHHHHHcCCHHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHH------------HHHHHH
Confidence 5788899999864 457889999999999999999999999999999999988 699999
Q ss_pred HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 504 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
...|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++....
T Consensus 63 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999998765433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-14 Score=141.79 Aligned_cols=179 Identities=12% Similarity=0.003 Sum_probs=160.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG-EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 379 (713)
.+....+..++|+..+.++|.++|++..+|+..+.++..+| .+++++.++.+++. .+|++.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~nPKny----------------- 123 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QNLKSY----------------- 123 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TTCCCH-----------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hCCCcH-----------------
Confidence 33344455678999999999999999999999999999999 59999999999999 888874
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-c-CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHH
Q 005125 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRL-Q-RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVY 457 (713)
Q Consensus 380 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~ 457 (713)
.+|..++.++..+ + ++++++.++.+++..+|. +..+|..++.++
T Consensus 124 ------------------------~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk----------Ny~AW~~R~wvl 169 (349)
T 3q7a_A 124 ------------------------QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK----------NYHTWAYLHWLY 169 (349)
T ss_dssp ------------------------HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT----------CHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHH
Confidence 7888889999888 7 899999999999999995 455889999999
Q ss_pred HHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHhcc
Q 005125 458 IAAGRFE--------DAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK-------YKEACYAYSEGLEH 522 (713)
Q Consensus 458 ~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~ 522 (713)
...|.++ +++++++++++.+|.|..+|. .++.++...++ ++++++++.+++..
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~------------~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG------------WRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 9988887 999999999999999999998 68889888886 89999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCH
Q 005125 523 EAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~~g~~ 543 (713)
+|++..+|+.+..++...|+-
T Consensus 238 ~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 238 IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999988874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-15 Score=161.82 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=167.0
Q ss_pred HHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 268 EAYNKARF-EDALALYDRAIAINSSKATYRSNKSAALIGLGR----------QIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 268 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
.....|++ ++|+.++++++..+|++..+|+.++.++..+|+ +++++.+++++++.+|++..+|+..+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33445554 678999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHcC--CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 005125 337 YFRLG--EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL 414 (713)
Q Consensus 337 ~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 414 (713)
+...+ ++++|++++.++++ .+|.+. .+|..++.++.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~-~d~~N~-----------------------------------------~aW~~R~~~l~ 154 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLE-ADERNF-----------------------------------------HCWDYRRFVAA 154 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHh-hccccc-----------------------------------------cHHHHHHHHHH
Confidence 99999 77999999999999 888884 67777788888
Q ss_pred Hcc-CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCC
Q 005125 415 RLQ-RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAA--------------GRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 415 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~ 479 (713)
..| .++++++++.++++.+|. +..+|+.++.++..+ +.+++|++++.+|+.++|+
T Consensus 155 ~l~~~~~~el~~~~~~I~~~p~----------n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 155 QAAVAPAEELAFTDSLITRNFS----------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HTCCCHHHHHHHHHTTTTTTCC----------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred HcCCChHHHHHHHHHHHHHCCC----------CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 888 788888888888888774 445777788887774 5689999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH------------HHHHHHHHhccCCC
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKE------------ACYAYSEGLEHEAY 525 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~------------A~~~~~~al~~~p~ 525 (713)
+..+|. .++.++...+++++ |+.+|.+++.++|.
T Consensus 225 ~~saW~------------y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 225 DQSAWF------------YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CSHHHH------------HHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred CccHHH------------HHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 999998 58888888888776 67778888888775
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=123.47 Aligned_cols=102 Identities=27% Similarity=0.377 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
|..++.++.+|..++..|+|++|+.+|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhc
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLAN 358 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~ 358 (713)
++..+|++++|+.+|++++. ++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~-~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART-KD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HH
T ss_pred HHHHHhCHHHHHHHHHHHHH-hC
Confidence 99999999999999999999 88
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=127.10 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSS-------KAT-----YRSNKSAALIGLGRQIEALVECKEAIRI---- 322 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 322 (713)
+..++.+|..++..|+|++|+..|+++|+++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 323 ---DPCYHRAH----HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 323 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+|++..+| +++|.++..+|++++|+.+|+++++ ++|++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle-l~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE-MIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-cCCCcH
Confidence 99999999 9999999999999999999999999 999874
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-14 Score=121.79 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
.++..+|.++...|++++|+..|++++...|+ ...++..+|.++...|++++|+.+|++++...|.+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 46778899999999999999999999887764 45688899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+. .+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|+.
T Consensus 72 ~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WY------------NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HH------------HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 76 699999999999999999999999999999999999999999999999999999999998863
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=127.09 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=102.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|.++.+++.+|..++..|++++|+.+|++++..+|.++.+|+.+|.++..+|++++|+.+|++++.++|+++.+++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|++++. ++|+++
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~-~~p~~~ 123 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE-LIANXP 123 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HHTTCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-HCcCCC
Confidence 9999999999999999999999 888754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-14 Score=121.52 Aligned_cols=133 Identities=21% Similarity=0.342 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
++++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
.|++++|+..+++++. ..|.+. .++..+|.++...|++
T Consensus 82 ~~~~~~A~~~~~~~~~-~~~~~~-----------------------------------------~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LDPRSA-----------------------------------------EAWYNLGNAYYKQGDY 119 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHHHHTTTCH
T ss_pred hcCHHHHHHHHHHHHH-hCCCCh-----------------------------------------HHHHHHHHHHHHHccH
Confidence 9999999999999999 777663 4556667777777777
Q ss_pred HHHHHHhhccccCCh
Q 005125 420 QEAHDSYNKSPKFCL 434 (713)
Q Consensus 420 ~~A~~~~~~al~~~~ 434 (713)
++|+.+|++++...|
T Consensus 120 ~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 120 DEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCC
Confidence 777777777665554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-14 Score=140.17 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
....+...+..+...|++++|++.+.+++. ..+........ ..+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~-----------------------------------~~~ 117 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQF-----------------------------------LQW 117 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHH-----------------------------------HHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-cccCChhHHHH-----------------------------------HHH
Confidence 344555667777777888888877777777 55543211100 134
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA---QIDPNNKE 482 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~ 482 (713)
+..+|.++...|++++|+.+|++++...+..... ...+.++..+|.+|...|++++|+.+|++++ +..|++..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 5557888888888999999988888765432111 0135689999999999999999999999999 45666543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY------NSVLLCNRAACRSKLGQYEKA-VEDCTAALI 555 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 555 (713)
.. +..+.++|.++..+|+|++|+.+|++++++.+. .+.+++++|.+|..+|++++| ..+|++|+.
T Consensus 194 ~~--------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 194 FD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ch--------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 22 123458999999999999999999999987542 278899999999999999999 788999987
Q ss_pred hC
Q 005125 556 VM 557 (713)
Q Consensus 556 ~~ 557 (713)
+.
T Consensus 266 ~~ 267 (293)
T 2qfc_A 266 FF 267 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=125.33 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=102.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++|.+++.++.+|..++..|++++|+.+|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.+++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|++++. ++|.++
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~-~~p~~~ 120 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA-LAAAQP 120 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HHHTCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCc
Confidence 9999999999999999999999 888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.7e-14 Score=127.33 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+.+|+++++++|++..++. ++|.++...|++++|+.+|+++++++|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLS------------NRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999999999999999887 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYE 573 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~ 573 (713)
++.+|+++|.+|..+|++++|+.+|+++++++|++..+++..++...+
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888765554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=138.69 Aligned_cols=181 Identities=13% Similarity=0.021 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA------TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY--- 326 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 326 (713)
|.....+...+..++..|+|++|+..|.++++..+... ..++.+|.++...|++++|+.+|++++.+.+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44456788899999999999999999999999887654 346778999999999999999999999875543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 327 ---HRAHHRLAMLYFRLGEAEKAVSHYKKSSSL--ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 327 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
..++..+|.+|..+|++++|+.+|++++.. ..|.+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~-------------------------------------~ 194 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE-------------------------------------F 194 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH-------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc-------------------------------------c
Confidence 568999999999999999999999999961 2222210 0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDA-VKTAQDAAQID 477 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~ 477 (713)
...+++++|.+|..+|++++|+.+|++++.+.++... ....+.+++++|.+|..+|++++| ..+|++|+.+.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~----~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS----MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 0257888999999999999999999999987653211 112367899999999999999999 88899998753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=122.81 Aligned_cols=103 Identities=25% Similarity=0.354 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-------HRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 330 (713)
.+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999998765 4689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.++|.++..+|++++|+.+|++++. ..|+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~-~~~~~ 116 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS-EFRDP 116 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-hCcCH
Confidence 9999999999999999999999999 87764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=125.77 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN-------NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
.+..+..+|..++..|+|++|+..|++|++++|+ +..... ..+|.++|.++..+|+|++|+.+|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~-------a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-------AFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccch-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4667889999999999999999999999999999 443111 12345899999999999999999999
Q ss_pred Hhcc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 005125 519 GLEH-------EAYNSVLL----CNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA 563 (713)
Q Consensus 519 al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 563 (713)
+|++ +|+++.+| +++|.++..+|++++|+.+|+++++++|++...
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 9999 99999999 999999999999999999999999999887543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-15 Score=160.73 Aligned_cols=189 Identities=9% Similarity=-0.030 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 005125 308 RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE----------AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNE 377 (713)
Q Consensus 308 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~ 377 (713)
..++|+..+++++.++|++..+|+..+.++..+|+ +++|+.++.+++. .+|++.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pK~y--------------- 107 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPKSY--------------- 107 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTTCH---------------
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCCCCH---------------
Confidence 34688999999999999999999999999999887 7777777777777 666663
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc--CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHH
Q 005125 378 ARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ--RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQ 455 (713)
Q Consensus 378 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~ 455 (713)
.+|..++.++..++ ++++|+++++++++.+|. +..+|..++.
T Consensus 108 --------------------------~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~----------N~~aW~~R~~ 151 (567)
T 1dce_A 108 --------------------------GTWHHRCWLLSRLPEPNWARELELCARFLEADER----------NFHCWDYRRF 151 (567)
T ss_dssp --------------------------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc----------cccHHHHHHH
Confidence 88999999999999 779999999999999985 5568999999
Q ss_pred HHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHh
Q 005125 456 VYIAAG-RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA--------------SKYKEACYAYSEGL 520 (713)
Q Consensus 456 ~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al 520 (713)
++...| .++++++++.++++.+|.+..+|. .++.++... +.+++|++++.+|+
T Consensus 152 ~l~~l~~~~~~el~~~~~~I~~~p~n~saW~------------~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWH------------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH------------HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCCccHHH------------HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999998 577777764 77899999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCCCC
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEK------------AVEDCTAALIVMPSY 560 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 560 (713)
.++|++..+|+.++.++.+.+++++ |+..|.+++.++|..
T Consensus 220 ~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 220 FTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred hhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 9999999999999999999999777 667788888888763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=121.45 Aligned_cols=132 Identities=25% Similarity=0.360 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++.++|.++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNV 394 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 394 (713)
..+|++++|+.+|++++. ++|.+... ...+..+..+...|++++|+..+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~-~~p~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK-VKPHDKDA----KMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH-HSTTCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH-hCCCCHHH----HHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999999 99987521 11233333344445555554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-14 Score=126.81 Aligned_cols=107 Identities=27% Similarity=0.426 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.+.++..++.+|..++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|++..+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.+|..+|++++|+.+|++++. ++|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~-~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE-AEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHH-hCCCch
Confidence 999999999999999999999 998874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=119.68 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..+..+|..+...|++++|+..|+++++++|+++.++. ++|.++...|++++|+..|+++++++|+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS------------NRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4568899999999999999999999999999999998887 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
++.+++++|.++..+|++++|+..|+++++++
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=120.00 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+.++.++|.+++..|+|++|+.+|++|++++|++..++. ++|.++..+|+|++|+..|+++++++|+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~------------nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYN------------NKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------hHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 4668889999999999999999999999999999999887 7999999999999999999999999886
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 526 N-------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 526 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
+ +.++.++|.++..+|++++|+.+|++++...|+.
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5 4589999999999999999999999999988863
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=136.47 Aligned_cols=177 Identities=12% Similarity=0.026 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKAT------YRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HR 328 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 328 (713)
.+...+..++..|+|++|+.+|+++++..+..+. .+..+|.++...+++++|+.+|++++.+.+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3556688899999999999999999998776654 34468999999999999999999999975432 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 329 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
++..+|.+|..+|++++|+.+|++++. ...... + ++.....++.+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~-------------------~---------------~~~~~~~~~~n 201 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALH-------------------D---------------NEEFDVKVRYN 201 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSS-------------------C---------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcc-------------------c---------------chhHHHHHHHH
Confidence 799999999999999999999999997 221100 0 00011368889
Q ss_pred HHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAG-RFEDAVKTAQDAAQI 476 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 476 (713)
+|.+|..+|++++|+.++++++.+.+..... ...+.+++.+|.+|..+| ++++|+.+|++|+.+
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSM----ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC----TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999877654221 124779999999999999 579999999999975
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=130.85 Aligned_cols=139 Identities=16% Similarity=0.099 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
...++.+|..++..|++++|+.+|++++ +| ++.+++.+|.++...|++++|+.+|++++.++|++..+++.+|.+|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3458899999999999999999999995 44 78899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccH----------HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDI----------AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
.+|++++|+.+|++++. +.|.+. ........++.++..+...|++++|+..+++++...|+.
T Consensus 83 ~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHH-hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999 877643 111123456667777777777777777777777777764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=118.83 Aligned_cols=108 Identities=26% Similarity=0.333 Sum_probs=103.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..|.++.+++.+|..++..|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.++...|++++|+.+|++++. .+|.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 118 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD-LDSSCK 118 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCGGGT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-hCCCch
Confidence 9999999999999999999999 888773
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-12 Score=127.63 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAM 335 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 335 (713)
.+|+.++.+ .-.+-.|+|..++.-. -++.|.+ ....+.+.++|..+|++.... ..+....+...++.
T Consensus 12 ~~~~~lf~i-kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNI-KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHH-HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHH
Confidence 344444543 3456678898888743 3344433 346666778888888876421 12223335555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA-DSAPQVYALQAEALL 414 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~ 414 (713)
.+. ++ |+..|++.+. ..+... ...+..+.++...|++++|+..+.+.+..+| ....+++..++.+++
T Consensus 80 ~~~--~~---a~~~l~~l~~-~~~~~~------~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLK-DKQNSP------YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTT-TSCCCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHh-cCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 7888888776 543332 2345677888888999999999988888876 344588999999999
Q ss_pred HccCHHHHHHHhhccccCChh--hHHhhhcccCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 415 RLQRHQEAHDSYNKSPKFCLE--YYTKLFGLAGGAYLLIVRAQVYIAAG--RFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490 (713)
Q Consensus 415 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 490 (713)
.+|+.+.|.+.++++.+..|+ +.+ ....+...-|++....| ++.+|...|+++....|+......
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~------d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l----- 216 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGD------NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG----- 216 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH-----
T ss_pred HCCCHHHHHHHHHHHHhcCccccccc------hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH-----
Confidence 999999999999999888773 111 01223333355566667 999999999999888776222222
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEH----------EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 491 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
.+. ++..+|++++|...++.+++. +|+++.++.|++.+...+|+ +|.++++++.+.+|++
T Consensus 217 -------Lln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 217 -------LLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp -------HHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred -------HHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 122 899999999999999988876 58899999999999999998 8999999999999999
Q ss_pred hHHHH-HHHHHHHHHHHHh
Q 005125 561 SKARL-EAAIQDYEMLIRE 578 (713)
Q Consensus 561 ~~a~~-~~A~~~~~~al~~ 578 (713)
+...- .+....|.++...
T Consensus 287 p~i~d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 287 AFIKHHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 87765 5556667666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=118.33 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhcccc
Q 005125 341 GEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~ 361 (713)
|++++|+.+|+++++ ++|.+
T Consensus 99 g~~~~A~~~~~~al~-~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLL-SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHH-hCcCC
Confidence 999999999999999 88876
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=129.09 Aligned_cols=130 Identities=11% Similarity=0.098 Sum_probs=115.4
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKA 492 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 492 (713)
+...|++++|+..|++++...|+ ++.+++.+|.+|...|++++|+.+|++++.++|++..++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------- 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ----------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA------- 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH-------
T ss_pred hhhccCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------
Confidence 45678999999999999998874 5668999999999999999999999999999999988887
Q ss_pred HHHHHHHHHH-HHHcccH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 493 MASARLRGNL-LFKASKY--KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 493 ~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.+|.+ +...|++ ++|+..|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++....
T Consensus 83 -----~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 83 -----ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp -----HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 68999 8899999 9999999999999999999999999999999999999999999999999876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=118.42 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.++.+|.++...|++++|+..|+++++.+|++..+|. .+|.++...|++++|+..|+++++++|+++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~------------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWR------------SLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4678999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
+++++|.+|..+|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-11 Score=132.18 Aligned_cols=316 Identities=8% Similarity=-0.047 Sum_probs=222.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--CCHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR---QIEALVECKEAIRIDP--CYHR 328 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~ 328 (713)
.+|.+...|..+.......++++.+...|++++...|.....|...+......++ ++.+...|++++...| .+..
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4566777899999999999999999999999999999999999999999999999 9999999999999984 5778
Q ss_pred HHHHHHHHHHHcCCH--------HHHHHHHHHHhhh--h-ccccHHHHHHHHHHHHHH---HHHHHhhcHHHHHHHHHHH
Q 005125 329 AHHRLAMLYFRLGEA--------EKAVSHYKKSSSL--A-NQKDIAKAEALHKHLTKC---NEARELKRWNDLLKETQNV 394 (713)
Q Consensus 329 ~~~~la~~~~~~g~~--------~~A~~~~~~al~~--~-~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~a 394 (713)
.|..........++. +.....|++|+.. . ++.....+..+..+.... ......++++.+...|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888877666555543 3344788888862 2 454443333332222110 0112334566677777777
Q ss_pred HHcCCCChHHHHHHHHHH-------------HHHccCHHHHH--------------------------------------
Q 005125 395 ISFGADSAPQVYALQAEA-------------LLRLQRHQEAH-------------------------------------- 423 (713)
Q Consensus 395 l~~~p~~~~~~~~~la~~-------------~~~~g~~~~A~-------------------------------------- 423 (713)
+.+-......+|...... -....+|+.|.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 754222222222110000 00111222222
Q ss_pred -----------------------------HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 005125 424 -----------------------------DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV-KTAQDA 473 (713)
Q Consensus 424 -----------------------------~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~a 473 (713)
..|++++...| ..+.+|+..+..+...|+.++|. ..|++|
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p----------~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC----------FAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 23333333333 35678899999999999999997 999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-----------CC-----------CHHHHH
Q 005125 474 AQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE-----------AY-----------NSVLLC 531 (713)
Q Consensus 474 l~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~ 531 (713)
+...|.+...|. ..+......|++++|...|++++..- |. ...+|.
T Consensus 371 i~~~P~s~~Lwl------------~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 371 QQCIPNSAVLAF------------SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp HHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 999999987776 57888889999999999999999752 42 345788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHH-------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005125 532 NRAACRSKLGQYEKAVEDCTAALIV-MPSYSKARL-------------EAAIQDYEMLIREIPGNEEVGRALFE 591 (713)
Q Consensus 532 ~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~ 591 (713)
..+.+..+.|+.+.|...|.+|++. .+.....+. +.|...|+.+++..|+++..+....+
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 8888888999999999999999987 333344333 78999999999999999887655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-13 Score=115.72 Aligned_cols=106 Identities=24% Similarity=0.406 Sum_probs=101.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
..+.++..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.++..+|++++|+.+|++++.++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
|.+|..+|++++|+.+|++++. ++|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~-~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS-LAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-HChh
Confidence 9999999999999999999999 8887
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-14 Score=150.44 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=123.6
Q ss_pred CCCchhHHHHHHHh----hhhcCCCccccccccccccc----hhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHH
Q 005125 202 CPNATVKTVDYLYK----NLQDVPKQRYGESRLGRNGV----MGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNE 268 (713)
Q Consensus 202 ~~~~~~~Ai~~~~k----al~~~P~~~~~~~~~~~~~~----lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~ 268 (713)
.+...+.|+..+.+ ++.++|...+.........+ ......... +.|...++. ..|..+..++.+|..
T Consensus 198 v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 198 IPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp CCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 34567789988888 88888742221111000000 000000111 345555554 567788899999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 269 AYNKARFEDALALYDRAIAINSSK---------------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
++..|+|++|+.+|+++++++|.+ ..+++++|.+|..+|++++|+.+|+++++++|++..+|+++
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 357 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR 357 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 999999999999999999999998 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+.+|+++++ ++|++.
T Consensus 358 g~a~~~~g~~~~A~~~~~~al~-l~P~~~ 385 (457)
T 1kt0_A 358 GEAQLLMNEFESAKGDFEKVLE-VNPQNK 385 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-TC----
T ss_pred HHHHHHccCHHHHHHHHHHHHH-hCCCCH
Confidence 9999999999999999999999 998873
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=116.60 Aligned_cols=107 Identities=34% Similarity=0.524 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
.|.++..++.+|..++..|++++|+.+|++++..+|.+..++..+|.++...|++++|+.++++++..+|++..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 335 MLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.++...|++++|+.+|++++. ++|.+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~-~~p~~~ 114 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE-LDPDNE 114 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HSTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHh-cCccch
Confidence 999999999999999999999 888763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=136.47 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID---PNNK 481 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~ 481 (713)
++..+|.++...+++++|+.+|++++.+.+..... ...+.++..+|.+|...|++++|+.+|+++++.. +.+.
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 44456777777778888888888887654332111 0135578999999999999999999999999642 2332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN------SVLLCNRAACRSKLGQ-YEKAVEDCTAAL 554 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al 554 (713)
... +..+.++|.++..+|+|++|+.++++++++.+.. +.+++++|.+|..+|+ +++|+.+|++|+
T Consensus 193 ~~~--------~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 193 EFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 222 2345689999999999999999999999886433 7899999999999995 799999999998
Q ss_pred Hh
Q 005125 555 IV 556 (713)
Q Consensus 555 ~~ 556 (713)
.+
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-11 Score=132.40 Aligned_cols=355 Identities=7% Similarity=-0.030 Sum_probs=235.6
Q ss_pred HHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcC---HHHHH
Q 005125 208 KTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKAR---FEDAL 279 (713)
Q Consensus 208 ~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~---~~~A~ 279 (713)
+-+..|++++..+|. ....|. .++... ...+ +.+...++. ..|.....|...+......++ ++.+.
T Consensus 50 d~i~~lE~~l~~np~--d~~~W~---~yi~~~-~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPT--DIFLYV---KLLKHH-VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CHHHHHHHHHHHCTT--CHHHHH---HHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHHCcC--CHHHHH---HHHHHH-HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 567889999999973 233333 222222 2223 457777777 889999999999999999999 99999
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH-------
Q 005125 280 ALYDRAIAINS--SKATYRSNKSAALIGLGRQ--------IEALVECKEAIRI----DPCYHRAHHRLAMLYF------- 338 (713)
Q Consensus 280 ~~~~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~------- 338 (713)
.+|++++...| .++.+|..........++. +.....|++|+.. ++....+|........
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99999999984 5777887777655555543 3344788888864 6767777766665433
Q ss_pred --HcCCHHHHHHHHHHHhhhhccccHHH-HHHHHHH-------------------HHHHHH-------------------
Q 005125 339 --RLGEAEKAVSHYKKSSSLANQKDIAK-AEALHKH-------------------LTKCNE------------------- 377 (713)
Q Consensus 339 --~~g~~~~A~~~~~~al~~~~p~~~~~-~~~~~~~-------------------~~~~~~------------------- 377 (713)
.+++.+.+...|.+++. +....... +..+..+ +..+..
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 34457788889999987 43222111 0000000 000000
Q ss_pred ----------------------HH-----Hhh---------cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 378 ----------------------AR-----ELK---------RWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 378 ----------------------~~-----~~~---------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
+. +.. ........|++++...|... .+|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-EIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCcHHH
Confidence 00 000 12234567999999999874 899999999999999999
Q ss_pred HH-HHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHH
Q 005125 422 AH-DSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID-----------PNNKEVIKGVKM 489 (713)
Q Consensus 422 A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~~~~ 489 (713)
|. ..|++|+...|. ...++...+......|++++|...|++++..- |.+......+..
T Consensus 362 a~r~il~rAi~~~P~----------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 362 VITKYLKLGQQCIPN----------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 97 999999988884 45578889999999999999999999999752 432110000000
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHH--
Q 005125 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEH-EAYNSVLLCNRAACRSKLGQ-YEKAVEDCTAALIVMPSYSKARL-- 565 (713)
Q Consensus 490 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~-- 565 (713)
.-...+...+....+.|+.+.|...|.+|++. .+....+|...|.+....|+ ++.|...|+.+++..|+++..|.
T Consensus 432 -~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 432 -KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp -HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 00011224556666677777888888888776 33445666666666666544 77888888888887777776653
Q ss_pred ----------HHHHHHHHHHHHhCCC
Q 005125 566 ----------EAAIQDYEMLIREIPG 581 (713)
Q Consensus 566 ----------~~A~~~~~~al~~~p~ 581 (713)
+.|...|++++...|+
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 6777777777777763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=128.67 Aligned_cols=173 Identities=14% Similarity=0.032 Sum_probs=131.0
Q ss_pred HHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Q 005125 269 AYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLGRQIEALVECKEAIRI------DPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g 341 (713)
++..|++++|+..++.... +| ....++..+|.++...|++++|+.++++++.+ .+....++..+|.+|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999996665544 44 66889999999999999999999999999994 4445788999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
++++|+.+|++++. +...... + +.....++..+|.++...|++++
T Consensus 81 ~~~~A~~~~~~al~-~~~~~~~-------------------~---------------~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 81 NWDAARRCFLEERE-LLASLPE-------------------D---------------PLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp CHHHHHHHHHHHHH-HHHHSCC-------------------C---------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHH-HHHHcCc-------------------c---------------HHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999998 4211100 0 00013677888999999999999
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 481 (713)
|+.++++++.+.+...... ..+.++..+|.++...|++++|+.++++++++.....
T Consensus 126 A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 126 ARQEYEKSLVYAQQADDQV----AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999987644322111 2355678999999999999999999999998754433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-13 Score=121.09 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAI------------------NSSKATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
.+..+..+|..++..|+|++|+..|++++.+ +|....+++++|.+|..+|++++|+.+|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567999999999999999999999999999 7777899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.++|+++.+|+.+|.+|..+|++++|+.+|++++. ++|++.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR-NHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-cCCCCH
Confidence 999999999999999999999999999999999999 999986
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-13 Score=120.93 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++...|+ .+.++..+|.++...|++++|+.+|++++..+|.+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 56677788888888888888888888777664 45577778888888888888888888888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAAC--RSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~ 556 (713)
+. .+|.++...|++++|+.+|+++++++|.+..++..++.+ +...|++++|+..++++..+
T Consensus 84 ~~------------~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 84 YY------------RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 66 578888888888888888888888888777777444444 77777788877777766554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-14 Score=132.16 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh------hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005125 405 VYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL------FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 478 (713)
.+..+|..+...|++++|+.+|++++.+.|...... ........++.++|.+|...|++++|+.+|++++.++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344445555555555555555555554444321000 00000136889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 005125 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV-EDCTAALI 555 (713)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 555 (713)
++..++. .+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++. ..|.+.+.
T Consensus 120 ~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALY------------KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998887 69999999999999999999999999999999999999999999988887 55555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-14 Score=153.09 Aligned_cols=139 Identities=25% Similarity=0.310 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+.++..+|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+++.+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH--HHHc
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA--LLRL 416 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~--~~~~ 416 (713)
.+|++++|+.+|+++++ ++|++. .++..++.+ +...
T Consensus 86 ~~g~~~eA~~~~~~al~-~~p~~~-----------------------------------------~~~~~l~~~~~~~~~ 123 (477)
T 1wao_1 86 ALGKFRAALRDYETVVK-VKPHDK-----------------------------------------DAKMKYQECNKIVKQ 123 (477)
T ss_dssp HHTCHHHHHHHHHHHHH-HSTTCT-----------------------------------------THHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCCH-----------------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999 888763 455556666 7788
Q ss_pred cCHHHHHHHhh-----------ccccCChhhHHh
Q 005125 417 QRHQEAHDSYN-----------KSPKFCLEYYTK 439 (713)
Q Consensus 417 g~~~~A~~~~~-----------~al~~~~~~~~~ 439 (713)
|++++|+..++ +++.+.|++...
T Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 99999999998 788877765444
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=114.59 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=79.9
Q ss_pred chhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 618 SNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 618 ~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
+.++|...+.... .+++.|++ |++|+.+.|.|++++++||++.|++||+|+. +..++|+++|||++|++|+.
T Consensus 9 t~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~~fk~G~~ 85 (118)
T 3evi_A 9 SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIFVYKNGQI 85 (118)
T ss_dssp CGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEEEEETTEE
T ss_pred CHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEEEEECCEE
Confidence 4567877665443 67778999 9999999999999999999999999999986 58899999999999999999
Q ss_pred eeeecCC--------CHHHHHHHHHhh
Q 005125 693 VKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~--------~~~~~~~~~~~~ 711 (713)
++++.|. +.+.|+.+|.++
T Consensus 86 v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 86 EAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 9999986 489999999875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-13 Score=124.13 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA----------------TYRSNKSAALIGLGRQIEALVECKEAI 320 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al 320 (713)
..+..+..+|..++..|+|++|+.+|++++++.|.++ .++.++|.++..+|++++|+.+|++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999887 899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 321 RIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 321 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.++|++..+++.+|.+|..+|++++|+.+|++++. ++|.+.
T Consensus 116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~ 156 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-LNPNNL 156 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCH
T ss_pred HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HCCCcH
Confidence 99999999999999999999999999999999999 888874
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-13 Score=113.37 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=97.5
Q ss_pred ccccccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCc
Q 005125 603 DVKDMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSS 680 (713)
Q Consensus 603 ~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~ 680 (713)
++..-.+...+..+.+.++|...+.....+++.|++ |++|+.+.|.|+++++.++++.|+.||+++.+.++..++|.+
T Consensus 11 ~~~~~~~~~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~ 90 (125)
T 1r26_A 11 GIRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQ 90 (125)
T ss_dssp -CCCSSCCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS
T ss_pred ceeeeccccceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc
Confidence 444445666677787778999988777788888999 999999999999999999999999999999999999999999
Q ss_pred ccEEEEEECCeEeeeecCCCHHHHHHHHHhh
Q 005125 681 IPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+||+++|++|+.+.++.|.+++.|.++|+++
T Consensus 91 ~Pt~~i~~~G~~~~~~~G~~~~~l~~~l~~~ 121 (125)
T 1r26_A 91 LPTFIIARSGKMLGHVIGANPGMLRQKLRDI 121 (125)
T ss_dssp SSEEEEEETTEEEEEEESSCHHHHHHHHHHH
T ss_pred ccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999876
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=109.71 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=89.9
Q ss_pred ceeecchhHHHHHh--hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV--TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l--~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+ ...+..++.|++ |++|+.+.|.++++++.++++.|+.+|+++.+.++..++|.++||+++|+
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 45566778898887 356778888998 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|+.+.++.|.+.++|.++|+++.
T Consensus 83 ~G~~~~~~~G~~~~~l~~~l~~~l 106 (107)
T 1gh2_A 83 NKVRIDQYQGADAVGLEEKIKQHL 106 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhc
Confidence 999999999997778999998764
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=114.24 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=76.6
Q ss_pred eecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+.+.++|...+...+..++.|++ |++|+.+.|.++++++.++++.|+.||+++.+.++..++|.++||+++|++|+.
T Consensus 4 ~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKE 83 (105)
T ss_dssp ------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEETTEE
T ss_pred ccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeE
Confidence 344556677777667788888998 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHHHhhh
Q 005125 693 VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.++.|. +.+.|.++|+++.
T Consensus 84 ~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 84 ILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEESSCCHHHHHHHHHTTC
T ss_pred EEEEeCCcCHHHHHHHHHHhh
Confidence 9999999 9999999998764
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=110.01 Aligned_cols=96 Identities=20% Similarity=0.445 Sum_probs=89.9
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
..+.++|...+...+.+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||+++|++|+.+
T Consensus 11 ~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 90 (109)
T 3f3q_A 11 FKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEV 90 (109)
T ss_dssp CCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred CCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEE
Confidence 45677899888888888888999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHhh
Q 005125 694 KEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~~~~~~~~~~~~~ 711 (713)
.++.|.+++.|.++|+++
T Consensus 91 ~~~~G~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 91 AKVVGANPAAIKQAIAAN 108 (109)
T ss_dssp EEEESSCHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhh
Confidence 999999999999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-12 Score=108.75 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=99.1
Q ss_pred CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 255 NKLD-PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 255 ~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
+|.. +..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.++++++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3444 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|...|++++|+.+|++++. .+|.+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~-~~~~~~ 111 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE-LDPNNA 111 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-hCCCcH
Confidence 9999999999999999999999 888774
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=118.20 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI--------DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYS 517 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 517 (713)
.+..+..+|..++..|++++|+..|++++.+ +|.++.... ........+.++|.++..+|+|++|+..|+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE--LDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH--HHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4668889999999999999999999999998 444332110 001112334489999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 518 EGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 518 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999999999999999988775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=113.30 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++...|+ +..+++.+|.++...|++++|+.+|+++++.+|.+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 45555555555555555555555555555543 23355555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 541 (713)
+. .+|.++...|++++|+.+|+++++.+|.+..++..++.++..+|
T Consensus 87 ~~------------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YT------------RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HH------------HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 44 45555555555555555555555555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=117.52 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=89.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCCH
Q 005125 458 IAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY----------KEACYAYSEGLEHEAYNS 527 (713)
Q Consensus 458 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 527 (713)
.+.+.+++|+..|+++++++|+++++|. ++|.++...+++ ++|+..|++||+++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~------------n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLT------------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 3567899999999999999999999998 689999888775 599999999999999999
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 528 VLLCNRAACRSKLG-----------QYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 528 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
.+|+++|.+|..+| ++++|+.+|++|++++|++. .|.+++++.+..++....
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------~y~~al~~~~ka~el~~~ 143 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------HYLKSLEMTAKAPQLHAE 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHhCHhccCc
Confidence 99999999999886 67777777777777777763 344455554444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-13 Score=111.21 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC--YHRAHHR 332 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 332 (713)
+|.++..++.+|.+++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++++|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHhhhhcccc
Q 005125 333 LAMLYFRL-GEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 333 la~~~~~~-g~~~~A~~~~~~al~~~~p~~ 361 (713)
+|.++... |++++|+.++++++. ..|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~-~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL-EHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG-GCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh-cccCC
Confidence 99999999 999999999999999 87764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-12 Score=107.56 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
...|++++|+.+|++++. .+|.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~-~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK-HEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT-TCTTCH
T ss_pred HHHhhHHHHHHHHHHHHH-cCCCCH
Confidence 999999999999999999 888874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=122.35 Aligned_cols=202 Identities=9% Similarity=-0.026 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 278 ALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP--CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 278 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
|+..|++.++..+....++..+|.++...|++++|+..+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999887766777788999999999999999999999999987 8899999999999999999999999999988
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHccCHHHHHHHhhccccC
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELK--RWNDLLKETQNVISFGADSA-PQVYALQAEALLRLQRHQEAHDSYNKSPKF 432 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (713)
.+|+....-..+...+..+.+....| ++.+|...|+++....|+.. +..+++ +++.+|++++|...++.+++.
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 88831111112233333444444455 99999999999988887621 123333 899999999999999988877
Q ss_pred ChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 433 CLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
.|+...+-...+.++.++.++..+...+|+ +|.++++++.+.+|+++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 554211100012467789889889999998 999999999999999998765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=117.55 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=109.3
Q ss_pred CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHH
Q 005125 245 GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAA-LIGLGRQ--IEALVECKE 318 (713)
Q Consensus 245 ~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~ 318 (713)
++|...+.. ..|.++.+++.+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++|+.+|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456666655 6788888999999999999999999999999999999999999999999 8899999 999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 319 AIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 319 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
++.++|++..+++.+|.+|...|++++|+.+|++++. ++|.+.
T Consensus 107 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~ 149 (177)
T 2e2e_A 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD-LNSPRI 149 (177)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCTTS
T ss_pred HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-hCCCCc
Confidence 9999999999999999999999999999999999999 999874
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=111.13 Aligned_cols=97 Identities=26% Similarity=0.463 Sum_probs=89.0
Q ss_pred eecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 615 FVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 615 ~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
...+.++|...+. ....+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||+++|++|
T Consensus 15 ~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 94 (116)
T 3qfa_C 15 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94 (116)
T ss_dssp CCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEESSS
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEEeCC
Confidence 3456778988887 67788888998 9999999999999999998899999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.+.++.|.+.+.|.++|+++
T Consensus 95 ~~~~~~~G~~~~~l~~~l~~~ 115 (116)
T 3qfa_C 95 QKVGEFSGANKEKLEATINEL 115 (116)
T ss_dssp SEEEEEESCCHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHh
Confidence 999999999999999999875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=148.26 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=120.5
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---------------HRAHHRLAM 335 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 335 (713)
..+++++|+..|+.+++..|..+.++..+|.+++..|+|++|+..|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999998 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 005125 336 LYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415 (713)
Q Consensus 336 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 415 (713)
+|..+|++++|+.+|++++. ++|++. .+|+.+|.+|..
T Consensus 326 ~~~~~g~~~~A~~~~~~al~-~~p~~~-----------------------------------------~a~~~~g~a~~~ 363 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALG-LDSANE-----------------------------------------KGLYRRGEAQLL 363 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HSTTCH-----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHh-cCCccH-----------------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999 888773 667777777777
Q ss_pred ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHH
Q 005125 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468 (713)
Q Consensus 416 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 468 (713)
+|++++|+.+|++++++.|++ ..++..++.++..++++++|..
T Consensus 364 ~g~~~~A~~~~~~al~l~P~~----------~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 364 MNEFESAKGDFEKVLEVNPQN----------KAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHTTC--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777753 3366777777777777776654
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-12 Score=106.91 Aligned_cols=99 Identities=25% Similarity=0.461 Sum_probs=90.4
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.+.|...+. .....++.|++ |++|+.+.|.++++++.++++.|+.+|.++.+.++..++|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence 455677788888887 56677888888 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.+.++.|.+.+.|.++|+++
T Consensus 82 ~g~~~~~~~g~~~~~l~~~l~~~ 104 (105)
T 3m9j_A 82 KGQKVGEFSGANKEKLEATINEL 104 (105)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=110.90 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++...|+ .+.++..+|.++...|++++|+.++++++..+|++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 45566666666666777777777666665553 34456666667766777777777777777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
+. .+|.++...|++++|+.+|+++++.+|++..++..+|.++..+|++
T Consensus 83 ~~------------~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YG------------RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HH------------HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 55 4666666677777777777777766666666666666666666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-12 Score=106.85 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+..|++++..+|.+..++. .+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS------------NRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH------------HHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3568889999999999999999999999999999988887 6999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++.++.++|.++..+|++++|+..++++++++|++..++.
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999877665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=112.62 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=98.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA 524 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 524 (713)
..+..++.+|.++...|++++|+.+|++++..+|++..++. ++|.++...|++++|+..|+++++++|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT------------NRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 46778999999999999999999999999999999998887 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 525 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999999999999999886
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=106.92 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=88.3
Q ss_pred cccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh----hHHHcCCC-c
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY----IAKSEGVS-S 680 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~----~~~~~~v~-~ 680 (713)
.|...+..+.+.++|...+...++++++|++ ||+|+++.|.|+++... +++.|++||+++.+. ++..+||. .
T Consensus 3 ~~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~ 81 (112)
T 3iv4_A 3 YFQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHE 81 (112)
T ss_dssp CGGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred chhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence 4666788888999999999888888888888 99999999999999986 789999999999976 89999999 5
Q ss_pred ccEEEEEECCeEeee-ecCC-CHHHHHHHH
Q 005125 681 IPAFKIYKNGSRVKE-IPGH-QCELLEKSV 708 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~-~~g~-~~~~~~~~~ 708 (713)
+|+|++|++|+.+.+ ..+. +.+.|.+.|
T Consensus 82 sPq~il~k~G~~v~~~SH~~I~~~~l~~~~ 111 (112)
T 3iv4_A 82 SPQAFYFVNGEMVWNRDHGDINVSSLAQAE 111 (112)
T ss_dssp SSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred CCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence 999999999999977 5566 888887765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=117.22 Aligned_cols=168 Identities=12% Similarity=0.056 Sum_probs=130.3
Q ss_pred HHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHH
Q 005125 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYI 458 (713)
Q Consensus 379 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 458 (713)
...|++++|...++... .+|.....++..+|.++...|++++|+.+|++++.+...... ....+.++..+|.+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD----HTAEHRALHQVGMVER 77 (203)
T ss_dssp ----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHH
Confidence 45788999988554443 366666789999999999999999999999999885432211 0124668999999999
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--C----HHH
Q 005125 459 AAGRFEDAVKTAQDAAQI---DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY--N----SVL 529 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~ 529 (713)
..|++++|+.+|++++.+ .++++... ...+.++|.++...|++++|+.++++++.+.+. + ..+
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAA--------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999999999988 45443111 123447999999999999999999999976432 2 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 530 LCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 530 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+.++|.++..+|++++|+.++++++++...
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999987443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-12 Score=107.86 Aligned_cols=104 Identities=29% Similarity=0.415 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++.+|.++...|++++|+.+|++++...|.+..++. .+|.++...|++++|+..|++++...|.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 78 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence 4444444444444444444444444444444444433 3444444444555555555444444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
++..+|.++...|++++|+..++++++.+|++..++
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 444445444445555555555555444444444433
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-12 Score=107.56 Aligned_cols=102 Identities=23% Similarity=0.437 Sum_probs=92.1
Q ss_pred ccceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 611 SNLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 611 ~~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
..+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++ ++.|+.||++..+.++..++|.++||
T Consensus 2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 81 (112)
T 1ep7_A 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81 (112)
T ss_dssp CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccE
Confidence 456677777889888765 6788888988 9999999999999999997 79999999999999999999999999
Q ss_pred EEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 684 FKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+++|++|+.+.++.|.+.+.|.++|+++.
T Consensus 82 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~l 110 (112)
T 1ep7_A 82 FHVYKDGVKADDLVGASQDKLKALVAKHA 110 (112)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEECCeEEEEEcCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-12 Score=111.41 Aligned_cols=109 Identities=25% Similarity=0.297 Sum_probs=104.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
..+.++..++.+|..++..|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.+|++++.++|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456788899999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
+.+|.+|..+|++++|+.+|++++. ++|++..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~ 134 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS-LEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HCSSCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHH
Confidence 9999999999999999999999999 9998853
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=131.82 Aligned_cols=214 Identities=10% Similarity=0.032 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-----------------TYRSNKSAALIGLGRQIEALVECKEAIR 321 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (713)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999987643 3688999999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 322 IDPCYH------RAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 322 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
+.+... .+...++.++...|++++|+.++++++. ..+..............++..+...|+|.+|+..+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 765542 3466788888899999999999999988 544332222234567888999999999999999999988
Q ss_pred HcCC-----CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 396 SFGA-----DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 396 ~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
.... .....++..+|.+|...|++++|..+|++++...+..... ....+.++..+|.++...+++++|..+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP---TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6522 2234789999999999999999999999998765432110 0013567888999999999999999999
Q ss_pred HHHHHh
Q 005125 471 QDAAQI 476 (713)
Q Consensus 471 ~~al~~ 476 (713)
.+++..
T Consensus 240 ~~a~~~ 245 (434)
T 4b4t_Q 240 FESFES 245 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.7e-12 Score=108.55 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKA---TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---HRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 333 (713)
++++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578999999999999999999999999999988 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 334 AMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 334 a~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|.+|..+|++++|+..|++++. ..|++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT-QYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-HCCCCh
Confidence 9999999999999999999999 999875
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-12 Score=109.06 Aligned_cols=103 Identities=17% Similarity=0.352 Sum_probs=92.1
Q ss_pred cccceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 610 GSNLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
+..+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||
T Consensus 15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt 94 (124)
T 1xfl_A 15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPT 94 (124)
T ss_dssp CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCE
Confidence 3456777788888887754 5677777888 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 684 FKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+++|++|+.+.++.|.+++.|.++|+++.
T Consensus 95 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 95 FMFLKEGKILDKVVGAKKDELQSTIAKHL 123 (124)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred EEEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence 99999999999999999999999998764
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-12 Score=106.64 Aligned_cols=98 Identities=20% Similarity=0.372 Sum_probs=85.5
Q ss_pred eeecchhHHHHHhhc---CCceEEEeec--CchhHHHHHHHHHHHHh--CCCcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 614 VFVSSNERFRHFVTS---PGMAVVLFCS--KAEHKQVLQLMEQVCKR--FPSVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~---~~~~vv~f~~--cg~c~~~~~~~~~l~~~--~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+. ++++.|+.||+++.+.++..++|.++||+++
T Consensus 3 ~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 82 (112)
T 3d6i_A 3 IEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFII 82 (112)
T ss_dssp EEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEE
Confidence 445556788888765 6678888988 99999999999999988 6789999999999999999999999999999
Q ss_pred EECCeEeeeecCCCHHHHHHHHHhh
Q 005125 687 YKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
|++|+.+.++.|.++++|.++|+++
T Consensus 83 ~~~G~~~~~~~G~~~~~l~~~l~~~ 107 (112)
T 3d6i_A 83 IHKGTILKELSGADPKEYVSLLEDC 107 (112)
T ss_dssp EETTEEEEEECSCCHHHHHHHHHHH
T ss_pred EECCEEEEEecCCCHHHHHHHHHHH
Confidence 9999999999999777899999876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=113.15 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=86.5
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 270 YNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ----------IEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
-+.+.|++|+..|+++++++|+++++|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHhhhhccccH
Q 005125 340 LG-----------EAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 340 ~g-----------~~~~A~~~~~~al~~~~p~~~ 362 (713)
+| ++++|+.+|++|++ ++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH-hCCCCH
Confidence 85 89999999999999 999974
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-12 Score=135.17 Aligned_cols=218 Identities=11% Similarity=0.010 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 293 ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-----------------RAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+++|.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999999999887642 4688999999999999999999999988
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChh
Q 005125 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLE 435 (713)
Q Consensus 356 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (713)
..+....... ...+...++.++...|++++|+.++++++...+.
T Consensus 84 -~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (434)
T 4b4t_Q 84 -YMMQFAKSKT-----------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR 127 (434)
T ss_dssp -HHHTSCHHHH-----------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHccchHH-----------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 4443211000 0145666788888889999999999998876554
Q ss_pred hHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 005125 436 YYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYA 515 (713)
Q Consensus 436 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 515 (713)
... ....+.++..+|.+|...|+|++|+.++++++.......+-.. .+..+..+|.++...|+|++|..+
T Consensus 128 ~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~ 197 (434)
T 4b4t_Q 128 EKR----VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS------LVDVHLLESKVYHKLRNLAKSKAS 197 (434)
T ss_dssp SSC----CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCc----cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh------HHHHHHHHHHHHHHhCcHHHHHHH
Confidence 321 1134678899999999999999999999999875222110000 122344799999999999999999
Q ss_pred HHHHhccCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 516 YSEGLEHEA---YN----SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 516 ~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
|++++...+ .. ...+..+|.++...|++++|..+|.++++.
T Consensus 198 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 198 LTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999987643 22 456788899999999999999999999875
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=108.57 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=86.2
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.+.++| ..+...+..++.|++ |++|+.+.|.++++...++++.|+.||++..+.++..++|.++||+++|++|+.+
T Consensus 7 ~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 7 ITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp CGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred cCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 3445677 666666778888998 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++.|. ++++|.++|+.+.
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC-
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 999998 9999999998873
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=107.60 Aligned_cols=99 Identities=25% Similarity=0.438 Sum_probs=89.7
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+.+.+.|...+......++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||+++|++|
T Consensus 14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G 93 (114)
T 2oe3_A 14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93 (114)
T ss_dssp SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEEETT
T ss_pred eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEEeCC
Confidence 44556677888888777788888999 9999999999999999998899999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.+.++.|..++.|.++|+++
T Consensus 94 ~~~~~~~G~~~~~l~~~l~~~ 114 (114)
T 2oe3_A 94 QLIGKIIGANPTALEKGIKDL 114 (114)
T ss_dssp EEEEEEESSCHHHHHHHHHTC
T ss_pred eEEEEEeCCCHHHHHHHHHhC
Confidence 999999999989999999763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.1e-13 Score=135.50 Aligned_cols=139 Identities=21% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKA-----------------TYRSNKSAALIGLGRQIEALVECKE 318 (713)
Q Consensus 256 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 318 (713)
+..+..++.+|..++..|+|++|+.+|++++...|.+. .+++++|.+|..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999876 4899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 005125 319 AIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG 398 (713)
Q Consensus 319 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 398 (713)
+++++|++..+|+++|.+|..+|++++|+.+|++++. ++|++.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-l~p~~~------------------------------------ 298 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-YAPDDK------------------------------------ 298 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCH------------------------------------
Confidence 9999999999999999999999999999999999999 888873
Q ss_pred CCChHHHHHHHHHH-HHHccCHHHHHHHhhccccCChhh
Q 005125 399 ADSAPQVYALQAEA-LLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 399 p~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
.++..++.+ ....+..+++...|.+++...|++
T Consensus 299 -----~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 299 -----AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------------------------------
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 444444555 334455666777777777766654
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-12 Score=103.70 Aligned_cols=97 Identities=21% Similarity=0.385 Sum_probs=87.5
Q ss_pred eecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 615 FVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 615 ~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+.+.+.|...+. .....++.|++ |++|+.+.|.++++.+.++++.|+.+|++..+.++..++|.++||+++|++|
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 4555678888776 45677777888 9999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+.+.++.|.+.+.|.++|+++
T Consensus 83 ~~~~~~~G~~~~~l~~~l~~~ 103 (104)
T 2vim_A 83 KEVDRFSGANETKLRETITRH 103 (104)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHhh
Confidence 999999999999999999875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-12 Score=108.43 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK---EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.++.+|.++...|++++|+..|++++..+|++. .++. .+|.++...|++++|+..|++++...|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALY------------WLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 567889999999999999999999999999987 5555 6999999999999999999999999999
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 526 N---SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 526 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+ +.+++.+|.++..+|++++|+..|+++++.+|++..+..
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 9 899999999999999999999999999999998876544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=130.79 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIA----------------INSSKATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
+..+..+|..++..|+|++|+.+|+++++ .+|.+..++.++|.+|..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999 77788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 323 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+|+++.+++.+|.+|..+|++++|+.+|+++++ ++|++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-l~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE-IAPEDK 341 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCH
Confidence 999999999999999999999999999999999 888874
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=109.15 Aligned_cols=103 Identities=27% Similarity=0.428 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-------HRA 329 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 329 (713)
..+..++.+|..++..|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+|++++.+.|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccc
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSLANQK 360 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~ 360 (713)
++.+|.+|...|++++|+.+|++++. ..|+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~ 111 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA-EHRT 111 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH-hCCC
Confidence 99999999999999999999999999 8774
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-12 Score=111.83 Aligned_cols=101 Identities=26% Similarity=0.466 Sum_probs=91.9
Q ss_pred cceeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 612 NLVFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.+..+.+.+.|...+.. .+.+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||+++|
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 92 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 45666677889888876 6788888999 9999999999999999999999999999999999999999999999999
Q ss_pred ECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 688 KNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 688 ~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
.+|+.+.++.|.+++.|.++|+++.
T Consensus 93 ~~G~~~~~~~G~~~~~l~~~i~~~l 117 (153)
T 2wz9_A 93 KNSQKIDRLDGAHAPELTKKVQRHA 117 (153)
T ss_dssp ETTEEEEEEESSCHHHHHHHHHHHS
T ss_pred ECCEEEEEEeCCCHHHHHHHHHHHh
Confidence 9999999999998899999998763
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-13 Score=115.81 Aligned_cols=93 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred hHHHHHhhcCCceEEEeec----CchhHHHHHHHHHHHHhCCCcE--EEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTSPGMAVVLFCS----KAEHKQVLQLMEQVCKRFPSVN--FLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~~~--~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
++|...+...+..+++|++ |++|+.+.|.|++++++++.+. |++||+|+.+.++..|+|.++||+++|++|+.+
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v 104 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence 5788777777777777764 8999999999999999987788 999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++.|. +.+.|.++|+++.
T Consensus 105 ~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 105 GALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp -CEESCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 999999 8999999998763
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-12 Score=107.07 Aligned_cols=106 Identities=22% Similarity=0.417 Sum_probs=96.0
Q ss_pred ccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHhhHHHcCCCccc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+..+..+..+.+.++|...+......++.|++ |++|+.+.|.++++.+.+++ +.|+.||++..+.++..++|.++|
T Consensus 11 ~~~~~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~P 90 (121)
T 2j23_A 11 LVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90 (121)
T ss_dssp CCCCCCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSS
T ss_pred ccCCcceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCccc
Confidence 45566778888889999988777788888888 99999999999999998865 999999999999999999999999
Q ss_pred EEEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 683 AFKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
|+++|++|+.+.++.|.+++.|.++|+++.
T Consensus 91 t~~~~~~G~~~~~~~G~~~~~l~~~l~~~l 120 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGADPSKLQAAITQHS 120 (121)
T ss_dssp EEEEEETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred EEEEEECCeEEeeEcCCCHHHHHHHHHHhh
Confidence 999999999999999999999999998764
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=104.32 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=87.0
Q ss_pred chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.++|...+ ......++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 567888877 567788888998 9999999999999999997 499999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++.|. +.+.|.++|+++.
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHh
Confidence 999999 9999999998763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.4e-13 Score=112.71 Aligned_cols=105 Identities=19% Similarity=0.128 Sum_probs=89.7
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005125 459 AAGRFEDAVKTAQDAAQI---DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 535 (713)
.+|++++|+.+|++++++ +|++..++. ++|.++...|++++|+.+|+++++.+|+++.+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYL------------GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468999999999999999 466666665 79999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL-EAAIQDYEML 575 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~~A~~~~~~a 575 (713)
++..+|++++|+..|+++++..|+++.... ..|+..|.+.
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654 6666655543
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=104.41 Aligned_cols=98 Identities=27% Similarity=0.541 Sum_probs=89.7
Q ss_pred eecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
...+..+|...+......++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||+++|++|+.
T Consensus 12 ~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 91 (112)
T 1syr_A 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS 91 (112)
T ss_dssp EECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred EECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEEEEECCcE
Confidence 345667898888877788888999 999999999999999999899999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHhhh
Q 005125 693 VKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~g~~~~~~~~~~~~~~ 712 (713)
+.++.|.+.+.|.++|+++.
T Consensus 92 ~~~~~G~~~~~l~~~l~~~l 111 (112)
T 1syr_A 92 VDTLLGANDSALKQLIEKYA 111 (112)
T ss_dssp EEEEESCCHHHHHHHHHTTC
T ss_pred EEEEeCCCHHHHHHHHHHhh
Confidence 99999999999999998764
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=104.85 Aligned_cols=101 Identities=18% Similarity=0.405 Sum_probs=90.9
Q ss_pred cceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||++
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 86 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFL 86 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSEEE
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcEEE
Confidence 45666777888887754 6678888888 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.+.++.|.+.+.|.++|+++.
T Consensus 87 ~~~~g~~~~~~~g~~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 87 FIKDGEKVDSVVGGRKDDIHTKIVALM 113 (118)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEeCCeEEEEecCCCHHHHHHHHHHHh
Confidence 999999999999999999999998763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=106.32 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+.+++.+|.++...|++++|+.+|+++++.+|.+..++. .+|.++...|++++|+.+|+++++..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWL------------MKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4557788999999999999999999999999999988887 6999999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCh
Q 005125 526 --NSVLLCNRAACRSKL-GQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 526 --~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 561 (713)
+..++.++|.++..+ |++++|++++++++...|.++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 999999999999999999764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=109.13 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN---KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
..+..++.+|..+...|++++|+.+|+++++.+|++ ..++. .+|.++...|++++|+..|+++++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHR------------NRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHH------------HHHHHHHHHccHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999987 45554 799999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 522 HEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 522 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|+++.+++++|.++..+|++++|+.+|+++++++|++..++.
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 99999999999999999999999999999999999998876553
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=110.10 Aligned_cols=99 Identities=13% Similarity=0.211 Sum_probs=88.2
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+.+.+.|...+. ....+++.|++ |++|+.+.|.++++++.+++ +.|+.||+|+.+.++..++|.++||+++|
T Consensus 5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 84 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEE
Confidence 445567788888774 36677888999 99999999999999999976 99999999999999999999999999999
Q ss_pred ECCeEe---------eeecC-C-CHHHHHHHHHhh
Q 005125 688 KNGSRV---------KEIPG-H-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~---------~~~~g-~-~~~~~~~~~~~~ 711 (713)
++|+.+ .++.| . +.++|.++|++.
T Consensus 85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 999999 99999 6 999999999865
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=104.30 Aligned_cols=98 Identities=21% Similarity=0.420 Sum_probs=88.4
Q ss_pred ceeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+. .....++.|++ |++|+.+.|.++++.+.+ ++.|+.||++..+.++..++|.++||+++|+
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 93 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEEe
Confidence 556666678888776 56677888888 999999999999999988 8999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.+.++.|.+++.|.++|+++
T Consensus 94 ~G~~~~~~~G~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 94 NGEKVGDVVGASIAKVEDMIKKF 116 (117)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=132.87 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
+++++|.+|..+|++++|+.+|+++++++|++..++. ++|.++..+|++++|+.+|+++++++|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALF------------RRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 7889999999999999999999999999999998887 7999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 529 LLCNRAAC-RSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 529 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
++.+++.+ ....+..+++...|.+++...|++..
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999988 45567788888999999998887653
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=104.46 Aligned_cols=101 Identities=23% Similarity=0.400 Sum_probs=90.3
Q ss_pred cceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.+|++..+.++..++|.++||++
T Consensus 5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~ 84 (113)
T 1ti3_A 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFI 84 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEEE
T ss_pred ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccEEE
Confidence 45667777888887764 5567777888 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.+.++.|.+++.|.++|+++.
T Consensus 85 ~~~~G~~~~~~~g~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 85 FLKDGKLVDKTVGADKDGLPTLVAKHA 111 (113)
T ss_dssp EEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred EEeCCEEEEEEecCCHHHHHHHHHHhh
Confidence 999999999999999999999998763
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=101.37 Aligned_cols=98 Identities=28% Similarity=0.381 Sum_probs=87.5
Q ss_pred eeecchhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 614 VFVSSNERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 614 ~~~~~~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
..+.+.+.|...+. .....++.|++ |++|+.+.|.++++.+.+ +++.++.+|++..+.++..++|.++||+++|+
T Consensus 3 ~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 3 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp EECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEc
Confidence 44555578888776 56677778888 999999999999999998 78999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.+.++.|.+++.|.++|+++
T Consensus 83 ~G~~~~~~~g~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 83 NGVKVEEFAGANAKRLEDVIKAN 105 (106)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCHHHHHHHHHHh
Confidence 99999999999999999999875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-13 Score=145.07 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV 483 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 483 (713)
..+..+|.++...|++++|+.+|++++++.|+ .+.++.++|.+|..+|++++|+.+|+++++++|++..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 45566788899999999999999999999885 56689999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH----------
Q 005125 484 IKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAAC--RSKLGQYEKAVEDCT---------- 551 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~---------- 551 (713)
+. ++|.++..+|++++|+..|+++++++|++..++.+++.+ +...|++++|++.++
T Consensus 77 ~~------------~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 77 YY------------RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HH------------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred HH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 87 799999999999999999999999999999999999998 899999999999999
Q ss_pred -HHHHhCCCChHHHH
Q 005125 552 -AALIVMPSYSKARL 565 (713)
Q Consensus 552 -~al~~~p~~~~a~~ 565 (713)
++++++|++..+++
T Consensus 145 ~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 145 IESMTIEDEYSGPKL 159 (477)
T ss_dssp TSSCCCCTTCCSCCC
T ss_pred hhhcccccccccccc
Confidence 88888887654433
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=103.25 Aligned_cols=94 Identities=23% Similarity=0.391 Sum_probs=84.6
Q ss_pred hhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 619 NERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 619 ~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||++ ..+.++..++|.++||+++|++|+.+
T Consensus 12 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 91 (111)
T 2pu9_C 12 KDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV 91 (111)
T ss_dssp TTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSEE
T ss_pred hHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEE
Confidence 3577777763 5677778888 99999999999999999989999999998 78999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHhhh
Q 005125 694 KEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~~~~~~~~~~~~~~ 712 (713)
.++.|.+.+.|.++|+++.
T Consensus 92 ~~~~G~~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 92 GEVTGAKYDKLLEAIQAAR 110 (111)
T ss_dssp EEEESSCHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHhh
Confidence 9999999999999998875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=110.16 Aligned_cols=140 Identities=20% Similarity=0.126 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------ 326 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 326 (713)
+.++..+|..++..|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3578999999999999999999999999886532 2488899999999999999999999999875442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVY 406 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 406 (713)
..++..+|.++...|++++|+.++++++. +.+........ ..++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~-----------------------------------~~~~ 132 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA-IAQELKDRIGE-----------------------------------GRAC 132 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHccchHhH-----------------------------------HHHH
Confidence 66889999999999999999999999988 43322111111 2566
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
..+|.++...|++++|+.++++++.+..
T Consensus 133 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 133 WSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6777888888888888888877766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.9e-12 Score=112.25 Aligned_cols=147 Identities=14% Similarity=0.074 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 403 PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE 482 (713)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 482 (713)
..++..+|.++...|++++|+.++++++.+.+...... ..+.++..+|.++...|++++|+.+|++++.+.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 36788899999999999999999999998776532211 23568899999999999999999999999987554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 483 VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEA------YNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 483 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
... ....+.++|.++...|++++|+.++++++++.+ ....++..+|.++..+|++++|+.++++++++
T Consensus 85 ~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 85 RAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111 123445899999999999999999999998743 22568999999999999999999999999987
Q ss_pred CCC
Q 005125 557 MPS 559 (713)
Q Consensus 557 ~p~ 559 (713)
...
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 544
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=106.69 Aligned_cols=102 Identities=19% Similarity=0.407 Sum_probs=91.5
Q ss_pred cccceeecchhHHHHHhh----cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccE
Q 005125 610 GSNLVFVSSNERFRHFVT----SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPA 683 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~----~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt 683 (713)
+..+..+.+.++|...+. ....+++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt 102 (139)
T 3d22_A 23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPT 102 (139)
T ss_dssp CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccE
Confidence 446677777788888763 35678888988 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeEeeeecCCCHHHHHHHHHhh
Q 005125 684 FKIYKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+++|++|+.+.++.|.+.+.|.++|+++
T Consensus 103 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~ 130 (139)
T 3d22_A 103 FFFLRDGQQVDKLVGANKPELHKKITAI 130 (139)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEEEcCCeEEEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999875
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=101.77 Aligned_cols=95 Identities=22% Similarity=0.354 Sum_probs=87.5
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.|+.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 10 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 89 (109)
T 3tco_A 10 TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVD 89 (109)
T ss_dssp CTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred cHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEEE
Confidence 456788888777888888999 9999999999999999986 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|+++.
T Consensus 90 ~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 90 SLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEESCCCHHHHHHHHHHHC
T ss_pred eeeccCCHHHHHHHHHHHh
Confidence 99999 9999999998864
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=103.02 Aligned_cols=101 Identities=25% Similarity=0.386 Sum_probs=89.2
Q ss_pred cceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.++|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||+++.+.++..++|.++||++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (122)
T 2vlu_A 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 92 (122)
T ss_dssp CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEE
Confidence 34455667788877654 6677888888 99999999999999999988999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.+.++.|...+.|.++|+++.
T Consensus 93 ~~~~G~~~~~~~G~~~~~l~~~l~~~l 119 (122)
T 2vlu_A 93 FMKEGDVKDRVVGAIKEELTAKVGLHA 119 (122)
T ss_dssp EEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred EEeCCEEEEEEeCcCHHHHHHHHHHHh
Confidence 999999999999998899999998763
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=102.51 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=87.6
Q ss_pred ceeec-chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVS-SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~-~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+. +...|...+ .....+++.|++ |++|+.+.|.++++++.++++.|+.||+++.+.++..++|.++||+++|+
T Consensus 5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 84 (118)
T 2f51_A 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84 (118)
T ss_dssp SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence 44444 567787544 456677888888 99999999999999999988999999999999999999999999999999
Q ss_pred C----CeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 N----GSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~----g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+ |+.+.++.|..+++|+++|+++.
T Consensus 85 ~~~~~G~~~~~~~G~~~~~l~~~~~~~~ 112 (118)
T 2f51_A 85 KEGNEIKTLDQFVGADVSRIKADIEKFK 112 (118)
T ss_dssp EETTEEEEEEEEESCCHHHHHHHHHHHC
T ss_pred CCCCcceEEEeecCCCHHHHHHHHHHhh
Confidence 8 99999999998889999998863
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-11 Score=102.24 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+.+|++++..+|.+..++. .+|.++...|++++|+.+|++++...|.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT------------NQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH------------HHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 3567899999999999999999999999999999988877 6999999999999999999999999887
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 526 N-------SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS 559 (713)
Q Consensus 526 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 559 (713)
+ +.+++++|.++..+|++++|+.+|++++++.|+
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 7 899999999999999999999999999999884
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=108.55 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=86.3
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+.....+++.|++ |++|+.+.|.|+++++.++ .+.|+.||+++.+.++..++|.++||+++|++|+.+.
T Consensus 53 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~ 132 (155)
T 2ppt_A 53 DPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELA 132 (155)
T ss_dssp CHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 356788877566788888999 9999999999999999875 7999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.+||+++.
T Consensus 133 ~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 133 RAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHh
Confidence 99999 9999999998763
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=103.44 Aligned_cols=94 Identities=23% Similarity=0.385 Sum_probs=84.4
Q ss_pred hhHHHHHhh--cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 619 NERFRHFVT--SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 619 ~~~~~~~l~--~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
.++|...+. .....++.|++ |++|+.+.|.++++.+.++++.++.||++ +.+.++..++|.++||+++|++|+.+
T Consensus 25 ~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 104 (124)
T 1faa_A 25 KDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVV 104 (124)
T ss_dssp TTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEE
T ss_pred chhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEE
Confidence 456776665 45677888888 99999999999999999999999999998 68999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHhhh
Q 005125 694 KEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~~~~~~~~~~~~~~ 712 (713)
.++.|.+.++|.++|+++.
T Consensus 105 ~~~~G~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 105 GEVTGAKYDKLLEAIQAAR 123 (124)
T ss_dssp EEEESSCHHHHHHHHHHHT
T ss_pred EEEcCCCHHHHHHHHHHhh
Confidence 9999999999999998865
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=125.50 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH------hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT------KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
..+..+|..+...|++++|+.+|++++++.+.... ........+.++.++|.+|..+|++++|+.+|+++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45566677777777777777777777764332100 000001346688999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 478 PNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549 (713)
Q Consensus 478 p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 549 (713)
|++..++. .+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 304 p~~~~a~~------------~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALY------------RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887 6999999999999999999999999999999999999999999988887653
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=100.51 Aligned_cols=93 Identities=24% Similarity=0.433 Sum_probs=84.7
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.++|...+ ..+..++.|++ |++|+.+.|.++++.+.+++ +.++.||++..+.++..++|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 9 TDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp CTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred CHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 456777777 66778888888 99999999999999999965 999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 88 ~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEESCCCHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 99999 999999999875
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.3e-12 Score=106.13 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=83.1
Q ss_pred HhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 271 NKARFEDALALYDRAIAI---NSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAV 347 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 347 (713)
..|++++|+.+|+++++. +|++..+++.+|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccH
Q 005125 348 SHYKKSSSLANQKDI 362 (713)
Q Consensus 348 ~~~~~al~~~~p~~~ 362 (713)
.+|++++. ..|++.
T Consensus 82 ~~~~~al~-~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIA-ETSDDE 95 (117)
T ss_dssp HHHHHHHH-HHCCCH
T ss_pred HHHHHHHH-hCCCcH
Confidence 99999999 888875
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=99.10 Aligned_cols=94 Identities=31% Similarity=0.482 Sum_probs=85.5
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
.+.|...+......++.|++ |++|+.+.|.++++.+.++++.++.+|++..+.++..++|.++||+++|++|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 85 (104)
T 2e0q_A 6 SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEI 85 (104)
T ss_dssp TTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhhhc
Confidence 45677777667778888888 9999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhhh
Q 005125 697 PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~~ 712 (713)
.|. +.+.|.++|+++.
T Consensus 86 ~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 86 IGAVPREEIEIRIKNLL 102 (104)
T ss_dssp ESCCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 999 8999999998764
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-11 Score=99.53 Aligned_cols=93 Identities=23% Similarity=0.379 Sum_probs=83.6
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.++.+|+++.+.++..++|.++||+++|++|+.+.++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQL 87 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEEE
Confidence 4677666667788888988 9999999999999999986 489999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhhh
Q 005125 697 PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~~ 712 (713)
.|. +.+.|.++|+++.
T Consensus 88 ~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 88 IGYQPKEQLEAQLADVL 104 (105)
T ss_dssp ESCCCHHHHHHHTTTTT
T ss_pred ecCCCHHHHHHHHHHHh
Confidence 999 8899999998754
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=101.51 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=83.9
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
.++|...+ .....++.|++ |++|+.+.|.++++.+.++ ++.|+.||++..+.++..++|.++||+++|++|+.+.+
T Consensus 8 ~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 86 (112)
T 2voc_A 8 DQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86 (112)
T ss_dssp TTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEEE
T ss_pred HHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEEE
Confidence 45677777 66677788888 9999999999999998884 69999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhhh
Q 005125 696 IPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~~ 712 (713)
+.|. +.+.|.++|+++.
T Consensus 87 ~~G~~~~~~l~~~l~~~~ 104 (112)
T 2voc_A 87 SVGFKPKEALQELVNKHL 104 (112)
T ss_dssp EESCCCHHHHHHHHHTTS
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 9999 9999999998763
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=100.24 Aligned_cols=93 Identities=18% Similarity=0.335 Sum_probs=84.3
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+.+.|...+. .+..++.|++ |++|+.+.|.++++.+.+ +.+.++.+|++..+.++..++|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 11 TENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp CTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred ChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 4567777776 6677888888 999999999999999886 47999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+.++.|. +.+.|.++|++.
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~ 110 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQ 110 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred EEEeccCCcCHHHHHHHHHhc
Confidence 99999999 999999999875
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.9e-11 Score=99.94 Aligned_cols=99 Identities=25% Similarity=0.280 Sum_probs=86.6
Q ss_pred eeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 614 VFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 614 ~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
....+.++|...+ ......++.|++ |++|+.+.|.++++.+.+ +++.|+.||++..+.++..++|.++||+++|++
T Consensus 15 ~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 94 (119)
T 1w4v_A 15 FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKN 94 (119)
T ss_dssp EECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEET
T ss_pred EEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEeC
Confidence 3345667787765 445577777888 999999999999999888 579999999999999999999999999999999
Q ss_pred CeEeeeecCC-CHHHHHHHHHhhh
Q 005125 690 GSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 690 g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|+.+.++.|. +.+.|.++|+++.
T Consensus 95 G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 95 GDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHh
Confidence 9999999999 9999999998764
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=105.69 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=86.2
Q ss_pred cceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC---------CCcHhhHHHcCCCc
Q 005125 612 NLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV---------EDHPYIAKSEGVSS 680 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~---------d~~~~~~~~~~v~~ 680 (713)
.+..+ +.++|...+.. .+++.|++ |++|+.+.|.++++.+.++ +.|+.||+ +..+.++..++|.+
T Consensus 17 ~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~ 92 (135)
T 3emx_A 17 RLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGVEG 92 (135)
T ss_dssp EEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTCCS
T ss_pred ceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCCce
Confidence 33444 56788888766 88888998 9999999999999999987 99999999 88999999999999
Q ss_pred ccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 681 IPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 681 ~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+||+++|++|+.+.++.|. +.+.+.++|+++.
T Consensus 93 ~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 93 TPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999 8999999998763
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-11 Score=104.50 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=84.3
Q ss_pred chhHHH-HHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFR-HFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~-~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+...|. ..+.....+++.|++ |++|+.+.|.++++++.+++ +.|+.||++..+.++..++|.++||+++|++|+.+
T Consensus 12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 91 (140)
T 3hz4_A 12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV 91 (140)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE
T ss_pred chHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE
Confidence 456677 455566778888998 99999999999999998865 99999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhh
Q 005125 694 KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~ 711 (713)
.++.|. +.+.|.++|+++
T Consensus 92 ~~~~G~~~~~~l~~~l~~~ 110 (140)
T 3hz4_A 92 WEQVGQIYPSILKNAVRDM 110 (140)
T ss_dssp EEEESSCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 999999 899999999875
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=97.54 Aligned_cols=94 Identities=18% Similarity=0.355 Sum_probs=83.0
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+ ...+..++.|++ |++|+.+.|.++++.+.++ .+.++.||++..+.++..++|.++||+++|++|+.+.
T Consensus 9 ~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (108)
T 2trx_A 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 88 (108)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEE
Confidence 45676544 445667777888 9999999999999999985 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|++..
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 89 TKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhh
Confidence 99999 9999999998764
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-11 Score=104.67 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=86.4
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.+.|...+.....+++.|++ |++|+.+.|.++++.+.+ +.+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 44 ~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 123 (148)
T 3p2a_A 44 TAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMID 123 (148)
T ss_dssp CTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred CHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeEEE
Confidence 446788877777788888999 999999999999999998 67999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 124 ~~~G~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 124 MLNGAVPKAPFDNWLDEQ 141 (148)
T ss_dssp EESSCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 99999 999999999876
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=98.03 Aligned_cols=94 Identities=20% Similarity=0.406 Sum_probs=82.6
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+ ......++.|++ |++|+.+.|.++++.+.+ +.+.++.||++..+.++..++|.++||+++|++|+.+.
T Consensus 12 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 91 (112)
T 1t00_A 12 DDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAK 91 (112)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEEE
Confidence 35665544 445677788888 999999999999999998 56999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|+++.
T Consensus 92 ~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 92 TIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEESCCCHHHHHHHTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 99999 8999999998763
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-11 Score=112.23 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=89.6
Q ss_pred ccccccceeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||. +..+.+...|...+... ..+++.|++ |++|+.+.|.|.+++..|+.+.|+.||++ .+.++..++|.++
T Consensus 96 ~~~g~-v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~ 173 (217)
T 2trc_P 96 PRYGF-VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVL 173 (217)
T ss_dssp CCCCS-EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGC
T ss_pred cCCCe-EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCC
Confidence 34664 45565678888877554 567778998 99999999999999999999999999999 8889999999999
Q ss_pred cEEEEEECCeEeeeecCC-CH-------HHHHHHHHhhh
Q 005125 682 PAFKIYKNGSRVKEIPGH-QC-------ELLEKSVKLYS 712 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~-~~-------~~~~~~~~~~~ 712 (713)
||+++|++|+.+.++.|. +. +.|+.+|.++.
T Consensus 174 PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 174 PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred CEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 999999999999999998 43 89999998763
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=103.54 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=82.3
Q ss_pred chhHHHHHhhcCCceEEEeec-CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCc--ccEEEEEEC--Ce
Q 005125 618 SNERFRHFVTSPGMAVVLFCS-KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSS--IPAFKIYKN--GS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~-cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~--~Pt~~~~~~--g~ 691 (713)
+...|...+.....++++||+ |++|+++.|.|++++++| +.+.|++||+|+++.++..|||++ +||+++|++ |+
T Consensus 12 t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~g~ 91 (133)
T 2djk_A 12 GPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp CHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred ChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCcCc
Confidence 456777777667788888998 999999999999999999 569999999999999999999999 999999997 66
Q ss_pred Eeeeec--CC-CHHHHHHHHHhhh
Q 005125 692 RVKEIP--GH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~--g~-~~~~~~~~~~~~~ 712 (713)
. ..+. |. +.+.|.+||+++.
T Consensus 92 ~-~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 92 K-FPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp B-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred c-cCCCCccccCHHHHHHHHHHHH
Confidence 5 4665 88 9999999998763
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=104.36 Aligned_cols=99 Identities=8% Similarity=0.093 Sum_probs=83.8
Q ss_pred ceeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 613 LVFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+.+.++|...+.. ...+++.|++ |++|+.+.|.++++++.+ +.+.|+.||+++.+.++..++|.++||+++|
T Consensus 5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 84 (142)
T 1qgv_A 5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF 84 (142)
T ss_dssp SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEE
Confidence 4445667788876643 5677788999 999999999999999887 5799999999999999999999999999999
Q ss_pred ECCeEee---------eecCC--CHHHHHHHHHhh
Q 005125 688 KNGSRVK---------EIPGH--QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~---------~~~g~--~~~~~~~~~~~~ 711 (713)
++|+.+. ++.|. +.++|.++|++.
T Consensus 85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp ETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 9999987 46676 488999988764
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=97.21 Aligned_cols=95 Identities=19% Similarity=0.435 Sum_probs=83.6
Q ss_pred chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.++|...+ ......++.|++ |++|+.+.|.++++.+.++ .+.++.||++..+.++..++|.++||+++|++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 86 (107)
T 1dby_A 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC 86 (107)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred cHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEE
Confidence 345677655 345667777888 9999999999999999885 599999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++.|. +.+.|.++|+++.
T Consensus 87 ~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 999999 8899999998764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=104.41 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------HRAHH 331 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 331 (713)
+++.++.+|..++..|++++|+.+|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~a 353 (713)
.+|.++..+|+++.|+..+++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=97.80 Aligned_cols=93 Identities=19% Similarity=0.355 Sum_probs=84.3
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeee
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKE 695 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 695 (713)
.+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.++.+|++..+.++..++|.++||+++|++|+.+.+
T Consensus 8 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (109)
T 2yzu_A 8 DQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEV 87 (109)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeee
Confidence 35666666667788888888 9999999999999999986 69999999999999999999999999999999999999
Q ss_pred ecCC-CHHHHHHHHHhh
Q 005125 696 IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 696 ~~g~-~~~~~~~~~~~~ 711 (713)
+.|. +.+.|.++|+++
T Consensus 88 ~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 88 LVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp EESCCCHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 9999 899999999876
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-11 Score=102.98 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=85.1
Q ss_pred ccccccceeecchhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
.++|. +..+ +.++|...+... ..+++.|++ |++|+.+.|.|++++..++++.|+.||+++.+ ..++|.++
T Consensus 7 ~~~g~-v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~ 81 (135)
T 2dbc_A 7 GKFGE-LREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCL 81 (135)
T ss_dssp CCCCS-CEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCC
T ss_pred CCCCc-eEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCC
Confidence 34665 4445 678888877653 357777988 99999999999999999999999999999876 67999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
||+++|++|+.++++.|. +.+.|+++|+++
T Consensus 82 Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 82 PTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp SEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 999999999999999997 589999999876
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=100.73 Aligned_cols=99 Identities=17% Similarity=0.370 Sum_probs=85.7
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ .....+++.|++ |++|+.+.|.++++.+.++ ++.|+.||+++.+.++..++|.++||+++|+
T Consensus 24 v~~l-~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 102 (128)
T 2o8v_B 24 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 102 (128)
T ss_dssp SEEE-CTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEE
T ss_pred cEec-ChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEe
Confidence 3444 456777554 455677778888 9999999999999999985 6999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+.+.++.|. +.+.|.++|+++.
T Consensus 103 ~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 103 NGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 99999999999 8999999998764
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=97.03 Aligned_cols=93 Identities=23% Similarity=0.353 Sum_probs=82.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+ ...+..++.|++ |++|+.+.|.++++.+.++ ++.|+.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (107)
T 2i4a_A 9 DSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVID 88 (107)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEE
Confidence 35666554 455677777888 9999999999999998885 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 89 ~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 89 KKVGALPKSQLKAWVESA 106 (107)
T ss_dssp EEESCCCHHHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHhc
Confidence 99999 999999999875
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-10 Score=96.36 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=86.1
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ ......++.|++ |++|+.+.|.++++.+.++ .+.|+.||++..+.++..++|.++||+++|+
T Consensus 9 v~~l-~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 87 (115)
T 1thx_A 9 VITI-TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 87 (115)
T ss_dssp EEEC-CGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEEe-eccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEEc
Confidence 4444 456777654 455677778888 9999999999999999985 6999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+.+.++.|. +.+.|.++|+++.
T Consensus 88 ~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 88 GEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHh
Confidence 99999999999 8999999998763
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.1e-11 Score=102.58 Aligned_cols=99 Identities=16% Similarity=0.359 Sum_probs=86.2
Q ss_pred cceeecchhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 612 NLVFVSSNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.+..+.+.+.|...+... ..+++.|++ |++|+.+.|.++++.+.+ ++.|+.||+++.+.++..++|.++||+++|
T Consensus 21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence 355566677888877654 367777988 999999999999998877 699999999999999999999999999999
Q ss_pred E--CCe--EeeeecCCCHHHHHHHHHhh
Q 005125 688 K--NGS--RVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 688 ~--~g~--~~~~~~g~~~~~~~~~~~~~ 711 (713)
+ +|+ .+.++.|.+.+.|.++|+++
T Consensus 100 ~~~~g~g~~~~~~~G~~~~~l~~~l~~~ 127 (133)
T 3cxg_A 100 FNLNNEWVLVHTVEGANQNDIEKAFQKY 127 (133)
T ss_dssp EEETTEEEEEEEEESCCHHHHHHHHHHH
T ss_pred EecCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 7 888 88999999999999999876
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=102.24 Aligned_cols=95 Identities=23% Similarity=0.454 Sum_probs=78.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+...+.+++.|++ |++|+.+.|.++++.+.++ ++.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 39 ~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 118 (140)
T 1v98_A 39 DEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVA 118 (140)
T ss_dssp ----------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEE
Confidence 345677766555557777888 9999999999999999986 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|.++|+++.
T Consensus 119 ~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 119 TWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 99999 8999999998763
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-10 Score=94.54 Aligned_cols=93 Identities=25% Similarity=0.439 Sum_probs=82.2
Q ss_pred hhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|...+. .....++.|++ |++|+.+.|.++++.+.++ .+.++.+|++..+.++..++|.++||+++|++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (105)
T 1fb6_A 7 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE 86 (105)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEE
Confidence 356766554 45577777888 9999999999999999986 4999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 87 ~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 87 SIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEECCCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHhh
Confidence 99999 899999999875
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=105.13 Aligned_cols=99 Identities=11% Similarity=0.197 Sum_probs=79.3
Q ss_pred cceeecchhHHHHHhhc--CCceEEEeec---------CchhHHHHHHHHHHHHhC------CCcEEEEEeCCCcHhhHH
Q 005125 612 NLVFVSSNERFRHFVTS--PGMAVVLFCS---------KAEHKQVLQLMEQVCKRF------PSVNFLKVEVEDHPYIAK 674 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~--~~~~vv~f~~---------cg~c~~~~~~~~~l~~~~------p~~~~~~v~~d~~~~~~~ 674 (713)
.+..+ +...|...+.. ...++|+|++ ||+|+++.|.|+++++.+ +.+.|++||+|+.+.++.
T Consensus 19 ~vi~l-t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~ 97 (178)
T 3ga4_A 19 GVITV-TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVK 97 (178)
T ss_dssp SEEEC-CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHH
T ss_pred CCEEC-CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHH
Confidence 34443 45688887654 3357888887 999999999999999876 469999999999999999
Q ss_pred HcCCCcccEEEEEECCeEee------------ee---c--CCCHHHHHHHHHhh
Q 005125 675 SEGVSSIPAFKIYKNGSRVK------------EI---P--GHQCELLEKSVKLY 711 (713)
Q Consensus 675 ~~~v~~~Pt~~~~~~g~~~~------------~~---~--g~~~~~~~~~~~~~ 711 (713)
.+||+++||+++|++|.... ++ . |.+.+.|.+||.+.
T Consensus 98 ~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 98 DLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp HTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred HcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence 99999999999999886433 22 1 34899999999764
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=97.81 Aligned_cols=93 Identities=25% Similarity=0.341 Sum_probs=82.0
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
...|...+ ......++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 19 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 98 (121)
T 2i1u_A 19 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVK 98 (121)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCEEEE
Confidence 35565543 455677888888 9999999999999999884 6999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 99 ~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 99 RIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEESCCCHHHHHHHTCSC
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 99999 899999999765
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=100.09 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=81.7
Q ss_pred chhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhC------CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 618 SNERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF------PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 618 ~~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~------p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+.+.|...+. ....+++.|++ |++|+.+.|.|+++++.+ +.+.|+.||+++.+.++..++|.++||+++|.
T Consensus 21 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 100 (127)
T 3h79_A 21 TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYT 100 (127)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEe
Confidence 4567887775 46778888999 999999999999998642 56999999999999999999999999999999
Q ss_pred CCeEe--eeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRV--KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~--~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|..+ ..+.|. +.+.|.+||++.+
T Consensus 101 ~g~~~~~~~~~G~~~~~~l~~~i~~~s 127 (127)
T 3h79_A 101 RIDKQEPFEYSGQRYLSLVDSFVFQNT 127 (127)
T ss_dssp SSCSSSCEECCSCCCHHHHHHHHHHHC
T ss_pred CCCCCCceEecCCccHHHHHHHHHhcC
Confidence 98765 467788 9999999998753
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.3e-11 Score=102.28 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=78.6
Q ss_pred HhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-C
Q 005125 625 FVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-Q 700 (713)
Q Consensus 625 ~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 700 (713)
.....+.+++.|++ |++|+.+.|.++++.+.++ .+.++.||++..+.++..++|.++||+++|++|+.+.++.|. +
T Consensus 38 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~ 117 (128)
T 3ul3_B 38 VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVS 117 (128)
T ss_dssp TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCC
T ss_pred HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecCCCC
Confidence 33445677778998 9999999999999998885 699999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
.+.|.++|+++
T Consensus 118 ~~~l~~~l~~~ 128 (128)
T 3ul3_B 118 SNDLIALIKKH 128 (128)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 99999999864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-07 Score=101.88 Aligned_cols=294 Identities=8% Similarity=-0.038 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGR-QIEALVECKEAIRI---DPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~l 333 (713)
.+...+..+...+-.|+++.+..+|++++...| +..+|..........+. .+.....|+.++.. ++.+...|...
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 445566666666666999999999999999888 77888887777776663 45677888988875 78888888888
Q ss_pred HHHHH----HcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH--------HHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 334 AMLYF----RLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK--------CNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 334 a~~~~----~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
...+. .+++.+.+...|++++. ....+..........+.. .........+..|...|+.+....+..
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 87654 35678899999999998 644433221111111110 011112344555565566555443332
Q ss_pred hHHHHHHHHHHHHHc--c-----CHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 402 APQVYALQAEALLRL--Q-----RHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAA 474 (713)
Q Consensus 402 ~~~~~~~la~~~~~~--g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 474 (713)
....|......-... + ..+.....|++++...|. .+.+|+..+..+...|+.++|...|++|+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~----------~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY----------AEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223444322222111 0 134567899999887774 46689999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 475 QIDPNNKEVIKGVKMAK----------------------------AMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 475 ~~~p~~~~~~~~~~~~~----------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
.. |.+...|..+.... ....+...+....+.++.+.|...|.+| ...+..
T Consensus 241 ~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~ 318 (493)
T 2uy1_A 241 EM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVG 318 (493)
T ss_dssp HH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCC
T ss_pred hC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCC
Confidence 99 99877765443320 0012333444445567788888888888 333334
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHH
Q 005125 527 SVLLCNRAACRSKLG-QYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 527 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..+|...|.+....+ +.+.|...|+.+++..|+.+..+.
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 566666666666555 588888888888888777765543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=90.92 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
.++..++.+|..+...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 005125 337 YFRLG 341 (713)
Q Consensus 337 ~~~~g 341 (713)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98765
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=101.39 Aligned_cols=98 Identities=20% Similarity=0.319 Sum_probs=85.4
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
+..+ +...|...+.....+++.|++ |++|+.+.|.|+++.+.+. .+.|+.||++..+.++..++|.++||+++
T Consensus 19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 97 (140)
T 2dj1_A 19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97 (140)
T ss_dssp EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence 4444 567788888777788888998 9999999999999988763 39999999999999999999999999999
Q ss_pred EECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 687 YKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 687 ~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|++|+ +.++.|. +.+.|.++|+++.
T Consensus 98 ~~~G~-~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 98 LKKGQ-AVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp EETTE-EEECCSCCCHHHHHHHHHHHH
T ss_pred EECCc-EEEcCCCCCHHHHHHHHHHhc
Confidence 99999 7788898 9999999998763
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-10 Score=106.97 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=87.1
Q ss_pred ccccccceeecchhHHHHHhhc---CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTS---PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~---~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||. +..+.+...|...+.. ...+|+.||+ |++|+.+.|.|.+++..|+++.|+.||++. +.++..|+|.++
T Consensus 109 ~~~G~-V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~ 186 (245)
T 1a0r_P 109 PRYGF-VYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVL 186 (245)
T ss_dssp CCCCS-EEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTC
T ss_pred CCCCe-EEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCC
Confidence 34664 4556567889888753 4567777998 999999999999999999999999999987 778899999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 711 (713)
||+++|++|+.++++.|. +.+.|+.+|.++
T Consensus 187 PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 187 PTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp SEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred CEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 999999999999999887 245799998875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-11 Score=100.36 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+..++.+|.++...|++++|+..|+++++++|+++.++. ++|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYS------------NKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4568899999999999999999999999999999998887 7999999999999999999999999999
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005125 526 N------SVLLCNRAACRSKLGQYEKAVEDCTA 552 (713)
Q Consensus 526 ~------~~~~~~la~~~~~~g~~~~A~~~~~~ 552 (713)
+ ..+++.+|.++..+|++++|+..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 8 88999999999999998888776654
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-10 Score=98.28 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=82.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
..+|...+ .....+++.|++ |++|+.+.|.++++++.+ +.+.|+.||++..+.++..++|.++||+++|.+|
T Consensus 14 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 93 (133)
T 1x5d_A 14 DDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG 93 (133)
T ss_dssp TTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETT
T ss_pred HhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCC
Confidence 45777765 445667778988 999999999999999876 4699999999999999999999999999999999
Q ss_pred eEeeeecCC-CHHHHHHHHHhh
Q 005125 691 SRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.+.++.|. +.+.|.++|+++
T Consensus 94 ~~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 94 ESPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEEECSCCSHHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHHHH
Confidence 999999999 999999999875
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=97.68 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=81.5
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+.. .+++.|++ |++|+.+.|.++++.+.++ ++.|+.||+++.+.++..++|.++||+++|+
T Consensus 9 v~~l-~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 85 (126)
T 1x5e_A 9 VRVI-TDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85 (126)
T ss_dssp EEEC-CTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEe-cHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEe
Confidence 3444 44677776543 47788888 9999999999999998875 6999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|+ +.++.|. +.+.|.++|++.
T Consensus 86 ~G~-~~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 86 DGE-FRRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp TTE-EEECCSCCCHHHHHHHHHTC
T ss_pred CCe-EEEeecCCCHHHHHHHHHHH
Confidence 998 6788998 999999999875
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-10 Score=97.95 Aligned_cols=94 Identities=20% Similarity=0.302 Sum_probs=81.7
Q ss_pred chhHHHHHhhc------------CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 618 SNERFRHFVTS------------PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 618 ~~~~~~~~l~~------------~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+.++|...+.. ...+++.|++ |++|+.+.|.++++.+.++ .+.|+.||++..+.++..++|.++|
T Consensus 15 ~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 94 (136)
T 2l5l_A 15 TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIP 94 (136)
T ss_dssp CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSC
T ss_pred cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCC
Confidence 45677776642 4567888888 9999999999999999985 6999999999999999999999999
Q ss_pred EEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|+++| ++|+.+ .+.|. +.+.|.++|+++.
T Consensus 95 t~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 95 SILFIPMEGKPE-MAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEE-EEeCCCCHHHHHHHHHHHh
Confidence 99999 789887 67787 9999999998763
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=99.14 Aligned_cols=95 Identities=18% Similarity=0.357 Sum_probs=78.8
Q ss_pred chhHHHHHh-hcCCceEEEeec--Cc--------------hhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCC
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KA--------------EHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVS 679 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg--------------~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~ 679 (713)
+..+|...+ ...+.+++.|++ |+ +|+.+.|.++++.+.++ .+.++.||++..+.++..++|.
T Consensus 9 ~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 88 (123)
T 1oaz_A 9 TDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 88 (123)
T ss_dssp CSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTCC
T ss_pred ChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC
Confidence 345676544 456677788998 99 99999999999998885 6999999999999999999999
Q ss_pred cccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 680 SIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 680 ~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++||+++|++|+.+.++.|. +.+.|.++|++..
T Consensus 89 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 89 GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp BSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred ccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999 8999999998763
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.6e-10 Score=106.35 Aligned_cols=97 Identities=16% Similarity=0.331 Sum_probs=86.4
Q ss_pred ecchhHHHHH-hhcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 616 VSSNERFRHF-VTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 616 ~~~~~~~~~~-l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
..+.++|... +...+.+++.|++ |++|+.+.|.++++.+.+++ +.|+.||++..+.++..++|.++||+++|++|+
T Consensus 16 ~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 95 (222)
T 3dxb_A 16 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 95 (222)
T ss_dssp ECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTE
T ss_pred eCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCe
Confidence 3456778774 4556678888999 99999999999999999865 999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+.++.|. +.+.|.++|++..
T Consensus 96 ~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 96 VAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEeccccChHHHHHHHHhhc
Confidence 99999999 9999999998763
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-11 Score=104.41 Aligned_cols=102 Identities=19% Similarity=0.379 Sum_probs=89.7
Q ss_pred ccceeecchhHHHHHhhc----CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEE
Q 005125 611 SNLVFVSSNERFRHFVTS----PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAF 684 (713)
Q Consensus 611 ~~i~~~~~~~~~~~~l~~----~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~ 684 (713)
..+..+.+.+.|...+.. ....++.|++ |++|+.+.|.++++.+.++++.|+.||++..+.++..++|.++||+
T Consensus 14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 93 (130)
T 1wmj_A 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTF 93 (130)
T ss_dssp SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCCC
T ss_pred cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccceE
Confidence 345566667788877654 5677888888 9999999999999999998999999999999999999999999999
Q ss_pred EEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 685 KIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 685 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
++|++|+.+.++.|.+.+.|.++|+++.
T Consensus 94 ~~~~~g~~~~~~~g~~~~~l~~~l~~~~ 121 (130)
T 1wmj_A 94 LFIKDGAEADKVVGARKDDLQNTIVKHV 121 (130)
T ss_dssp CBCTTTTCCBCCCTTCTTTHHHHHHHHT
T ss_pred EEEeCCeEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999998899999998763
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=97.57 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=84.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+......++.|++ |++|+.+.|.++++.+.+ +.+.|+.+|.+..+.++..++|.++||+++|++|+
T Consensus 13 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 92 (120)
T 1mek_A 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred chhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCC
Confidence 346777777777778888998 999999999999999887 35899999999999999999999999999999999
Q ss_pred Ee--eeecCC-CHHHHHHHHHhhh
Q 005125 692 RV--KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~--~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+ ..+.|. +.+.|.++|+++.
T Consensus 93 ~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 93 TASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTS
T ss_pred cCCcccccCccCHHHHHHHHHhcc
Confidence 87 888898 9999999998763
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=97.62 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=76.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC----CCcHhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV----EDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~----d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+.+.|...+......++.|++ |++|+.+.|.++++.+.++ .+.++.++. +..+.++..++|.++||+++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G 97 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETT
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECC
Confidence 456777777777788888999 9999999999999998774 355543322 234578899999999999999999
Q ss_pred eEeeeecCC-CHHHHHHHHHh
Q 005125 691 SRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~~~~ 710 (713)
+.+.++.|. +.+.|.++|++
T Consensus 98 ~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 98 QINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp EEEEECCTTCCHHHHHHHHTC
T ss_pred EEEEEecCCCCHHHHHHHhhC
Confidence 999999999 99999999863
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=97.01 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=78.4
Q ss_pred hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEe--CCCcHhhHHHcCCCcccEEEEEE-CCeEeeeecCC-
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVE--VEDHPYIAKSEGVSSIPAFKIYK-NGSRVKEIPGH- 699 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~--~d~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~- 699 (713)
.....+++.|++ |++|+.+.|.++++.+.+ +++.|+.|| ++..+.++..++|.++||+++|. +|+.+.++.|.
T Consensus 24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~ 103 (126)
T 2l57_A 24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLM 103 (126)
T ss_dssp CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCC
T ss_pred hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCC
Confidence 345677788888 999999999999999998 689999999 99999999999999999999999 89999999998
Q ss_pred CHHHHHHHHHhhh
Q 005125 700 QCELLEKSVKLYS 712 (713)
Q Consensus 700 ~~~~~~~~~~~~~ 712 (713)
+.+.|.++|+++.
T Consensus 104 ~~~~l~~~l~~~~ 116 (126)
T 2l57_A 104 RKNNIETILNSLG 116 (126)
T ss_dssp CHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998763
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=96.95 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=80.2
Q ss_pred hhHHHH-HhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRH-FVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~-~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.++|.. .+......++.|++ |++|+.+.|.++++++.++ ++.|+.||++..+.++..++|.++||+++|..|..+.
T Consensus 10 ~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~ 89 (122)
T 3aps_A 10 PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKK 89 (122)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGGT
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCccc
Confidence 456754 44556678888998 9999999999999998886 7999999999999999999999999999998776677
Q ss_pred eecCC-----CHHHHHHHHHhh
Q 005125 695 EIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-----~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|++.
T Consensus 90 ~~~g~~~~~~~~~~l~~~l~~~ 111 (122)
T 3aps_A 90 SIWEEQINSRDAKTIAALIYGK 111 (122)
T ss_dssp EEEEEEECCSCHHHHHHHHHHH
T ss_pred eeeccccCcCCHHHHHHHHHHH
Confidence 77773 899999999875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.9e-10 Score=93.61 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..+|+.+|.+|..+|++++|+.+|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccc
Q 005125 356 LANQKD 361 (713)
Q Consensus 356 ~~~p~~ 361 (713)
+.|..
T Consensus 82 -~~~~~ 86 (115)
T 2kat_A 82 -AAQSR 86 (115)
T ss_dssp -HHHHH
T ss_pred -hcccc
Confidence 77754
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=96.87 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=80.5
Q ss_pred chhHHHHHhhc------------CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 618 SNERFRHFVTS------------PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 618 ~~~~~~~~l~~------------~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+...|...+.. ...+++.|++ |++|+.+.|.++++.+.++ .+.|+.||++..+.++..++|.++|
T Consensus 28 ~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P 107 (141)
T 3hxs_A 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107 (141)
T ss_dssp CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcC
Confidence 44567666654 4677788998 9999999999999999986 6999999999999999999999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|+++|. +|+.+ .+.|. +.+.|.++|+++.
T Consensus 108 t~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 108 TIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVL 138 (141)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHH
Confidence 999995 56555 78888 9999999998763
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=96.83 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=83.2
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ .....+++.|++ |++|+.+.|.++++.+.+++ +.|+.||++..+.++..++|.++||+++|.
T Consensus 19 v~~l-~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 97 (130)
T 2dml_A 19 VIEL-TPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFG 97 (130)
T ss_dssp SEEC-CTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEES
T ss_pred cEEC-CHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEe
Confidence 4444 346777744 456678888998 99999999999999999865 899999999999999999999999999999
Q ss_pred CCeE-eeeecCC-CHHHHHHHHHhh
Q 005125 689 NGSR-VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~-~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|.. +.++.|. +.+.|.++|.+.
T Consensus 98 ~~~~~~~~~~G~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 98 ANKNKPEDYQGGRTGEAIVDAALSA 122 (130)
T ss_dssp SCTTSCEECCSCCSHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCHHHHHHHHHHH
Confidence 8776 7889998 899999998765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=92.83 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005125 464 EDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 464 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 543 (713)
++|+..|+++++.+|+++.++. .+|.++...|++++|+..|+++++++|+++.+|+++|.+|..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRF------------TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 3588999999999999998887 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChH
Q 005125 544 EKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 544 ~~A~~~~~~al~~~p~~~~ 562 (713)
++|+..|++++++.|....
T Consensus 70 ~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999999876543
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=94.37 Aligned_cols=83 Identities=8% Similarity=0.093 Sum_probs=66.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCc--HhhHHHcCCCcccEEEEEECCeEeeeecCC-C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-Q 700 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 700 (713)
.+.++|.|++ |++|+++.+.+....+.. ..+.++.||++.. +.++..++|.++|||+||++|+++.++.|+ +
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG 97 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence 4678888999 999999987543322111 1156788888875 578899999999999999999999999999 9
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
++.+..+|++.
T Consensus 98 ~~~f~~~L~~~ 108 (116)
T 3dml_A 98 EDFFWPMLARL 108 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=103.93 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=86.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+...|...+.....+++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 182 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV 182 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCCE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCcee
Confidence 456788777777888889999 9999999999999999885 5999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|++.
T Consensus 183 ~~~G~~~~~~l~~~i~~~ 200 (210)
T 3apq_A 183 KYNGDRSKESLVAFAMQH 200 (210)
T ss_dssp ECCSCCCHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHh
Confidence 99998 999999999875
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7.8e-10 Score=96.54 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=83.6
Q ss_pred eeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHH---HHHHHhCCCcEEEEEeC----CCcHhhHHHcCCCccc
Q 005125 614 VFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLM---EQVCKRFPSVNFLKVEV----EDHPYIAKSEGVSSIP 682 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p~~~~~~v~~----d~~~~~~~~~~v~~~P 682 (713)
..+.+.+.+...+.. ...+++.|++ |++|+.+.|.+ +++.+.++++.++.||+ +..+.++..++|.++|
T Consensus 14 ~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~P 93 (134)
T 2fwh_A 14 TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLP 93 (134)
T ss_dssp EECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred EEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCC
Confidence 335566677766643 5677788988 99999999998 89998888899999999 5678899999999999
Q ss_pred EEEEE-ECCeEe--eeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIY-KNGSRV--KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~-~~g~~~--~~~~g~-~~~~~~~~~~~~ 711 (713)
|+++| ++|+.+ .++.|. +.++|.++|++.
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 99999 889998 789999 999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.6e-10 Score=90.77 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKAT-YRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.+.+|..++..|++++|+..|+++++.+|++.. +++.+|.++..+|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999988754
Q ss_pred CCHHHHHHHHHHHhhhhcccc
Q 005125 341 GEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~ 361 (713)
+.+.+++..|++++. .+|++
T Consensus 75 ~~~~~a~~~~~~~~~-~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY-NQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTH-HHHCC
T ss_pred HHHHHHHHHHHHHhc-cCccc
Confidence 567888999999988 77765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=85.73 Aligned_cols=84 Identities=29% Similarity=0.388 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.+.+++.+|.++...|++++|+.+|++++..+|++..++. .+|.++...|++++|+.+|+++++++|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4568889999999999999999999999999999988877 6999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 005125 526 NSVLLCNRAACRSKLG 541 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g 541 (713)
++.++.++|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988765
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-11 Score=103.13 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=79.7
Q ss_pred chhHHHHHhhcCC--ceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCC------cccEEE
Q 005125 618 SNERFRHFVTSPG--MAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVS------SIPAFK 685 (713)
Q Consensus 618 ~~~~~~~~l~~~~--~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~------~~Pt~~ 685 (713)
+.+.|...+.... .+++.|++ |++|+.+.|.|+++++.++ ++.|+.||+++.+.++..++|. ++||++
T Consensus 13 ~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~ 92 (137)
T 2dj0_A 13 NDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLI 92 (137)
T ss_dssp CTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEE
T ss_pred cHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEE
Confidence 3567887776554 66888998 9999999999999998884 6999999999999999999999 999999
Q ss_pred EEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 686 IYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 686 ~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
+|++|+.+.++.|. +.+.|.++|.+
T Consensus 93 ~~~~G~~~~~~~G~~~~~~l~~~l~~ 118 (137)
T 2dj0_A 93 LFQGGKEAMRRPQIDKKGRAVSWTFS 118 (137)
T ss_dssp EESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred EEECCEEEEEecCcCchHHHHHHHhc
Confidence 99999999999998 66666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=91.52 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHHHHHHHcccHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHH
Q 005125 498 LRGNLLFKASKYKEACYAYSEGLEHEAYNSV-LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL----EAAIQDY 572 (713)
Q Consensus 498 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~~A~~~~ 572 (713)
.+|..+...|++++|+..|+++++.+|+++. +++++|.+|..+|++++|+..|+++++++|++..++. .+++..|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNFY 84 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999 9999999999999999999999999999999998873 8899999
Q ss_pred HHHHHhCCCCH
Q 005125 573 EMLIREIPGNE 583 (713)
Q Consensus 573 ~~al~~~p~~~ 583 (713)
++++..+|++.
T Consensus 85 ~~~~~~~p~~~ 95 (99)
T 2kc7_A 85 NKDMYNQLEHH 95 (99)
T ss_dssp CCTTHHHHCCS
T ss_pred HHHhccCcccc
Confidence 99988888764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=88.50 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 255 NKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 325 (713)
+|.++.+++.+|.+++..|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 57777788888888888888888888888888888888888888888888888888888888888777553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=114.87 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI-----NSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPC 325 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 325 (713)
....+..+..+|+|++|+.+|++++++ .|++ +..+.++|.+|..+|+|++|+.++++++++ +|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344566677899999999999999986 3343 568899999999999999999999999986 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL----ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
-...+.+||.+|..+|++++|+.+|++|+.. +.|+++.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~-------------------------------------- 433 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI-------------------------------------- 433 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH--------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH--------------------------------------
Confidence 4678999999999999999999999999881 2333321
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHhhccc
Q 005125 402 APQVYALQAEALLRLQRHQEAHDSYNKSP 430 (713)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 430 (713)
...+..+++.++..++.+++|...|.++.
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455677788888888888888887763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-07 Score=99.13 Aligned_cols=311 Identities=10% Similarity=-0.085 Sum_probs=153.9
Q ss_pred hhHHHHHHHhhhhcCCCccccccccccccchhhhhcCC--CCchhhhHhh------cCCCCHHHHHHHHHHHH----Hhc
Q 005125 206 TVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQP--SGEFPQCISS------LNKLDPEELKFMGNEAY----NKA 273 (713)
Q Consensus 206 ~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~--~~~a~~~~~~------~~~~~~~~~~~lg~~~~----~~g 273 (713)
.+++...|++++...|+.. .|. ..+....... .+.....++. .++.+...|......+. .++
T Consensus 30 ~e~~~~iferal~~~ps~~---LW~---~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSYNLD---LWM---LYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp HHHHHHHHHHHSTTCCCHH---HHH---HHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred HHHHHHHHHHHhccCCCHH---HHH---HHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 3589999999999887422 232 2122221111 1334445554 36788888888887654 467
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH-HHHHH-------------HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSN-KSAAL-------------IGLGRQIEALVECKEAIRIDPC-YHRAHHRLAMLYF 338 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~-la~~~-------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 338 (713)
+.+.+...|++|+..-+....-++. ....- .....+..|...|+.+....+. ....|..+...-.
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 8899999999999853332221111 11100 0112223333333333332221 2223333222211
Q ss_pred Hc--CC-----HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 005125 339 RL--GE-----AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAE 411 (713)
Q Consensus 339 ~~--g~-----~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 411 (713)
.. +- .+.....|++++. ..|... ..++..+......|+.+.|...|++++.. |.+. .++...+.
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~-~~p~~~------~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~ 254 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILD-SFYYAE------EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGL 254 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHH-HTTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHH
T ss_pred cCCccCcchhhHHHHHHHHHHHHH-cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHh
Confidence 10 00 2334455666655 555543 23333344444555666666666666666 5553 33333333
Q ss_pred HHHHccCHHHHHHHhhcccc-----CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPK-----FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
......-++.....+..... ..+. ....+|...+..+...++.+.|...|++| ...+.....|.
T Consensus 255 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i- 323 (493)
T 2uy1_A 255 VMDEEAVYGDLKRKYSMGEAESAEKVFSK---------ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI- 323 (493)
T ss_dssp HTTCTHHHHHHHHHTC----------CHH---------HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH-
T ss_pred hcchhHHHHHHHHHHHhhccchhhhhccc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH-
Confidence 31100012222222110000 0011 01235555666666666777777777777 32222333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 487 VKMAKAMASARLRGNLLFKAS-KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
..|.+.+..+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 324 -----------~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 324 -----------YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp -----------HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred -----------HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344444444 4777777777777777777766666666667777777777777776
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=86.05 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=69.8
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 707 (713)
.++.|++ |++|+.+.|.++++.+.++ ++.++.+|+++.+.++..++|.++||+++ +|+. ++.|. +.+.|.++
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~~ 79 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFEA 79 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHHH
Confidence 5777888 9999999999999998886 79999999999999999999999999988 8877 78888 99999999
Q ss_pred HHhhh
Q 005125 708 VKLYS 712 (713)
Q Consensus 708 ~~~~~ 712 (713)
|+++.
T Consensus 80 l~~~l 84 (85)
T 1nho_A 80 INDEM 84 (85)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98764
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-09 Score=101.81 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=81.0
Q ss_pred HHHHHhhcCCce-EEEeec--CchhHHHHHHHHHHHHhCC-----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 621 RFRHFVTSPGMA-VVLFCS--KAEHKQVLQLMEQVCKRFP-----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 621 ~~~~~l~~~~~~-vv~f~~--cg~c~~~~~~~~~l~~~~p-----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+..+....+.. ++.|++ |++|+.+.|.+++++..++ ++.++.||+++.+.++..++|.++||+++|++|+.
T Consensus 125 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 204 (226)
T 1a8l_A 125 TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGED 204 (226)
T ss_dssp HHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEE
T ss_pred HHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCce
Confidence 444444445666 778998 9999999999999998875 79999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHHHhhh
Q 005125 693 VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.++.|. +.+.|.++|+++.
T Consensus 205 ~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 205 RVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHHHHhh
Confidence 9999999 8899999998764
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=93.44 Aligned_cols=86 Identities=10% Similarity=0.170 Sum_probs=77.5
Q ss_pred hcCCceEEEeec--CchhHHHHHHHH--HHHHhC-CCcEEEEEeC---CCcHhhHHHcCC---CcccEEEEE-ECCeEee
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLME--QVCKRF-PSVNFLKVEV---EDHPYIAKSEGV---SSIPAFKIY-KNGSRVK 694 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~~--~l~~~~-p~~~~~~v~~---d~~~~~~~~~~v---~~~Pt~~~~-~~g~~~~ 694 (713)
.....+++.|++ |++|+.+.|.|+ ++...+ +++.++.||+ +..+.++..++| .++||+++| ++|+.+.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence 456778888999 999999999999 888877 5799999999 999999999999 999999999 8999999
Q ss_pred eecC-------C-CHHHHHHHHHhhh
Q 005125 695 EIPG-------H-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g-------~-~~~~~~~~~~~~~ 712 (713)
+..| . +.+.|.++|++..
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHhc
Confidence 9998 4 8999999998764
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-09 Score=91.22 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=82.4
Q ss_pred eeecchhHHHHHhhc--CCceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeC-------CCcHhhHH
Q 005125 614 VFVSSNERFRHFVTS--PGMAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEV-------EDHPYIAK 674 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~--~~~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~-------d~~~~~~~ 674 (713)
..+.+.+.|...+.. ...+++.|++ |++|+.+.|.|+++.+.++ ++.|+.||+ +..+.++.
T Consensus 7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~ 86 (123)
T 1wou_A 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 86 (123)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHH
Confidence 344567788887765 5566666764 8999999999999999985 799999999 78899999
Q ss_pred HcCCCcccEEEEEECCeEeeeecCCCHHHHHHHHHh
Q 005125 675 SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 675 ~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
.++|.++||+++|.+|.++....|.+++.|.++|++
T Consensus 87 ~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 87 NLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122 (123)
T ss_dssp HHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred HCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence 999999999999999888877778889999999875
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=87.98 Aligned_cols=74 Identities=4% Similarity=0.095 Sum_probs=66.4
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 707 (713)
..+++|++ |++|+.+.++++++++.++ +.|.+||+++.++++..++++ +|++++|.+|+.+. .|. ++++|+++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~~ 105 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGAY 105 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHHH
Confidence 46788888 9999999999999998885 999999999999999999997 99999999999873 465 89999998
Q ss_pred H
Q 005125 708 V 708 (713)
Q Consensus 708 ~ 708 (713)
|
T Consensus 106 L 106 (107)
T 2fgx_A 106 L 106 (107)
T ss_dssp H
T ss_pred h
Confidence 7
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=85.29 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=69.8
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
..++.|++ |++|+.+.|.++++.+.++ ++.++.+|+++.+.++..++|.++||+++ +|+. ++.|. +.++|.+
T Consensus 4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 79 (85)
T 1fo5_A 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALVE 79 (85)
T ss_dssp EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHHH
T ss_pred eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHHH
Confidence 45777888 9999999999999999986 79999999999999999999999999988 8876 78888 9999999
Q ss_pred HHHhh
Q 005125 707 SVKLY 711 (713)
Q Consensus 707 ~~~~~ 711 (713)
+|+++
T Consensus 80 ~l~~~ 84 (85)
T 1fo5_A 80 AIKKR 84 (85)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-09 Score=86.70 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=67.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 288 INSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 288 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.+|+++.+++.+|.+|...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++. +.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE-VAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hhhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 76643
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=84.79 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=62.1
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
.+++|++ |++|+++.|+|+++...+ +.+||+++.+.++..++++ +|++++ .+|+.+. |. ++++|.++|
T Consensus 2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l 72 (87)
T 1ttz_A 2 ALTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL 72 (87)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence 4677888 999999999999876543 6899999999999999998 999988 8898885 66 999999999
Q ss_pred Hhh
Q 005125 709 KLY 711 (713)
Q Consensus 709 ~~~ 711 (713)
+++
T Consensus 73 ~~~ 75 (87)
T 1ttz_A 73 DAA 75 (87)
T ss_dssp HTC
T ss_pred HHH
Confidence 875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=109.03 Aligned_cols=136 Identities=10% Similarity=-0.040 Sum_probs=106.3
Q ss_pred HHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 005125 410 AEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQI-----DPNNKEVI 484 (713)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 484 (713)
+..+...|+|++|+..|++++++....... .....+..+.++|.+|..+|+|++|+.++++++++ .|+++...
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~--~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFAD--TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCT--TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 445667788888888888877542211000 00124668999999999999999999999999975 67777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 485 KGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH-----EAYN---SVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 485 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
. .+.++|.+|..+|+|++|+..|++|+++ .|++ .....+++.++..++.+++|...|.++.+.
T Consensus 394 ~---------~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 M---------AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp H---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4558999999999999999999999975 4555 556789999999999999999999988653
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=91.16 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=76.4
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC------CcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP------SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p------~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
...|...+ .....+++.|++ |++|+.+.|.|+++++.++ .+.|+.||++..+ ++. +|.++||+++|.+
T Consensus 14 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~ 90 (121)
T 2djj_A 14 AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPA 90 (121)
T ss_dssp TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECS
T ss_pred ccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeC
Confidence 35666664 455678888998 9999999999999998875 5899999999877 444 9999999999998
Q ss_pred CeE--eeeecCC-CHHHHHHHHHhhh
Q 005125 690 GSR--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 690 g~~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
|.. +.++.|. +.+.|.++|+++.
T Consensus 91 ~~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 91 GAKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp SCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred cCCCCceEecCCCCHHHHHHHHHhcc
Confidence 865 7889998 9999999998764
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=94.80 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=77.3
Q ss_pred hHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
..|...+.. ...+++.|++ |++|+.+.|.|+++++.+ +.+.|+.||++..+.++..++|.++||+++|.+|..+
T Consensus 15 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp TTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTT
T ss_pred CCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcc
Confidence 456655543 5667778888 999999999999999887 4699999999999999999999999999999988765
Q ss_pred e--eec-CC-CHHHHHHHHHhhh
Q 005125 694 K--EIP-GH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~--~~~-g~-~~~~~~~~~~~~~ 712 (713)
. .+. |. +.+.|.++|+++.
T Consensus 95 ~~~~~~gg~~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 95 NPIKFEGGNRDLEHLSKFIDEHA 117 (133)
T ss_dssp SCEECCSSCCSTTHHHHHHHHHS
T ss_pred cceEecCCCcCHHHHHHHHHHhc
Confidence 4 355 64 8999999998763
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-09 Score=100.18 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=84.7
Q ss_pred cceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+ +...|...+.....+++.|++ |++|+.+.|.++++++.++ .+.++.||++..+.++..++|.++||++
T Consensus 16 ~v~~l-~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~ 94 (241)
T 3idv_A 16 GVLVL-NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94 (241)
T ss_dssp TEEEE-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CcEEe-cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEE
Confidence 34433 456788888777888888999 9999999999999998763 3999999999999999999999999999
Q ss_pred EEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 686 IYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 686 ~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|++|+.+. +.|. +.+.|.++|++.
T Consensus 95 ~~~~g~~~~-~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 95 ILKKGQAVD-YEGSRTQEEIVAKVREV 120 (241)
T ss_dssp EEETTEEEE-CCSCSCHHHHHHHHHHH
T ss_pred EEcCCCccc-ccCcccHHHHHHHHhhc
Confidence 999999884 7777 999999999875
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.8e-09 Score=94.46 Aligned_cols=81 Identities=5% Similarity=-0.029 Sum_probs=68.0
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcC---CCcccEEEEEEC-CeEeeeecCCCHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEG---VSSIPAFKIYKN-GSRVKEIPGHQCEL 703 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~---v~~~Pt~~~~~~-g~~~~~~~g~~~~~ 703 (713)
+.+++.|++ ||+|+.+.|.++++++.++++.|+.|++|+.++++..++ |.++||+++|.+ |+.+.++ |..+..
T Consensus 55 k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~-g~~p~~ 133 (167)
T 1z6n_A 55 RYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRF-VERPQA 133 (167)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEE-ESSCHH
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEE-cCCCHH
Confidence 456777999 999999999999999999999999999999999998887 999999999997 4777777 555556
Q ss_pred HHHHHHhh
Q 005125 704 LEKSVKLY 711 (713)
Q Consensus 704 ~~~~~~~~ 711 (713)
+.+.|+++
T Consensus 134 ~~~~i~~~ 141 (167)
T 1z6n_A 134 VLDGGPQA 141 (167)
T ss_dssp HHHHCHHH
T ss_pred HHHhHHHH
Confidence 66665543
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=99.26 Aligned_cols=95 Identities=22% Similarity=0.313 Sum_probs=83.9
Q ss_pred cchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 617 SSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 617 ~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+.+.|...+.....+++.|++ |++|+.+.|.+.+++..+ +.+.|+.||++..+.++..++|.++||+++|++|
T Consensus 135 ~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 214 (241)
T 3idv_A 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG 214 (241)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC
Confidence 3456777777777788888999 999999999999998765 4599999999999999999999999999999999
Q ss_pred eEeeeecCC-CHHHHHHHHHhhh
Q 005125 691 SRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.+. +.|. +.+.|.+||.+..
T Consensus 215 ~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 215 RPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEEE-CCSCCSHHHHHHHHHHHT
T ss_pred eEEE-ecCCCCHHHHHHHHHhhh
Confidence 9888 7888 9999999998764
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.3e-10 Score=93.07 Aligned_cols=91 Identities=26% Similarity=0.454 Sum_probs=78.7
Q ss_pred HHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 621 RFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 621 ~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
.|...+ ...+..++.|++ |+.|+.+.|.++++.+.++ ++.++.+|++..+.++..++|.++|++++|++|+.+.++
T Consensus 10 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 89 (106)
T 2yj7_A 10 NFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRL 89 (106)
Confidence 444333 445567777888 9999999999999998886 699999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhh
Q 005125 697 PGH-QCELLEKSVKLY 711 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~ 711 (713)
.|. +.+.|.++|++.
T Consensus 90 ~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 90 VGAQPKEALKERIDKH 105 (106)
Confidence 999 889999998764
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=95.85 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=79.9
Q ss_pred chhHHHHHhhcCCceEEEeec-CchhHHHHHHHHHHHHhC---CCcEEEEEeCCC-----cHhhHHHcCCC--cccEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS-KAEHKQVLQLMEQVCKRF---PSVNFLKVEVED-----HPYIAKSEGVS--SIPAFKI 686 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~-cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~-----~~~~~~~~~v~--~~Pt~~~ 686 (713)
+..+|...+.....++|.|++ |+.|. +.|.|++++..+ +++.|+.||+++ .+.++..++|. ++|||.+
T Consensus 11 t~~nF~~~i~~~~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl~~ 89 (240)
T 2qc7_A 11 DTVTFYKVIPKSKFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYL 89 (240)
T ss_dssp CTTHHHHHGGGCSEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEEEE
T ss_pred CHHHHHHHHcCCCCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEEEE
Confidence 446788877777788888998 66666 999999999876 579999999665 89999999999 9999999
Q ss_pred EECCe--EeeeecCC-CHHHHHHHHHhh
Q 005125 687 YKNGS--RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~--~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|++|+ .+.++.|. +.+.|.+||++.
T Consensus 90 f~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 90 FRDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp EETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred EeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 99998 46788888 999999999875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-07 Score=87.68 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHhccCCCC-HHHHHHHH
Q 005125 463 FEDAVKTAQDAAQIDPN--NKEVIKGVKMAKAMASARLRGNLLFKA-----SKYKEACYAYSEGLEHEAYN-SVLLCNRA 534 (713)
Q Consensus 463 ~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la 534 (713)
..+|...++++++++|+ +..+|. .+|.+|... |+.++|..+|++|++++|+. ..+++..|
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~------------~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA 246 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWN------------VLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHH------------HHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHH------------HHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 57899999999999999 555776 599999985 99999999999999999975 99999999
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 005125 535 ACRSK-LGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 535 ~~~~~-~g~~~~A~~~~~~al~~~p~~ 560 (713)
..+.. .|++++|..++++++..+|..
T Consensus 247 ~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 247 DALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99988 599999999999999988873
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=108.51 Aligned_cols=95 Identities=20% Similarity=0.373 Sum_probs=86.3
Q ss_pred chhHHHHHhhcC---CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSP---GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~---~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+... ..+++.|++ |++|+.+.|.+++++..+++ +.|+.||++..+.++..++|.++||+++|++|+
T Consensus 7 ~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~ 86 (481)
T 3f8u_A 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE 86 (481)
T ss_dssp CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE
T ss_pred cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc
Confidence 456788888666 788888999 99999999999999999865 999999999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.+.++.|. +.+.|.+||.+..
T Consensus 87 ~~~~~~G~~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 87 EAGAYDGPRTADGIVSHLKKQA 108 (481)
T ss_dssp EEEECCSCSSHHHHHHHHHHHT
T ss_pred eeeeecCccCHHHHHHHHHhhc
Confidence 99999998 9999999998753
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=88.37 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=73.2
Q ss_pred cCCceEEEeec--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCC--CcHhhHHHcCCCcccEEEEE-ECCeEeeeecC
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVE--DHPYIAKSEGVSSIPAFKIY-KNGSRVKEIPG 698 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g 698 (713)
....+++.|++ |++|+.+.|.+ +.+.+.+ ..+.++.||++ ..+.++..++|.++||+++| ++|+.+.++.|
T Consensus 26 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred cCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 45677888888 99999999998 6666554 35889999998 57899999999999999999 68999999999
Q ss_pred C-CHHHHHHHHHhhh
Q 005125 699 H-QCELLEKSVKLYS 712 (713)
Q Consensus 699 ~-~~~~~~~~~~~~~ 712 (713)
. +.+.|.++|+++.
T Consensus 106 ~~~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 106 AEDAPELLKKVKLGV 120 (130)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 9 8999999998764
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-08 Score=104.67 Aligned_cols=93 Identities=22% Similarity=0.389 Sum_probs=82.9
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-------CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-------PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-------p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
...|...+.....+++.|++ |++|+.+.|.+++++..+ +.+.|+.||++..+.++..++|.++||+.+|++
T Consensus 12 ~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~ 91 (382)
T 2r2j_A 12 TENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRN 91 (382)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEET
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeC
Confidence 45787777777888888999 999999999999998765 239999999999999999999999999999999
Q ss_pred CeEee-eecCC-CHHHHHHHHHhh
Q 005125 690 GSRVK-EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~~~~-~~~g~-~~~~~~~~~~~~ 711 (713)
|+.+. .+.|. +.+.|.+||.+.
T Consensus 92 G~~~~~~~~G~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 92 GMMMKREYRGQRSVKALADYIRQQ 115 (382)
T ss_dssp TEEEEEECCSCCSHHHHHHHHHHH
T ss_pred CcEeeeeecCcchHHHHHHHHHHh
Confidence 99987 48898 999999999875
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-08 Score=98.11 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=80.9
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCC--CcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVE--DHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+..+|...+.. ...+++.|++ |++|+.+.|.++++++.+++ +.++.|++| ..+.++..++|.++||+++|++|+
T Consensus 23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 45788888854 4568888999 99999999999999999864 888888887 689999999999999999999987
Q ss_pred -----------------EeeeecCC-CHHHHHHHHHhh
Q 005125 692 -----------------RVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 692 -----------------~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+..+.|. +.+.|.+||.+.
T Consensus 103 ~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 103 IDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140 (298)
T ss_dssp C-------------CCCEEEECCSCCSHHHHHHHHHTT
T ss_pred eeecccccccccccccccceeecCCcCHHHHHHHHHHh
Confidence 35677888 999999999765
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=96.77 Aligned_cols=99 Identities=9% Similarity=0.159 Sum_probs=80.6
Q ss_pred cceeecchhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeC--CCcHhhHHHcCCCccc
Q 005125 612 NLVFVSSNERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEV--EDHPYIAKSEGVSSIP 682 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~--d~~~~~~~~~~v~~~P 682 (713)
.+..+ +...|...+... ..+++.|++ |++|+.+.|.++++++.++ .+.|+.||+ +..+.++..++|.++|
T Consensus 13 ~v~~l-~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~P 91 (244)
T 3q6o_A 13 PLTLL-QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFP 91 (244)
T ss_dssp SSEEE-CTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSS
T ss_pred CceeC-ChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccC
Confidence 33433 345677766444 677778999 9999999999999999885 599999999 7789999999999999
Q ss_pred EEEEEECCeEee-----eecCCCHHHHHHHHHhh
Q 005125 683 AFKIYKNGSRVK-----EIPGHQCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~g~~~~-----~~~g~~~~~~~~~~~~~ 711 (713)
|+++|..|+.++ .+.|.+.+.|.++|.++
T Consensus 92 t~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~ 125 (244)
T 3q6o_A 92 TVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDA 125 (244)
T ss_dssp EEEEECTTCCSSSCEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHH
Confidence 999999854433 67777999999998765
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=94.86 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=76.8
Q ss_pred chhHHHHHhhcCCceEEEee--c--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCC-----cHhhHHHcCCC--ccc
Q 005125 618 SNERFRHFVTSPGMAVVLFC--S--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVED-----HPYIAKSEGVS--SIP 682 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~--~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~-----~~~~~~~~~v~--~~P 682 (713)
+..+|...+.....++|.|+ + || +.|.|++++..+ +.+.|++||+++ ++.++..++|. ++|
T Consensus 22 t~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~P 97 (248)
T 2c0g_A 22 DELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP 97 (248)
T ss_dssp CTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCC
Confidence 45678887777778888899 5 77 999999999876 579999999998 89999999999 999
Q ss_pred EEEEEECCeE--eeee--cCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYKNGSR--VKEI--PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~~g~~--~~~~--~g~-~~~~~~~~~~~~~ 712 (713)
||++|+ |.. +..+ .|. +.+.|.+||++..
T Consensus 98 Tl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~ 131 (248)
T 2c0g_A 98 SIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANT 131 (248)
T ss_dssp EEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred eEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence 999999 873 5556 777 9999999998763
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-08 Score=106.65 Aligned_cols=98 Identities=12% Similarity=0.293 Sum_probs=87.4
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +..+|...+.....+++.|++ ||+|+.+.|.+++++..+. ++.|+.||++..+.++..++|.++||+++|+
T Consensus 16 v~~l-~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 94 (504)
T 2b5e_A 16 VVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFK 94 (504)
T ss_dssp CEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEC-CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEe
Confidence 4443 456788888777788888999 9999999999999999885 4999999999999999999999999999999
Q ss_pred CCeE--eeeecCC-CHHHHHHHHHhh
Q 005125 689 NGSR--VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~--~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|+. +.++.|. +.+.|.+||.+.
T Consensus 95 ~g~~~~~~~~~G~~~~~~l~~~l~~~ 120 (504)
T 2b5e_A 95 NSDVNNSIDYEGPRTAEAIVQFMIKQ 120 (504)
T ss_dssp TTCTTCEEECCSCCSHHHHHHHHHHH
T ss_pred CCccccceeecCCCCHHHHHHHHHHh
Confidence 9997 8889998 999999999865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-07 Score=81.80 Aligned_cols=110 Identities=9% Similarity=0.044 Sum_probs=51.5
Q ss_pred hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--
Q 005125 382 KRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-- 459 (713)
Q Consensus 382 ~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-- 459 (713)
+++++|+..|+++.+.+.... . +|.+|...+..++|+.+|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~------------g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG---C--LSLVSNSQINKQKLFQYLSKACEL------------NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCCCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHcCC
Confidence 345555555555555543321 1 455555444555555555554432 123344445555544
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhcc
Q 005125 460 --AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEH 522 (713)
Q Consensus 460 --~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 522 (713)
.+++++|+.+|+++.+. .++.+.. ++|.+|.. .+++++|+.+|+++.+.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~------------~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCL------------ILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHH------------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHH------------HHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44555555555555443 2333333 34544444 44555555555554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-07 Score=93.32 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 398 GADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID 477 (713)
Q Consensus 398 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 477 (713)
+|.. +.++..++..+...|++++|+..+++|+.++|. ...+..+|.++...|++++|++.|++|+.++
T Consensus 273 ~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-----------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 273 LNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-----------WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3444 478888888888899999999999999998863 3467889999999999999999999999999
Q ss_pred CCCHH
Q 005125 478 PNNKE 482 (713)
Q Consensus 478 p~~~~ 482 (713)
|....
T Consensus 341 P~~~t 345 (372)
T 3ly7_A 341 PGANT 345 (372)
T ss_dssp CSHHH
T ss_pred CCcCh
Confidence 98753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=82.98 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=98.1
Q ss_pred cCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005125 417 QRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASA 496 (713)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 496 (713)
+++++|+.+|+++.+... +.+. +|.+|...+.+++|+.+|+++.+. .++.+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~------------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~----------- 61 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE------------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCR----------- 61 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC------------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHH-----------
T ss_pred cCHHHHHHHHHHHHcCCC------------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHH-----------
Confidence 578999999999987542 2233 899999999999999999999986 5677776
Q ss_pred HHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 005125 497 RLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMP 558 (713)
Q Consensus 497 ~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 558 (713)
++|.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+...
T Consensus 62 -~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 62 -FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp -HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 79999998 89999999999999987 689999999999999 9999999999999998743
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-08 Score=94.20 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=77.0
Q ss_pred hHHHHHhhcCCce-EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeee
Q 005125 620 ERFRHFVTSPGMA-VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEI 696 (713)
Q Consensus 620 ~~~~~~l~~~~~~-vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 696 (713)
..|...+...+.. ++.|++ |++|+.+.|.+++++..++++.++.||++..+.++..++|.++||+++ +|+ +.++
T Consensus 126 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~~ 202 (229)
T 2ywm_A 126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAEF 202 (229)
T ss_dssp HHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEEE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEEe
Confidence 4555555455555 566888 999999999999999999899999999999999999999999999988 888 7778
Q ss_pred cCC-CHHHHHHHHHhh
Q 005125 697 PGH-QCELLEKSVKLY 711 (713)
Q Consensus 697 ~g~-~~~~~~~~~~~~ 711 (713)
.|. +.+.|.++|++.
T Consensus 203 ~G~~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 203 VGAQPENAFLGYIMAV 218 (229)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 998 889999999765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-08 Score=95.88 Aligned_cols=139 Identities=8% Similarity=-0.057 Sum_probs=101.5
Q ss_pred CCCCH--HHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHH-HHHH--H
Q 005125 255 NKLDP--EELKFMGNEAYNKA---RFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQ-------IEALV-ECKE--A 319 (713)
Q Consensus 255 ~~~~~--~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~~-~~~~--a 319 (713)
.|.++ ..++..|..++..+ ++.+|+.+|++|++++|+++.++..++.+|.....+ .+++. .++. +
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 44444 34667788777654 458999999999999999999999888888632111 11111 1221 2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGA 399 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 399 (713)
+..+|..+.++..+|..+...|++++|+..+++++. ++|.. ..+..++..+...|++++|++.|.+++.++|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln~s~-------~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMSW-------LNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 355788899999999999989999999999999999 88652 3455666777777777777777777777777
Q ss_pred CC
Q 005125 400 DS 401 (713)
Q Consensus 400 ~~ 401 (713)
..
T Consensus 342 ~~ 343 (372)
T 3ly7_A 342 GA 343 (372)
T ss_dssp SH
T ss_pred Cc
Confidence 65
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-08 Score=92.53 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=83.3
Q ss_pred cccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHh-hHHHcCC--C
Q 005125 606 DMKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPY-IAKSEGV--S 679 (713)
Q Consensus 606 ~~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~-~~~~~~v--~ 679 (713)
..++|..+......+.+.........+++.|++ |++|+.+.|.|.++.+.+ .++.|+.|+++..+. ++..+++ .
T Consensus 23 ~~~~~~~i~w~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 102 (164)
T 1sen_A 23 GKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGG 102 (164)
T ss_dssp CTTSCTTSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCS
T ss_pred cccccccccccCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCC
Confidence 345666666654445666666667888888999 999999999999876554 247788888888776 7888888 6
Q ss_pred cccEEEEE-ECCeEeeeecC-----------CCHHHHHHHHHhh
Q 005125 680 SIPAFKIY-KNGSRVKEIPG-----------HQCELLEKSVKLY 711 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g-----------~~~~~~~~~~~~~ 711 (713)
++||++|| ++|+.+.++.| .+.++|.++|+++
T Consensus 103 ~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 103 YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp CSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 69999999 79999999998 3778888888765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=75.28 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 255 NKLDPEELKFMGNEAYNKAR---FEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY 326 (713)
Q Consensus 255 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 326 (713)
+|.+++.+..+|.+++..++ .++|..+++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46777777777777765554 5777777777777777777777777777777777777777777777777663
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9.7e-08 Score=98.69 Aligned_cols=93 Identities=14% Similarity=0.256 Sum_probs=79.5
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHH------HHHHHHHHhC--CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVL------QLMEQVCKRF--PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~------~~~~~l~~~~--p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+|...+.....+++.|++ ||+|.... |.++.++..+ .++.|++||++..+.++..++|.++||+.+|
T Consensus 19 t~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f 98 (367)
T 3us3_A 19 NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVF 98 (367)
T ss_dssp CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEE
Confidence 456788888778888999999 99974433 5788888765 2599999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|+.+ .+.|. +.+.|.+||.+.
T Consensus 99 ~~G~~~-~y~G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 99 KEDEVI-EYDGEFSADTLVEFLLDV 122 (367)
T ss_dssp ETTEEE-ECCSCCSHHHHHHHHHHH
T ss_pred ECCcEE-EeCCCCCHHHHHHHHHHh
Confidence 999876 67788 999999999875
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.2e-08 Score=99.23 Aligned_cols=92 Identities=14% Similarity=0.276 Sum_probs=81.2
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHH-------HHHHHHhCC--CcEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQL-------MEQVCKRFP--SVNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~-------~~~l~~~~p--~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
+..+|...+.....+++.|++ || |+.+.|. ++++++.+. ++.++.||++..+.++..++|.++||+.+
T Consensus 17 ~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~ 95 (350)
T 1sji_A 17 TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYV 95 (350)
T ss_dssp CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEE
Confidence 457788888777888888999 99 9888777 888887763 59999999999999999999999999999
Q ss_pred EECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 687 YKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 687 ~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|++|+ +.++.|. +.+.|.+||.+.
T Consensus 96 ~~~g~-~~~~~G~~~~~~l~~~i~~~ 120 (350)
T 1sji_A 96 LKGDR-TIEFDGEFAADVLVEFLLDL 120 (350)
T ss_dssp EETTE-EEEECSCCCHHHHHHHHHTT
T ss_pred EECCc-EEEecCCCCHHHHHHHHHHh
Confidence 99999 5688898 999999999875
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-08 Score=88.08 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=68.8
Q ss_pred ccccccceeecch-hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHH--hCCCcEEEEEeCC-CcHhhHHHcCCCc
Q 005125 607 MKFGSNLVFVSSN-ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCK--RFPSVNFLKVEVE-DHPYIAKSEGVSS 680 (713)
Q Consensus 607 ~~~g~~i~~~~~~-~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~--~~p~~~~~~v~~d-~~~~~~~~~~v~~ 680 (713)
.+||..+....+. +.+........++++.|++ |++|+.+.|.+.+..+ .+.+..|+.|++| +.+.++..++|.+
T Consensus 21 ~~~~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~ 100 (151)
T 3ph9_A 21 RGWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQY 100 (151)
T ss_dssp TTSCTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCC
T ss_pred ccccCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCC
Confidence 5678887776433 3445555667888888999 9999999999886421 1222345555554 4556778899999
Q ss_pred ccEEEEEE-CCeEeeeecCC
Q 005125 681 IPAFKIYK-NGSRVKEIPGH 699 (713)
Q Consensus 681 ~Pt~~~~~-~g~~~~~~~g~ 699 (713)
+||++||. +|+.+.++.|.
T Consensus 101 ~PT~~f~~~~G~~v~~~~G~ 120 (151)
T 3ph9_A 101 VPRIMFVDPSLTVRADIAGR 120 (151)
T ss_dssp SSEEEEECTTSCBCTTCCCS
T ss_pred CCEEEEECCCCCEEEEEeCC
Confidence 99999999 99999999996
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-09 Score=91.80 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=73.7
Q ss_pred HhhcCCceEEEeec--CchhHHHHHHH---HHHHHhCC-CcEEEEEeC--CCcHhhHHHcCCCcccEEEEE--ECCeE--
Q 005125 625 FVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRFP-SVNFLKVEV--EDHPYIAKSEGVSSIPAFKIY--KNGSR-- 692 (713)
Q Consensus 625 ~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p-~~~~~~v~~--d~~~~~~~~~~v~~~Pt~~~~--~~g~~-- 692 (713)
.......+++.|++ |++|+.+.|.+ +++.+.++ .+.++.||+ ++.+.++..++|.++||+++| ++|+.
T Consensus 15 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~ 94 (130)
T 2lst_A 15 AQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE 94 (130)
Confidence 33445567777888 99999999999 88888775 488999998 467889999999999999999 67988
Q ss_pred eeeecCC-CHHHHHHHHHhh
Q 005125 693 VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.++.|. +.+.|.++|+++
T Consensus 95 ~~~~~G~~~~~~l~~~l~~~ 114 (130)
T 2lst_A 95 VGRLFGSRPRAEFLKELRQV 114 (130)
Confidence 8999998 889999998875
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=90.72 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=75.3
Q ss_pred hhHHHHHh-h--cCCceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECC
Q 005125 619 NERFRHFV-T--SPGMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 619 ~~~~~~~l-~--~~~~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+.+...+ . .....+++|++ |++|+.+.|.++++++..+.+.|+.||+++ .+.++..++|.++||+.+|++|
T Consensus 9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g 88 (226)
T 1a8l_A 9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG 88 (226)
T ss_dssp HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence 34455555 2 23344566765 999999999999999877889999999999 9999999999999999999999
Q ss_pred eEe-eeecCC-CHHHHHHHHHhh
Q 005125 691 SRV-KEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~-~~~~g~-~~~~~~~~~~~~ 711 (713)
+.+ .++.|. +.+.+.+++...
T Consensus 89 ~~~~~~~~G~~~~~~l~~~l~~~ 111 (226)
T 1a8l_A 89 KDFGVRYFGLPAGHEFAAFLEDI 111 (226)
T ss_dssp BCCSEEEESCCCTTHHHHHHHHH
T ss_pred ceeeEEEeccCcHHHHHHHHHHH
Confidence 875 678888 778888887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=73.59 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 289 NSSKATYRSNKSAALIGLGR---QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 289 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|++++. .+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~-~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD-SNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-CCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC
Confidence 68999999999999987766 79999999999999999999999999999999999999999999999 88873
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-07 Score=80.49 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC----------------------cHhhHHHcCCCcccEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED----------------------HPYIAKSEGVSSIPAF 684 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~----------------------~~~~~~~~~v~~~Pt~ 684 (713)
....++.|++ |++|+...|.+.++.+.++++.++.|+.+. ...++..++|.++|++
T Consensus 24 ~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 103 (136)
T 1lu4_A 24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103 (136)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEE
Confidence 4567777888 999999999999999999899999999987 6788899999999999
Q ss_pred EEE-ECCeEeeeec---CC-CHHHHHHHHHhhh
Q 005125 685 KIY-KNGSRVKEIP---GH-QCELLEKSVKLYS 712 (713)
Q Consensus 685 ~~~-~~g~~~~~~~---g~-~~~~~~~~~~~~~ 712 (713)
+++ ++|+.+ .+. |. +.++|.++|++..
T Consensus 104 ~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 104 VFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred EEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 999 689888 888 88 9999999998753
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=83.90 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=71.3
Q ss_pred hcCCceEEEee-c--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCCCcH-----------hhHHHcCCCcccEEEEE-
Q 005125 627 TSPGMAVVLFC-S--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVEDHP-----------YIAKSEGVSSIPAFKIY- 687 (713)
Q Consensus 627 ~~~~~~vv~f~-~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d~~~-----------~~~~~~~v~~~Pt~~~~- 687 (713)
.....+++.|+ + |++|+.+.|.+ +++.+.+ .++.++.||.+..+ .++..++|.++||++++
T Consensus 45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d 124 (154)
T 2ju5_A 45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID 124 (154)
T ss_dssp HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence 34567788898 6 99999999999 7776654 56899999998764 88999999999999999
Q ss_pred ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 688 KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 688 ~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
++|+.+.++ |. +.+.+.++|++..
T Consensus 125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 125 AEGKQLARM-GFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp TTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence 789999999 87 4888999988753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-07 Score=74.08 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAIN-------SSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA 329 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 329 (713)
-+++.++.+|..++..|+|..|+.+|++|++.. +....++..+|.++.++|++++|+.++++++.++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 356779999999999999999999999999863 3457889999999999999999999999999999999998
Q ss_pred HHHHH
Q 005125 330 HHRLA 334 (713)
Q Consensus 330 ~~~la 334 (713)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 88876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-07 Score=84.80 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=99.0
Q ss_pred hhhhHhhcCCCCHHHHHHHHHHHHH---h--c------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CC
Q 005125 247 FPQCISSLNKLDPEELKFMGNEAYN---K--A------RFEDALALYDRAIAINSS--KATYRSNKSAALIGL-----GR 308 (713)
Q Consensus 247 a~~~~~~~~~~~~~~~~~lg~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~ 308 (713)
-...+....|.+++.++-.|..... . | ...+|...++++++++|+ +..+|..+|.+|... |+
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3445556889999999888877754 1 2 367899999999999999 677999999999996 99
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhcccc
Q 005125 309 QIEALVECKEAIRIDPCY-HRAHHRLAMLYFR-LGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 309 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.++|..+|+++++++|+. ..+++.+|..+.. .|++++|..++++++. .+|..
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~-a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA-IDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-CCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCC
Confidence 999999999999999975 9999999999988 4999999999999999 87773
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=89.35 Aligned_cols=77 Identities=25% Similarity=0.204 Sum_probs=68.6
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhC-----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRF-----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCE 702 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~-----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 702 (713)
..++.|++ |++|+.+.|.+++++..+ +++.+..||++..+.++..++|.++||+++ +|+.+ +.|. +.+
T Consensus 140 ~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~~~~ 215 (243)
T 2hls_A 140 VHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVPYEE 215 (243)
T ss_dssp EEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHH
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCCCHH
Confidence 44666888 999999999999999887 789999999999999999999999999887 88865 7788 899
Q ss_pred HHHHHHHhh
Q 005125 703 LLEKSVKLY 711 (713)
Q Consensus 703 ~~~~~~~~~ 711 (713)
.|.++|++.
T Consensus 216 ~l~~~l~~~ 224 (243)
T 2hls_A 216 DFLDYVKSA 224 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=71.17 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=58.5
Q ss_pred EEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHH
Q 005125 634 VLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 634 v~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 708 (713)
+.|++ |++|+.+.|.++++.+.++ ++.++.+| .+.++..++|.++||+++ +|+.+.. |. +.++|.++|
T Consensus 4 v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~~l 76 (77)
T 1ilo_A 4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHHHC
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHHHh
Confidence 45566 9999999999999998885 68888888 788999999999999988 9998877 66 688888875
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=108.45 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=80.0
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeE
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
..+..+|...+.....+++.|++ |++|+.+.|.++++++.+. .+.|+.||+++.+.++..++|.++||+++|++|+.
T Consensus 120 ~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 199 (780)
T 3apo_A 120 TLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMA 199 (780)
T ss_dssp ECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSC
T ss_pred eechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcE
Confidence 34567899988788889999999 9999999999999999884 59999999999999999999999999999999999
Q ss_pred eeeecCC-CHHHHHHHHHhh
Q 005125 693 VKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 693 ~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.++.|. +.+.|.+||.+.
T Consensus 200 ~~~~~G~~~~~~l~~~l~~~ 219 (780)
T 3apo_A 200 AVKYNGDRSKESLVAFAMQH 219 (780)
T ss_dssp CEECCSCSCHHHHHHHHHTT
T ss_pred eeEecCCCCHHHHHHHHHHh
Confidence 9999999 999999999875
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-07 Score=78.22 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=58.4
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC----CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE----DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCEL 703 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 703 (713)
..++.|++ |++|+.+.|.|+++++.++ ++.|+.+ +.+.++..++|.++||+++ +|+. +.|. +.+.
T Consensus 14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~~~~~ 85 (106)
T 3kp8_A 14 IGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEA 85 (106)
T ss_dssp HTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCCCHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCCCHHH
Confidence 35777888 9999999999999998775 4444443 6789999999999999776 8874 7788 9999
Q ss_pred HHHHHH
Q 005125 704 LEKSVK 709 (713)
Q Consensus 704 ~~~~~~ 709 (713)
|.+++.
T Consensus 86 l~~~~~ 91 (106)
T 3kp8_A 86 LAVASG 91 (106)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999874
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=84.68 Aligned_cols=85 Identities=7% Similarity=0.087 Sum_probs=68.2
Q ss_pred hcCCceEEEeec--CchhHHHHHHH---HHHHHhCC-CcEEEEEeCCCcHhh--------------------------HH
Q 005125 627 TSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRFP-SVNFLKVEVEDHPYI--------------------------AK 674 (713)
Q Consensus 627 ~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p-~~~~~~v~~d~~~~~--------------------------~~ 674 (713)
.....+++.|++ |++|+.+.+.+ +.+.+.+. ++.++.||+++.+.+ +.
T Consensus 45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (172)
T 3f9u_A 45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRV 124 (172)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHH
Confidence 445677788999 99999974433 44444332 589999999987755 78
Q ss_pred HcCCCcccEEEEE-ECCeEeeeecCC-C-HHHHHHHHHhh
Q 005125 675 SEGVSSIPAFKIY-KNGSRVKEIPGH-Q-CELLEKSVKLY 711 (713)
Q Consensus 675 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~-~~~~~~~~~~~ 711 (713)
.++|.++||+++| ++|+.+.++.|. + .+.+.++|++.
T Consensus 125 ~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 125 KFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp HHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred HcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 8999999999999 789999999999 6 99998888764
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=75.96 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC--CcHhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE--DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELL 704 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 704 (713)
....+++|++ |++|+.+.++|+++.. ++.|..+|++ +.++++..+| .++|++ |.+|+.+ .+.|.++++|
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~~l 87 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTSKL 87 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHHHH
Confidence 3456777887 9999999999987653 3899999998 7899999999 999975 5788876 5677799999
Q ss_pred HHHHHhhh
Q 005125 705 EKSVKLYS 712 (713)
Q Consensus 705 ~~~~~~~~ 712 (713)
+++|+++.
T Consensus 88 ~~~l~~~~ 95 (100)
T 1wjk_A 88 EKQLRKLS 95 (100)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHHH
Confidence 99998763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.8e-07 Score=77.00 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhccC-C-CCHHHHHHHHHH
Q 005125 462 RFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS---KYKEACYAYSEGLEHE-A-YNSVLLCNRAAC 536 (713)
Q Consensus 462 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~ 536 (713)
....+.+.|.+.+..++.+.++.+ ++|+++.+.+ ++++++..++..++.+ | ++.+++++||..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F------------~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHH------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 356777888888888888888887 7999999988 7889999999999998 7 568999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 537 RSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 537 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.++|+|++|..+++++++++|++..+..
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999888765543
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.5e-07 Score=77.43 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~~Pt 683 (713)
....++.|++ |++|+...+.+.++.+.++++.++.|+.+. ...++..++|.++|+
T Consensus 25 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 104 (136)
T 1zzo_A 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPA 104 (136)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSE
T ss_pred CCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCce
Confidence 3567777888 999999999999999999889999999854 467888999999999
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
++++ .+|+.+ .+.|. +.+.|.++|++..
T Consensus 105 ~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 105 YAFVDPHGNVD-VVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred EEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence 9999 489888 89998 9999999998763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=71.77 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005125 496 ARLRGNLLFKASKYKEACYAYSEGLEHE-------AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAA 568 (713)
Q Consensus 496 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A 568 (713)
++.+|..++..|+|..|+.+|++|++.. +..+.++.++|.++.++|++++|+.+++++++++|++..+....+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3479999999999999999999999863 345789999999999999999999999999999999988755433
Q ss_pred HHHHHHHHH
Q 005125 569 IQDYEMLIR 577 (713)
Q Consensus 569 ~~~~~~al~ 577 (713)
.|++.+.
T Consensus 88 --~~~~~~~ 94 (104)
T 2v5f_A 88 --YFEYIMA 94 (104)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5665544
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-07 Score=97.36 Aligned_cols=99 Identities=10% Similarity=0.166 Sum_probs=79.3
Q ss_pred cceeecchhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCC--CcHhhHHHcCCCccc
Q 005125 612 NLVFVSSNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVE--DHPYIAKSEGVSSIP 682 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d--~~~~~~~~~~v~~~P 682 (713)
.+..+ +.+.|...+.. ...+++.|++ |++|+.+.|.++++++.++ .+.|+.||++ +.+.++..++|.++|
T Consensus 13 ~V~~L-t~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~P 91 (519)
T 3t58_A 13 PLTLL-DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFP 91 (519)
T ss_dssp SSEEE-CTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBS
T ss_pred CcEEC-ChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccC
Confidence 34444 34577776644 4667778999 9999999999999998874 4999999995 489999999999999
Q ss_pred EEEEEEC----CeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIYKN----GSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~----g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+++|.. |+.+....|. +.+.|.++|.++
T Consensus 92 Tl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~ 125 (519)
T 3t58_A 92 TVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDA 125 (519)
T ss_dssp EEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEEEcCcccCCCceeEecCCCCHHHHHHHHHHH
Confidence 9999995 4444555555 999999999875
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-07 Score=87.31 Aligned_cols=92 Identities=9% Similarity=0.015 Sum_probs=73.6
Q ss_pred hHHHHHh--hcCCceEEEee-----c--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 620 ERFRHFV--TSPGMAVVLFC-----S--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 620 ~~~~~~l--~~~~~~vv~f~-----~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+.+...+ ....++++.|+ + |++|+.+.|.++++++.+ +.+.++.||+++.+.++..++|.++||+.+|
T Consensus 9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~ 88 (229)
T 2ywm_A 9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE 88 (229)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence 4455555 23344444433 4 999999999999986553 5699999999999999999999999999999
Q ss_pred ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 688 KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|..+.++.|. +.+.+..++...
T Consensus 89 ~~~~~~~~~~G~~~~~~l~~~~~~~ 113 (229)
T 2ywm_A 89 GDKDYGIRYIGLPAGLEFTTLINGI 113 (229)
T ss_dssp SSSCCCEEEESCCCTTHHHHHHHHH
T ss_pred CCCcccceecCCccHHHHHHHHHHH
Confidence 988888889998 888888888654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.5e-07 Score=94.19 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAI-----NSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPC 325 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 325 (713)
.......+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ +|+
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 344455667889999999999999975 3444 567899999999999999999999999976 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
-...+++||.+|..+|++++|+.+|++|++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 466789999999999999999999999988
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.5e-07 Score=95.15 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Q 005125 267 NEAYNKARFEDALALYDRAIAI-----NSSK---ATYRSNKSAALIGLGRQIEALVECKEAIRI--------DPCYHRAH 330 (713)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 330 (713)
......|+|++|+.+|++++++ .|++ +..+.++|.+|..+|+|++|+.++++++++ +|+-+..+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3334568999999999999986 4444 567899999999999999999999999986 44456789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
.+||.+|..+|++++|+.+|++|++
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999998
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.4e-07 Score=79.71 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=72.4
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCC---------------------------CcHhhHHHcC
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVE---------------------------DHPYIAKSEG 677 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d---------------------------~~~~~~~~~~ 677 (713)
....+++.|++ |++|+...|.+.++.+.+++ +.++.|+++ ....++..++
T Consensus 28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (148)
T 2b5x_A 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (148)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence 34567777888 99999999999999988865 899999854 4567899999
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|.++|+++++ ++|+.+....|. +.+.|.++|++.
T Consensus 108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 143 (148)
T 2b5x_A 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (148)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 9999999999 789999999998 889999999876
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-07 Score=79.48 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=70.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
...+++.|++ |++|+.+.|.+.++.++++ ++.++.|+++. ...++..++|.
T Consensus 34 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 113 (145)
T 3erw_A 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHII 113 (145)
T ss_dssp TSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcC
Confidence 3456777888 9999999999999999996 68999998854 56889999999
Q ss_pred cccEEEEE-ECCeEeeeecCC-CHHHHHHHHH
Q 005125 680 SIPAFKIY-KNGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
++|+++++ ++|+.+..+.|. +.+.|.++|+
T Consensus 114 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 114 TIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp EESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred ccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 99999999 789999999999 9999998874
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=74.64 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 005125 274 RFEDALALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRID-P-CYHRAHHRLAMLYFRLGEAEKAVS 348 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 348 (713)
....+.+.|.+.+..++.+.++.+++|.++.+.+ +.++++..++.+++.+ | +..++++.||..|+++|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4566777788888888888889999999998888 6668999999998888 6 568888999999999999999999
Q ss_pred HHHHHhhhhccccH
Q 005125 349 HYKKSSSLANQKDI 362 (713)
Q Consensus 349 ~~~~al~~~~p~~~ 362 (713)
+++++++ ++|++.
T Consensus 93 y~~~lL~-ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQ-TEPQNN 105 (152)
T ss_dssp HHHHHHH-HCTTCH
T ss_pred HHHHHHh-cCCCCH
Confidence 9999999 888875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=92.24 Aligned_cols=89 Identities=4% Similarity=-0.052 Sum_probs=77.0
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CCC
Q 005125 459 AAGRFEDAVKTAQDAAQI-----DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH--------EAY 525 (713)
Q Consensus 459 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 525 (713)
..|+|++|+..|++++++ .|+++.... ++.++|.+|..+|+|++|+.+|++++++ +|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~---------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLH---------MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHH---------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 468999999999999984 677876554 3458999999999999999999999975 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
.+..+.+||.+|..+|++++|+.+|++|+++
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999876
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-07 Score=82.39 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=62.8
Q ss_pred hhHHHHHhhcCCceEEEeec--CchhHHHHH-HH--HHHHHhC-CCcEEEEEeCCCcHhhHHHc--------CCCcccEE
Q 005125 619 NERFRHFVTSPGMAVVLFCS--KAEHKQVLQ-LM--EQVCKRF-PSVNFLKVEVEDHPYIAKSE--------GVSSIPAF 684 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~-~~--~~l~~~~-p~~~~~~v~~d~~~~~~~~~--------~v~~~Pt~ 684 (713)
.+.|........++++.|++ |++|+.+.+ .| +++++.+ .++++++||.++.++++..+ ||.++||+
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~ 108 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN 108 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence 45666666778888999999 999999998 33 3455443 35899999999999999888 99999999
Q ss_pred EEEE-CCeEeee
Q 005125 685 KIYK-NGSRVKE 695 (713)
Q Consensus 685 ~~~~-~g~~~~~ 695 (713)
+||. +|+.+..
T Consensus 109 v~l~~dG~~v~~ 120 (173)
T 3ira_A 109 IIMTPGKKPFFA 120 (173)
T ss_dssp EEECTTSCEEEE
T ss_pred eeECCCCCceee
Confidence 9997 8988765
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-07 Score=79.48 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=73.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC---------------------------CCcHhhHHHcCCCc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV---------------------------EDHPYIAKSEGVSS 680 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~---------------------------d~~~~~~~~~~v~~ 680 (713)
+.+++.|++ |++|+...|.+.++.+++ ++.++.|++ +....++..++|.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 567777888 999999999999999998 899999998 46678889999999
Q ss_pred ccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 681 IPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 681 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+++++ ++|+.+..+.|. +.++|.++|+++.
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence 9997777 789999999999 9999999999874
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-07 Score=93.99 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=67.3
Q ss_pred chhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCC---------CcEEEEEeCCCcHhhHHHcCCCcccEE
Q 005125 618 SNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFP---------SVNFLKVEVEDHPYIAKSEGVSSIPAF 684 (713)
Q Consensus 618 ~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---------~~~~~~v~~d~~~~~~~~~~v~~~Pt~ 684 (713)
+...|...+... ..+++.|++ |++|+.+.|.++++++.++ .+.|+.||++..+.++..++|.++||+
T Consensus 29 t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTl 108 (470)
T 3qcp_A 29 SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRL 108 (470)
T ss_dssp SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeE
Confidence 345777766543 568888999 9999999999999999885 399999999999999999999999999
Q ss_pred EEEECCe--EeeeecCC
Q 005125 685 KIYKNGS--RVKEIPGH 699 (713)
Q Consensus 685 ~~~~~g~--~~~~~~g~ 699 (713)
++|..|. .+.++.|.
T Consensus 109 ilf~~gg~~~~~~y~G~ 125 (470)
T 3qcp_A 109 FFFYPRDSCRSNEECGT 125 (470)
T ss_dssp EEEEESSCCCTTSCCCC
T ss_pred EEEECCCceEEEEeeCC
Confidence 9997543 34455553
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=97.08 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=81.1
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
....|...+.. ...+++.|++ |++|+.+.|.++++++.++ ++.++.+|.+.. +++..++|.++||+++|..|.
T Consensus 358 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~ 436 (481)
T 3f8u_A 358 VAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANK 436 (481)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTC
T ss_pred cccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCC
Confidence 44577777765 5667778999 9999999999999999884 599999999988 788899999999999999887
Q ss_pred E--eeeecCC-CHHHHHHHHHhhh
Q 005125 692 R--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
. +.++.|. +.+.|.++|++..
T Consensus 437 ~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 437 KLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp TTSCEECCSCCSHHHHHHHHHHHC
T ss_pred eEeeeEeCCCCCHHHHHHHHHHhc
Confidence 6 6788888 9999999998764
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=77.44 Aligned_cols=83 Identities=7% Similarity=0.157 Sum_probs=72.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH-----------------------hhHHHcCCCccc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP-----------------------YIAKSEGVSSIP 682 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~-----------------------~~~~~~~v~~~P 682 (713)
...++.|++ |++|+...+.+.++.+.++ ++.++.|+.+..+ .++..++|.++|
T Consensus 31 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 110 (152)
T 2lja_A 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIP 110 (152)
T ss_dssp SEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSC
T ss_pred CEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCC
Confidence 456667888 9999999999999999885 4899999988765 688899999999
Q ss_pred EEEEEE-CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 683 AFKIYK-NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++++. +|+.+....|. +.++|.++|++..
T Consensus 111 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 142 (152)
T 2lja_A 111 RFILLDRDGKIISANMTRPSDPKTAEKFNELL 142 (152)
T ss_dssp CEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred EEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence 999997 89999999998 8899999998763
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=76.60 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=70.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC------------------------cHhhHHHcC--C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED------------------------HPYIAKSEG--V 678 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~------------------------~~~~~~~~~--v 678 (713)
...+++.|++ |++|+...|.+.++.+++ .++.++.|++|. ...++..++ |
T Consensus 24 gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 103 (151)
T 3raz_A 24 APVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTV 103 (151)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCS
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCcc
Confidence 3456667888 999999999999999887 468999999873 344667788 9
Q ss_pred CcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
..+|+++++ ++|+.+..+.|. +.++|.++|++..
T Consensus 104 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 104 GVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp CCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 999988877 689999999999 9999999998763
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=77.49 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc----------------------HhhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH----------------------PYIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~----------------------~~~~~~~~v~~~P 682 (713)
...+++.|++ |++|+...|.+.++.+.++ ++.++.|+++.. ..++..++|.++|
T Consensus 26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 105 (151)
T 2f9s_A 26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP 105 (151)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence 3456777888 9999999999999998874 489999988763 4788899999999
Q ss_pred EEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 106 ~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l 136 (151)
T 2f9s_A 106 TTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136 (151)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 98888 789999999999 999999999875
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=77.50 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=71.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHhhHHHc---------------------------C
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPYIAKSE---------------------------G 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~~~~~~---------------------------~ 677 (713)
...+++.|++ |++|....|.+.++.+.+++ +.++.|+++..+.....+ +
T Consensus 34 gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (165)
T 3or5_A 34 GKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGG 113 (165)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTTC
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhccC
Confidence 3566777888 99999999999999988854 899999999877666665 8
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 114 i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 149 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA 149 (165)
T ss_dssp SCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 9999998888 689999999998 899999999875
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=93.99 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=70.3
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
....+++|++ |++|+.+.|.+++++..+|.+.+..+|+++.++++..++|+++|++++ +|+.+.. |. +.++|.
T Consensus 117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~ 192 (521)
T 1hyu_A 117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIV 192 (521)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHH
T ss_pred CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHHH
Confidence 3446777888 999999999999999999999999999999999999999999999866 9998866 77 889999
Q ss_pred HHHHhh
Q 005125 706 KSVKLY 711 (713)
Q Consensus 706 ~~~~~~ 711 (713)
++|+..
T Consensus 193 ~~l~~~ 198 (521)
T 1hyu_A 193 AKVDTG 198 (521)
T ss_dssp HHHCCS
T ss_pred HHHhhc
Confidence 998653
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.34 E-value=9.4e-07 Score=91.40 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=77.8
Q ss_pred chhHHHHHhh-cCCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC-
Q 005125 618 SNERFRHFVT-SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG- 690 (713)
Q Consensus 618 ~~~~~~~~l~-~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g- 690 (713)
+...|...+. ....+++.|++ ||+|+.+.|.++++++.+. .+.++.+|.+..+ +..++|.++||+.+|..|
T Consensus 255 ~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~ 332 (361)
T 3uem_A 255 VGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASA 332 (361)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSS
T ss_pred ecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCC
Confidence 3456777663 56677888999 9999999999999999884 3899999998876 578999999999999655
Q ss_pred -eEeeeecCC-CHHHHHHHHHhhh
Q 005125 691 -SRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 -~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+.+.++.|. +.+.|.+||++.+
T Consensus 333 ~~~~~~~~G~~~~~~l~~~l~~~~ 356 (361)
T 3uem_A 333 DRTVIDYNGERTLDGFKKFLESGG 356 (361)
T ss_dssp SCCCEECCSCSSHHHHHHHHTTTS
T ss_pred CcceeEecCCCCHHHHHHHHHhcC
Confidence 567888898 9999999998764
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.6e-07 Score=96.60 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=78.4
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+...|...+.. ...+++.|++ ||+|+.+.|.++++++.++ .+.++.+|++..+.. . ++|.++||+++|.+|
T Consensus 364 ~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G 441 (504)
T 2b5e_A 364 VGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGG 441 (504)
T ss_dssp CTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCT
T ss_pred ccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCC
Confidence 34567776644 5678888999 9999999999999998764 799999999887655 4 999999999999999
Q ss_pred eE--eeeecCC-CHHHHHHHHHhhh
Q 005125 691 SR--VKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~~--~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+. +.++.|. +.+.|.++|++..
T Consensus 442 ~~~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 442 KKSESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp TSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred ceecceEecCCCCHHHHHHHHHhcC
Confidence 76 7788898 9999999998763
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=75.22 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcH----------------------hhHHHcCCCccc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHP----------------------YIAKSEGVSSIP 682 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~----------------------~~~~~~~v~~~P 682 (713)
...+++.|++ |+.|....+.+.++.+++++ +.++.|+++..+ .++..++|.++|
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 107 (152)
T 3gl3_A 28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMP 107 (152)
T ss_dssp TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSS
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCC
Confidence 3456666888 99999999999999988854 899999988665 677889999999
Q ss_pred EEEEE-ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 683 AFKIY-KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
+++++ ++|+.+....|. +.+.|.++|++..
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 108 TSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141 (152)
T ss_dssp EEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred eEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence 98877 789999999996 5589999998763
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=68.25 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=59.2
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcC--CCcccEEEEEECCeEeeeecCCCHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEG--VSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
.+++|+. |++|+.+.++|+++...++++.+..+|++..+ +++..++ +.++|++ |.+|+.+. |. +.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~ 74 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TD 74 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HH
Confidence 4667776 99999999999999988778999999987654 7888898 9999997 56888765 33 67
Q ss_pred HHHHHHh
Q 005125 704 LEKSVKL 710 (713)
Q Consensus 704 ~~~~~~~ 710 (713)
|.+++++
T Consensus 75 l~~~~~~ 81 (85)
T 1ego_A 75 FAAWVKE 81 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.6e-06 Score=87.66 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQI-----DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH------ 522 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 522 (713)
..-+..+|++++|+..+++++++ .|+++.... .+.++|.+|..+|+|++|+.++++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~---------~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLK---------VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 34456789999999999999975 567766543 4458999999999999999999999975
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 523 --EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556 (713)
Q Consensus 523 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 556 (713)
+|+.+..+++||.+|..+|++++|+.+|++|+++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3344667999999999999999999999999875
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-06 Score=77.65 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeC----------------------------CCcHhhHHHc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEV----------------------------EDHPYIAKSE 676 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~----------------------------d~~~~~~~~~ 676 (713)
...+++.|++ |++|+...|.+.++.+++ .++.++.|.. |....++..+
T Consensus 38 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (164)
T 2h30_A 38 DKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNL 117 (164)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHHc
Confidence 4567777888 999999999999999875 4566655543 3345788899
Q ss_pred CCCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 GVSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|.++|+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 118 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~ 154 (164)
T 2h30_A 118 NISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP 154 (164)
T ss_dssp TCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred CCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999988 789999999998 999999999875
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-06 Score=98.37 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=80.3
Q ss_pred hhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
...|...+ .....+++.|++ |++|+.+.|.++++++.+ +.+.|+.||+++.+.++..++|.++||+++|++|+.+.
T Consensus 664 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 743 (780)
T 3apo_A 664 PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKK 743 (780)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTT
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCccc
Confidence 45665543 445667788988 999999999999999887 57999999999999999999999999999999998888
Q ss_pred eecC----C-CHHHHHHHHHhh
Q 005125 695 EIPG----H-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g----~-~~~~~~~~~~~~ 711 (713)
++.| . +.+.|.++|++.
T Consensus 744 ~~~G~~~g~~~~~~l~~~l~~~ 765 (780)
T 3apo_A 744 SIWEEQINSRDAKTIAALIYGK 765 (780)
T ss_dssp EEEEEEECCCCHHHHHHHHHHH
T ss_pred cccCcccCCcCHHHHHHHHHHH
Confidence 7777 3 899999999876
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-06 Score=80.83 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred cchhHHHHHhhcC-CceEEEeec----CchhHHHHHHHHHHHHhCCC------cEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 617 SSNERFRHFVTSP-GMAVVLFCS----KAEHKQVLQLMEQVCKRFPS------VNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 617 ~~~~~~~~~l~~~-~~~vv~f~~----cg~c~~~~~~~~~l~~~~p~------~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
....++...+... .++++.|+. |++|+.+.++++++++.++. +.|+.+|+++.+.++..|||+++|||.
T Consensus 12 ~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~ 91 (243)
T 2hls_A 12 DFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVA 91 (243)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEE
Confidence 3445666666543 344444442 99999999999999988766 999999999999999999999999999
Q ss_pred EEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 686 IYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 686 ~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+| +| ..++.|. +.+.+..++..+
T Consensus 92 i~-~g--~~~~~G~~~~~~l~~fv~~~ 115 (243)
T 2hls_A 92 FL-GG--EVRWTGIPAGEEIRALVEVI 115 (243)
T ss_dssp ET-TT--TEEEESCCCTTHHHHHHHHH
T ss_pred EE-CC--ceeEcCCCcHHHHHHHHHHH
Confidence 99 67 6778788 667787777653
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.9e-06 Score=73.43 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=65.7
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.+.+++ +.++.|++|. ...++..++|.
T Consensus 29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (152)
T 2lrn_A 29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV 108 (152)
T ss_dssp TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence 3456777888 99999999999999988754 8999999987 56788899999
Q ss_pred cccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 680 SIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
++|+++++ ++|+.+....+ .++|.++|++.
T Consensus 109 ~~P~~~lid~~G~i~~~~~~--~~~l~~~l~~l 139 (152)
T 2lrn_A 109 GFPHIILVDPEGKIVAKELR--GDDLYNTVEKF 139 (152)
T ss_dssp SSCEEEEECTTSEEEEECCC--TTHHHHHHHHH
T ss_pred cCCeEEEECCCCeEEEeeCC--HHHHHHHHHHH
Confidence 99999888 68999888643 35666666554
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.8e-06 Score=74.15 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=69.3
Q ss_pred CCceEEEeec--CchhHH-HHHHHHHHHHhCCC--cEEEEEeCC----------------------------CcHh----
Q 005125 629 PGMAVVLFCS--KAEHKQ-VLQLMEQVCKRFPS--VNFLKVEVE----------------------------DHPY---- 671 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~-~~~~~~~l~~~~p~--~~~~~v~~d----------------------------~~~~---- 671 (713)
...+++.|++ |++|+. +.|.+.++.+++++ +.++.|+++ ....
T Consensus 30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (160)
T 3lor_A 30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRI 109 (160)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSS
T ss_pred CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchh
Confidence 3566777888 999999 69999999999853 889888862 2233
Q ss_pred --hHHHcCCCcccEEEEEE-CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 672 --IAKSEGVSSIPAFKIYK-NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 672 --~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++..++|.++|+++++. +|+.+..+.|. +.+.|.+.|++.
T Consensus 110 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 153 (160)
T 3lor_A 110 PSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSL 153 (160)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHH
T ss_pred hhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHH
Confidence 88999999999998884 89999999999 999999999875
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.8e-06 Score=71.78 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC----------------------------CCcHhhHHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV----------------------------EDHPYIAKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~----------------------------d~~~~~~~~~~ 677 (713)
...+++.|++ |++|....+.+.++.+.++ ++.++.++. +....++..++
T Consensus 22 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (138)
T 4evm_A 22 GKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYG 101 (138)
T ss_dssp TSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTT
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHcC
Confidence 3456667888 9999999999999998885 588888842 33456888999
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|.++|+++++ ++|+.+....|. +.++|.++|++.
T Consensus 102 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 102 VRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp CCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred cccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 9999999999 789999999998 999999999875
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-06 Score=74.68 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=68.7
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHh-------------------------hHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPY-------------------------IAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~-------------------------~~~~~~v~ 679 (713)
...+++.|++ |++|....|.+.++.+.+++ +.++.|+++..+. ++..++|.
T Consensus 31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 110 (148)
T 3hcz_A 31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY 110 (148)
T ss_dssp CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcC
Confidence 3456667888 99999999999999988853 8999999997776 89999999
Q ss_pred cccEEEEE-ECCeEeeeecCC-CHHHHHHHHHh
Q 005125 680 SIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
++|+++++ ++|+.+.+..|. +.+.+.+.|.+
T Consensus 111 ~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 111 ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp SSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 99999999 689999999988 66666666544
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.5e-06 Score=71.87 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC-CC--cEEEEEeCCCc-------------------------HhhHHHcCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PS--VNFLKVEVEDH-------------------------PYIAKSEGV 678 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~--~~~~~v~~d~~-------------------------~~~~~~~~v 678 (713)
...+++.|++ |++|+...|.+.++.+++ ++ +.++.|+++.. ..++..++|
T Consensus 33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 112 (148)
T 3fkf_A 33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAI 112 (148)
T ss_dssp TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTC
T ss_pred CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCC
Confidence 3566777888 999999999999999988 43 89999988873 478899999
Q ss_pred CcccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
.++|+++++ ++|+.+.... +.+.|.+.|++.
T Consensus 113 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 144 (148)
T 3fkf_A 113 LTLPTNILLSPTGKILARDI--QGEALTGKLKEL 144 (148)
T ss_dssp CSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCcCEEEEECCCCeEEEecC--CHHHHHHHHHHH
Confidence 999999998 6898888776 788888888765
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.8e-06 Score=73.12 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCceEEEeec--CchhHHH-HHHHHHHHHhCC--CcEEEEEeCC----------------------------CcH-----
Q 005125 629 PGMAVVLFCS--KAEHKQV-LQLMEQVCKRFP--SVNFLKVEVE----------------------------DHP----- 670 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~-~~~~~~l~~~~p--~~~~~~v~~d----------------------------~~~----- 670 (713)
...+++.|++ |++|+.. .|.+.++.++++ ++.++.|+.+ ...
T Consensus 28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (158)
T 3eyt_A 28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP 107 (158)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence 3456677888 9999995 999999999985 5888888863 111
Q ss_pred hhHHHcCCCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 671 YIAKSEGVSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 671 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.++..++|..+|+++++ ++|+.+..+.|. +.+.|.+.|++.
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 150 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 48889999999988888 689999999999 999999998875
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.5e-06 Score=72.93 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=68.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------cHhhHHHcCCCcccEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------HPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------~~~~~~~~~v~~~Pt~~ 685 (713)
...+++.|++ |+.|+...|.+.++.++++ ++.++.|+.+. ...+...++|.++|+++
T Consensus 41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 120 (158)
T 3hdc_A 41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTF 120 (158)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEE
Confidence 3456777888 9999999999999999986 69999999987 67899999999999966
Q ss_pred EE-ECCeEeeeecCC---CHHHHHHHHHh
Q 005125 686 IY-KNGSRVKEIPGH---QCELLEKSVKL 710 (713)
Q Consensus 686 ~~-~~g~~~~~~~g~---~~~~~~~~~~~ 710 (713)
++ ++|+.+..+.|. +.+++.+.+++
T Consensus 121 lid~~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 121 IVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp EECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred EEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence 66 689999999998 55666666554
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=72.47 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----HhhHHHcCCCcccEEEEEECCeEeeeecCC----C
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH----Q 700 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~----~ 700 (713)
.+++|++ |++|+.+.|.|+++... ..++.|+.+.. +.++..++|.++|++ |.+|+.+..+.|. +
T Consensus 21 ~vv~f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~~~~~~~ 95 (116)
T 2e7p_A 21 PVVVFSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDTVVEKHQ 95 (116)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHHHHHHHH
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHHHHHHHh
Confidence 4555888 99999999999988654 46677776655 568899999999998 6799998877665 5
Q ss_pred HHHHHHHHHhh
Q 005125 701 CELLEKSVKLY 711 (713)
Q Consensus 701 ~~~~~~~~~~~ 711 (713)
.+.|.++|++.
T Consensus 96 ~~~l~~~l~~~ 106 (116)
T 2e7p_A 96 RNELLPLLQDA 106 (116)
T ss_dssp TTCHHHHHHHT
T ss_pred CChHHHHHHHc
Confidence 67888888765
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-06 Score=76.29 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=66.2
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------CCcHhhHHHcCCCccc
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV-----------------------EDHPYIAKSEGVSSIP 682 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~-----------------------d~~~~~~~~~~v~~~P 682 (713)
....+++.|++ |++|+...|.+.++.++ ++.++.|+. |....++..++|..+|
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 127 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 127 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence 44567777888 99999999999999886 577777773 4455788889999999
Q ss_pred -EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 -AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 -t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|++.++|+.+....|. +.+.+.++|++.
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 158 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 158 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 55666789999999998 888888877654
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.7e-06 Score=73.55 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=69.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeC-----------------------CCcHhhHHHcCCCcc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEV-----------------------EDHPYIAKSEGVSSI 681 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~-----------------------d~~~~~~~~~~v~~~ 681 (713)
...+++.|++ |++|+...+.+.++.+.++ ++.++.|+. +....++..++|..+
T Consensus 28 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 107 (153)
T 2l5o_A 28 GKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVY 107 (153)
T ss_dssp TCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSS
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCcc
Confidence 4566777887 9999999999999998885 377776653 345678899999999
Q ss_pred cEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 682 PAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+++++ .+|+.+..+.|. +.+.|.++|++.
T Consensus 108 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 139 (153)
T 2l5o_A 108 PTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139 (153)
T ss_dssp SEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 999988 689999999998 999999999875
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.8e-06 Score=74.32 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=67.3
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~~Pt 683 (713)
....++.|++ |++|+.+.|.+.++.+. +++.++.|+.++ ...++..++|.++|+
T Consensus 42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 120 (156)
T 1kng_A 42 GKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE 120 (156)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred CCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence 4567777888 99999999999999877 668888888643 346788899999996
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++++ .+|+.+..+.|. +.+.|.++|++.
T Consensus 121 ~~~id~~G~i~~~~~g~~~~~~l~~~l~~~ 150 (156)
T 1kng_A 121 TFVVGREGTIVYKLVGPITPDNLRSVLLPQ 150 (156)
T ss_dssp EEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred EEEEcCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 5545 789999999998 889888888765
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=72.07 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC------------------CcH------------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE------------------DHP------------------ 670 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d------------------~~~------------------ 670 (713)
...+++.|++ |++|+...|.+.++.++++++.|+.|+++ +.+
T Consensus 37 gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (165)
T 3ha9_A 37 GDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV 116 (165)
T ss_dssp SSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEE
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEE
Confidence 3456677888 99999999999999999989999999988 343
Q ss_pred ----hhHHHcCCCcccEEEEE-ECCeEeeeecCC--CHHHHHHHHHhhh
Q 005125 671 ----YIAKSEGVSSIPAFKIY-KNGSRVKEIPGH--QCELLEKSVKLYS 712 (713)
Q Consensus 671 ----~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~~~~~ 712 (713)
.+...++|.++|+++++ ++|+.+. .|. +.+.|.+.|++..
T Consensus 117 ~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 117 MDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp ECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred eChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 78888999999999998 5788877 454 6899999998753
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-06 Score=65.96 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCC-CcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVE-DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELL 704 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~ 704 (713)
.+++|++ |++|+.+.+.++++.+.++ .+.++.+|.+ +.+.++..+|+.++|++++ +|+.+. .|. +.++|
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l 77 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDL 77 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHH
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHh
Confidence 4666777 9999999999999887763 3555666654 5788889999999999876 888653 333 55555
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=71.66 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCc-----------------------HhhHHHcCCCcc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDH-----------------------PYIAKSEGVSSI 681 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~-----------------------~~~~~~~~v~~~ 681 (713)
...+++.|++ |+.|....+.+.++.+.+++ +.++.|+++.. ..++..++|..+
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (154)
T 3kcm_A 28 GQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGV 107 (154)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSB
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCC
Confidence 3566777888 99999999999999999854 88999998875 237888999999
Q ss_pred cEEEEE-ECCeEeeeecCC---CHHHHHHHHHhh
Q 005125 682 PAFKIY-KNGSRVKEIPGH---QCELLEKSVKLY 711 (713)
Q Consensus 682 Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~ 711 (713)
|+++++ ++|+.+..+.|. +.+.|.++|++.
T Consensus 108 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 141 (154)
T 3kcm_A 108 PETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141 (154)
T ss_dssp CEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred CeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence 955555 789999999988 567999998865
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-06 Score=83.60 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=56.4
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC----CCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV----EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~----d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
++.|++ ||+|+++.|.+++++++++ ++++|. ++.++++++++|+++||+.+ +|+. +.|. +.++|.
T Consensus 201 vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L~ 272 (291)
T 3kp9_A 201 GTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEALA 272 (291)
T ss_dssp CEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHHH
Confidence 577888 9999999999999987764 455552 34789999999999999544 8874 8888 999999
Q ss_pred HHHH
Q 005125 706 KSVK 709 (713)
Q Consensus 706 ~~~~ 709 (713)
+++.
T Consensus 273 ~~l~ 276 (291)
T 3kp9_A 273 VASG 276 (291)
T ss_dssp HHTC
T ss_pred HHHC
Confidence 9875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00036 Score=74.98 Aligned_cols=162 Identities=11% Similarity=-0.044 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHh--CCCCHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINS-SKATYRSNKSAALIGLG---------RQIEALVECKEAIRI--DPCYHRA 329 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~--~p~~~~~ 329 (713)
+..+-..+.+.|++++|+.+|+++.+..- -+...|..+-.++...+ ..++|...|++.... .| +...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHH
Confidence 45556777899999999999999987532 24556666666665443 378899999988775 34 5778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 005125 330 HHRLAMLYFRLGEAEKAVSHYKKSSSL-ANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYAL 408 (713)
Q Consensus 330 ~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 408 (713)
|..+...|.+.|++++|++.|+++... +.|+. ..+..+...+...|++++|...++.....+-......|..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-------RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999988762 34553 4566667778889999999999999988765544588999
Q ss_pred HHHHHHHccCHHHHHHHhhcccc
Q 005125 409 QAEALLRLQRHQEAHDSYNKSPK 431 (713)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~ 431 (713)
+-.+|.+.|+.++|.++|++.-.
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999999999999999998743
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00026 Score=76.10 Aligned_cols=162 Identities=8% Similarity=-0.064 Sum_probs=127.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcc---------CHHHHHHHhhccccCChhhHHhhhccc
Q 005125 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQ---------RHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 374 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
....+.+.|++++|+..|++....+-......|..+-.++...+ ..++|.+.|++..... ..
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G---------~~ 102 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK---------VV 102 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT---------CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC---------CC
Confidence 34556678999999999999988754433467777666665443 4788999998875432 11
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP-NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH- 522 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 522 (713)
.+...|..+-..|.+.|++++|..+|++..+..- -+...+. .+-..|.+.|++++|.+.|++..+.
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn------------~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG------------PALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh------------HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3566888999999999999999999999887532 2344454 5778889999999999999998865
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 523 -EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVM 557 (713)
Q Consensus 523 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 557 (713)
.| +...|..+-.+|.+.|+.++|.+.+++..+..
T Consensus 171 ~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 171 VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 34 67889999999999999999999999987753
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.1e-05 Score=68.48 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=67.0
Q ss_pred CceEEEeec--Cch--hHHHHHHHHHHHHhC---CCcEEEEEeCCCcH-------------------------hhHHHcC
Q 005125 630 GMAVVLFCS--KAE--HKQVLQLMEQVCKRF---PSVNFLKVEVEDHP-------------------------YIAKSEG 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~--c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~-------------------------~~~~~~~ 677 (713)
..+++.|++ |++ |....|.+.++.+++ .++.++.|++|..+ .++..++
T Consensus 34 k~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 113 (150)
T 3fw2_A 34 KSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYS 113 (150)
T ss_dssp SEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcC
Confidence 456777888 999 999999999999887 45899999998765 6888999
Q ss_pred CCcccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+.... +.+.|.+.|++.
T Consensus 114 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 146 (150)
T 3fw2_A 114 IYKIPANILLSSDGKILAKNL--RGEELKKKIENI 146 (150)
T ss_dssp CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCccCeEEEECCCCEEEEccC--CHHHHHHHHHHH
Confidence 9999999999 6899888775 677787777654
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-05 Score=73.00 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=66.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--Cc------EEEEEeCCC-cHhhHHHc----------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SV------NFLKVEVED-HPYIAKSE---------------------- 676 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~------~~~~v~~d~-~~~~~~~~---------------------- 676 (713)
..+++.|++ |++|....|.|.++.++++ ++ .|+.|+++. .+.....+
T Consensus 60 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 139 (183)
T 3lwa_A 60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASL 139 (183)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGGT
T ss_pred CEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHHh
Confidence 456677888 9999999999999998873 26 999999998 56555554
Q ss_pred ---CCCcccEE-EEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 ---GVSSIPAF-KIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 ---~v~~~Pt~-~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+|..+|++ ++.++|+.+..+.|. +.+.|.++|++.
T Consensus 140 ~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 179 (183)
T 3lwa_A 140 GGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPL 179 (183)
T ss_dssp TTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 68899954 445789999999998 999999999875
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=68.32 Aligned_cols=79 Identities=8% Similarity=0.136 Sum_probs=65.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcHh-----------------------hHHHcCCCccc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHPY-----------------------IAKSEGVSSIP 682 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~~-----------------------~~~~~~v~~~P 682 (713)
..+++.|++ |++|....|.+.++.++++ ++.++.|++|..+. ++..++|..+|
T Consensus 36 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P 115 (152)
T 2lrt_A 36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLP 115 (152)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCS
T ss_pred CEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCc
Confidence 456777888 9999999999999998874 48999999987664 78889999999
Q ss_pred EEEEE-ECCeEeeeecCC-CHHHHHHHH
Q 005125 683 AFKIY-KNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 683 t~~~~-~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
+++++ ++|+.+....|. +.+.....+
T Consensus 116 ~~~lid~~G~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 116 SVFLVNRNNELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp EEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred eEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence 99988 589999999998 665554433
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-05 Score=67.77 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=64.0
Q ss_pred CceEEEeec--CchhHHHHHHHHH---HHHhC--CCcEEEEEeCCCcHh------------------------hHHHcCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQ---VCKRF--PSVNFLKVEVEDHPY------------------------IAKSEGV 678 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~---l~~~~--p~~~~~~v~~d~~~~------------------------~~~~~~v 678 (713)
..+++.||+ |++|+...|.+.+ +.+.+ .++.++.|+.|..+. ++..++|
T Consensus 32 k~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 111 (142)
T 3eur_A 32 EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDL 111 (142)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCC
T ss_pred CEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCC
Confidence 556777888 9999999999999 88776 569999999987643 3677899
Q ss_pred CcccEEEEE-ECCeEeeeecCCCHHHHHHHHHh
Q 005125 679 SSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
.++|+++++ ++|+.+.+..| .++|+++|++
T Consensus 112 ~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e 142 (142)
T 3eur_A 112 RAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE 142 (142)
T ss_dssp TTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred CcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence 999998888 46888877654 6889988864
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.8e-05 Score=78.43 Aligned_cols=92 Identities=12% Similarity=0.227 Sum_probs=74.1
Q ss_pred hHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCC--CcHhhHHHcCCCc--ccEEEEEECCe
Q 005125 620 ERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVE--DHPYIAKSEGVSS--IPAFKIYKNGS 691 (713)
Q Consensus 620 ~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d--~~~~~~~~~~v~~--~Pt~~~~~~g~ 691 (713)
+.+...+... ...+++|++ |++|..+.+.++++++.+ +.+.|+.||++ +.+.++..+||.. +|++.+|..|.
T Consensus 125 ~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 125 QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp TTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred ccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC
Confidence 3455554443 344666876 999999999999999998 46999999999 7899999999998 99999999876
Q ss_pred Eeeeec---CC-CHHHHHHHHHhh
Q 005125 692 RVKEIP---GH-QCELLEKSVKLY 711 (713)
Q Consensus 692 ~~~~~~---g~-~~~~~~~~~~~~ 711 (713)
....+. |. +.+.|.+|++.+
T Consensus 205 ~~~ky~~~~~~~~~~~l~~fi~~~ 228 (361)
T 3uem_A 205 EMTKYKPESEELTAERITEFCHRF 228 (361)
T ss_dssp -CCEECCSSCCCCHHHHHHHHHHH
T ss_pred cccccCCCccccCHHHHHHHHHHH
Confidence 655554 55 999999999876
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.9e-05 Score=67.91 Aligned_cols=82 Identities=7% Similarity=0.135 Sum_probs=63.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHH---HHHhC--CCcEEEEEeCCCcHhh------------------------HHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQ---VCKRF--PSVNFLKVEVEDHPYI------------------------AKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~---l~~~~--p~~~~~~v~~d~~~~~------------------------~~~~~ 677 (713)
...+++.|++ |++|+...|.+.+ +.+.+ .++.++.|++|..+.. +..++
T Consensus 27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (142)
T 3ewl_A 27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD 106 (142)
T ss_dssp CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC
Confidence 3456667888 9999999998887 77666 3589999999866543 34789
Q ss_pred CCcccEEEEE-ECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
|..+|+++++ ++|+.+.. +.+.++|+++|++..
T Consensus 107 v~~~P~~~lid~~G~i~~~--~~~~~~l~~~l~~~~ 140 (142)
T 3ewl_A 107 IRATPTIYLLDGRKRVILK--DTSMEQLIDYLATQA 140 (142)
T ss_dssp CCSSSEEEEECTTCBEEEC--SCCHHHHHHHHHC--
T ss_pred CCCCCeEEEECCCCCEEec--CCCHHHHHHHHHHHc
Confidence 9999999988 57887762 348999999998753
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=1.5e-05 Score=62.00 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=54.5
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
.+++|+. |++|+.+.+++++. ++.+..+|+++.+.+.. .+++.++|++ |.+|+. +.|.++++|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~~ 71 (81)
T 1h75_A 2 RITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMINR 71 (81)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHGG
T ss_pred EEEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHHH
Confidence 3566776 99999999998863 46778899988776654 4799999997 458864 56778999998
Q ss_pred HHHhh
Q 005125 707 SVKLY 711 (713)
Q Consensus 707 ~~~~~ 711 (713)
+|+++
T Consensus 72 ~l~~~ 76 (81)
T 1h75_A 72 LHPAP 76 (81)
T ss_dssp GSCCC
T ss_pred HHhcc
Confidence 88764
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=3.9e-05 Score=58.46 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=53.3
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKS 707 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 707 (713)
+++|+. |++|+.+.++++++ ++.+..+|++..+.+.. .+++.++|++. .+|+. +.|.++++|.++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~--~~g~~---~~g~~~~~l~~~ 72 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEH---WSGFRPERIKQL 72 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEE--ECCeE---EcCCCHHHHHHH
Confidence 556766 99999999998865 36777889988776665 78999999986 37764 668899999988
Q ss_pred HH
Q 005125 708 VK 709 (713)
Q Consensus 708 ~~ 709 (713)
|+
T Consensus 73 l~ 74 (75)
T 1r7h_A 73 QA 74 (75)
T ss_dssp HC
T ss_pred Hh
Confidence 74
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-05 Score=69.82 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----------------------CcHhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-----------------------DHPYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-----------------------~~~~~~~~~~v~~~Pt 683 (713)
...+++.|++ |++|....|.+.++.++ ++.++.|+++ ....++..++|..+|+
T Consensus 58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 135 (176)
T 3kh7_A 58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPE 135 (176)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCe
Confidence 3566777888 99999999999999887 6888888753 3346778899999996
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++++ ++|+.+..+.|. +.+.+.+.|++.
T Consensus 136 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 165 (176)
T 3kh7_A 136 TYLIDKQGIIRHKIVGVVDQKVWREQLAPL 165 (176)
T ss_dssp EEEECTTCBEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEECCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 6655 689999999998 888888877654
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-05 Score=72.04 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=67.0
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-----------------------------CcHhhHHHcCC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-----------------------------DHPYIAKSEGV 678 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-----------------------------~~~~~~~~~~v 678 (713)
+++.|++ |++|+...|.+.++.++++ ++.++.|+++ ....++..++|
T Consensus 49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 128 (196)
T 2ywi_A 49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDA 128 (196)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCC
Confidence 7777888 9999999999999998874 4899999884 34578889999
Q ss_pred CcccEEEEE-ECCeEeee---------ecCC-CHHHHHHHHHhh
Q 005125 679 SSIPAFKIY-KNGSRVKE---------IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~---------~~g~-~~~~~~~~~~~~ 711 (713)
..+|+++++ ++|+.+.. +.|. +.++|.+.|++.
T Consensus 129 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l 172 (196)
T 2ywi_A 129 ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL 172 (196)
T ss_dssp CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence 999999888 57988877 5677 889999988765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=60.20 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH---HHHHHHHHhccC-C-CCHHHHHHHHH
Q 005125 461 GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE---ACYAYSEGLEHE-A-YNSVLLCNRAA 535 (713)
Q Consensus 461 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~ 535 (713)
.....+...|.+.+..++....+.+ ++|+++....+..+ ++..++..+..+ | ..-+.++.||.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F------------~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3456677788888887887777776 78999988876666 999999999887 5 56789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 536 CRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 536 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+.++|+|++|..+++..|+.+|++..+..
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999977665
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.1e-05 Score=70.65 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=65.6
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCC-----------------------------CcHhhHHHcC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVE-----------------------------DHPYIAKSEG 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d-----------------------------~~~~~~~~~~ 677 (713)
..+++.|++ |++|+...|.+.++.+++++ +.++.|+.+ ....++..++
T Consensus 34 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 113 (188)
T 2cvb_A 34 PLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYR 113 (188)
T ss_dssp SEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTT
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcC
Confidence 456777888 99999999999999999865 889999873 3456888999
Q ss_pred CCcccEEEEE-ECCeEeee--------ecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKE--------IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~--------~~g~-~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+.. ..|. +.++|.+.|++.
T Consensus 114 v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 114 ALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp CCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence 9999999888 57888776 2233 578888888765
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-05 Score=77.34 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC---------------------------cHhhHHHcC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED---------------------------HPYIAKSEG 677 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~---------------------------~~~~~~~~~ 677 (713)
...+++.|++ |++|+...|.|.++.++++ ++.++.|+++. ...++..++
T Consensus 82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg 161 (352)
T 2hyx_A 82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR 161 (352)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence 3456777888 9999999999999998885 48999998653 246888899
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|..+|+++++ ++|+.+..+.|. +.++|.++|++.
T Consensus 162 V~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~l 197 (352)
T 2hyx_A 162 NRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQL 197 (352)
T ss_dssp CCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHH
T ss_pred CCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 9999998887 789999999998 899999988765
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=97.75 E-value=5.6e-05 Score=66.41 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=57.5
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (146)
T 1o8x_A 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE 107 (146)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence 3456777888 9999999999999998875 588888888763 4688899999
Q ss_pred cccEEEEEE--CCeEeeeecC
Q 005125 680 SIPAFKIYK--NGSRVKEIPG 698 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~g 698 (713)
++|+++++. +|+.+.+..+
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~~ 128 (146)
T 1o8x_A 108 SIPTLIGVDADSGDVVTTRAR 128 (146)
T ss_dssp SSSEEEEEETTTCCEEESCHH
T ss_pred CCCEEEEEECCCCeEEEecch
Confidence 999999997 7888776543
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.8e-05 Score=67.48 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=60.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC---------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--------------------------------------- 668 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--------------------------------------- 668 (713)
..+|+.|+. |++|+.+.|.++++.++++++.+...+...
T Consensus 23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~~ 102 (175)
T 3gyk_A 23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANETG 102 (175)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHHH
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHH
Confidence 456667887 999999999999999989887766666432
Q ss_pred ------------------------------cHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 669 ------------------------------HPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 669 ------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
...++..+||.++|||++ +|+ .+.|. +.+.|.+.|++.
T Consensus 103 l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~ 171 (175)
T 3gyk_A 103 VLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRA 171 (175)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHH
Confidence 224566789999999876 775 56788 999999999865
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=97.72 E-value=6.8e-05 Score=65.65 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (144)
T 1i5g_A 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK 107 (144)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence 3466777888 9999999999999998875 588888888863 4688899999
Q ss_pred cccEEEEEE--CCeEeeeec
Q 005125 680 SIPAFKIYK--NGSRVKEIP 697 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~ 697 (713)
++|+++++. +|+.+....
T Consensus 108 ~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 108 SIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCcEEeccc
Confidence 999999995 788877653
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.72 E-value=6.6e-05 Score=65.74 Aligned_cols=69 Identities=12% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (144)
T 1o73_A 28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE 107 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence 3456777888 9999999999999998875 588888888863 4688889999
Q ss_pred cccEEEEEE--CCeEeeeec
Q 005125 680 SIPAFKIYK--NGSRVKEIP 697 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~ 697 (713)
.+|+++++. +|+.+....
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 108 SIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCeEEecch
Confidence 999999998 788877653
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=63.88 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=64.0
Q ss_pred cCCceEEEeec--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEE-C-CeEeeeec
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYK-N-GSRVKEIP 697 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~-~-g~~~~~~~ 697 (713)
.....++.|++ |..|+.|.+.+ +++.+.. .+.+++++|++. ...+...|+|.++|+++|+. + |+.+..+.
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~ 120 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWH 120 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEES
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecC
Confidence 45677777888 99999997543 2333222 258999999976 34688899999999999986 3 77888887
Q ss_pred CCCHHHHHHHHHhh
Q 005125 698 GHQCELLEKSVKLY 711 (713)
Q Consensus 698 g~~~~~~~~~~~~~ 711 (713)
|.+++++.+.|+++
T Consensus 121 g~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 121 QLDVSSFLDQVTGF 134 (153)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 77999998888765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00032 Score=58.27 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHH
Q 005125 270 YNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIE---ALVECKEAIRID-P-CYHRAHHRLAMLYFRLGEAE 344 (713)
Q Consensus 270 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~ 344 (713)
........+...|.+.+..++....+.+++|.++....+... ++..++..+..+ | ..-++++.||..++++|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344556777888888888888889999999999999887766 999999988876 5 45788999999999999999
Q ss_pred HHHHHHHHHhhhhccccH
Q 005125 345 KAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 345 ~A~~~~~~al~~~~p~~~ 362 (713)
+|+.+++.+++ .+|++.
T Consensus 92 ~A~~~~~~lL~-~eP~n~ 108 (126)
T 1nzn_A 92 KALKYVRGLLQ-TEPQNN 108 (126)
T ss_dssp HHHHHHHHHHH-HCTTCH
T ss_pred HHHHHHHHHHH-hCCCCH
Confidence 99999999999 999885
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=63.49 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=63.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH--------------------------hhHHHcCCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP--------------------------YIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~--------------------------~~~~~~~v~ 679 (713)
..+++.|++ |++|....|.+.++.++++ ++.++.|+.|..+ .++..++|.
T Consensus 33 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 112 (143)
T 4fo5_A 33 RYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLR 112 (143)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGG
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCCC
Confidence 456667888 9999999999999999985 4889999888432 466789999
Q ss_pred cccEEEEEE-CCeEeeeecCCCHHHHHHHHHh
Q 005125 680 SIPAFKIYK-NGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
.+|+++++. +|+.+.+.. ..++|.+.|++
T Consensus 113 ~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ 142 (143)
T 4fo5_A 113 KGFKNFLINDEGVIIAANV--TPEKLTEILKA 142 (143)
T ss_dssp GCCCEEEECTTSBEEEESC--CHHHHHHHHTC
T ss_pred CCCcEEEECCCCEEEEccC--CHHHHHHHHHh
Confidence 999877775 788887654 46888888764
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.69 E-value=8.1e-05 Score=66.94 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVS 679 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~ 679 (713)
...+++.|++ |++|+...|.+.++.++++ ++.++.|++|.. ..++..++|.
T Consensus 48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 127 (165)
T 3s9f_A 48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE 127 (165)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC
Confidence 3456677888 9999999999999998875 578888888876 6788999999
Q ss_pred cccEEEEEE--CCeEeeeec
Q 005125 680 SIPAFKIYK--NGSRVKEIP 697 (713)
Q Consensus 680 ~~Pt~~~~~--~g~~~~~~~ 697 (713)
.+|+++++. +|+.+.+..
T Consensus 128 ~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 128 SIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEeCCCCEEEeccc
Confidence 999999998 388777644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00066 Score=57.52 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=92.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARF------EDALALYDRAIAINSSK--------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
+.|.+++.|..........|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6799999999999999999999 99999999999876632 3455566644 5669999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
+.++...+.+|...|..-.++|+...|...+.+++. +.|...
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~ 128 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPL 128 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcH
Confidence 999888999999999999999999999999999999 888874
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=66.44 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=65.2
Q ss_pred CceEEEeec--Cch-hHHHHHHHHHHHHhC------CCcEEEEEeCCCc----------------------------Hhh
Q 005125 630 GMAVVLFCS--KAE-HKQVLQLMEQVCKRF------PSVNFLKVEVEDH----------------------------PYI 672 (713)
Q Consensus 630 ~~~vv~f~~--cg~-c~~~~~~~~~l~~~~------p~~~~~~v~~d~~----------------------------~~~ 672 (713)
..+++.|++ |++ |....|.+.++.+++ +++.++.|.+|.. ..+
T Consensus 27 k~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (171)
T 2rli_A 27 QWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQA 106 (171)
T ss_dssp SEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHHH
T ss_pred CEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHH
Confidence 456666887 998 999999999998876 4788888887731 247
Q ss_pred HHHcCCCccc---------------EE-EEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 673 AKSEGVSSIP---------------AF-KIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 673 ~~~~~v~~~P---------------t~-~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+..++|..+| ++ ++-++|+.+..+.|. +.++|.+.|++.
T Consensus 107 ~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 162 (171)
T 2rli_A 107 SHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRH 162 (171)
T ss_dssp HHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7789999888 54 444689999999998 888998888765
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=5.1e-05 Score=62.31 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=53.6
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-------HhhHHHcCCCcccEEEEEECCeEeeeec---CC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-------PYIAKSEGVSSIPAFKIYKNGSRVKEIP---GH 699 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~---g~ 699 (713)
.+++|+. |++|+.+.++|+++...+++ +..+|++.. ..+...+|+.++|++ |.+|+.++... +.
T Consensus 13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~~ 88 (105)
T 1kte_A 13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLESM 88 (105)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHH
T ss_pred CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHHH
Confidence 4666776 99999999999987766655 444555544 357778899999996 56898766432 22
Q ss_pred -CHHHHHHHHHhh
Q 005125 700 -QCELLEKSVKLY 711 (713)
Q Consensus 700 -~~~~~~~~~~~~ 711 (713)
...+|.++|+..
T Consensus 89 ~~~g~L~~~l~~~ 101 (105)
T 1kte_A 89 HKRGELLTRLQQV 101 (105)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHCCcHHHHHHHc
Confidence 356677777653
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=65.65 Aligned_cols=82 Identities=10% Similarity=0.238 Sum_probs=65.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc-----HhhHHHcCCC---------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH-----PYIAKSEGVS--------------------- 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~-----~~~~~~~~v~--------------------- 679 (713)
..+++.|++ |++|....|.+.++.+.++ ++.++.|++|.. ..+...+++.
T Consensus 61 k~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 140 (186)
T 1jfu_A 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGR 140 (186)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTC
T ss_pred CEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccc
Confidence 456667888 9999999999999998875 688888888754 3455666664
Q ss_pred --cccEEEEE-ECCeEeeeecCC-C--HHHHHHHHHhh
Q 005125 680 --SIPAFKIY-KNGSRVKEIPGH-Q--CELLEKSVKLY 711 (713)
Q Consensus 680 --~~Pt~~~~-~~g~~~~~~~g~-~--~~~~~~~~~~~ 711 (713)
.+|+++++ ++|+.+..+.|. + .++|.++|+..
T Consensus 141 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 141 ALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp CSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence 89998888 689999999887 3 78899988875
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.77 E-value=8.3e-06 Score=73.04 Aligned_cols=82 Identities=10% Similarity=0.107 Sum_probs=63.4
Q ss_pred CceEEEeec--CchhHHHHHHHHH-HHHhCC---CcEEEEEeCCCcHhhHHHcC------------------------CC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQ-VCKRFP---SVNFLKVEVEDHPYIAKSEG------------------------VS 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~-l~~~~p---~~~~~~v~~d~~~~~~~~~~------------------------v~ 679 (713)
..+++.|++ |++|+...|.+.+ +...+. ++.++.|++|+.+.....+. +.
T Consensus 34 k~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 113 (159)
T 2ls5_A 34 KVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDA 113 (159)
Confidence 456667888 9999999999998 776654 68888898887654443332 56
Q ss_pred cccEEEEE-ECCeEeeeecCCCHHHHHHHHHhh
Q 005125 680 SIPAFKIY-KNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 680 ~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
++|+++++ ++|+.+....|.+++.+.++|++.
T Consensus 114 ~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l 146 (159)
T 2ls5_A 114 GITRNVLIDREGKIVKLTRLYNEEEFASLVQQI 146 (159)
Confidence 79999888 789999988888777888877654
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00018 Score=64.49 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=64.6
Q ss_pred CceEEEeec--Cch-hHHHHHHHHHHHHhC------CCcEEEEEeCCCc----------------------------Hhh
Q 005125 630 GMAVVLFCS--KAE-HKQVLQLMEQVCKRF------PSVNFLKVEVEDH----------------------------PYI 672 (713)
Q Consensus 630 ~~~vv~f~~--cg~-c~~~~~~~~~l~~~~------p~~~~~~v~~d~~----------------------------~~~ 672 (713)
..+++.|++ |++ |....|.+.++.+++ +++.++.|.+|.. ..+
T Consensus 24 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 103 (164)
T 2ggt_A 24 QWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQV 103 (164)
T ss_dssp CEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHH
T ss_pred CEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHH
Confidence 456667887 998 999999999988766 3788888887642 137
Q ss_pred HHHcCCCccc----------------EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 673 AKSEGVSSIP----------------AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 673 ~~~~~v~~~P----------------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+..++|..+| +|++-++|+.+..+.|. ++++|.+.|++.
T Consensus 104 ~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 159 (164)
T 2ggt_A 104 ARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 159 (164)
T ss_dssp HHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 7789999999 44555689999999988 889998888765
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00027 Score=63.91 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=65.4
Q ss_pred CceEEEeec--Cch-hHHHHHHHHHHHHhCC-----CcEEEEEeCCCc----------------------------HhhH
Q 005125 630 GMAVVLFCS--KAE-HKQVLQLMEQVCKRFP-----SVNFLKVEVEDH----------------------------PYIA 673 (713)
Q Consensus 630 ~~~vv~f~~--cg~-c~~~~~~~~~l~~~~p-----~~~~~~v~~d~~----------------------------~~~~ 673 (713)
..+++.|++ |++ |....|.+.++.++++ ++.++.|++|.. ..++
T Consensus 36 k~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 115 (172)
T 2k6v_A 36 KVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAA 115 (172)
T ss_dssp SEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHHH
T ss_pred CEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHHH
Confidence 456666888 997 9999999999998886 689999987742 2455
Q ss_pred HHcC---------------CCcccEEEEEECCeEeeeecCC---CHHHHHHHHHhh
Q 005125 674 KSEG---------------VSSIPAFKIYKNGSRVKEIPGH---QCELLEKSVKLY 711 (713)
Q Consensus 674 ~~~~---------------v~~~Pt~~~~~~g~~~~~~~g~---~~~~~~~~~~~~ 711 (713)
..++ |..+|+++++.+|+.+..+.|. ++++|.+.|++.
T Consensus 116 ~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 116 QTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp HHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred HhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 5555 4578999888899999988877 789999998864
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00076 Score=58.62 Aligned_cols=95 Identities=9% Similarity=0.023 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSK---------ATYRSNKSAALIGLGRQIEALVECKEAIRID------P 324 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 324 (713)
.+++.....++..|.|+.|+.....++.+..++ ..++..+|.+++..++|..|...|+++|... +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 358888899999999999999999987764322 3478899999999999999999999997651 1
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005125 325 -------------------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSS 354 (713)
Q Consensus 325 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 354 (713)
...+..+.+|.||..++++++|+..++.+-
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 113688999999999999999999988753
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=67.36 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCC-----------------------------CcHhhHHHcCC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVE-----------------------------DHPYIAKSEGV 678 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d-----------------------------~~~~~~~~~~v 678 (713)
+++.|++ |++|....|.|.++.+++++ +.|+.|+++ ....++..++|
T Consensus 62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v 141 (218)
T 3u5r_E 62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGA 141 (218)
T ss_dssp EEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTC
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCC
Confidence 6777888 99999999999999998843 899999984 35678899999
Q ss_pred CcccEEEEE-ECCeEeeee---------cCC-CHHHHHHHHHhh
Q 005125 679 SSIPAFKIY-KNGSRVKEI---------PGH-QCELLEKSVKLY 711 (713)
Q Consensus 679 ~~~Pt~~~~-~~g~~~~~~---------~g~-~~~~~~~~~~~~ 711 (713)
..+|+++++ ++|+.+.+. .+. +.+.|++.|++.
T Consensus 142 ~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 142 ACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp CEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 999999998 678877542 122 578888888765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0013 Score=55.74 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=86.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005125 322 IDPCYHRAHHRLAMLYFRLGEA------EKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVI 395 (713)
Q Consensus 322 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 395 (713)
+.|++++.|..........|+. ++-++.|++|+..+.|.....+..+....-....+...++.++|.+.|+.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5788888888888888888888 7888889988884445432222222222222334466799999999999999
Q ss_pred HcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhh
Q 005125 396 SFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEY 436 (713)
Q Consensus 396 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (713)
.+.... +.+|...|..-.+.|+...|...+.+++.+.|..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 986666 7899999999999999999999999999988854
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.43 E-value=5e-05 Score=63.42 Aligned_cols=77 Identities=10% Similarity=0.243 Sum_probs=54.0
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH-------hhHHHcCCCcccEEEEEECCeEeeeecC---
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP-------YIAKSEGVSSIPAFKIYKNGSRVKEIPG--- 698 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~-------~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--- 698 (713)
..+++|+. |++|+.+.++|+++...++. |..+|++..+ .+...+|+.++|++ |.+|+.++...+
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~igg~~~~~~ 94 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRI--FFGKTSIGGYSDLLE 94 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEE--EETTEEEESHHHHHH
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEeCcHHHHH
Confidence 45666777 99999999998765433332 7777877664 78888999999986 458988764432
Q ss_pred C-CHHHHHHHHHhh
Q 005125 699 H-QCELLEKSVKLY 711 (713)
Q Consensus 699 ~-~~~~~~~~~~~~ 711 (713)
. ...+|.++|+..
T Consensus 95 ~~~~~~L~~~L~~~ 108 (114)
T 2hze_A 95 IDNMDALGDILSSI 108 (114)
T ss_dssp HHHTTCHHHHHHHT
T ss_pred HHHCChHHHHHHHc
Confidence 2 345677777653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00079 Score=58.50 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCY---------HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
.+++.-...++..|.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++ ....-...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq-~~k~l~k~ 99 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ-QKKALSKT 99 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHCC---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHHhcC
Confidence 456666778888999999999999987764322 35889999999999999999999999988 22211000
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
... .. . .+. .......... ....++.+.++.||.+++++++|+..++......
T Consensus 100 ~s~-~~--~-------~~~----~ss~p~s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~----------- 152 (167)
T 3ffl_A 100 SKV-RP--S-------TGN----SASTPQSQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ----------- 152 (167)
T ss_dssp -------------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-----------
T ss_pred CCc-cc--c-------ccc----cCCCcccccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-----------
Confidence 000 00 0 000 0000000111 1123788999999999999999999999865422
Q ss_pred CcHHHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVY 457 (713)
Q Consensus 445 ~~~~~~~~lg~~~ 457 (713)
..+.+...+|.+|
T Consensus 153 Rt~kvnm~LakLy 165 (167)
T 3ffl_A 153 RTPKINMLLANLY 165 (167)
T ss_dssp CCHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHh
Confidence 3455677777765
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00018 Score=61.56 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=55.4
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---Hh----hHHHcCCCcccEEEEEECC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH---PY----IAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~---~~----~~~~~~v~~~Pt~~~~~~g 690 (713)
..+...+... .+++|+. |++|+.+.++|+++. +.|..+|++.. +. ++..+++.++|++ |.+|
T Consensus 18 ~~~~~~i~~~--~vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~i~G 88 (130)
T 2cq9_A 18 NQIQETISDN--CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNG 88 (130)
T ss_dssp HHHHHHHHHS--SEEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--EETT
T ss_pred HHHHHHHcCC--cEEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--EECC
Confidence 3455555443 3555766 999999999998863 33455666654 43 7778899999987 4689
Q ss_pred eEeee---ecCC-CHHHHHHHHHhh
Q 005125 691 SRVKE---IPGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~---~~g~-~~~~~~~~~~~~ 711 (713)
+.+.. +.+. ...+|.++|+.+
T Consensus 89 ~~igg~~~l~~~~~~~~L~~~L~~~ 113 (130)
T 2cq9_A 89 TFIGGATDTHRLHKEGKLLPLVHQC 113 (130)
T ss_dssp EEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred EEEcChHHHHHHHHcCcHHHHHHHc
Confidence 87764 3333 445677777654
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00045 Score=63.69 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=63.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cH---hhH-HH-----------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HP---YIA-KS----------------- 675 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~---~~~-~~----------------- 675 (713)
...+++.|++ |++|....|.|.++.+++. ++.++.|++|. .. ... ..
T Consensus 48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~ 127 (190)
T 2vup_A 48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN 127 (190)
T ss_dssp TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCccc
Confidence 3466777888 9999999999999998874 48899998762 11 112 11
Q ss_pred ------------cCCCccc-------EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 676 ------------EGVSSIP-------AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 676 ------------~~v~~~P-------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++|.++| +|++-++|+.+..+.|. +++.|.+.|++.
T Consensus 128 ~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 183 (190)
T 2vup_A 128 AHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183 (190)
T ss_dssp BCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 3777888 55655789999999998 899999888765
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00024 Score=66.59 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=58.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC----------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE---------------------------------------- 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d---------------------------------------- 667 (713)
..+++.|+. |++|+.+.|.++++.+. ++.+......
T Consensus 87 k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~ 164 (211)
T 1t3b_A 87 KHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP 164 (211)
T ss_dssp SEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred CEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHH
Confidence 456777888 99999999999998763 3544433221
Q ss_pred ----CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 668 ----DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 668 ----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
....++..+||.++|||++ .+|+ .++|. +++.|.++|++..
T Consensus 165 ~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~~ 210 (211)
T 1t3b_A 165 NIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEETA 210 (211)
T ss_dssp SHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhcc
Confidence 2345677899999999887 6886 67898 9999999998754
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=96.50 E-value=2.5e-05 Score=68.34 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=54.7
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcH-------------------------hhHHHcCCC
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHP-------------------------YIAKSEGVS 679 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~-------------------------~~~~~~~v~ 679 (713)
.+++.|++ |++|+...|.+.++.+.+ +++.++.|++|..+ .++..++|.
T Consensus 28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (143)
T 2lus_A 28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT 107 (143)
Confidence 56777888 999999999999998877 46888888877553 688889999
Q ss_pred cccEEEEEE-CCeEeeee
Q 005125 680 SIPAFKIYK-NGSRVKEI 696 (713)
Q Consensus 680 ~~Pt~~~~~-~g~~~~~~ 696 (713)
++|+++++. +|+.+...
T Consensus 108 ~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 108 GIPALVIVKKDGTLISMN 125 (143)
Confidence 999999987 78877754
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00031 Score=66.24 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=56.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV----------------------------------------- 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~----------------------------------------- 666 (713)
..+++.|+. |++|+.+.|.++++.+. ++.+..+..
T Consensus 87 k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~ 164 (216)
T 1eej_A 87 KHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD 164 (216)
T ss_dssp CEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHH
Confidence 456777888 99999999999998764 444443322
Q ss_pred ---CCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 667 ---EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 667 ---d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+....++..+||.++||+ ++.+|. .++|. +++.|.++|++.
T Consensus 165 ~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 165 VDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp CCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 223457788999999998 566784 56888 899999998765
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00045 Score=54.91 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=50.3
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----Cc----HhhHHHcCCCcccEEEEEECCeEeeeecCCC
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-----DH----PYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ 700 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-----~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 700 (713)
.+++|+. |+.|+.+.++++++.. .+-.+|++ +. +++....++.++|++.+ +|+. +.|++
T Consensus 13 ~v~ly~~~~Cp~C~~~~~~L~~~gi-----~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~ 82 (92)
T 3ic4_A 13 EVLMYGLSTCPHCKRTLEFLKREGV-----DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN 82 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHHTC-----CCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred eEEEEECCCChHHHHHHHHHHHcCC-----CcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence 4666666 9999999999987642 23345554 23 66777889999998765 7753 56789
Q ss_pred HHHHHHHHH
Q 005125 701 CELLEKSVK 709 (713)
Q Consensus 701 ~~~~~~~~~ 709 (713)
+++|.++|+
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999986
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00091 Score=59.65 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=62.4
Q ss_pred eEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC---------------------CcHhhHHHcCCCc----c
Q 005125 632 AVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE---------------------DHPYIAKSEGVSS----I 681 (713)
Q Consensus 632 ~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d---------------------~~~~~~~~~~v~~----~ 681 (713)
+++.|+ + |++|....|.+.++.++++ ++.++.|+.| ....++..|+|.+ +
T Consensus 32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~ 111 (161)
T 3drn_A 32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA 111 (161)
T ss_dssp EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCC
T ss_pred EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCccc
Confidence 677788 6 9999999999999998873 4899999887 4557888999999 9
Q ss_pred cEEEEE-ECCeEeeeecC-C-C---HHHHHHHHHh
Q 005125 682 PAFKIY-KNGSRVKEIPG-H-Q---CELLEKSVKL 710 (713)
Q Consensus 682 Pt~~~~-~~g~~~~~~~g-~-~---~~~~~~~~~~ 710 (713)
|+++++ ++|+.+....| . . .+++.+.|++
T Consensus 112 P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~ 146 (161)
T 3drn_A 112 RITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ 146 (161)
T ss_dssp CEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 987777 58999999888 2 3 3455555543
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00039 Score=63.91 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=66.8
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
..+++.|+ + |++|....|.|.++.+++. ++.++.|++|. ...++..++|.
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (187)
T 1we0_A 32 KWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVL 111 (187)
T ss_dssp SEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCE
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCCC
Confidence 45677788 6 9999999999999988774 68888888875 24577889998
Q ss_pred ------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 ------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 ------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
.+|+++++ ++|+.+....|. +.++|.+.|++.
T Consensus 112 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 112 NEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp ETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred cCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 89999998 689999888775 578888888764
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00057 Score=63.25 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=66.6
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------cHhhHHHcCCC
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-------------------------HPYIAKSEGVS 679 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-------------------------~~~~~~~~~v~ 679 (713)
..+++.|+ + |++|....|.+.++.++++ ++.++.|++|. ...++..|+|.
T Consensus 46 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 125 (195)
T 2bmx_A 46 KWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVL 125 (195)
T ss_dssp CEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCB
T ss_pred CcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCc
Confidence 45677788 6 9999999999999988874 58899888874 23577788999
Q ss_pred -----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 -----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 -----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
.+|+++++ ++|+.+....|. +.++|.+.|++.
T Consensus 126 ~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 168 (195)
T 2bmx_A 126 NADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168 (195)
T ss_dssp CTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred ccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99998888 589998888765 578999888875
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00029 Score=61.40 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=54.6
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---H----hhHHHcCCCcccEEEEEECC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH---P----YIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~---~----~~~~~~~v~~~Pt~~~~~~g 690 (713)
..+...+... .+++|+. |++|+.+.++|+++. +.+..+|++.. + .++..+|+.++|++ |.+|
T Consensus 40 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--fi~G 110 (146)
T 2ht9_A 40 NQIQETISDN--CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNG 110 (146)
T ss_dssp HHHHHHHHHC--SEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--EETT
T ss_pred HHHHHHhcCC--CEEEEECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE--EECC
Confidence 4555555443 3555776 999999999999874 23445555544 4 37778999999987 5689
Q ss_pred eEeeee---cCC-CHHHHHHHHHhh
Q 005125 691 SRVKEI---PGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~---~g~-~~~~~~~~~~~~ 711 (713)
+.++.. .+. ....|.++|+..
T Consensus 111 ~~igG~d~l~~l~~~g~L~~~L~~~ 135 (146)
T 2ht9_A 111 TFIGGATDTHRLHKEGKLLPLVHQC 135 (146)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEeCchHHHHHHHcChHHHHHHHc
Confidence 876542 233 344566666653
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00094 Score=59.46 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred ceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC-----------------------cHhhHHHcCCC---
Q 005125 631 MAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED-----------------------HPYIAKSEGVS--- 679 (713)
Q Consensus 631 ~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~-----------------------~~~~~~~~~v~--- 679 (713)
.+++.|+ + |++|....|.+.++.+++ .++.++.|++|. ...++..++|.
T Consensus 38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~ 117 (160)
T 1xvw_A 38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ 117 (160)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence 5677787 6 999999999999999888 358899988874 45688889998
Q ss_pred -ccc---EEEEEECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 -SIP---AFKIYKNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 -~~P---t~~~~~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
++| +|++-++|+.+....|. ..++|.+.|++.
T Consensus 118 ~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 118 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred CCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 55555789999888876 346666666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0024 Score=53.10 Aligned_cols=78 Identities=6% Similarity=-0.120 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKAR---FEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
.+.+.+.+|.++.+..+ ..++|.+++..++.+|. .-+.++.+|..+.++|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45678888888887654 45688888888888874 467888899999999999999999999999999887776554
Q ss_pred HH
Q 005125 334 AM 335 (713)
Q Consensus 334 a~ 335 (713)
..
T Consensus 119 ~~ 120 (134)
T 3o48_A 119 SM 120 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=62.77 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=59.5
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----------------------------------------
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE----------------------------------------- 667 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d----------------------------------------- 667 (713)
.+|++|+. |+.|+.+.+.+.++.+. +++.+..++..
T Consensus 99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~~ 177 (241)
T 1v58_A 99 VIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPANV 177 (241)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSSC
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccccC
Confidence 35667877 99999999999988776 46766655442
Q ss_pred ---------CcHhhHHHcCCCcccEEEEEE-CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 668 ---------DHPYIAKSEGVSSIPAFKIYK-NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 668 ---------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
....++..+||.++|||++.. +|+ +..++|+ +.+.|.++|++.
T Consensus 178 ~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~ 231 (241)
T 1v58_A 178 STEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNK 231 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHH
Confidence 123456778999999999887 364 4678998 999999998765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0056 Score=51.61 Aligned_cols=79 Identities=6% Similarity=-0.123 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKAR---FEDALALYDRAIAINSS-KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..+++.+++|.++.+..+ ..+++.+++..+...|. .-+.++.+|..++++|+|++|..+++.+|+..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 456678888888887654 45688888888888874 46788888999999999999999999999999988777654
Q ss_pred HHH
Q 005125 333 LAM 335 (713)
Q Consensus 333 la~ 335 (713)
...
T Consensus 117 k~~ 119 (144)
T 1y8m_A 117 KSM 119 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0057 Score=51.32 Aligned_cols=93 Identities=10% Similarity=0.217 Sum_probs=73.5
Q ss_pred cceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC
Q 005125 612 NLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~ 689 (713)
....+.+.+++..++......|+-|+. |++| .+.|.+++..++++.|+.++. +.++..+++. .|++++|+.
T Consensus 22 ~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~-~~~vvlfkk 94 (124)
T 2l4c_A 22 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGISTD---SEVLTHYNIT-GNTICLFRL 94 (124)
T ss_dssp CCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEECC---HHHHHHTTCC-SSCEEEEET
T ss_pred cceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEECh---HHHHHHcCCC-CCeEEEEEc
Confidence 334477778888888776666766776 7777 677888888888899998865 7789999998 899999997
Q ss_pred Ce-EeeeecC----C-CHHHHHHHHHhh
Q 005125 690 GS-RVKEIPG----H-QCELLEKSVKLY 711 (713)
Q Consensus 690 g~-~~~~~~g----~-~~~~~~~~~~~~ 711 (713)
+. ....+.| . +.+.|.+||+..
T Consensus 95 fde~~~~~~g~~~~~~~~~~L~~FI~~n 122 (124)
T 2l4c_A 95 VDNEQLNLEDEDIESIDATKLSRFIEIN 122 (124)
T ss_dssp TTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCceeecCcccCCCCHHHHHHHHHHh
Confidence 53 4455776 4 999999999875
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00081 Score=60.68 Aligned_cols=82 Identities=10% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC-----------CcHhhH--------------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE-----------DHPYIA-------------------- 673 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d-----------~~~~~~-------------------- 673 (713)
.+.+++.|++ |++|+ ..|.|.++.+++. ++.++.|++| ....+.
T Consensus 32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 110 (171)
T 3cmi_A 32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGN 110 (171)
T ss_dssp TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCcc
Confidence 3456677888 99999 9999999998874 4888888653 111111
Q ss_pred ----------HHcCCCccc-------EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 674 ----------KSEGVSSIP-------AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 674 ----------~~~~v~~~P-------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
..++|..+| +|++-++|+.+..+.|. +++.|.+.|++.
T Consensus 111 ~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (171)
T 3cmi_A 111 EDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166 (171)
T ss_dssp BCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHH
T ss_pred chHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 135788899 45555789999999997 888888888765
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00077 Score=62.53 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=65.6
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |++|....|.+.++.+++ .++.++.|+.|. ...++..+
T Consensus 34 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (198)
T 1zof_A 34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDY 113 (198)
T ss_dssp SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHT
T ss_pred CcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHHh
Confidence 45677788 6 999999999999988776 358888888874 34677889
Q ss_pred CCC-----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS-----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|+.+....|. +.++|.+.|++.
T Consensus 114 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 114 DVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp TCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred CCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 999 99988777 589998888775 568888888764
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0027 Score=50.00 Aligned_cols=73 Identities=12% Similarity=0.268 Sum_probs=54.8
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc-----CCCcccEEEEEECCeEeeeecCCCHHH
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE-----GVSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
..|++|.. |+.|..+..+|.+. ++.|.++|++..+...+.+ |.+++|+++ +.+|.. +.|.+.++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~---l~~~~~~e 74 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGST---LTNPSADE 74 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCE---EESCCHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEE---EeCCCHHH
Confidence 45677777 99999999988653 4778899999887655433 788999754 456653 45778999
Q ss_pred HHHHHHhhh
Q 005125 704 LEKSVKLYS 712 (713)
Q Consensus 704 ~~~~~~~~~ 712 (713)
|+++|++..
T Consensus 75 l~~~L~el~ 83 (92)
T 2lqo_A 75 VKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00093 Score=60.95 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=62.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cH---hhHHH-------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HP---YIAKS------------------- 675 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~---~~~~~------------------- 675 (713)
+.+++.|++ |++|....|.|.++.++++ ++.++.|++|. .. ..+..
T Consensus 50 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~ 129 (181)
T 2p31_A 50 SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGA 129 (181)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTS
T ss_pred CEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCccc
Confidence 456667888 9999999999999998874 38889998753 11 12222
Q ss_pred -----cCCCccc--------EEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 676 -----EGVSSIP--------AFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 676 -----~~v~~~P--------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++..+| +|++-++|+.+..+.|. ++++|.+.|++..
T Consensus 130 ~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 130 HPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp CHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred hhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 1244578 66666889999999998 9999999998764
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.056 Score=46.45 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=109.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR--I--------- 322 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--------- 322 (713)
+-|..++.-..++..++-.|.|..|+-++.. -+...+.+..+.||..+++|..|+..++..++ .
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 5566667778888999999999988877653 35577788889999999999999999999883 2
Q ss_pred ------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHH-----------HHHHHHHHHHhhcH
Q 005125 323 ------DPCYHR-AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHK-----------HLTKCNEARELKRW 384 (713)
Q Consensus 323 ------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 384 (713)
+|.+.+ .+..+|.++...|+.++|+.+|..... .+|-.......+.. ....+..-.+...+
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~-~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~ 181 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG-KSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYV 181 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHTTCCCCCC-----------CHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC-CccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhh
Confidence 233333 456789999999999999999988877 66554321111000 00001100011111
Q ss_pred HHHH--------HHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCCh
Q 005125 385 NDLL--------KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCL 434 (713)
Q Consensus 385 ~~A~--------~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (713)
.... ...++-...-|.-........+..|+.+|-.++...+|...-..+|
T Consensus 182 ~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 182 SDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 1111 2222333334544334445567888999999999999987766555
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0058 Score=50.80 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=59.2
Q ss_pred HHHHHHHHcc---cHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKAS---KYKEACYAYSEGLEHEAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.|+++.+.. +..+++..++..+...|. .-+.++.||..+.++|+|++|..+.+..+++.|++..+..
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 6788887765 456799999999988884 4789999999999999999999999999999999977655
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00042 Score=58.04 Aligned_cols=68 Identities=15% Similarity=0.318 Sum_probs=48.1
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHH-HHHHHHHHHhCCCcEEEEEeCCCcH-------hhHHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQV-LQLMEQVCKRFPSVNFLKVEVEDHP-------YIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~-~~~~~~l~~~~p~~~~~~v~~d~~~-------~~~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+... .|++|+. |++|+.+ .++|+++.. +.+.|..+|++..+ .+...+|+.++|++ |.+|
T Consensus 17 ~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g 90 (118)
T 3c1r_A 17 HVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YING 90 (118)
T ss_dssp HHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 444444333 4566766 9999999 888866531 23777788887654 57888999999975 7799
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 91 ~~ig 94 (118)
T 3c1r_A 91 KHIG 94 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0017 Score=58.28 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cH---hhHH-Hc----------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HP---YIAK-SE---------------- 676 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~---~~~~-~~---------------- 676 (713)
...+++.|++ |++|....|.+.++.+++. ++.++.|++|. .. .... .+
T Consensus 32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (170)
T 2p5q_A 32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGEN 111 (170)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCCc
Confidence 3456667888 9999999999999998874 48899998752 11 1222 22
Q ss_pred -------------CC--Cccc---E-EEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 -------------GV--SSIP---A-FKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 -------------~v--~~~P---t-~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+| ..+| + |++-++|+.+..+.|. +++.|.+.|++.
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (170)
T 2p5q_A 112 ASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166 (170)
T ss_dssp BCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred hHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHH
Confidence 34 6678 4 4544789999999998 888999988875
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0011 Score=52.17 Aligned_cols=56 Identities=13% Similarity=0.325 Sum_probs=43.4
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC--CcHhhHHHc-CCCcccEEEEEECCeEee
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE--DHPYIAKSE-GVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d--~~~~~~~~~-~v~~~Pt~~~~~~g~~~~ 694 (713)
.+++|+. |+.|+.+.+++++. ++.|..+|++ ..+++...+ ++.++|++ |.+|+.+.
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l--~~~g~~i~ 67 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQI--FIGDYHVG 67 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSSCCSCEE--EETTEECC
T ss_pred eEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCCCCcCEE--EECCEEEe
Confidence 4666776 99999999999875 2567788888 566788888 99999987 45887543
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0031 Score=50.70 Aligned_cols=59 Identities=12% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc-----CCCcccEEEEEECCeEee
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE-----GVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~ 694 (713)
....|++|+. |+.|+.+.++|++.. +.|..+|++..+.....+ |+.++|++ |.+|+.++
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKG-----VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-----CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 3456777777 999999999998763 556778888777655544 89999976 67887664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.14 Score=52.26 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC----HH-
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATY-----RSNKSAALIG-LGRQIEALVECKEAIRIDPCY----HR- 328 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~----~~- 328 (713)
.+.+.+|..|...|++++-.+++......-+.-+.+ ...+-..+.. -+..+.-++.+..+++-..+. ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999888765544333222 2223333322 255566667777776542222 11
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcC----C--CC
Q 005125 329 -AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFG----A--DS 401 (713)
Q Consensus 329 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p--~~ 401 (713)
.-..+|..|+..|+|.+|+..+.+..+.+...+ .....+..++.....+...+++.++...+.++.... + .-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 233789999999999999999988877332211 123344555556666666677777766666664432 1 11
Q ss_pred hHHHHHHHHHHHH-HccCHHHHHHHhhccc
Q 005125 402 APQVYALQAEALL-RLQRHQEAHDSYNKSP 430 (713)
Q Consensus 402 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al 430 (713)
.+.+...-|..++ ..++|.+|..+|-+++
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1233344456666 5666666666666554
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.003 Score=58.71 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=65.0
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |+.|....+.|.++.+++ .++.++.|++|. ...++..|
T Consensus 37 k~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~y 116 (202)
T 1uul_A 37 KWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSY 116 (202)
T ss_dssp SEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHH
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHc
Confidence 45677788 6 999999999999998887 468999998874 23577788
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|+.+....|. +.++|.+.|+..
T Consensus 117 gv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 117 GVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 999 99988777 579888877654 468888888764
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0025 Score=58.34 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=60.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cHhhHH-----------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HPYIAK----------------------- 674 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~~~~~----------------------- 674 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.|.+|. ...+..
T Consensus 47 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 126 (187)
T 3dwv_A 47 SPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENA 126 (187)
T ss_dssp SCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-C
T ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCcch
Confidence 466777888 9999999999999998874 48888887651 122211
Q ss_pred -------------HcCCCccc---EEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 675 -------------SEGVSSIP---AFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 675 -------------~~~v~~~P---t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+++..+| ++.++ ++|..+..+.|. +++.|.+.|++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~l 181 (187)
T 3dwv_A 127 HPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181 (187)
T ss_dssp CHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 12344677 55554 789999999998 999999999875
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0034 Score=59.17 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=65.5
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |+.|....+.|.++.+++ .++.++.|.+|. ...++..|
T Consensus 57 k~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~y 136 (220)
T 1zye_A 57 KYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDY 136 (220)
T ss_dssp SEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHh
Confidence 56677788 5 999999999999999887 578898888764 23577889
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|+++++ ++|+.+....|. +.++|.+.|+..
T Consensus 137 gv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l 183 (220)
T 1zye_A 137 GVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183 (220)
T ss_dssp TCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 998 99999988 579888776554 568888888764
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.2 Score=43.08 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHcccHHHHH-------
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK-----AMASARLRGNLLFKASKYKEAC------- 513 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~------- 513 (713)
....+..+|.++...|+.++|+.+|......+|-.+.+-+++-.-. .-.-....|.--.+...+...+
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s 192 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLS 192 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhcc
Confidence 4456778899999999999999999999988887665543210000 0000000000000001111111
Q ss_pred -HHHHHHhccCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 514 -YAYSEGLEHEAYNSVL-LCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 514 -~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
...++-.+.-|.-... ..+.|..|+.+|-.++...+|...-..+|..
T Consensus 193 ~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 193 PSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 2222333344544333 3456788999999999999999999999864
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0037 Score=55.99 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=59.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cHh---h-HHHc-----------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HPY---I-AKSE----------------- 676 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~~---~-~~~~----------------- 676 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.|++|. ... . ...+
T Consensus 32 k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 111 (169)
T 2v1m_A 32 HVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDA 111 (169)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTTS
T ss_pred CEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCccc
Confidence 456667888 9999999999999998874 48888888753 111 1 1211
Q ss_pred ------------C-----CCcccEE-EEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 ------------G-----VSSIPAF-KIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 ------------~-----v~~~Pt~-~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+ |..+|++ ++-++|+.+..+.|. +++.|.+.|++.
T Consensus 112 ~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 165 (169)
T 2v1m_A 112 DDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165 (169)
T ss_dssp CHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred cHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 3 3335654 444689999999998 888898888765
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0032 Score=57.91 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCc------------------------------------
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDH------------------------------------ 669 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~------------------------------------ 669 (713)
...+|+.|+. |++|..+.|.++++.+++++ +.|..+++.-.
T Consensus 25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~ 104 (192)
T 3h93_A 25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKK 104 (192)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcC
Confidence 3456777888 99999999999999999974 67776665310
Q ss_pred -------------------------------------HhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 670 -------------------------------------PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 670 -------------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
...+...||.++|||++ +|+.+....|. +.+.+.+.|+..
T Consensus 105 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~l 182 (192)
T 3h93_A 105 LATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADYL 182 (192)
T ss_dssp CCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHHH
Confidence 11244568999999876 88877665577 888888877654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.037 Score=46.69 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=58.3
Q ss_pred HHHHHHHHccc---HHHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKASK---YKEACYAYSEGLEHEAY-NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.|+++.+..+ ..+++..++..+...|. .-+.++.||..+.++|+|++|..+++..|+..|++..+..
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 68888887654 56899999999998884 5789999999999999999999999999999998865543
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0029 Score=57.76 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=59.5
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC--------cHhh---HHH-------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED--------HPYI---AKS------------------- 675 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~--------~~~~---~~~------------------- 675 (713)
..+++.|++ |++|....|.|.++.+++. ++.++.|++|. ...+ +..
T Consensus 48 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~ 127 (183)
T 2obi_A 48 FVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAH 127 (183)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTSC
T ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcchh
Confidence 456666888 9999999999999998874 48888887652 1111 111
Q ss_pred --c----------C-----CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 676 --E----------G-----VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 676 --~----------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+ + |..+|++.++ ++|+.+..+.|. ++++|.+.|++.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 128 PLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp HHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred HHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence 1 3 3346876655 689999999998 889998888764
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.017 Score=54.54 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=70.5
Q ss_pred hhHHHHHhhcCCce-EEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCC--cHhhHHHcCCC--cccEEEEEECC
Q 005125 619 NERFRHFVTSPGMA-VVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVED--HPYIAKSEGVS--SIPAFKIYKNG 690 (713)
Q Consensus 619 ~~~~~~~l~~~~~~-vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~--~~~~~~~~~v~--~~Pt~~~~~~g 690 (713)
.+.+........+. +++|.. |++|..+.+.+.++++.+ +.+.|+.+|.+. .+.++..+|+. .+|++.++..+
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~ 199 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTL 199 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESS
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECC
Confidence 34555555444333 344655 889999999999999988 569999999974 77788999998 79999999853
Q ss_pred e-Eeeeec-CC-CHHHHHHHHHhhh
Q 005125 691 S-RVKEIP-GH-QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~-~~~~~~-g~-~~~~~~~~~~~~~ 712 (713)
. ....++ |. +++.|.+||+.+.
T Consensus 200 ~~~ky~~~~~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 200 DDEWDTLPTAEVSVEHVQNFCDGFL 224 (227)
T ss_dssp SCCEEEETTCCCCHHHHHHHHHHHH
T ss_pred CCccccCCcCCCCHHHHHHHHHHHh
Confidence 3 233444 45 9999999999874
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.12 Score=56.38 Aligned_cols=242 Identities=13% Similarity=-0.006 Sum_probs=131.1
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL---------- 340 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------- 340 (713)
+.+++..-+.+|.. .|.+...-+..+.+....|+..+|....+++.......+.....+-..+...
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 46677776665554 3777777788888888888888787777776655444444444444444433
Q ss_pred --------CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-cCCCChHHHHHHHHH
Q 005125 341 --------GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS-FGADSAPQVYALQAE 411 (713)
Q Consensus 341 --------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~la~ 411 (713)
|+...|...... +.+........+. .+...-..+ ...+. ..+..........+.
T Consensus 160 R~~~al~~~~~~~a~~l~~~----l~~~~~~~a~~~~------al~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAII------SLANNPNTV-------LTFARTTGATDFTRQMAAVAF 222 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHH------HHHHCGGGH-------HHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHh----CCHHHHHHHHHHH------HHHhChHhH-------HHHHhccCCChhhHHHHHHHH
Confidence 333333322211 1111100000000 000000000 00111 112211122333455
Q ss_pred HHHHccCHHHHHHHhhcccc---CChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 412 ALLRLQRHQEAHDSYNKSPK---FCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVK 488 (713)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 488 (713)
......+.+.|...+..... +.+.. .......++..+...+...++...+.++..... +......
T Consensus 223 ~rlar~d~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~-- 290 (618)
T 1qsa_A 223 ASVARQDAENARLMIPSLAQAQQLNEDQ---------IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIER-- 290 (618)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCHHH---------HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHH--
T ss_pred HHHHhcCHHHHHHHHHhhhhccCCCHHH---------HHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHH--
Confidence 55556688888888866532 22211 122333444444445535677777777655433 3333321
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005125 489 MAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 489 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 555 (713)
..+ ..++.|+++.|...|...-......+...+.+|.++..+|+.++|...|+++..
T Consensus 291 ---------~~r-~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 ---------RVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ---------HHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---------HHH-HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 233 345679999999999876665445678889999999999999999999998875
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0033 Score=57.83 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=65.2
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |++|....|.|.++.+++ .++.++.|++|. ...++..|
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 111 (192)
T 2h01_A 32 KYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSY 111 (192)
T ss_dssp CEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHh
Confidence 45677788 5 999999999999988877 568888888874 23577889
Q ss_pred CCC-----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS-----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|++.++ ++|+.+....|. +.++|.+.|+..
T Consensus 112 gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 112 DVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp TCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred CCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 999 89999888 689988887764 478888877754
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0049 Score=57.10 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=56.0
Q ss_pred CCceEEEeec--Cch-hHHHHHHHHHHHHhC-----CCcEEEEEeCCC----------------------------cHhh
Q 005125 629 PGMAVVLFCS--KAE-HKQVLQLMEQVCKRF-----PSVNFLKVEVED----------------------------HPYI 672 (713)
Q Consensus 629 ~~~~vv~f~~--cg~-c~~~~~~~~~l~~~~-----p~~~~~~v~~d~----------------------------~~~~ 672 (713)
...+++.|++ |++ |....|.|.++.+.+ .++.++.|++|. ...+
T Consensus 41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 120 (200)
T 2b7k_A 41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA 120 (200)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence 3456777887 997 999999998865543 368888887762 1246
Q ss_pred HHHcCCC-ccc----------------EEEEEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 673 AKSEGVS-SIP----------------AFKIYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 673 ~~~~~v~-~~P----------------t~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
+..|||. ..| +|++-++|+.+..+.|. +++.+.+.|.+
T Consensus 121 ~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~ 176 (200)
T 2b7k_A 121 CKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE 176 (200)
T ss_dssp HHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred HHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 6778887 444 35666789999999886 76666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.1 Score=59.68 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=31.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 303 LIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
....|++++|.+.++ ..++...|..+|..+...++++.|..+|.++-.
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 345566666665543 234567777778877788888888777776544
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0084 Score=48.57 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=47.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----HhhH----HHcCCCcccEEEEEECCeEeeeecC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----PYIA----KSEGVSSIPAFKIYKNGSRVKEIPG 698 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----~~~~----~~~~v~~~Pt~~~~~~g~~~~~~~g 698 (713)
...+++|+. |++|+.+.+++++.. +.+-.++++.. +++. ...++.++|++.+ +|. ..+.|
T Consensus 21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~-----i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~--~~igg 91 (103)
T 3nzn_A 21 RGKVIMYGLSTCVWCKKTKKLLTDLG-----VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE--KAIVG 91 (103)
T ss_dssp CSCEEEEECSSCHHHHHHHHHHHHHT-----BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT--EEEES
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcC-----CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC--EEEEc
Confidence 345677777 999999999998763 33444555431 2232 3458999998654 551 23557
Q ss_pred CCHHHHHHHHH
Q 005125 699 HQCELLEKSVK 709 (713)
Q Consensus 699 ~~~~~~~~~~~ 709 (713)
.++++|.++|+
T Consensus 92 ~~~~~l~~~L~ 102 (103)
T 3nzn_A 92 FKEKEIRESLG 102 (103)
T ss_dssp CCHHHHHHHTT
T ss_pred CCHHHHHHHhC
Confidence 79999998874
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0068 Score=49.30 Aligned_cols=66 Identities=14% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHhhcCCceEEEee-----c-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhh----HHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFC-----S-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYI----AKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~-----~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~----~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+... .+++++. . |++|+.+.++|.++. +.|..+|++..+.+ ....|+.++|++ |.+|
T Consensus 9 ~~~~~i~~~-~vvvf~~g~~~~~~C~~C~~~~~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i~g 80 (105)
T 2yan_A 9 RLKVLTNKA-SVMLFMKGNKQEAKCGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKAYSNWPTYPQL--YVKG 80 (105)
T ss_dssp HHHHHHTSS-SEEEEESBCSSSBCTTHHHHHHHHHHHHT-----CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETT
T ss_pred HHHHHhccC-CEEEEEecCCCCCCCccHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EECC
Confidence 445555433 4444443 4 999999999998763 56778888877764 445789999986 6788
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 81 ~~ig 84 (105)
T 2yan_A 81 ELVG 84 (105)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0044 Score=53.87 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=31.8
Q ss_pred HhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 670 PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 670 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
..++..+||+++|||++ .+|+ .++|+ +.+.|.++|++..
T Consensus 99 ~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~ 138 (147)
T 3gv1_A 99 TSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQ 138 (147)
T ss_dssp HHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTS
T ss_pred HHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHH
Confidence 35667789999999987 6786 47899 9999999998753
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0092 Score=45.80 Aligned_cols=66 Identities=14% Similarity=0.275 Sum_probs=45.5
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
+++|+. |+.|+.+.+++++. ++.+..+|++..+ ++....++.++|++ |.+|+.+. |. +.|.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l--~~~g~~i~---g~--~~i~~ 70 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEEE---SH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe---CH--HHHHH
Confidence 556665 99999999999875 2456667776543 35567899999987 45887653 33 55666
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
+++.
T Consensus 71 ~~~~ 74 (82)
T 1fov_A 71 LDAR 74 (82)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 6543
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0071 Score=56.59 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=63.7
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCC----------------------------cHhhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVED----------------------------HPYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~----------------------------~~~~~~~~ 676 (713)
..+++.|+ + |+.|....|.|.++.+++ .++.++.|.+|. ...++..|
T Consensus 53 k~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~y 132 (213)
T 2i81_A 53 KYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDY 132 (213)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHh
Confidence 45677788 5 999999999999998887 568888888764 23577788
Q ss_pred CCC-----cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GVS-----SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+|. .+|++.++ ++|+.+....|. +.++|.+.|+..
T Consensus 133 gv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 133 NVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp TCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 998 89977666 579888877553 578888888754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.15 Score=45.19 Aligned_cols=47 Identities=26% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
...|+++.|.+..+.. ++...|..||......|+++-|..+|.++-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3456666666655543 3455666666666666666666666665544
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0036 Score=51.83 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=43.0
Q ss_pred HHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC----cHh----hHHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED----HPY----IAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~----~~~----~~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+.... |++|+. |++|+.+.++|+++. +.+..+|++. .+. +....|+.++|++ |.+|
T Consensus 11 ~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g 81 (113)
T 3rhb_A 11 SIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLG-----VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCG 81 (113)
T ss_dssp HHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcC-----CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 3444444333 666766 999999999998753 3334455543 233 5555689999986 6799
Q ss_pred eEeee
Q 005125 691 SRVKE 695 (713)
Q Consensus 691 ~~~~~ 695 (713)
+.++.
T Consensus 82 ~~igG 86 (113)
T 3rhb_A 82 KHIGG 86 (113)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 87653
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0053 Score=55.77 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=58.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-----------cHhhHHH-cCCC--------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-----------HPYIAKS-EGVS-------------- 679 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-----------~~~~~~~-~~v~-------------- 679 (713)
..+++.|++ |++|....|.+.++.++++ ++.++.|.++. ...++.. +++.
T Consensus 39 k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 118 (180)
T 3kij_A 39 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEG 118 (180)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTC
T ss_pred CEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCccc
Confidence 456666888 9999999999999998884 38888887543 1233334 3321
Q ss_pred ------------ccc-----EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 680 ------------SIP-----AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 680 ------------~~P-----t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+| +|++-++|+.+..+.|. +++.|.+.|++.
T Consensus 119 ~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 168 (180)
T 3kij_A 119 EPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL 168 (180)
T ss_dssp CHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHH
T ss_pred cHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 145 57777899999999998 776666666543
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0075 Score=54.44 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=58.1
Q ss_pred CceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC----------------------cHhhHHHcCCCcc---
Q 005125 630 GMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED----------------------HPYIAKSEGVSSI--- 681 (713)
Q Consensus 630 ~~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~----------------------~~~~~~~~~v~~~--- 681 (713)
..+++.|++ |++|....|.|.++.++ .++.++.|++|. ...++..|+|...
T Consensus 45 k~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~ 123 (175)
T 1xvq_A 45 KSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGP 123 (175)
T ss_dssp SCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSST
T ss_pred CEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccc
Confidence 456777885 99999999999999888 789999998872 2357778888877
Q ss_pred ------cEEEEE-ECCeEeeeecC--C-CHHHHHHHHHh
Q 005125 682 ------PAFKIY-KNGSRVKEIPG--H-QCELLEKSVKL 710 (713)
Q Consensus 682 ------Pt~~~~-~~g~~~~~~~g--~-~~~~~~~~~~~ 710 (713)
|++.++ ++|+.+....| . +.+.+.++|+.
T Consensus 124 ~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 124 MAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp TTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred cCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 755544 58999888864 2 33345544443
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=54.02 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=32.6
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVE 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d 667 (713)
..+|+.|+. |+.|+.+.|.++++.+.++ ++.|..++++
T Consensus 26 ~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 26 KIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 456777888 9999999999999999997 5888888885
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.14 Score=52.28 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=86.4
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQID---PNNKEV 483 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 483 (713)
..+|..|+..|+|.+|...+.+.........+ .....+++.....+|...+++.++...|.+|.... +.++..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd----~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD----KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC----THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc----chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 46899999999999999998887653221100 01235677888899999999999999999987653 233433
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHcCCH
Q 005125 484 IKGVKMAKAMASARLRGNLLF-KASKYKEACYAYSEGLEHEAY-----NSVLLCNRAACRSKLGQY 543 (713)
Q Consensus 484 ~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~ 543 (713)
...+ ...-|..+. ..++|.+|..+|-++++-... ...+...++.|-...++.
T Consensus 179 ~a~i--------~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 179 QGAL--------DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHH--------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHH--------HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 3221 125788888 899999999999998754321 123445566666666663
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.011 Score=54.97 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=31.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVE 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d 667 (713)
..+++.||+ |++|+...|.|.++.+++. ++.++.|+++
T Consensus 48 k~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 48 KVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence 456667888 9999999999999998873 4888888875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.092 Score=60.11 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=87.1
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHc
Q 005125 269 AYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIR--------IDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 269 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~ 340 (713)
....|++++|.++.+ ..++...|..+|..+...++++.|+.+|.++-. ....+.+.+..++......
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345666666666543 335688999999999999999999999998621 2244556666777777777
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHccC
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS--APQVYALQAEALLRLQR 418 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~g~ 418 (713)
|++..|..+|.+.-. .-.....+...++|++|+...++ ..|.. .+.+....+..+...|+
T Consensus 737 ~~~~~A~~~~~~~g~---------------~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 737 GKFNLAFNAYWIAGD---------------IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp TCHHHHHHHHHHHTC---------------HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CchHHHHHHHHHcCC---------------HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccc
Confidence 777777766655322 12233456667788877766553 55665 55666666777777776
Q ss_pred HH
Q 005125 419 HQ 420 (713)
Q Consensus 419 ~~ 420 (713)
.+
T Consensus 799 ~~ 800 (814)
T 3mkq_A 799 NT 800 (814)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.021 Score=50.85 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------cHhhHHHcCCCc--
Q 005125 629 PGMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-----------------------HPYIAKSEGVSS-- 680 (713)
Q Consensus 629 ~~~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-----------------------~~~~~~~~~v~~-- 680 (713)
...+++.|++ |++|....|.+.++.++++++.++.|+.|. ...++..++|..
T Consensus 44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~ 123 (167)
T 2jsy_A 44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKE 123 (167)
T ss_dssp TSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTT
T ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcccc
Confidence 3456777776 999999999999999887778999998874 124666788876
Q ss_pred ----ccEEEEE-ECCeEeeeecCC------CHHHHHHHHHhh
Q 005125 681 ----IPAFKIY-KNGSRVKEIPGH------QCELLEKSVKLY 711 (713)
Q Consensus 681 ----~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~ 711 (713)
.|++.++ ++|+.+....|. +.++|.+.|++.
T Consensus 124 ~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 124 LRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred CCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 3876666 579988887653 347888888765
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.011 Score=53.93 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC-----------cHhhHHHc------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED-----------HPYIAKSE------------------ 676 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~-----------~~~~~~~~------------------ 676 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.|++|. ...++..+
T Consensus 50 k~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~ 129 (185)
T 2gs3_A 50 FVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAH 129 (185)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTBC
T ss_pred CEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChhhh
Confidence 456666888 9999999999999998874 48888887652 11122222
Q ss_pred -------------CCC-----cccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 677 -------------GVS-----SIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 677 -------------~v~-----~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++. .+|+..++ ++|+.+..+.|. ++++|.+.|++.
T Consensus 130 ~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 130 PLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp HHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred HHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence 222 24655555 689999999998 888888888764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.089 Score=54.14 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK----------------------ATYRSNKSAALIGLGRQIEALVECKEA 319 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 319 (713)
+...|......|+.++|+..+.+|+.+.... ..+...++..+...|++.+|+..+.++
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666789999999999999874211 123456677888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 320 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
+..+|-+..+|..+-.+|...|+..+|+..|+++..
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998766
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.015 Score=45.83 Aligned_cols=56 Identities=13% Similarity=0.329 Sum_probs=40.9
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh----hHHHcCCCcccEEEEEECCeEee
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY----IAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+++|+. |+.|+.+.+++++. ++.|..+|++..+. +...+++.++|++ |.+|+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~ 68 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG 68 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 4666666 99999999988764 35677788876654 4447789999964 56887654
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=95.88 E-value=0.026 Score=53.12 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=62.0
Q ss_pred CceEEEeec---CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc----------------------------HhhHHHc
Q 005125 630 GMAVVLFCS---KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH----------------------------PYIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~~---cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~----------------------------~~~~~~~ 676 (713)
..+++.|++ |++|....|.|.++.+++ .++.++.|.+|.. ..++..|
T Consensus 70 k~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~y 149 (222)
T 3ztl_A 70 KYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAY 149 (222)
T ss_dssp SEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHT
T ss_pred CeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHHc
Confidence 456777885 999999999999999887 4588888888742 2466778
Q ss_pred CCC------cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHh
Q 005125 677 GVS------SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKL 710 (713)
Q Consensus 677 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~ 710 (713)
+|. .+|+++++ ++|+.+....|. ..++|.+.|+.
T Consensus 150 gv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 150 GVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp TCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred CCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 888 89988777 579888877665 45667666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.033 Score=61.75 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 294 TYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
..+...+..+...|+++-|+.+.++|+...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355566777778889999999999999999998999999999999999999988776655
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.033 Score=50.10 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=27.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC--C-CcEEEEEeC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF--P-SVNFLKVEV 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p-~~~~~~v~~ 666 (713)
...|+.|+. |+.|..+.+.+.++.+++ + ++.++..+.
T Consensus 28 ~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 28 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 345666777 999999999988888776 3 566666554
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.15 Score=44.10 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=64.4
Q ss_pred HHHHHhhcCCceEEE-eec--CchhHHHHHHHHHHHHhC-CCcEEEEEeC--CCcHhhHHHcCCCc--ccEEEEEEC-Ce
Q 005125 621 RFRHFVTSPGMAVVL-FCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEV--EDHPYIAKSEGVSS--IPAFKIYKN-GS 691 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~-f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~--d~~~~~~~~~~v~~--~Pt~~~~~~-g~ 691 (713)
.+.......-...++ |.. -.....+.+.|.++++.+ +.+.|+.||. +....+...+|+.. +|++.++.. +.
T Consensus 23 n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~ 102 (147)
T 3bj5_A 23 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE 102 (147)
T ss_dssp THHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSS
T ss_pred cHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEecccc
Confidence 344444333333333 443 234667889999999998 5699999999 67777889999986 999998875 22
Q ss_pred -Eeeeec-CC-CHHHHHHHHHhhh
Q 005125 692 -RVKEIP-GH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 -~~~~~~-g~-~~~~~~~~~~~~~ 712 (713)
..-... +. +++.|.+|++.+.
T Consensus 103 ~~Ky~~~~~~~t~~~i~~Fv~d~l 126 (147)
T 3bj5_A 103 MTKYKPESEELTAERITEFCHRFL 126 (147)
T ss_dssp CEEECCSCCCCCHHHHHHHHHHHH
T ss_pred cccCCCCcccCCHHHHHHHHHHHH
Confidence 222333 45 8999999999874
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.058 Score=47.53 Aligned_cols=67 Identities=7% Similarity=0.078 Sum_probs=51.1
Q ss_pred ceEEEee-c--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCC---------------------cHhhHHHcCCCccc--
Q 005125 631 MAVVLFC-S--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVED---------------------HPYIAKSEGVSSIP-- 682 (713)
Q Consensus 631 ~~vv~f~-~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~---------------------~~~~~~~~~v~~~P-- 682 (713)
.+++.|+ + |+.|....|.|.++.+++. + .++-|..|. ...++..|+|...|
T Consensus 37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~ 115 (159)
T 2a4v_A 37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS 115 (159)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence 3556665 4 9999999999999887763 3 666676653 22466778888888
Q ss_pred -----EEEEEECCeEeeeecCC
Q 005125 683 -----AFKIYKNGSRVKEIPGH 699 (713)
Q Consensus 683 -----t~~~~~~g~~~~~~~g~ 699 (713)
+|++ ++|..+....|.
T Consensus 116 g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 116 GSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp CBCCEEEEE-ETTEEEEEEESC
T ss_pred CccceEEEE-cCCEEEEEEccC
Confidence 7888 999999999887
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.011 Score=50.17 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=45.1
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHH-HHHHHHHHHhCCCcEEEEEeCCCc-------HhhHHHcCCCcccEEEEEEC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQV-LQLMEQVCKRFPSVNFLKVEVEDH-------PYIAKSEGVSSIPAFKIYKN 689 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~-~~~~~~l~~~~p~~~~~~v~~d~~-------~~~~~~~~v~~~Pt~~~~~~ 689 (713)
..+...+... .|++|+. |+.|..+ .++|+++... .+.+..+|++.. ..+....|+.++|++ |.+
T Consensus 28 ~~v~~~i~~~--~Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi~ 101 (129)
T 3ctg_A 28 AHVKDLIGQK--EVFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YIN 101 (129)
T ss_dssp HHHHHHHHHS--SEEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHcCC--CEEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EEC
Confidence 3455555433 3666666 9999999 8888765421 144445555433 357778899999984 788
Q ss_pred CeEee
Q 005125 690 GSRVK 694 (713)
Q Consensus 690 g~~~~ 694 (713)
|+.++
T Consensus 102 g~~ig 106 (129)
T 3ctg_A 102 GKHIG 106 (129)
T ss_dssp TEEEE
T ss_pred CEEEc
Confidence 88764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.21 Score=44.18 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHH
Q 005125 374 KCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVR 453 (713)
Q Consensus 374 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 453 (713)
+.....+.|+++.|.+..+.. + ....|..+|...+..|+++-|+.+|.++-.. -.+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------~~L 66 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----N-DSITWERLIQEALAQGNASLAEMIYQTQHSF------------------DKL 66 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------HHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------HHH
Confidence 345566788999888887654 2 2478888999999999999999999887432 224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 454 AQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 454 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
..+|...|+.+.-...-+.+.... ++. ....+++.+|+++++++.|.+
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~~g-~~n----------------~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQTRE-DFG----------------SMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT-CHH----------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHCc-cHH----------------HHHHHHHHcCCHHHHHHHHHH
Confidence 566667777766554444443322 211 133456677888888777654
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.029 Score=50.26 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=58.8
Q ss_pred CceEEEeec--Cc-hhHHHHHHHHHHHHhCC----CcEEEEEeCCC---cH-------------------------hhHH
Q 005125 630 GMAVVLFCS--KA-EHKQVLQLMEQVCKRFP----SVNFLKVEVED---HP-------------------------YIAK 674 (713)
Q Consensus 630 ~~~vv~f~~--cg-~c~~~~~~~~~l~~~~p----~~~~~~v~~d~---~~-------------------------~~~~ 674 (713)
..+++.|++ |+ +|....+.+.++.+.++ ++.++.|++|. .+ .+..
T Consensus 34 k~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (174)
T 1xzo_A 34 EVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIE 113 (174)
T ss_dssp CCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHH
T ss_pred CEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHHH
Confidence 456777888 99 99999999998887662 38888888762 11 1111
Q ss_pred H----------------cCCCcccEEEEE-ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 675 S----------------EGVSSIPAFKIY-KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 675 ~----------------~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
. +++..+|++.++ ++|+.+..+.|. +.++|.+.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 114 EFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS 171 (174)
T ss_dssp HHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred HHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 1 235667865444 689999999987 3789999988753
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.07 Score=47.16 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=59.2
Q ss_pred CceEEEeec---CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc---------------------HhhHHHcCCCc---
Q 005125 630 GMAVVLFCS---KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH---------------------PYIAKSEGVSS--- 680 (713)
Q Consensus 630 ~~~vv~f~~---cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~---------------------~~~~~~~~v~~--- 680 (713)
..+++.|+. |+.|....|.+.++.+++ .++.++-|..|.. ..++..+++..
T Consensus 36 k~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~ 115 (163)
T 3gkn_A 36 HWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKN 115 (163)
T ss_dssp SCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccccc
Confidence 356677775 999999999999998776 3588888887732 24566677776
Q ss_pred ---------ccEEEEE-ECCeEeeeecCC----CHHHHHHHHHhh
Q 005125 681 ---------IPAFKIY-KNGSRVKEIPGH----QCELLEKSVKLY 711 (713)
Q Consensus 681 ---------~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~~~~ 711 (713)
+|++.++ ++|..+....|. ..++|.+.|++.
T Consensus 116 ~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 116 MYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp ETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred cccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 8988777 478888777665 346666666654
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.037 Score=43.06 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=45.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc----HhhHHHcCC-----CcccEEEEEECCeEeeeecCC
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH----PYIAKSEGV-----SSIPAFKIYKNGSRVKEIPGH 699 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~----~~~~~~~~v-----~~~Pt~~~~~~g~~~~~~~g~ 699 (713)
..+++|+. |+.|+.+.+++.+... ...+..+|.+.. +++....|. .++|++ |.+|+.+. |.
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i--~i~g~~i~---g~ 75 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQI--FIDDEHIG---GF 75 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEE--EETTEEEE---SH
T ss_pred eEEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEE--EECCEEEe---Ch
Confidence 45677776 9999999998876532 245555555544 356666777 899987 45887654 44
Q ss_pred CHHHHHHHHH
Q 005125 700 QCELLEKSVK 709 (713)
Q Consensus 700 ~~~~~~~~~~ 709 (713)
+.|.++++
T Consensus 76 --~~i~~~~~ 83 (89)
T 3msz_A 76 --TELKANAD 83 (89)
T ss_dssp --HHHHHTHH
T ss_pred --HHHHHHHH
Confidence 44555444
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.094 Score=49.41 Aligned_cols=99 Identities=9% Similarity=0.209 Sum_probs=74.5
Q ss_pred cccccceeecchhHHHHHhhcCCceEEEeecCchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 608 KFGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 608 ~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+....+.+.+++..++......++-|++ ..|....+.|.+++..++++.|..+. .+.++..++|.. |++.+|
T Consensus 6 ~~~~~~~~l~s~~~~~~~l~~~~v~vVgff~-~~~~~~~~~f~~~A~~l~~~~F~~t~---~~~v~~~~~v~~-p~i~lf 80 (227)
T 4f9z_D 6 GAAQEPTWLTDVPAAMEFIAATEVAVIGFFQ-DLEIPAVPILHSMVQKFPGVSFGIST---DSEVLTHYNITG-NTICLF 80 (227)
T ss_dssp ---CCCEECCSHHHHHHHHHTSSEEEEEECS-CSCSTHHHHHHHHTTTCTTSEEEEEC---CHHHHHHTTCCS-SEEEEE
T ss_pred CCcCCCeeeCCHHHHHHHHhcCCeEEEEEec-CCCchhHHHHHHHHHhCCCceEEEEC---CHHHHHHcCCCC-CeEEEE
Confidence 3455677778888898888777766766766 24778889999999888788888764 578889999987 999999
Q ss_pred ECCe-EeeeecC----C-CHHHHHHHHHhh
Q 005125 688 KNGS-RVKEIPG----H-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g~-~~~~~~g----~-~~~~~~~~~~~~ 711 (713)
+.+. ....+.| . +.+.|.+||...
T Consensus 81 k~~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 110 (227)
T 4f9z_D 81 RLVDNEQLNLEDEDIESIDATKLSRFIEIN 110 (227)
T ss_dssp ETTTTEEEEECHHHHHTCCHHHHHHHHHHH
T ss_pred EecCcccccccccccCCCCHHHHHHHHHHh
Confidence 9742 3334553 4 999999999875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.42 Score=49.03 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=93.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH--HHHH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNK------EVIKG--VKMA--KAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~--~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
.|......|+.+.|...+++|+.+..... ..|.. -..+ ....++..++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445567899999999999998743221 11111 1111 12445557888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHHHhCCCCHH
Q 005125 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV-------MPSYSKARLEAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~~A~~~~~~al~~~p~~~~ 584 (713)
+|-+-.+|..+-.+|...|+..+|+..|+++.+. +|.. +-.+.|+.++.-+|....
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~------~l~~l~~~il~~~~~~~~ 263 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP------TLRALNERILRQQPLDAK 263 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH------HHHHHHHHHHTTCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999887542 4542 344566777777776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.14 Score=56.90 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHH--Hc-cCHHHHHHHhhccccC--------ChhhHHhhhcccCcHHHHHH
Q 005125 384 WNDLLKETQNVISFGADSAPQVYALQAEALL--RL-QRHQEAHDSYNKSPKF--------CLEYYTKLFGLAGGAYLLIV 452 (713)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~ 452 (713)
++.|+..+++....+|... +++..+.+.. .. .+--+|+..+.++++. .+.+.....-......++..
T Consensus 265 ~~~a~~~le~L~~~~p~~~--~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHD--IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 5778889999888888763 3332222222 22 2345677777666532 11110000000112446777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005125 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG 519 (713)
Q Consensus 453 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 519 (713)
.+..+...|+++-|+++.++|+...|..-..|. .|+.+|..+|+|+.|+-.+..+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~------------~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWY------------NLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHH------------HHHHHHHHhccHHHHHHHHhcC
Confidence 788888999999999999999999999999998 6999999999999999888765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=1.3 Score=46.29 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC
Q 005125 404 QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ---IDPNN 480 (713)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~ 480 (713)
.+...++.+|...|++.+|...+.....-.-... ......+++.....+|...+++.+|...+.++.. ..+.+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~----~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSM----EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 5667789999999999999999988642100000 0012356788889999999999999999998743 24444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
+.... ..+...|.++...++|.+|..+|..++..
T Consensus 214 ~~lk~--------~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKL--------EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44332 12236899999999999999999988754
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.12 Score=47.16 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.6
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV 666 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~ 666 (713)
..|+.|+. |+.|..+.+.+.++.+.++ .+.|..+++
T Consensus 27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred eEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 35666777 9999999999999998886 467766655
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.13 Score=54.39 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 339 (713)
.+..+|+.......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5667888888888888888888888888888888888888888888888888888888888776678888888776654
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.08 Score=48.47 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEV 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~ 666 (713)
...|+.|+. |+.|..+.|.+.++.++++ .+.|..+++
T Consensus 23 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 62 (195)
T 2znm_A 23 KIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV 62 (195)
T ss_dssp SEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence 445666777 9999999999999998886 466666664
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.074 Score=50.64 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=58.9
Q ss_pred Eeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCc---------------------------HhhHHHcCCC----
Q 005125 635 LFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDH---------------------------PYIAKSEGVS---- 679 (713)
Q Consensus 635 ~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~---------------------------~~~~~~~~v~---- 679 (713)
.|++ |+.|....+.|.++.+++. ++.++.|.+|.. ..++..|||.
T Consensus 40 ~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~ 119 (249)
T 3a2v_A 40 SHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES 119 (249)
T ss_dssp CCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTC
T ss_pred EEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccC
Confidence 3566 9999999999999887773 688888888752 2467778887
Q ss_pred ---cccEEEEE-ECCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 680 ---SIPAFKIY-KNGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 680 ---~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
++|++.++ .+|..+..+.|. +.++|.+.|+..
T Consensus 120 g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 120 ATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp SSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 89976666 478887776543 689999888764
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.062 Score=44.24 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=43.5
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-------HhhHHHcCCCcccEEEEEECC
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-------PYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-------~~~~~~~~v~~~Pt~~~~~~g 690 (713)
..+...+.. ..+++|+. |+.|+.+.++|.++. +.+..+|++.. ..+....|..++|++ |.+|
T Consensus 8 ~~~~~~i~~--~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~v--fi~g 78 (114)
T 3h8q_A 8 RHLVGLIER--SRVVIFSKSYCPHSTRVKELFSSLG-----VECNVLELDQVDDGARVQEVLSEITNQKTVPNI--FVNK 78 (114)
T ss_dssp HHHHHHHHH--CSEEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCccCEE--EECC
Confidence 345555533 34555666 999999999998752 34555666532 235566788999976 5588
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 79 ~~ig 82 (114)
T 3h8q_A 79 VHVG 82 (114)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7665
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.26 Score=46.58 Aligned_cols=61 Identities=25% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHR 328 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 328 (713)
.+++.|++++|+......++.+|.++.....+...+.-.|+|+.|.+.++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567788888888888888888888888888888888888888888888888888887643
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.076 Score=43.28 Aligned_cols=66 Identities=12% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHhhcCCceEEEee-----c-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhh----HHHcCCCcccEEEEEECC
Q 005125 621 RFRHFVTSPGMAVVLFC-----S-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYI----AKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 621 ~~~~~l~~~~~~vv~f~-----~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~----~~~~~v~~~Pt~~~~~~g 690 (713)
.+...+.. ..++++.. . |+.|+.+.++|... ++.|..+|++..+.+ ....|..++|. +|.+|
T Consensus 7 ~~~~~i~~-~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~--ifi~g 78 (109)
T 1wik_A 7 GLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQ--LYVRG 78 (109)
T ss_dssp CHHHHHTT-SSEEEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCE--EECSS
T ss_pred HHHHHhcc-CCEEEEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCE--EEECC
Confidence 34455543 34455555 4 99999999998764 467888999887654 44557889996 57888
Q ss_pred eEee
Q 005125 691 SRVK 694 (713)
Q Consensus 691 ~~~~ 694 (713)
+.++
T Consensus 79 ~~ig 82 (109)
T 1wik_A 79 DLVG 82 (109)
T ss_dssp SEEE
T ss_pred EEEc
Confidence 7654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=1 Score=42.62 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 302 ALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 302 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
.+++.|+.++|+..+...++.+|.+......|..+++-.|+++.|...++.+.+ ++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCchhh
Confidence 456778999999999999999999999999999999999999999999999999 998874
|
| >2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.29 Score=46.66 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=54.9
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc------------------HhhHHHcCCCcc--cEEEEEE
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH------------------PYIAKSEGVSSI--PAFKIYK 688 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~------------------~~~~~~~~v~~~--Pt~~~~~ 688 (713)
..|.+|+. |+.|..+..++.++...+ ++..+..++++. +.++..+|.+++ |. +|.
T Consensus 44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~-~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPq--I~I 120 (270)
T 2axo_A 44 GVVELFTSQGCASCPPADEALRKMIQKG-DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQ--AIL 120 (270)
T ss_dssp CEEEEEECTTCTTCHHHHHHHHHHHHHT-SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSE--EEE
T ss_pred cEEEEEeCCCCCChHHHHHHHHHhhccC-CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCE--EEE
Confidence 56777888 999999999999998775 454333333322 246778899999 97 455
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+. .+.|++++.|.+.|.+.
T Consensus 121 ng~~--~v~G~d~~~l~~~l~~~ 141 (270)
T 2axo_A 121 NGRD--HVKGADVRGIYDRLDAF 141 (270)
T ss_dssp TTTE--EEETTCHHHHHHHHHHH
T ss_pred CCEE--eecCCCHHHHHHHHHHh
Confidence 7764 36788889999888653
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.061 Score=48.67 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEe
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVE 665 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~ 665 (713)
..+|+.|.. |+.|..+.+.+.++.+++++ +.+..+.
T Consensus 22 ~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~ 60 (184)
T 4dvc_A 22 SPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNH 60 (184)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEe
Confidence 456777777 99999999999999999864 5554443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.32 Score=51.30 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.+..+|.+......++.|..+|.+|+.+.|++...++ .+|.+....|+.-+|+-+|.+++....-.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~n------------qLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN------------QLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHH------------HHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 6677899999999999999999999999999999998 6999999999999999999999988777899
Q ss_pred HHHHHHHHHHHc
Q 005125 529 LLCNRAACRSKL 540 (713)
Q Consensus 529 ~~~~la~~~~~~ 540 (713)
+..|+...+.+.
T Consensus 222 a~~nL~~~f~~~ 233 (497)
T 1ya0_A 222 ASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=7.7 Score=40.33 Aligned_cols=169 Identities=8% Similarity=-0.023 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HH-HcCCHHHHHHHHHHHHHh----CCC-----
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAA---LI-GLGRQIEALVECKEAIRI----DPC----- 325 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~-~~g~~~~A~~~~~~al~~----~p~----- 325 (713)
..++..+...++..++|+...+++.-..........+...+... +. .....+. ......+.. ..+
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHH
Confidence 44577778888899999888777765544433333222222211 11 1121111 111222221 111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH---cCCC
Q 005125 326 --YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVIS---FGAD 400 (713)
Q Consensus 326 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~ 400 (713)
.......|+.+|...|++.+|...+.......... ......+..++.....+...++|.+|...+.++.. ..+.
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 24556788999999999999999888876422111 11223344455555566666666666665555421 1111
Q ss_pred C---hHHHHHHHHHHHHHccCHHHHHHHhhccc
Q 005125 401 S---APQVYALQAEALLRLQRHQEAHDSYNKSP 430 (713)
Q Consensus 401 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 430 (713)
. ....+...|.++...++|.+|-.+|..++
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 11334444555555555555555555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.42 Score=49.78 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINSS---KATYRSNKSAALIGLGRQIEALVECKEAIRIDP--CY----HRAH 330 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 330 (713)
.++..+|..|+..|++++|+++|.++...... ..+.+.....++...++|..+..++.++..+.. .+ ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35789999999999999999999999876432 367888899999999999999999999876521 12 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 331 HRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 331 ~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
...|.++...++|.+|..+|..+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 5667788889999999999988876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.33 E-value=2.3 Score=48.40 Aligned_cols=97 Identities=7% Similarity=-0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQ-----IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLE 521 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 521 (713)
...+..+-..|.+.|+.++|...|.+..+ ..|+ ...|+ .+-..|.+.|++++|.+.|++..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYN------------tLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYN------------AVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHH------------HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHH------------HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34678888999999999999999977543 2343 44555 588899999999999999999886
Q ss_pred c--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 005125 522 H--EAYNSVLLCNRAACRSKLGQY-EKAVEDCTAALIVM 557 (713)
Q Consensus 522 ~--~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~ 557 (713)
. .| +...|..+-.++.+.|+. ++|.+.+++..+..
T Consensus 194 ~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 194 AGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp TTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 5 45 788899899999999985 78999999998864
|
| >3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.13 Score=43.14 Aligned_cols=71 Identities=17% Similarity=0.378 Sum_probs=44.3
Q ss_pred hHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-H----hhHHHcCCCcccEEEEEECCeE
Q 005125 620 ERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-P----YIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-~----~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
.+|..++... .|++|.. |+.|..+..+|.+.....+....+.||.+.. + .+....|..++|.+ |.+|+.
T Consensus 5 ~~~~~ii~~~--~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~I--fI~G~~ 80 (127)
T 3l4n_A 5 KEYSLILDLS--PIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL--LVNGVS 80 (127)
T ss_dssp HHHHHHHTSC--SEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred HHHHHHHccC--CEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceE--EECCEE
Confidence 4566665443 3666666 9999999999987421123455556665432 2 23344588899975 678876
Q ss_pred ee
Q 005125 693 VK 694 (713)
Q Consensus 693 ~~ 694 (713)
|+
T Consensus 81 IG 82 (127)
T 3l4n_A 81 RG 82 (127)
T ss_dssp CC
T ss_pred Ec
Confidence 53
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.24 Score=46.23 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred CceEEEee-c--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCcH----------------------------hhHHHc
Q 005125 630 GMAVVLFC-S--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDHP----------------------------YIAKSE 676 (713)
Q Consensus 630 ~~~vv~f~-~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~~----------------------------~~~~~~ 676 (713)
..+++.|+ + |+.|....|.|.++.+++ .++.++-|.+|... .++..|
T Consensus 57 k~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~y 136 (221)
T 2c0d_A 57 KYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNY 136 (221)
T ss_dssp CEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHc
Confidence 45677788 6 999999999999988776 46888888776421 244556
Q ss_pred CC-----CcccEEEEEE-CCeEeeeecCC-----CHHHHHHHHHhh
Q 005125 677 GV-----SSIPAFKIYK-NGSRVKEIPGH-----QCELLEKSVKLY 711 (713)
Q Consensus 677 ~v-----~~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~ 711 (713)
+| ..+|+++++. +|..+....|. +.++|.+.|+..
T Consensus 137 gv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 137 NVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp TCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 77 3679887774 68888776552 678888888754
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.34 Score=43.05 Aligned_cols=84 Identities=5% Similarity=-0.067 Sum_probs=57.4
Q ss_pred CCceEEEeec--Cc-hhHHHHHHHHHHHHhC----CCcEEEEEeCCC--c-----------------------------H
Q 005125 629 PGMAVVLFCS--KA-EHKQVLQLMEQVCKRF----PSVNFLKVEVED--H-----------------------------P 670 (713)
Q Consensus 629 ~~~~vv~f~~--cg-~c~~~~~~~~~l~~~~----p~~~~~~v~~d~--~-----------------------------~ 670 (713)
...+++.|+. |+ .|....+.+.++.+++ .++.++.|.+|. . .
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 3456666777 96 6999999999988776 347777776651 1 1
Q ss_pred hhHHHcCC---------CcccEEEEE-ECCeEeeeecCC--CHHHHHHHHHhhh
Q 005125 671 YIAKSEGV---------SSIPAFKIY-KNGSRVKEIPGH--QCELLEKSVKLYS 712 (713)
Q Consensus 671 ~~~~~~~v---------~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~~~~~ 712 (713)
.++..+|+ ...|++.++ ++|..+..+.|. ++++|.+.|++..
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~ 161 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLAR 161 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHT
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence 23333332 334655555 478888888887 8999999998763
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=93.02 E-value=0.48 Score=47.87 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=71.4
Q ss_pred cccceeecchhHHHHHhh-cCCceEEEeecCchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 610 GSNLVFVSSNERFRHFVT-SPGMAVVLFCSKAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~-~~~~~vv~f~~cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
+..+..+.+.+.+..++. .....++.|+.- .|....+.|.+++..+ +.+.|+.+. .+.++..++|. .|++.+|
T Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~-~~~~~~~~~~~~A~~~~~~~~f~~~~---~~~~~~~~~v~-~p~i~~~ 196 (350)
T 1sji_A 122 EDPVEIINSKLEVQAFERIEDQIKLIGFFKS-EESEYYKAFEEAAEHFQPYIKFFATF---DKGVAKKLSLK-MNEVDFY 196 (350)
T ss_dssp SCSEEECCSHHHHHHHHHCCSSCEEEEECSC-TTSHHHHHHHHHHHHTTTTSEEEEEC---CHHHHHHHTCC-TTCEEEE
T ss_pred CCcceeccchHHHHHHhccCCCcEEEEEECC-CCcHHHHHHHHHHHhhccCcEEEEEC---CHHHHHHcCCC-CCcEEEE
Confidence 345566666677887776 556666667662 2445567888888887 778898874 46789999999 9999999
Q ss_pred ECC-eEeeeecCC--CHHHHHHHHHhh
Q 005125 688 KNG-SRVKEIPGH--QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g-~~~~~~~g~--~~~~~~~~~~~~ 711 (713)
+.+ +....+.|. +.+.|.+||...
T Consensus 197 ~~~~~~~~~y~g~~~~~~~l~~fi~~~ 223 (350)
T 1sji_A 197 EPFMDEPIAIPDKPYTEEELVEFVKEH 223 (350)
T ss_dssp CTTCSSCEECSSSSCCHHHHHHHHHHH
T ss_pred eCCCCCceecCCCCCCHHHHHHHHHHc
Confidence 863 333457774 899999999875
|
| >2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.67 Score=44.24 Aligned_cols=98 Identities=8% Similarity=0.159 Sum_probs=71.5
Q ss_pred ccccceeecchhHHHHHhhcCCceEEEeecCchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEE
Q 005125 609 FGSNLVFVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIY 687 (713)
Q Consensus 609 ~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~ 687 (713)
.|..+..+.+.+.+..++......++.|+.- .|......|.+++..+ +++.|+.+. .+.++..+++.. |++++|
T Consensus 4 ~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~-~~~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~~f 78 (252)
T 2h8l_A 4 GSPASVPLRTEEEFKKFISDKDASIVGFFDD-SFSEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGIILF 78 (252)
T ss_dssp --CCEEECCSHHHHHHHHTSSSCEEEEEESC-TTSHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEEEE
T ss_pred CCCCceeecCHHHHHHHhhcCCeEEEEEECC-CCChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEEEE
Confidence 3566777877788888887766666666662 3555667788888887 788888884 367889999996 999999
Q ss_pred ECC-------eEeeee-cCC-CHHHHHHHHHhh
Q 005125 688 KNG-------SRVKEI-PGH-QCELLEKSVKLY 711 (713)
Q Consensus 688 ~~g-------~~~~~~-~g~-~~~~~~~~~~~~ 711 (713)
+.+ +....+ .|. +.+.|.+||...
T Consensus 79 k~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~ 111 (252)
T 2h8l_A 79 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN 111 (252)
T ss_dssp CCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH
T ss_pred cchhhcccccccccccCCCCcCHHHHHHHHHhc
Confidence 842 222345 676 999999999875
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.11 Score=54.27 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 400 DSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
.....+++.+-..|+..+.+++|..+..++.-....... ...+..++.+|.++.-.++|.+|.+++..|+...|.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn-----~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSS-----SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCH-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 333477888899999999999999999998521111001 123567889999999999999999999999998876
Q ss_pred CH
Q 005125 480 NK 481 (713)
Q Consensus 480 ~~ 481 (713)
+.
T Consensus 303 ~~ 304 (523)
T 4b4t_S 303 NS 304 (523)
T ss_dssp SS
T ss_pred ch
Confidence 54
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.33 E-value=1.5 Score=49.83 Aligned_cols=101 Identities=9% Similarity=-0.143 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAI----NSSKATYRSNKSAALIGLGRQIEALVECKEAIRI--DPCYHRAHHRL 333 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 333 (713)
..|..+-..|.+.|+.++|..+|.+..+. -.-+...|..+-..|.+.|+.++|.+.|+++.+. .| +...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 36888999999999999999999876532 2335778999999999999999999999999875 45 47788888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhhh-hcccc
Q 005125 334 AMLYFRLGE-AEKAVSHYKKSSSL-ANQKD 361 (713)
Q Consensus 334 a~~~~~~g~-~~~A~~~~~~al~~-~~p~~ 361 (713)
-.++.+.|+ .++|.+.|+++... +.|+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 889999998 57889999988772 34543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.18 E-value=1.1 Score=53.30 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=78.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAI-----------------------NSSKATYRSNKSAALIGLGRQI 310 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~g~~~ 310 (713)
..+.++..-+.+|.++...|++++|..+|+++-.- ....+.+|.....++.+.+.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 34677778899999999999999999999887321 0112356777888899999999
Q ss_pred HHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 311 EALVECKEAIRIDPC-YH----RAHHRLAMLYFRLGEAEKAVSHYKKS 353 (713)
Q Consensus 311 ~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a 353 (713)
.+++..+.|++..+. +. ..|.++-..+...|+|++|...+...
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 999999999987543 32 26778888899999999998777544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 713 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-17 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-16 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-11 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 9e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-10 | |
| d2trcp_ | 217 | c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [ | 1e-10 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-09 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.002 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 4e-04 | |
| d1syra_ | 103 | c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas | 2e-08 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-07 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 2e-04 | |
| d2ifqa1 | 105 | c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien | 1e-07 | |
| d1gh2a_ | 107 | c.47.1.1 (A:) Thioredoxin-like protein, N-terminal | 2e-07 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-07 | |
| d1ti3a_ | 113 | c.47.1.1 (A:) Thioredoxin {European aspen (Populus | 4e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-07 | |
| d1nw2a_ | 105 | c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc | 8e-07 | |
| d1ep7a_ | 112 | c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt | 2e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 8e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-05 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.001 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.001 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-05 | |
| d1woua_ | 119 | c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi | 4e-04 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.001 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.5 bits (223), Expect = 6e-20
Identities = 48/346 (13%), Positives = 94/346 (27%), Gaps = 42/346 (12%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+ + Y FE A + S+ R + AI+ +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRW 384
A+ L +Y G+ ++A+ HY L + +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHY------------------RHALRLKPDFIDGYIN 106
Query: 385 NDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444
+ + + + + + Y +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF 504
A V+ A G A+ + A +DPN + GN+L
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY------------INLGNVLK 214
Query: 505 KASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA- 563
+A + A AY L ++V+ N A + G + A++ A+ + P + A
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 564 -----------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKK 598
+ A Y +R P + + L + +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.0 bits (201), Expect = 3e-17
Identities = 54/278 (19%), Positives = 93/278 (33%), Gaps = 30/278 (10%)
Query: 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323
+GN R E+A A Y +AI + A SN G A+ ++A+ +D
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR 383
P + A+ L + ++AV+ Y ++ SL+ + H E
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-------HGNLACVYYEQGL 252
Query: 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443
+ + + I P Y A AL EA D YN + + C + L L
Sbjct: 253 IDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL 503
A + G E+AV+ + A ++ P ++L
Sbjct: 312 ----------ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN------------LASVL 349
Query: 504 FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLG 541
+ K +EA Y E + + N ++
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (197), Expect = 1e-16
Identities = 62/398 (15%), Positives = 119/398 (29%), Gaps = 66/398 (16%)
Query: 244 SGEFPQCISSLNKL------DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRS 297
+G+F +L + L + + + R + + AI N A S
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 298 NKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357
N G+ EA+ + A+R+ P + + LA G+ E AV Y +
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 358 NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA--------------- 402
+++ + + ++ N ++
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 403 -----------PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLI 451
Y L + A +Y ++ + L
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL-------- 243
Query: 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKE 511
A VY G + A+ T + A ++ P+ + N L + E
Sbjct: 244 --ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN------------LANALKEKGSVAE 289
Query: 512 ACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKA-------- 563
A Y+ L ++ L N A + + G E+AV AL V P ++ A
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Query: 564 ----RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLK 597
+L+ A+ Y+ IR P + + +++
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.6 bits (179), Expect = 2e-14
Identities = 38/245 (15%), Positives = 78/245 (31%), Gaps = 9/245 (3%)
Query: 200 NHCPNATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDP 259
+ K ++ P S LG + + + +L+
Sbjct: 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVTLDPNFL 203
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ +GN F+ A+A Y RA++++ + A N + G A+ + A
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
I + P + A+ LA G +A Y + L N R
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA-------DSLNNLANIKR 316
Query: 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTK 439
E + ++ + + + A ++ A L + + QEA Y ++ + +
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
Query: 440 LFGLA 444
+
Sbjct: 376 YSNMG 380
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-05
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509
+ A AG FE A + + +P+N V+ L ++ F+ +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVL------------LLLSSIHFQCRRL 49
Query: 510 KEACYAYSEGLEHEAYNSVLLCNRAAC 536
+ + + ++ + N
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNV 76
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.4 bits (171), Expect = 2e-14
Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ELK GN + ++ +A A Y RAI N A Y +N++ + + + +AL +C+ A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
+ +D +AH L + ++A+++ +++ SLA ++ + + + L R
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL------R 118
Query: 380 ELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF 432
K+ E + + + + AE L+ Q H+ +
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ +GN LF KY EA Y + +V NRA C K+ Q E+A+ DC AL +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 557 MPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGEDV 604
KA + AI + + + +++ K++ +
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127
Query: 605 KDMK 608
+ +
Sbjct: 128 IEER 131
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 16/154 (10%), Positives = 43/154 (27%), Gaps = 12/154 (7%)
Query: 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506
A L + ++ +A A +P +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ----------- 52
Query: 507 SKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLE 566
+ ++A LE + + C+ ++ Y++A+ + A + +
Sbjct: 53 -QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
Query: 567 AAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
+ ++ + E R E+++ R
Sbjct: 112 DIPSALRIAKKKRWNSIEERRIHQESELHSYLTR 145
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 2e-11
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
+ K +GN+AY K F+ AL YD+A ++ + TY +N++A G + C++A
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 320 IRIDP-------CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
I + +A+ R+ YF+ + + A+ Y KS + D+ K
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 5e-06
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 20/129 (15%)
Query: 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549
K + GN +K + A Y + E + N + N+AA + G Y K E
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 550 CTAALIVMPSYSKA-------------------RLEAAIQDYEMLIREIPGNEEVGRALF 590
C A+ V + + + AI Y + +V +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AEHRTPDVLKKCQ 119
Query: 591 EAQVQLKKQ 599
+A+ LK+Q
Sbjct: 120 QAEKILKEQ 128
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 5e-11
Identities = 45/301 (14%), Positives = 85/301 (28%), Gaps = 33/301 (10%)
Query: 280 ALYDRAIAINSSKATYRSNKSA-----ALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334
A YD+ + R + + G A++ + A++ DP + A L
Sbjct: 2 ATYDKGYQFEE-ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG 60
Query: 335 MLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNV 394
+ A+S ++ L A + + + + D L+ T
Sbjct: 61 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 120
Query: 395 ISFGADSA-------PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGA 447
+ +LL E + + + +
Sbjct: 121 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP-------- 172
Query: 448 YLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKAS 507
+ ++ +G ++ AV A + PN+ G L +
Sbjct: 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------------YLLWNKLGATLANGN 220
Query: 508 KYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEA 567
+ +EA AY LE + N LG + +AVE AL + R E
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280
Query: 568 A 568
Sbjct: 281 G 281
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323
+G N + E+A+A Y RA+ + R N + I LG EA+ EA+ +
Sbjct: 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 270
Query: 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR 383
+ E S + + S+ Q D A A + L+ L +
Sbjct: 271 RKSRGPRGEGGAMS------ENIWSTLRLALSMLGQSDAYGA-ADARDLSTLLTMFGLPQ 323
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.002
Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 35/181 (19%)
Query: 264 FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323
+G ++ A+ + A+++ + + A L + EA+ + A+ +
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236
Query: 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKR 383
P Y R+ + L + LG +AV H+ ++ ++ Q+ +++
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSE-------NI 287
Query: 384 WNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443
W+ L AL L + + + L +FGL
Sbjct: 288 WSTL----------------------RLALSMLGQSDAYGAADARD----LSTLLTMFGL 321
Query: 444 A 444
Sbjct: 322 P 322
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.2 bits (148), Expect = 6e-11
Identities = 18/96 (18%), Positives = 35/96 (36%)
Query: 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPC 325
A ++ + + AL L AI + A+ RS+ L G A + ++I++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361
Y +L L + + L ++
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEE 98
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 48.5 bits (115), Expect = 1e-06
Identities = 14/157 (8%), Positives = 46/157 (29%), Gaps = 17/157 (10%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512
+ + ++ G+ + A++ +A + P + + LL ++ A
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLR------------SSFIELLCIDGDFERA 49
Query: 513 CYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDY 572
+ ++ + + A ++ + + +
Sbjct: 50 DEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN-- 107
Query: 573 EMLIREIPGNEEVGRALFEAQVQLKKQRGEDVKDMKF 609
+ + + E L +L++++G D F
Sbjct: 108 ---LSMVSQDYEQVSELALQIEELRQEKGFLANDTSF 141
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 45.8 bits (108), Expect = 8e-06
Identities = 20/164 (12%), Positives = 42/164 (25%), Gaps = 23/164 (14%)
Query: 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468
Q + L + Q+A + ++ K + A L ++ G FE A +
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKD----------ASLRSSFIELLCIDGDFERADE 51
Query: 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNS- 527
+ ++ P + A +L+ A K+ +
Sbjct: 52 QLMQSIKLFPEY------------LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEEL 99
Query: 528 VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQD 571
YE+ E + + + D
Sbjct: 100 TKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 143
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (151), Expect = 9e-11
Identities = 25/255 (9%), Positives = 60/255 (23%), Gaps = 34/255 (13%)
Query: 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369
+++ ++A + + A ++ + Y+K L + A + +
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKM--LVTDLEYALDKKVE 57
Query: 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429
+ L ++ K N + + L + +
Sbjct: 58 QDLWNHAFKNQITTLQGQAKNRANP-----NRSEVQANLSLFLEAASGFYTQLLQELCTV 112
Query: 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKM 489
L K L + VK + +
Sbjct: 113 FNVDLPCRVKSSQLG----------IISNKQTHTSAIVKPQSSSCSYICQH--------- 153
Query: 490 AKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVED 549
L G++ ++ +A Y + N A S G + +
Sbjct: 154 ----CLVHL-GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208
Query: 550 CTAALIVMPSYSKAR 564
++ V + A
Sbjct: 209 YCRSIAVKFPFPAAS 223
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 2e-09
Identities = 27/214 (12%), Positives = 70/214 (32%), Gaps = 13/214 (6%)
Query: 217 LQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNK---LDPEE---LKFMGNEAY 270
LQ K R +R + ++ SG + Q + L +D +G +
Sbjct: 72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISN 131
Query: 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330
+ + + + + + +A + A ++ P + +
Sbjct: 132 KQTHTSAIVKPQSSSCSYICQHCLV--HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPY 189
Query: 331 HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAK---AEALHKHLTKCN--EARELKRWN 385
++LA+L G+ + +Y +S ++ A +AL K L + + +
Sbjct: 190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDF 249
Query: 386 DLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419
+ + + S ++ L+ + + +
Sbjct: 250 IKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL 283
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 61.5 bits (147), Expect = 1e-10
Identities = 45/353 (12%), Positives = 94/353 (26%), Gaps = 30/353 (8%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINS-----SKATYRSNKSAALIGLGRQIE 311
+ E A N ++A L A+ S+ S L G
Sbjct: 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 69
Query: 312 ALVECKEAIRID------PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365
+L ++ ++ + + + + F G + A +K+ L N++ + +
Sbjct: 70 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 129
Query: 366 EAL-----HKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420
+ AR + + + S+ Q A+ + L
Sbjct: 130 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 189
Query: 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480
A N+ ++ VR + G A + A+ + N
Sbjct: 190 NARSQLNRLENLLGNGKYHSDWIS---NANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246
Query: 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKL 540
+ + +A A++ A E + L + + L +
Sbjct: 247 NHFL--QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304
Query: 541 GQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRALFEAQ 593
G+ A AL +L + E + R L +
Sbjct: 305 GRKSDAQRVLLDAL---------KLANRTGFISHFVIEGEAMAQQLRQLIQLN 348
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.7 bits (144), Expect = 1e-10
Identities = 20/178 (11%), Positives = 55/178 (30%), Gaps = 17/178 (9%)
Query: 535 ACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAI--------QDYEMLIREIPGNEEVG 586
+ KL + E + ++ S + + I ++E
Sbjct: 16 WRKFKL-ESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDE 74
Query: 587 RALFE-AQVQLKKQRGEDVKDMKFGSNLVFVSSNERFRHFVT--SPGMAVVLFCSKAEHK 643
L + + ++ + ++G + + + E+F + +V+ + +
Sbjct: 75 GCLRKYRRQCMQDMHQKLSFGPRYGF-VYELETGEQFLETIEKEQKVTTIVVNIYEDGVR 133
Query: 644 Q---VLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPG 698
+ +E + +P V F K+ + + +P +YK G +
Sbjct: 134 GCDALNSSLECLAAEYPMVKFCKIRASNTGAGDR-FSSDVLPTLLVYKGGELISNFIS 190
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.3 bits (137), Expect = 2e-09
Identities = 29/304 (9%), Positives = 68/304 (22%), Gaps = 45/304 (14%)
Query: 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQI----------EALVECKEAI 320
E L L + + N AT + + L L + L + +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100
Query: 321 RIDPCYHRAHHRLAMLYFRLGE--AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEA 378
R++P + H L RL E + + + + H + A
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-------HCWDYRRFVA 153
Query: 379 RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438
+ + + S + ++ L +L ++ L+
Sbjct: 154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 213
Query: 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498
+ + + + L
Sbjct: 214 LVQNA--------------FFTDPNDQSAWFYHRWLLGRAEPLFRCE------------L 247
Query: 499 RGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMP 558
E+C E + + + L ++ ++ + V P
Sbjct: 248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307
Query: 559 SYSK 562
+
Sbjct: 308 MRAA 311
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.1 bits (108), Expect = 7e-06
Identities = 9/92 (9%), Positives = 27/92 (29%)
Query: 265 MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDP 324
+ A+ + + Y R + + L ++E+ E +E +
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273
Query: 325 CYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
L L ++ + ++ ++
Sbjct: 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.8 bits (89), Expect = 0.002
Identities = 14/108 (12%), Positives = 24/108 (22%), Gaps = 3/108 (2%)
Query: 242 QPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA 301
S F + ++ ++ N
Sbjct: 225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 284
Query: 302 ALIGLGRQIEALVECKEAIRIDP---CYHRAHHRLAMLYFRLGEAEKA 346
AL L + E L +DP Y +L + + E A
Sbjct: 285 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
EELK N+ + +E+A+ Y +AI +N S A Y N+S A + AL + A
Sbjct: 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEAR 379
I +D Y + ++R A LG+ A+ Y+ + A +CN+
Sbjct: 71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA-----KMKYQECNKIV 125
Query: 380 ELKRWNDLLKETQNVIS 396
+ K + + ++ S
Sbjct: 126 KQKAFERAIAGDEHKRS 142
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 497 RLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIV 556
+ + N FKA Y+ A YS+ +E N++ NR+ + Y A+ D T A+ +
Sbjct: 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 73
Query: 557 MPSYSKA------------RLEAAIQDYEMLIREIPGNEEVGRALFEAQVQLKKQRGED 603
Y K + AA++DYE +++ P +++ E +K++ E
Sbjct: 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 50.6 bits (120), Expect = 2e-08
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 616 VSSNERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIA 673
V+S F ++ + +V F ++ K++ E+ K + + F+KV+V++ +
Sbjct: 5 VTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVT 64
Query: 674 KSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYS 712
+ E ++S+P FK+YKNGS V + G L++ ++ Y+
Sbjct: 65 EKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.9 bits (118), Expect = 1e-07
Identities = 25/159 (15%), Positives = 42/159 (26%), Gaps = 21/159 (13%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
K G A RFE A A+ + A
Sbjct: 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFA 59
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA--EALHKHLTKCNE 377
+ AH A G A ++ + + ++ + + ++
Sbjct: 60 TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119
Query: 378 A-RELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
A +R L + G D P + AL E +LR
Sbjct: 120 ALGAYRRVKTTLAD-----DLGIDPGPTLRALN-ERILR 152
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 16/137 (11%), Positives = 25/137 (18%), Gaps = 17/137 (12%)
Query: 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL----------R 499
AAGRFE A + A + + L +
Sbjct: 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAK 73
Query: 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA------ 553
+ Y L + A+
Sbjct: 74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 133
Query: 554 -LIVMPSYSKARLEAAI 569
L + P + L I
Sbjct: 134 DLGIDPGPTLRALNERI 150
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 1e-07
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 616 VSSNERFRHFVTSPG--MAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY 671
+ S F+ + + G + VV F + K + + +++ +V FL+V+V+D
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 672 IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVK 709
+A V +P F+ +K G +V E G E LE ++
Sbjct: 65 VASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 616 VSSNERFRHFVTSPG--MAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY 671
V S+ F+ ++ G +AVV F + ++ + ++P FL+V+V
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG 65
Query: 672 IAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLY 711
A + +S+ P F+ ++N R+ + G LE+ +K +
Sbjct: 66 TAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 31/280 (11%), Positives = 70/280 (25%), Gaps = 15/280 (5%)
Query: 240 VKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNK 299
V Q G P + + + R E A L AI +N++ T +
Sbjct: 24 VPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFR 83
Query: 300 SAALIGLGRQI-EALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLAN 358
L L + + E + I P ++ H +L L + + + +
Sbjct: 84 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 143
Query: 359 QKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQR 418
+ H + +E K W++ L+ ++ + +
Sbjct: 144 KNY-------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY-FVISNTTG 195
Query: 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDP 478
+ + + Y ++ L + + + P
Sbjct: 196 YNDRAVLEREVQ-----YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQP 250
Query: 479 NNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518
++ + L K +A
Sbjct: 251 SHSSPYLIAFLVDIYEDM-LENQCDNKEDILNKALELCEI 289
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Score = 47.1 bits (111), Expect = 4e-07
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 619 NERFRHFVTSPGMAVVLFCSK--AEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE 676
E F S + VV F + K + + ++ K+FP+V FLKV+V++ +A+
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW 75
Query: 677 GVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
V ++P F K+G V + G + L V +++
Sbjct: 76 NVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 6e-07
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEA 319
ELK GN+A + +DAL Y AI ++ SN+SAA G +A + +
Sbjct: 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63
Query: 320 IRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSL 356
+ + P + + + R A L E+A Y++
Sbjct: 64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Score = 45.9 bits (108), Expect = 8e-07
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 618 SNERFRHFVTSPGMAVVLF---CSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK 674
++ F+ + +V F L E V K+ V+++P
Sbjct: 6 TDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS 65
Query: 675 SEGVSSIPAFKIYKNGSRVKEIPGHQ 700
G+ SIP ++K G VK++ G+Q
Sbjct: 66 QFGIMSIPTLILFKGGEPVKQLIGYQ 91
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Score = 45.2 bits (106), Expect = 2e-06
Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 610 GSNLVFVSSNERFRHFVT----SPGMAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFL 662
G +++ + S + + VV F + V FL
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60
Query: 663 KVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKLYSS 713
KV+V+ +A++ G++++P F +YK+G + ++ G + L+ V +++
Sbjct: 61 KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 45.0 bits (105), Expect = 4e-06
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 260 EELKFMGNEAYNKARFEDALALYDR----------------AIAINSSKATYRSNKSAAL 303
++K GNE + K +A+ Y + + + N +
Sbjct: 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 77
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
+A+ + ++ID +A ++L + G E+A + K++SL N ++
Sbjct: 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLD 136
Query: 364 KAEALHKHLTKCNEARE 380
+ + K EAR+
Sbjct: 137 IRNSYELCVNKLKEARK 153
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 29/141 (20%)
Query: 488 KMAKAMASARLRGNLLFKASKYKEACYAYSEG----------------LEHEAYNSVLLC 531
K+ A + GN FK ++ EA Y E + +
Sbjct: 13 KVQSA-FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 71
Query: 532 NRAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREI 579
N A C +K Y KA++ + L + + KA LE A ++
Sbjct: 72 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131
Query: 580 PGNEEVGRALFEAQVQLKKQR 600
P N ++ + +LK+ R
Sbjct: 132 PNNLDIRNSYELCVNKLKEAR 152
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 37/280 (13%), Positives = 85/280 (30%), Gaps = 21/280 (7%)
Query: 256 KLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVE 315
K P + +FE+A L +A I + + +
Sbjct: 14 KGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDS--------FLKAAD 65
Query: 316 CKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKC 375
++ + + + G + AV + + + + + A K
Sbjct: 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125
Query: 376 NEARELKRWNDLLKETQNVISFGAD-----SAPQVYALQAEALLRLQRHQEAHDSYNKSP 430
+L + + + + A + + + A+ ++ EA D Y+K
Sbjct: 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185
Query: 431 KFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMA 490
K + + L + + +AA A +T Q+ DPN + +
Sbjct: 186 KSSMGNRLSQWSL---KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES-NFL 241
Query: 491 KAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLL 530
K++ A G+ + E C + + + + +L
Sbjct: 242 KSLIDAVNEGDS----EQLSEHCKEFDNFMRLDKWKITIL 277
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 28/254 (11%), Positives = 71/254 (27%), Gaps = 13/254 (5%)
Query: 329 AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLL 388
+ A +Y E A + K++ +K + EA + ++ + + +
Sbjct: 39 LCVQAATIYRLRKELNLAGDSFLKAADY-QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 389 KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF--CLEYYTKLFGLAGG 446
+N I + L + HD + E+Y + +A
Sbjct: 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157
Query: 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL-----RGN 501
I A + G++ +A + N+ +K
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217
Query: 502 LLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561
+ + +++ E S++ Q + ++ + +
Sbjct: 218 AARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG---DSEQLSEHCKEFDNFMRLDKWKI 274
Query: 562 K--ARLEAAIQDYE 573
+++ +IQ E
Sbjct: 275 TILNKIKESIQQQE 288
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 5e-06
Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 17/169 (10%)
Query: 409 QAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468
+ + + A L+ ++ + + + +Y +A K
Sbjct: 11 EGVLAADKKDWKGA-----------LDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEK 57
Query: 469 TAQDAAQIDPNNKEVIKGVKMAKAMAS----ARLRGNLLFKASKYKEACYAYSEGLEHEA 524
+ D + M A + + GL+ +
Sbjct: 58 AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 117
Query: 525 YNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYE 573
+ +L N A +K +++KA E A + ++++ A++
Sbjct: 118 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 2e-05
Identities = 17/149 (11%), Positives = 48/149 (32%), Gaps = 19/149 (12%)
Query: 245 GEFPQCISSLNKLDPEELKF---MGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSA 301
++ + + + + + +G +A + R+I + A +
Sbjct: 19 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 78
Query: 302 ALIGLGRQIEALVECKEAIRIDP----------------CYHRAHHRLAMLYFRLGEAEK 345
+ A+ + KEA+ + +A +Y + E +K
Sbjct: 79 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 138
Query: 346 AVSHYKKSSSLANQKDIAKAEALHKHLTK 374
A ++S+ ++ +K + + + K
Sbjct: 139 AEEQLALATSMKSEPRHSKIDKAMECVWK 167
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 7e-06
Identities = 25/275 (9%), Positives = 63/275 (22%), Gaps = 36/275 (13%)
Query: 300 SAALIGLGRQIEALVECKEAIRI----DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355
+ L +Q L ++ + D + + +LY LG A + + ++ +
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 356 LANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR 415
+ D+ + + + + + + AL
Sbjct: 66 --IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAHLNRGIALYY 117
Query: 416 LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQ 475
R + A D + + + + Q +
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDP----------FRSLWLYLAEQKLDEKQAKEVLKQHFEK 167
Query: 476 IDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAA 535
D ++ + + + ++ + S
Sbjct: 168 SDKEQWGWNIVEFYLGNIS----------EQTLMERLKADATDNTSLAEHLSETNFYLGK 217
Query: 536 CRSKLGQYEKAVEDCTAALIVMPS----YSKARLE 566
LG + A A+ + A LE
Sbjct: 218 YYLSLGDLDSATALFKLAVANNVHNFVEHRYALLE 252
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 23/240 (9%), Positives = 59/240 (24%), Gaps = 22/240 (9%)
Query: 263 KFMGNEAYNKARFEDALALYDRAIAI----NSSKATYRSNKSAALIGLGRQIEALVECKE 318
+ + + E LA ++ +A + +A + LG + A + +
Sbjct: 3 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 62
Query: 319 AIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA---------EALH 369
A+ I P + L + + G + A + L + A
Sbjct: 63 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 122
Query: 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALL---------RLQRHQ 420
+ + + D L+ ++ +
Sbjct: 123 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 182
Query: 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480
+ + + + Y++ G + A + A + +N
Sbjct: 183 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRA---------------IAINSSKATYRSNKSAALI 304
+K G + ++ A+ Y + A S N + +
Sbjct: 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75
Query: 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDIA 363
L +A+ C +A+ +D + +R + E E A ++K + K
Sbjct: 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135
Query: 364 KAEALHKHLTKCNEARELKRWNDLLK 389
+ + K + R+ + + ++ K
Sbjct: 136 LQIFMCQKKAKEHNERDRRTYANMFK 161
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 28/148 (18%)
Query: 488 KMAKAMASARLRGNLLFKASKYKEACYAYS---------------EGLEHEAYNSVLLCN 532
K+ +A + +G + FK KY +A Y E E++ N
Sbjct: 11 KLEQAAI-VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 69
Query: 533 RAACRSKLGQYEKAVEDCTAALIVMPSYSKA------------RLEAAIQDYEMLIREIP 580
A C KL +Y KAVE C AL + + K E+A D+E ++ P
Sbjct: 70 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129
Query: 581 GNEEVGRALFEAQVQLKKQRGEDVKDMK 608
N+ +F Q + K+ D +
Sbjct: 130 QNKAARLQIFMCQKKAKEHNERDRRTYA 157
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 37.6 bits (86), Expect = 0.002
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 453 RAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNL---LFKASKY 509
+ VY G++ AV + + A NL K +Y
Sbjct: 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 80
Query: 510 KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLE 566
+A + L ++ N L R + + ++E A D L V P ARL+
Sbjct: 81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 137
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRA----------------IAINSSKATYRSNKSAAL 303
E+LK +GN + +E A+ Y + + + N A
Sbjct: 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 87
Query: 304 IGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363
+ + A+ C EA+ IDP +A +R A + L E ++A++ KK+ + +D A
Sbjct: 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKA 146
Query: 364 KAEALHKHLTKCNEARE 380
L K K ++
Sbjct: 147 IQAELLKVKQKIKAQKD 163
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.1 bits (87), Expect = 0.001
Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 31/152 (20%)
Query: 477 DPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEG----------------L 520
D + K+V K + +++ + + GN FK+ ++ A Y++
Sbjct: 14 DVDLKDVDKILLISEDL---KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA 70
Query: 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPS------------YSKARLEAA 568
+ + + N AC+ K+ ++ AV+ C AL + PS + A
Sbjct: 71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 130
Query: 569 IQDYEMLIREIPGNEEVGRALFEAQVQLKKQR 600
+ D + P ++ + L + + ++K Q+
Sbjct: 131 LADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 0.001
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 214 YKNLQDV--PKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYN 271
KN+ + Q + + V+ + + + L + + +G
Sbjct: 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 89
Query: 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHH 331
+ ++ A+ A+ I+ S ++ GL +AL + K+A I P
Sbjct: 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149
Query: 332 RLAMLYFRLG---EAEKAV 347
L + ++ + EKA
Sbjct: 150 ELLKVKQKIKAQKDKEKAA 168
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 4e-05
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-------RQ 309
L E+ +G AY +A + ++A+ +K + L L
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342
+AL+ K+ + +DP + RA+ L + + +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 19/112 (16%)
Query: 614 VFVSSNERFRHFVTSPGMAVVLFCSKAEH-----------KQVLQLMEQVCKRFPS-VNF 661
V VS E F V + Q ++ + K F
Sbjct: 4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVF 63
Query: 662 LKVEVEDHP-------YIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706
+ +V + P K+ V+++P Y ++ E Q L+E
Sbjct: 64 IYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEM 115
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 38.7 bits (88), Expect = 0.001
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYR 296
DP+EL +G ++Y + F A +++A + + +
Sbjct: 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFN 39
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.001
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 267 NEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG---LGRQIEALVECKEAIRID 323
NE + + A S + + + L+ + +V +E +
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 324 PCYHR--AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTK 374
+ LA+ +RL E EKA+ + + L + +A+ L + + K
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRG--LLQTEPQNNQAKELERLIDK 117
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.001
Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 260 EELKFMGNEAYNKARFEDALALYDRA---------------IAINSSKATYRSNKSAALI 304
+K G + + +++ AL Y + + + N + +
Sbjct: 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73
Query: 305 GLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA-NQKDIA 363
L A+ C +A+ +D + R + + + E A + ++K L N K
Sbjct: 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133
Query: 364 KAEALHKHLTKCNEARELKRWNDLLK 389
A+ + + ARE K + ++ +
Sbjct: 134 TQLAVCQQRIRRQLAREKKLYANMFE 159
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 36.6 bits (83), Expect = 0.003
Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKA 506
AYL + AQ + AG +++A + A +I L
Sbjct: 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68
Query: 507 SKYKEACYAYSEGLEHEAYNSVLLC-----------NRAACRSKLGQYEKAVEDCTAALI 555
+ EA ++ + L + L +RA LG+ +A+ + +
Sbjct: 69 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128
Query: 556 VMPSYSKARLEAAIQDYEMLIREI 579
++ E ++
Sbjct: 129 MIEERK-----GETPGKERMMEVA 147
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.83 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.65 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.6 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.59 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.59 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.57 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.52 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.51 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.49 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.49 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.48 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.48 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.47 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.42 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.34 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.34 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.32 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.32 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.31 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.3 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.28 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.2 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.19 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.16 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.14 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.14 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.13 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.05 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.88 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.87 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.81 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.76 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 98.72 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.66 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.52 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.18 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.0 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 97.99 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.96 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 97.87 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 97.84 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 97.84 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 97.82 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 97.71 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 97.59 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 97.47 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 97.18 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 97.02 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.01 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.8 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 96.74 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 96.59 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 96.39 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.3 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.06 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 96.05 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 96.03 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 96.0 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 95.97 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 95.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.87 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 95.83 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 95.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.54 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 95.36 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.28 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 95.26 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 94.55 | |
| d1a8ya3 | 119 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 93.92 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 92.85 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 92.48 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 92.36 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 92.11 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 91.88 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 91.08 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 89.66 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.03 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 87.29 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 87.03 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 86.09 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 84.18 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 80.39 | |
| d1t4za_ | 105 | Adaptive-response sensory-kinase SasA, N-terminal | 80.38 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-32 Score=286.71 Aligned_cols=308 Identities=17% Similarity=0.124 Sum_probs=265.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE 342 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 342 (713)
+.+|..+++.|+|++|+..|+++++.+|+++.++..+|.+|..+|++++|+.+|+++++++|+++.+|..+|.+|..+|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhccccHHHHH--------------------------------------------------------
Q 005125 343 AEKAVSHYKKSSSLANQKDIAKAE-------------------------------------------------------- 366 (713)
Q Consensus 343 ~~~A~~~~~~al~~~~p~~~~~~~-------------------------------------------------------- 366 (713)
+++|+..+..+.. .+|.......
T Consensus 83 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 8888888877777 6555432110
Q ss_pred ------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh
Q 005125 367 ------ALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL 440 (713)
Q Consensus 367 ------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 440 (713)
....+..++..+...+++++|+..+++++..+|++. .++..+|.++...|++++|+..|++++...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 235 (388)
T d1w3ba_ 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLRALSLSPN----- 235 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-----
T ss_pred hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccH-HHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-----
Confidence 012344556777788999999999999999999985 78999999999999999999999999887774
Q ss_pred hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Q 005125 441 FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGL 520 (713)
Q Consensus 441 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 520 (713)
.+..+..+|.++...|++++|+..|+++++++|+++.++. .+|.++...|++++|+..|+.++
T Consensus 236 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 236 -----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC------------NLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH------------HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHhhh
Confidence 5668889999999999999999999999999999999887 69999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCCCCHHHHHH
Q 005125 521 EHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIPGNEEVGRA 588 (713)
Q Consensus 521 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p~~~~~~~~ 588 (713)
...|.+...+..+|.++...|++++|+..|+++++++|+++.+++ ++|+..|+++++++|++++++..
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 378 (388)
T d1w3ba_ 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999998877 99999999999999999999888
Q ss_pred HHHHHH
Q 005125 589 LFEAQV 594 (713)
Q Consensus 589 l~~~~~ 594 (713)
|..+..
T Consensus 379 lg~~~~ 384 (388)
T d1w3ba_ 379 MGNTLK 384 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-31 Score=277.64 Aligned_cols=329 Identities=16% Similarity=0.146 Sum_probs=284.6
Q ss_pred chhHHHHHHHhhhhcCCCccccccccccccchhhhhcCCC--CchhhhHhh---cCCCCHHHHHHHHHHHHHhcCHHHHH
Q 005125 205 ATVKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPS--GEFPQCISS---LNKLDPEELKFMGNEAYNKARFEDAL 279 (713)
Q Consensus 205 ~~~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~--~~a~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~ 279 (713)
+.++|+..|+++++.+|+ ... ....+|.++...+ ++|...+++ .+|.+++++..+|.++...|++++|+
T Consensus 14 ~~~~A~~~~~~~l~~~p~--~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQEPD--NTG----VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 467888888888888874 222 3345778887777 567777776 78888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHH----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 280 ALYDRAIAINSSKATYRS----------------------------------NKSAALIGLGRQIEALVECKEAIRIDPC 325 (713)
Q Consensus 280 ~~~~~al~~~p~~~~~~~----------------------------------~la~~~~~~g~~~~A~~~~~~al~~~p~ 325 (713)
..+..+++.+|....... ..+......+....+...+.+.+...|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T d1w3ba_ 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcc
Confidence 888888887776544333 3333444455566777777777888889
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 005125 326 YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQV 405 (713)
Q Consensus 326 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 405 (713)
+..++..+|.++...|++++|...+++++. .+|++. ..+..++..+...+++++|+..+++++...+... ..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~ 239 (388)
T d1w3ba_ 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFL------DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VV 239 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTTCH------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-HH
T ss_pred hhHHHHhhcccccccCcHHHHHHHHHHHHH-hCcccH------HHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH-HH
Confidence 999999999999999999999999999999 999985 5677889999999999999999999999999885 78
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
+..+|.++...|++++|+.+|++++++.|+ .+.++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 309 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH----------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh
Confidence 888999999999999999999999999885 5668999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 486 GVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 486 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
.+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++.
T Consensus 310 ------------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 377 (388)
T d1w3ba_ 310 ------------NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp ------------HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHH
Q 005125 566 EAAI 569 (713)
Q Consensus 566 ~~A~ 569 (713)
..+.
T Consensus 378 ~lg~ 381 (388)
T d1w3ba_ 378 NMGN 381 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.6e-28 Score=249.05 Aligned_cols=257 Identities=14% Similarity=0.080 Sum_probs=216.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
.+.+|..++..|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+.+|.++++++|++..+|..+|.+|...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHH
Q 005125 342 EAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQE 421 (713)
Q Consensus 342 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 421 (713)
++++|++.+++++. ..|........... .... .. ..........+...+.+.+
T Consensus 102 ~~~~A~~~~~~~~~-~~~~~~~~~~~~~~----~~~~---------------------~~-~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 102 LQRQACEILRDWLR-YTPAYAHLVTPAEE----GAGG---------------------AG-LGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp CHHHHHHHHHHHHH-TSTTTGGGCC-----------------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccchhhHHH-hccchHHHHHhhhh----hhhh---------------------cc-cccchhhHHHHHHhhHHHH
Confidence 99999999999999 88875311000000 0000 00 0011112233455677888
Q ss_pred HHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005125 422 AHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGN 501 (713)
Q Consensus 422 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~ 501 (713)
|+..|.+++.++|+. ..+.++..+|.++...|++++|+.+|++++..+|++..+|. .+|.
T Consensus 155 a~~~~~~al~~~p~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~lg~ 214 (323)
T d1fcha_ 155 VKELFLAAVRLDPTS--------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN------------KLGA 214 (323)
T ss_dssp HHHHHHHHHHHSTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHH
T ss_pred HHHHHHHHHHHhhcc--------cccccchhhHHHHHHHHHHhhhhcccccccccccccccchh------------hhhh
Confidence 999999988887753 34678899999999999999999999999999999999887 6999
Q ss_pred HHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 502 LLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 502 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
++...|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++|++++|++..++.
T Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 215 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred cccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999877665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.9e-25 Score=222.21 Aligned_cols=254 Identities=14% Similarity=0.122 Sum_probs=195.5
Q ss_pred HHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 005125 282 YDRAIAINSS----KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLA 357 (713)
Q Consensus 282 ~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 357 (713)
|++++...++ +....+.+|..+...|++++|+..|+++++.+|+++.+|..+|.+|..+|++++|+.+|.++++ +
T Consensus 4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~ 82 (323)
T d1fcha_ 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE-L 82 (323)
T ss_dssp HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H
T ss_pred hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc-c
Confidence 4444444333 2345678999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhH
Q 005125 358 NQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYY 437 (713)
Q Consensus 358 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (713)
+|++. ..+..+|.+|...|++++|+..+++++...|...
T Consensus 83 ~p~~~-----------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 121 (323)
T d1fcha_ 83 KPDNQ-----------------------------------------TALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121 (323)
T ss_dssp CTTCH-----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred ccccc-----------------------------------------cccccccccccccccccccccchhhHHHhccchH
Confidence 99874 4455555555555555555555555555554432
Q ss_pred Hhhhccc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Q 005125 438 TKLFGLA-----GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEA 512 (713)
Q Consensus 438 ~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 512 (713)
....... ............+...+.+.+|+..|.+++.++|+...... +..+|.++...|++++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~----------~~~l~~~~~~~~~~~~A 191 (323)
T d1fcha_ 122 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV----------QCGLGVLFNLSGEYDKA 191 (323)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc----------chhhHHHHHHHHHHhhh
Confidence 2111000 00001111223445667889999999999999998643322 12699999999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHHHHHhCC
Q 005125 513 CYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL------------EAAIQDYEMLIREIP 580 (713)
Q Consensus 513 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~~A~~~~~~al~~~p 580 (713)
+..|++++..+|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+++ ++|+..|++|++++|
T Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred CCHHHHH
Q 005125 581 GNEEVGR 587 (713)
Q Consensus 581 ~~~~~~~ 587 (713)
++.....
T Consensus 272 ~~~~~~~ 278 (323)
T d1fcha_ 272 KSRGPRG 278 (323)
T ss_dssp TC-----
T ss_pred cChhhhh
Confidence 9887543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.3e-22 Score=202.71 Aligned_cols=253 Identities=13% Similarity=0.076 Sum_probs=205.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG-RQIEALVECKEAIRIDPCYHRAHHR 332 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 332 (713)
..|+..+++..+|.++...+.+++|+.+|++||+++|.+..+|+++|.++..+| ++++|+.+++++++++|++..+|..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456777889999999999999999999999999999999999999999999987 5999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 005125 333 LAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEA 412 (713)
Q Consensus 333 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 412 (713)
+|.++..+|++++|+.+|.++++ ++|.+. .+|..+|.+
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~-~dp~n~-----------------------------------------~a~~~~~~~ 155 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILN-QDAKNY-----------------------------------------HAWQHRQWV 155 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHH-HCTTCH-----------------------------------------HHHHHHHHH
T ss_pred HhHHHHhhccHHHHHHHHhhhhh-hhhcch-----------------------------------------HHHHHHHHH
Confidence 99999999999999999999999 999884 677788888
Q ss_pred HHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 413 LLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGR------FEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
+..+|++++|+.+|+++++++|. +..+|+++|.++...+. +++|+..+.+++.++|++..+|.
T Consensus 156 ~~~~~~~~~Al~~~~~al~~~p~----------n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~- 224 (315)
T d2h6fa1 156 IQEFKLWDNELQYVDQLLKEDVR----------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN- 224 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH-
T ss_pred HHHHHhhHHHHHHHHHHHHHCCc----------cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHH-
Confidence 88888888888888888888774 45577788888777665 68899999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN--SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKAR 564 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 564 (713)
.++.++... .++++...++.++++.|+. +.++..++.+| ...++..++.....
T Consensus 225 -----------~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y-------------~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 225 -----------YLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY-------------EDMLENQCDNKEDI 279 (315)
T ss_dssp -----------HHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH-------------HHHHHTTCSSHHHH
T ss_pred -----------HHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH-------------HHHHhcCHHHHHHH
Confidence 577765444 4688889999998888764 44555555544 33444555555555
Q ss_pred HHHHHHHHHHH-HHhCCCCHH
Q 005125 565 LEAAIQDYEML-IREIPGNEE 584 (713)
Q Consensus 565 ~~~A~~~~~~a-l~~~p~~~~ 584 (713)
+++|+..++.. .+.||-...
T Consensus 280 ~~ka~~l~~~l~~~~DpiR~~ 300 (315)
T d2h6fa1 280 LNKALELCEILAKEKDTIRKE 300 (315)
T ss_dssp HHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHHhcCHHHHH
Confidence 55566555552 344554433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=1.6e-23 Score=214.15 Aligned_cols=261 Identities=12% Similarity=0.004 Sum_probs=230.8
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005125 272 KARFEDALALYDRAIAINSSKATYRSNKSAALIGLG----------RQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLG 341 (713)
Q Consensus 272 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 341 (713)
.+..++|+.+++++++.+|++..+|..++.++..++ ++.+|+.++++++..+|++..+|..+|.++...+
T Consensus 42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 344589999999999999999999988887766544 4889999999999999999999999999998877
Q ss_pred C--HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 342 E--AEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 342 ~--~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
+ +++|+..+.+++. .+|.+... .....+..+...+.+++|+..+++++..+|.+. .+|..+|.++..+|++
T Consensus 122 ~~~~~~a~~~~~~al~-~~~~~~~~-----~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~-~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 122 EPNWARELELCARFLE-ADERNFHC-----WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp SCCHHHHHHHHHHHHH-HCTTCHHH-----HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-HHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHh-hCchhhhh-----hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCH
Confidence 5 8999999999999 99987532 234556777788999999999999999999986 8899999999999999
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLR 499 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~l 499 (713)
++|+..+++++.+.|.... ....+...+..++|...|.+++..+|.+...+. .+
T Consensus 195 ~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~------------~l 248 (334)
T d1dcea1 195 PDSGPQGRLPENVLLKELE--------------LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCE------------LS 248 (334)
T ss_dssp CCSSSCCSSCHHHHHHHHH--------------HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCC------------CC
T ss_pred HHHHHHHHHhHHhHHHHHH--------------HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHH------------HH
Confidence 9999999999988775432 344566778889999999999999999888776 68
Q ss_pred HHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 500 GNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 500 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|.++...+++.+|+..|.+++..+|.+..++..+|.++..+|++++|+.+|+++++++|.....|.
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-22 Score=203.46 Aligned_cols=234 Identities=14% Similarity=0.045 Sum_probs=208.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhhccccHHH
Q 005125 286 IAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGE-AEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 286 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~p~~~~~ 364 (713)
|..+|+..+++..+|.++...+.+++|+..++++|+++|++..+|..+|.++..+|+ +++|+.++++++. ++|++.
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~-~~p~~~-- 112 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPKNY-- 112 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTCH--
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHhhh--
Confidence 455778889999999999999999999999999999999999999999999999874 9999999999999 888873
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhccc
Q 005125 365 AEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLA 444 (713)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 444 (713)
.+|..+|.++..+|++++|+.+|+++++++|+
T Consensus 113 ---------------------------------------~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~--------- 144 (315)
T d2h6fa1 113 ---------------------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------- 144 (315)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------
T ss_pred ---------------------------------------hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc---------
Confidence 89999999999999999999999999999995
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc------HHHHHHHHHH
Q 005125 445 GGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASK------YKEACYAYSE 518 (713)
Q Consensus 445 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~ 518 (713)
+..+|.++|.++...|++++|+.+|+++++++|.+..+|. ++|.++...+. +++|+..+.+
T Consensus 145 -n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~------------~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 145 -NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN------------QRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp -CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHH------------HHHHHHHHccccchhhhhHHhHHHHHH
Confidence 5668999999999999999999999999999999999998 68888777665 7899999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHHhCCCCHH
Q 005125 519 GLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL-EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 519 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~~A~~~~~~al~~~p~~~~ 584 (713)
+++++|++..+|.+++.++...| .+++...++.++++.|+....+. ......|...++..+++..
T Consensus 212 al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 212 MIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999876554 68899999999999998766655 4445667777777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7.3e-21 Score=186.50 Aligned_cols=226 Identities=12% Similarity=-0.020 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005125 274 RFEDALALYDRAIAINS----SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSH 349 (713)
Q Consensus 274 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 349 (713)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34445555555554322 23445556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhcc
Q 005125 350 YKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKS 429 (713)
Q Consensus 350 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (713)
|++++. ++|++. .++..+|.+|..+|++++|+..|+++
T Consensus 94 ~~~al~-~~p~~~-----------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 94 FDSVLE-LDPTYN-----------------------------------------YAHLNRGIALYYGGRDKLAQDDLLAF 131 (259)
T ss_dssp HHHHHH-HCTTCT-----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHH-HHhhhh-----------------------------------------hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666665 555542 44455555555555555555555555
Q ss_pred ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Q 005125 430 PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKY 509 (713)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 509 (713)
++..|+. ......++.++...+..+.+...........+........ ...++. ....+.+
T Consensus 132 l~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~ 191 (259)
T d1xnfa_ 132 YQDDPND----------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV---------EFYLGN-ISEQTLM 191 (259)
T ss_dssp HHHCTTC----------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHH---------HHHTTS-SCHHHHH
T ss_pred Hhhcccc----------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHH---------HHHHHH-HHHHHHH
Confidence 5554432 2233344555555555444444444444444433221110 001111 1223445
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 005125 510 KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYS 561 (713)
Q Consensus 510 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 561 (713)
+.+...+..++...|....+|+++|.+|..+|++++|+.+|++++..+|++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 6666666666667777777888888888888888888888888888888764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=1.9e-21 Score=198.50 Aligned_cols=274 Identities=9% Similarity=-0.052 Sum_probs=218.6
Q ss_pred hHHHHHHHhhhhcCCCccccccccccccchhhhhcCCCCchhhhHhhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005125 207 VKTVDYLYKNLQDVPKQRYGESRLGRNGVMGNIVKQPSGEFPQCISSLNKLDPEELKFMGNEAYNKARFEDALALYDRAI 286 (713)
Q Consensus 207 ~~Ai~~~~kal~~~P~~~~~~~~~~~~~~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 286 (713)
++|+++++++++++|+ +..+|. . .+.++ ..+...+..+...|++++|+.+|++++
T Consensus 46 ~~al~~~~~~l~~~P~--~~~a~~---~-r~~~l-------------------~~l~~~~~~~~~~~~~~~al~~~~~~l 100 (334)
T d1dcea1 46 ESVLELTSQILGANPD--FATLWN---C-RREVL-------------------QHLETEKSPEESAALVKAELGFLESCL 100 (334)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHH---H-HHHHH-------------------HHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--cHHHHH---H-HHHHH-------------------HHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 4888888888888864 222221 0 11111 112333445566677899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 287 AINSSKATYRSNKSAALIGLGR--QIEALVECKEAIRIDPCYHRAH-HRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 287 ~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
+.+|++..+|+.+|.++...++ +++|+..+++++.++|.+..++ ..+|.++...+.+++|+.++++++. .+|.+.
T Consensus 101 ~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-~~p~~~- 178 (334)
T d1dcea1 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFSNY- 178 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-TTCCCH-
T ss_pred HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH-cCCCCH-
Confidence 9999999999999998888764 8899999999999999988876 4677888889999999999999999 999884
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 364 KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
..+..++.++..+|++++|+..+.+++...|... .....+..++..++|...|.+++...|....
T Consensus 179 -----~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~----- 243 (334)
T d1dcea1 179 -----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-----ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF----- 243 (334)
T ss_dssp -----HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-----HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS-----
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-----HHHHHHHHhcchhHHHHHHHHHHHhCcchhh-----
Confidence 6778888899999999988888877777765432 2344556778888999999999888775433
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 444 AGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
.+..+|.++...+++++|+..+.+++..+|.+..++. .+|.++...|++++|+.+|+++++++
T Consensus 244 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~------------~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 244 -----RCELSVEKSTVLQSELESCKELQELEPENKWCLLTII------------LLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp -----SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------HHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 4455688899999999999999999999998888877 69999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 005125 524 AYNSVLLCNRAACRSK 539 (713)
Q Consensus 524 p~~~~~~~~la~~~~~ 539 (713)
|.+...|.+|+..+..
T Consensus 307 P~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 307 PMRAAYLDDLRSKFLL 322 (334)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhH
Confidence 9999999999888874
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.5e-19 Score=183.75 Aligned_cols=289 Identities=12% Similarity=-0.021 Sum_probs=233.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-----ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------ 326 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 326 (713)
+++.....|.+++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+..|++++.+.+..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45678889999999999999999999999999986 3578899999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC---
Q 005125 327 HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI--AKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS--- 401 (713)
Q Consensus 327 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 401 (713)
..++..++.++...|++..|...+.+++. +.+... ...........++..+...++++.+...+.+++...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 56788999999999999999999999987 443221 111223456677889999999999999999999876543
Q ss_pred -hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 402 -APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNN 480 (713)
Q Consensus 402 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 480 (713)
....+...+..+...+++.++...+.++.......... ......++..++.++...|++++|...+++++...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 246 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH---SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc---CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence 23667778999999999999999998876543321110 01235577888999999999999999999999888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 481 KEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH------EAYNSVLLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
..... ..+.++|.++...|++++|+..+++++.. .|....++..+|.+|..+|++++|+..+++|+
T Consensus 247 ~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 247 NHFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp CGGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43322 12236899999999999999999999843 45567899999999999999999999999999
Q ss_pred HhCC
Q 005125 555 IVMP 558 (713)
Q Consensus 555 ~~~p 558 (713)
++.+
T Consensus 319 ~l~~ 322 (366)
T d1hz4a_ 319 KLAN 322 (366)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.6e-19 Score=175.29 Aligned_cols=208 Identities=13% Similarity=0.009 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.+|
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH----
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEAL---- 413 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~---- 413 (713)
..+|++++|+..|+++++ .+|.+.. .....+......+....+...........+..... .+...+
T Consensus 116 ~~~g~~~~A~~~~~~al~-~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 185 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ-DDPNDPF------RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW---NIVEFYLGNI 185 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTCHH------HHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH---HHHHHHTTSS
T ss_pred HHHhhHHHHHHHHHHHHh-hccccHH------HHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh---hHHHHHHHHH
Confidence 999999999999999999 9998752 23334445555555555555555555555544311 111222
Q ss_pred HHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 414 LRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
...+.++.+...+.......|. ...+++.+|.+|...|++++|+.+|++++..+|++...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 186 SEQTLMERLKADATDNTSLAEH----------LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCcc----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1234466666666666665554 3457889999999999999999999999999998765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3.6e-17 Score=167.26 Aligned_cols=279 Identities=14% Similarity=0.038 Sum_probs=224.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 291 SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY-----HRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
..+++...+|.++...|++++|+.+|+++++..|++ ..++..+|.+|...|++++|+..|++++. +.+......
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~ 88 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhcchH
Confidence 346677888999999999999999999999999986 45788999999999999999999999999 777665556
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-----C--hHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHH
Q 005125 366 EALHKHLTKCNEARELKRWNDLLKETQNVISFGAD-----S--APQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYT 438 (713)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 438 (713)
.........+..+...+++..++..+.+++...+. . ....+..+|.++...|+++.|..++.+++...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence 66777888999999999999999999999875321 1 2356777899999999999999999998876654322
Q ss_pred hhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005125 439 KLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSE 518 (713)
Q Consensus 439 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 518 (713)
. .....+...+.++...+++.++...+.++............. ....+..++.++...|++++|...+++
T Consensus 169 ~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~ 238 (366)
T d1hz4a_ 169 Q-----QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-----ISNANKVRVIYWQMTGDKAAAANWLRH 238 (366)
T ss_dssp G-----GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch-----HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 1 345678889999999999999999999998865432211110 012233689999999999999999999
Q ss_pred HhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHH------------HHHHHHHHHHH
Q 005125 519 GLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVM------PSYSKARL------------EAAIQDYEMLI 576 (713)
Q Consensus 519 al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~------------~~A~~~~~~al 576 (713)
++...+.+ ...+.++|.++..+|++++|+..+++++... |....++. ++|+..|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 239 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99887654 5678889999999999999999999998652 33333333 78899999888
Q ss_pred HhCC
Q 005125 577 REIP 580 (713)
Q Consensus 577 ~~~p 580 (713)
++.+
T Consensus 319 ~l~~ 322 (366)
T d1hz4a_ 319 KLAN 322 (366)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8743
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=2.7e-16 Score=156.12 Aligned_cols=229 Identities=13% Similarity=0.038 Sum_probs=172.5
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHH
Q 005125 273 ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRID------PCYHRAHHRLAMLYFRLGEAEKA 346 (713)
Q Consensus 273 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A 346 (713)
++|++|.++|.++ |.+|..+|+|++|+.+|++++++. ++...+|..+|.+|..+|++++|
T Consensus 31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3577777777665 788999999999999999999873 22357899999999999999999
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHccCHH
Q 005125 347 VSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE-LKRWNDLLKETQNVISFGADS-----APQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 347 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~ 420 (713)
+.+|++++. +.+...........+..++..+.. .+++++|+..|++++.+.+.. ...++..+|.++..+|+|+
T Consensus 97 ~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 97 VDSLENAIQ-IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhH-HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 999999999 776665555566677788887755 699999999999998774321 2367888999999999999
Q ss_pred HHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 005125 421 EAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRG 500 (713)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg 500 (713)
+|+.+|++++...+....... .....+...|.++...|+++.|...++++++++|........ ..+..+.
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~-------~~l~~l~ 245 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQW---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES-------NFLKSLI 245 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H-------HHHHHHH
T ss_pred HHHHHHHHHHHhCccchhhhh---hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH-------HHHHHHH
Confidence 999999999887765432111 234567888999999999999999999999999876654321 1112344
Q ss_pred HHHHH--cccHHHHHHHHHHHhccCCCC
Q 005125 501 NLLFK--ASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 501 ~~~~~--~g~~~~A~~~~~~al~~~p~~ 526 (713)
.++.. .+.+++|+..|.++.+++|..
T Consensus 246 ~a~~~~d~e~~~eai~~y~~~~~lD~~~ 273 (290)
T d1qqea_ 246 DAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (290)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCHHH
Confidence 44443 456999999999988887633
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.8e-16 Score=142.76 Aligned_cols=150 Identities=17% Similarity=0.093 Sum_probs=132.1
Q ss_pred HHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005125 407 ALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKG 486 (713)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 486 (713)
++.|..+...|+|++|++.|.++.. .++.+++++|.+|..+|++++|+.+|++|++++|+++.++.
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i~~-------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~- 74 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAVQD-------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF- 74 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSS-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHH-
Confidence 3569999999999999999998643 24558999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 487 VKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN----------------SVLLCNRAACRSKLGQYEKAVEDC 550 (713)
Q Consensus 487 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~ 550 (713)
++|.++..+|++++|+..|++++...+.+ ..+++++|.++..+|++++|++.+
T Consensus 75 -----------~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l 143 (192)
T d1hh8a_ 75 -----------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 143 (192)
T ss_dssp -----------HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 79999999999999999999999765432 578999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHhCCC
Q 005125 551 TAALIVMPSYSKARLEAAIQDYEMLIREIPG 581 (713)
Q Consensus 551 ~~al~~~p~~~~a~~~~A~~~~~~al~~~p~ 581 (713)
++|+.+.|+.....++.|+..+.+.....|.
T Consensus 144 ~~A~~~~~~~~~~~~~~Al~~~~~~~~~~~~ 174 (192)
T d1hh8a_ 144 ALATSMKSEPRHSKIDKAMECVWKQKLYEPV 174 (192)
T ss_dssp HHHHTTCCSGGGGHHHHHHHHHHTTCCCCCC
T ss_pred HHHHhcCCCcchHHHHHHHHHHHhhhhCCcc
Confidence 9999999998777788888877766555553
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.6e-16 Score=128.76 Aligned_cols=100 Identities=22% Similarity=0.378 Sum_probs=91.2
Q ss_pred ceeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.++|...+.. ....++.|++ |++|+.+.|.|+++++.++++.|+.+|+|+.+.++..++|.++|||++|+
T Consensus 3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (107)
T d1gh2a_ 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCceeceEEEEEE
Confidence 5667788899988765 3356666888 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|+.++++.|.+++.|+++|+++.
T Consensus 83 ~G~~v~~~~G~~~~~l~~~i~k~l 106 (107)
T d1gh2a_ 83 NKVRIDQYQGADAVGLEEKIKQHL 106 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHhh
Confidence 999999999999999999999875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.2e-17 Score=175.60 Aligned_cols=273 Identities=9% Similarity=-0.020 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 276 EDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 276 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
-+|+++|++|+++.|+.++++.++|.++...+++.+| |++++..+|+...++...+.+.. ..|..+++.+++..+
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHhcc
Confidence 3799999999999999999999999999999999886 89999999987776544443332 235677888887776
Q ss_pred hhcc--ccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCC
Q 005125 356 LANQ--KDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFC 433 (713)
Q Consensus 356 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (713)
... +..... ...........+.|+.++..+.+++.++|+.. ..+..+|..+...|++++|+..+++++..+
T Consensus 78 -~~~~~~~~~~~-----~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 78 -NRANPNRSEVQ-----ANLSLFLEAASGFYTQLLQELCTVFNVDLPCR-VKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp -CSSCTTTTHHH-----HHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH
T ss_pred -cccCccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCChhhH-HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 332 221111 11123445567889999999999999998875 788899999999999999999999998765
Q ss_pred hhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Q 005125 434 LEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEAC 513 (713)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 513 (713)
+. .++..+|.++...|++++|+.+|++|++++|+++..++ ++|.++...|++.+|+
T Consensus 151 ~~------------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~------------~Lg~~~~~~~~~~~A~ 206 (497)
T d1ya0a1 151 CQ------------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN------------QLAILASSKGDHLTTI 206 (497)
T ss_dssp HH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH------------HHHHHHHHTTCHHHHH
T ss_pred HH------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHH------------HHHHHHHHcCCHHHHH
Confidence 53 37888999999999999999999999999999999998 7999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh---CC--CChHHHHHHHHHHHHHHHHh
Q 005125 514 YAYSEGLEHEAYNSVLLCNRAACRSKLGQY----------EKAVEDCTAALIV---MP--SYSKARLEAAIQDYEMLIRE 578 (713)
Q Consensus 514 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~---~p--~~~~a~~~~A~~~~~~al~~ 578 (713)
.+|.+|+..+|..+.++.+|+.++.+..+. ...+..|-+...+ .- +......++.+..|...+..
T Consensus 207 ~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 286 (497)
T d1ya0a1 207 FYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQ 286 (497)
T ss_dssp HHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998765532 2333333332211 11 11112226667777777777
Q ss_pred CCCCHH
Q 005125 579 IPGNEE 584 (713)
Q Consensus 579 ~p~~~~ 584 (713)
.+-...
T Consensus 287 ~~~~~~ 292 (497)
T d1ya0a1 287 KAFNSQ 292 (497)
T ss_dssp TCSCHH
T ss_pred CCCcHH
Confidence 665544
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.66 E-value=4.1e-16 Score=127.27 Aligned_cols=100 Identities=26% Similarity=0.530 Sum_probs=93.8
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+..+.+..+|...+......++.|++ |++|+.+.|.++++++.+++..|+.+|+|+.+.++..++|.++||+++|++|
T Consensus 2 v~~i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G 81 (103)
T d1syra_ 2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG 81 (103)
T ss_dssp CEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT
T ss_pred cEEeCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeeecceEEEEEECC
Confidence 45567888999999888888888999 9999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCCCHHHHHHHHHhhh
Q 005125 691 SRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 691 ~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+.++++.|.+.++|.++|++|.
T Consensus 82 ~~v~~~~G~~~~~l~~~i~k~a 103 (103)
T d1syra_ 82 SSVDTLLGANDSALKQLIEKYA 103 (103)
T ss_dssp EEEEEEESCCHHHHHHHHHTTC
T ss_pred EEEEEEeCcCHHHHHHHHHhhC
Confidence 9999999999999999999874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.5e-15 Score=150.68 Aligned_cols=213 Identities=9% Similarity=0.019 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAINS------SKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCY------H 327 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 327 (713)
+.|...|.+|...|+|++|+.+|.+++++.. ..+.++.++|.+|..+|++++|+.+|++++.+.+.. .
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 4688899999999999999999999999732 235689999999999999999999999999986544 6
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCh----
Q 005125 328 RAHHRLAMLYFR-LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSA---- 402 (713)
Q Consensus 328 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---- 402 (713)
.++..+|.+|.. .|++++|+.+|++++. +.+...........+..++.++...|+|++|+..|++++...+...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~-l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHH-HHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 778899998865 6999999999999998 6655444445566788899999999999999999999999877653
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 005125 403 --PQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA--AGRFEDAVKTAQDAAQIDP 478 (713)
Q Consensus 403 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p 478 (713)
...+...+.++...++++.|...++++++++|..... .....+..+..++.. .+.+++|+..|.++.+++|
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s-----re~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS-----RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 2566788999999999999999999999998875432 233455566666554 4569999999988777664
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=8.1e-16 Score=125.88 Aligned_cols=99 Identities=24% Similarity=0.449 Sum_probs=90.5
Q ss_pred ceeecchhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+.+.+.|...+... ..+++.|++ |++|+.+.|.++++.+.++++.|+++|+|+.+.++..++|.++||+++|+
T Consensus 2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~ 81 (105)
T d2ifqa1 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81 (105)
T ss_dssp CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCceEEEEEEEEE
Confidence 55677888899888653 456777999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.++++.|.++++|+++|+++
T Consensus 82 ~G~~v~~~~G~~~~~l~~~i~~~ 104 (105)
T d2ifqa1 82 KGQKVGEFSGANKEKLEATINEL 104 (105)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHhh
Confidence 99999999999999999999876
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.65 E-value=8.8e-16 Score=126.91 Aligned_cols=101 Identities=25% Similarity=0.412 Sum_probs=94.9
Q ss_pred ccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 611 SNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 611 ~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
..+..+.+.++|...+......++.|++ ||+|+++.|.|++++++++++.|+.||+|+.+.++..++|.++||+++|+
T Consensus 8 p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~ 87 (113)
T d1r26a_ 8 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 87 (113)
T ss_dssp SCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred CceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHccccCCCEEEEEE
Confidence 3577788889999999888889998998 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|+.++++.|++++.+.++|+++
T Consensus 88 ~G~~v~~~~G~~~~~l~~~l~~~ 110 (113)
T d1r26a_ 88 SGKMLGHVIGANPGMLRQKLRDI 110 (113)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999999998876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.4e-15 Score=126.18 Aligned_cols=105 Identities=25% Similarity=0.286 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
+.-+...|..++..|+|++|+.+|+++|+.+|.++.+|.++|.+|..+|++++|+..|++++.++|+++.+|+++|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIAK 364 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~~ 364 (713)
.+|++++|+.+|+++++ ++|++...
T Consensus 83 ~~~~~~~A~~~~~~a~~-~~p~~~~~ 107 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLK-HEANNPQL 107 (117)
T ss_dssp HTTCHHHHHHHHHHHHT-TCTTCHHH
T ss_pred HccCHHHHHHHHHHHHH-hCCCCHHH
Confidence 99999999999999999 99998643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-16 Score=170.21 Aligned_cols=220 Identities=8% Similarity=-0.049 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 005125 310 IEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLK 389 (713)
Q Consensus 310 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 389 (713)
-+|+++|++|+++.|+.+.++.++|.+|...|++++| |++++. .+|+....... ........|..+++
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~-~dp~~a~~~~~--------e~~Lw~~~y~~~ie 70 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLV-TDLEYALDKKV--------EQDLWNHAFKNQIT 70 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH-HCHHHHHHHTH--------HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH-cChhhHHHHhH--------HHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999886 899998 89876432211 11111234566778
Q ss_pred HHHHHHHcC--CCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHH
Q 005125 390 ETQNVISFG--ADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAV 467 (713)
Q Consensus 390 ~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 467 (713)
.++..++.. ++........++.++...+.|+.|+..|.+++.+.|+. ...+.++|.++...|++++|+
T Consensus 71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~----------~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC----------RVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------
T ss_pred HHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh----------HHHHHHhHHHHHhCCCHHHHH
Confidence 888777654 33322333445777778899999999999999988753 447788999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 468 KTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 468 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 547 (713)
..+++++..++. .++. ++|.++...|+|++|+.+|++|++++|+++.+|++||.++...|++.+|+
T Consensus 141 ~~~~~al~~~~~--~~~~------------~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~ 206 (497)
T d1ya0a1 141 KPQSSSCSYICQ--HCLV------------HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp --CCHHHHHHHH--HHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCHH--HHHH------------HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 999999987653 2333 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHH
Q 005125 548 EDCTAALIVMPSYSKARL 565 (713)
Q Consensus 548 ~~~~~al~~~p~~~~a~~ 565 (713)
.+|.+++.++|.++.++.
T Consensus 207 ~~y~ral~~~~~~~~a~~ 224 (497)
T d1ya0a1 207 FYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHSSSBCCHHHHH
T ss_pred HHHHHHHhCCCCCHHHHH
Confidence 999999999999998877
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=9e-15 Score=130.49 Aligned_cols=104 Identities=29% Similarity=0.386 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYF 338 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 338 (713)
++.+...|..++..|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|..+|.+|.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhhccccHH
Q 005125 339 RLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 339 ~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
.+|++++|+.+|++++. ++|++..
T Consensus 90 ~~g~~~eA~~~~~~a~~-~~p~~~~ 113 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVK-VKPHDKD 113 (159)
T ss_dssp HTTCHHHHHHHHHHHHH-HSTTCHH
T ss_pred HcCCHHHHHHHHHHHHH-cCCCCHH
Confidence 99999999999999999 9999863
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6e-15 Score=123.77 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
-+...|..++..|++++|+.+|+++++.+|+++.+|. ++|.++..+|++++|+..|.++++++|+++.
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 72 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS------------NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 72 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhh------------cccccccccccccccchhhhhHHHhccchhh
Confidence 4567899999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|+++|.++..+|++++|+..|+++++++|+++.++.
T Consensus 73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 109 (117)
T d1elwa_ 73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 109 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999876654
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.60 E-value=5.1e-15 Score=122.36 Aligned_cols=103 Identities=23% Similarity=0.454 Sum_probs=92.6
Q ss_pred cccceeecchhHHHHHhh----cCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 610 GSNLVFVSSNERFRHFVT----SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 610 g~~i~~~~~~~~~~~~l~----~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
|..+..+.+.++|...+. ....+++.|++ |++|+.+.|.++++++.++ .+.|+.||+|+.+.++..++|.++|
T Consensus 1 gg~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~P 80 (112)
T d1ep7a_ 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80 (112)
T ss_dssp CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred CCCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCC
Confidence 456777888888877663 35677888988 9999999999999999986 5999999999999999999999999
Q ss_pred EEEEEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 683 AFKIYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
|+++|++|+.++++.|.+.++|+++|++|.
T Consensus 81 t~~~~~~G~~v~~~~G~~~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 81 TFHVYKDGVKADDLVGASQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999985
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=9e-15 Score=134.64 Aligned_cols=136 Identities=16% Similarity=0.118 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.++..|..+...|+|++|+..|.+ +.|.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 466789999999999999999986 46677899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccccHH----------HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIA----------KAEALHKHLTKCNEARELKRWNDLLKETQNVISFGAD 400 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 400 (713)
|++++|+..|++++. ..+.+.. .......+++++..+..++++++|++.+..++.+.|+
T Consensus 84 g~~~~A~~~~~kAl~-~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp TCHHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHH-hCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999998 5443310 0001233445555555555555555555555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.5e-13 Score=137.14 Aligned_cols=225 Identities=11% Similarity=-0.023 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q 005125 275 FEDALALYDRAIAINSSKATYRSNKSAALIGL--------------GRQIEALVECKEAIRI-DPCYHRAHHRLAMLYFR 339 (713)
Q Consensus 275 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 339 (713)
.+.+...|++|+...|.++.+|...+..+... +..++|...|+++++. .|.+...|..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46677889999999999999998877755432 3357788888888874 67778888888888888
Q ss_pred cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCH
Q 005125 340 LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRH 419 (713)
Q Consensus 340 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 419 (713)
+|+++.|...|++++. ..|.+. ..+|...+......|++
T Consensus 112 ~~~~~~a~~i~~~~l~-~~~~~~----------------------------------------~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 112 RMKYEKVHSIYNRLLA-IEDIDP----------------------------------------TLVYIQYMKFARRAEGI 150 (308)
T ss_dssp TTCHHHHHHHHHHHHT-SSSSCT----------------------------------------HHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHHH-HhcCCh----------------------------------------HHHHHHHHHHHHHcCCh
Confidence 8888888888888888 666542 24666777888888899
Q ss_pred HHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005125 420 QEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA-AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARL 498 (713)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 498 (713)
+.|..+|+++++..|. ....+...+..... .|+.+.|...|++++...|+++..|. .
T Consensus 151 ~~ar~i~~~al~~~~~----------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~------------~ 208 (308)
T d2onda1 151 KSGRMIFKKAREDART----------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL------------A 208 (308)
T ss_dssp HHHHHHHHHHHTSTTC----------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH------------H
T ss_pred HHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHH------------H
Confidence 9999999999888774 34456666766444 68999999999999999999999887 6
Q ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 499 RGNLLFKASKYKEACYAYSEGLEHEAYN----SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 499 lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
.+..+...|+++.|..+|++++...|.+ ...|..........|+.+.+...++++.++.|+...
T Consensus 209 y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 8888999999999999999999987654 347777777778889999999999999999887643
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.59 E-value=8e-15 Score=121.70 Aligned_cols=101 Identities=19% Similarity=0.367 Sum_probs=90.0
Q ss_pred cceeecchhHHHHHh----hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFV----TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l----~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.+.|...+ ...+..++.|++ |++|+.+.|.|+++++.++++.|+.||.++.+.++..++|+++||++
T Consensus 7 ~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~Pt~~ 86 (114)
T d1xfla_ 7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFM 86 (114)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred cEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceeeeEEEE
Confidence 455566777777655 335567777988 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYS 712 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 712 (713)
+|++|+.++++.|.++++|.++|+++.
T Consensus 87 ~~~~G~~v~~~~G~~~~~l~~~i~k~l 113 (114)
T d1xfla_ 87 FLKEGKILDKVVGAKKDELQSTIAKHL 113 (114)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred EEECCEEEEEEeCcCHHHHHHHHHHhh
Confidence 999999999999999999999999874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=4.8e-15 Score=138.23 Aligned_cols=104 Identities=24% Similarity=0.405 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005125 257 LDPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAML 336 (713)
Q Consensus 257 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 336 (713)
.+++.+...|..++..|+|++|+.+|+++++++|.++.+|.++|.+|..+|++++|+.+|+++++++|+++.+|+++|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 337 YFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 337 ~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
|..+|++++|+.+|++++. ++|++
T Consensus 82 ~~~l~~~~~A~~~~~~al~-l~p~~ 105 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS-LAKEQ 105 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HHHHT
T ss_pred HHHCCCHHHHHHHHHHHHH-hCccc
Confidence 9999999999999999999 88865
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.57 E-value=3.9e-15 Score=123.47 Aligned_cols=102 Identities=24% Similarity=0.404 Sum_probs=89.8
Q ss_pred cceeecchhHHHHHh----hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 612 NLVFVSSNERFRHFV----TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l----~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
.+..+.+.+.|...+ .....+++.|++ |++|+.+.|.|+++++.++++.|+.+|+|+.+.++..++|.++|||+
T Consensus 5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~ 84 (113)
T d1ti3a_ 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFI 84 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEEE
T ss_pred cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeecccceEE
Confidence 455566666666544 334567777998 99999999999999999999999999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhhhC
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLYSS 713 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 713 (713)
+|++|+.++++.|.+++.|.++|++|++
T Consensus 85 ~~k~G~~v~~~~G~~~~~l~~~i~k~as 112 (113)
T d1ti3a_ 85 FLKDGKLVDKTVGADKDGLPTLVAKHAT 112 (113)
T ss_dssp EEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999863
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.6e-14 Score=125.79 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+..+...|..|+..|+|++|+.+|+++++++|++..+|. ++|.++..+|++++|+..|+++++++|++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~~~~~~A~~~~~kal~~~p~~ 77 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG------------NRSLAYLRTECYGYALGDATRAIELDKKY 77 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhh------------hhHHHHHhccccchHHHHHHHHHHHcccc
Confidence 446677899999999999999999999999999999998 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.+|.++|.++..+|++++|+.+|++++.++|++..++.
T Consensus 78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~ 116 (159)
T d1a17a_ 78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 116 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999999999999999999999999999999988765
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.56 E-value=1.5e-14 Score=119.25 Aligned_cols=96 Identities=24% Similarity=0.387 Sum_probs=85.5
Q ss_pred chhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC-cHhhHHHcCCCcccEEEEEECCeE
Q 005125 618 SNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED-HPYIAKSEGVSSIPAFKIYKNGSR 692 (713)
Q Consensus 618 ~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~-~~~~~~~~~v~~~Pt~~~~~~g~~ 692 (713)
+.+.|...+... ..+++.|++ ||+|+.+.|.|++++++++++.|+.+|+++ .+.++..++|.++||+++|++|+.
T Consensus 12 ~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~~k~G~~ 91 (112)
T d1f9ma_ 12 NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 91 (112)
T ss_dssp CTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEE
T ss_pred CHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheeeccCCEEEEEECCEE
Confidence 345688877653 457777888 999999999999999999999999999975 899999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHhhhC
Q 005125 693 VKEIPGHQCELLEKSVKLYSS 713 (713)
Q Consensus 693 ~~~~~g~~~~~~~~~~~~~~~ 713 (713)
++++.|.++++|.++|+++.+
T Consensus 92 v~~~~G~~~~~l~e~i~~~~~ 112 (112)
T d1f9ma_ 92 VGEVTGAKYDKLLEAIQAARS 112 (112)
T ss_dssp EEEEESSCHHHHHHHHHHHHC
T ss_pred EEEEeCCCHHHHHHHHHHccC
Confidence 999999999999999998753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=2.5e-14 Score=133.21 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
++..+...|..|+..|+|++|+.+|++++.++|+++.+|. ++|.+|...|+|++|+.+|++|++++|+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~------------~lg~~y~~~~~~~~Ai~~~~~al~l~p~ 70 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT------------NRALCYLKMQQPEQALADCRRALELDGQ 70 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------hHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence 4567888999999999999999999999999999999998 7999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSK 562 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 562 (713)
++.+|+++|.+|..+|++++|+..|+++++++|++..
T Consensus 71 ~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 9999999999999999999999999999999886543
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.51 E-value=3.3e-14 Score=116.36 Aligned_cols=95 Identities=21% Similarity=0.358 Sum_probs=87.7
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
+.++|.+.+.....+++.|++ |++|+.+.|.+++++..++ .+.|+.||++..+.++..++|.++||+++|++|+.+.
T Consensus 6 t~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G~~~~ 85 (105)
T d1nw2a_ 6 TDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVK 85 (105)
T ss_dssp CTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEE
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEECCEEEE
Confidence 346788888888889999999 9999999999999998885 5999999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhhh
Q 005125 695 EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~~ 712 (713)
++.|. +.+.|+++|+++.
T Consensus 86 ~~~G~~~~~~l~~~i~~~L 104 (105)
T d1nw2a_ 86 QLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EEESCCCHHHHHHHTTTTC
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 99999 8999999998764
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.51 E-value=8.7e-14 Score=114.94 Aligned_cols=101 Identities=26% Similarity=0.367 Sum_probs=89.4
Q ss_pred ccceeecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEE
Q 005125 611 SNLVFVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFK 685 (713)
Q Consensus 611 ~~i~~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~ 685 (713)
..+..+.+.++|...+.. ...+++.|++ |++|+.+.|.+++++..+++ +.++.++.++.+.++..++|.++||++
T Consensus 5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T d1xwaa_ 5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV 84 (111)
T ss_dssp CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEE
Confidence 456677888889877643 3356666888 99999999999999999965 899999999999999999999999999
Q ss_pred EEECCeEeeeecCCCHHHHHHHHHhh
Q 005125 686 IYKNGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 686 ~~~~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|++|+.+.++.|.++++|+++|+++
T Consensus 85 ~~~~G~~v~~~~G~~~~~l~~~I~~~ 110 (111)
T d1xwaa_ 85 FLKNGVKVEEFAGANAKRLEDVIKAN 110 (111)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHT
T ss_pred EEECCEEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999999989999999875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.51 E-value=8.7e-12 Score=121.22 Aligned_cols=227 Identities=18% Similarity=0.195 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAHHRL 333 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 333 (713)
||++++.+|..++..+|+++|+.+|+++.+. ++..+++.||.+|.. ..++..|..+++.+.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 6889999999999999999999999999775 578999999999997 679999999999987644 67888899
Q ss_pred HHHHHH----cCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 005125 334 AMLYFR----LGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQ 409 (713)
Q Consensus 334 a~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 409 (713)
|.++.. ..+.+.|+..++++.. ..+. .....+
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~-~g~~-------------------------------------------~a~~~l 112 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACD-LKYA-------------------------------------------EGCASL 112 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH-TTCH-------------------------------------------HHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhh-hhhh-------------------------------------------hHHHhh
Confidence 988875 4678888888888877 4433 223333
Q ss_pred HHHHHH----ccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q 005125 410 AEALLR----LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNK 481 (713)
Q Consensus 410 a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~ 481 (713)
+..+.. ......|+..+.+.... .....++.+|.+|.. ..+...+..+++.+.+ +.++
T Consensus 113 ~~~~~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~ 178 (265)
T d1ouva_ 113 GGIYHDGKVVTRDFKKAVEYFTKACDL------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDS 178 (265)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCH
T ss_pred cccccCCCcccchhHHHHHHhhhhhcc------------cccchhhhhhhhhccCCCcccccccchhhhhcccc--cccc
Confidence 444432 33455666666654432 234467778888876 4567788888888775 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 005125 482 EVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAA 553 (713)
Q Consensus 482 ~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 553 (713)
.+.. ++|.++.. ..++++|+.+|+++.+. .++.++++||.+|.. ..++++|+.+|++|
T Consensus 179 ~A~~------------~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 179 PGCF------------NAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 244 (265)
T ss_dssp HHHH------------HHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred cccc------------chhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 6665 68888876 67899999999999876 468889999999885 34788899999999
Q ss_pred HHhCCCC
Q 005125 554 LIVMPSY 560 (713)
Q Consensus 554 l~~~p~~ 560 (713)
.+.....
T Consensus 245 a~~g~~~ 251 (265)
T d1ouva_ 245 CKLGAKG 251 (265)
T ss_dssp HHHTCHH
T ss_pred HHCcCHH
Confidence 8876543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=8.5e-14 Score=115.48 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
.++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..+|..+|.+|..+
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 005125 341 GEAEKAVSHYKKSS 354 (713)
Q Consensus 341 g~~~~A~~~~~~al 354 (713)
|++++|++++++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.49 E-value=1.8e-13 Score=112.43 Aligned_cols=100 Identities=15% Similarity=0.275 Sum_probs=87.3
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.++|...+ ...+.+++.|++ |++|+.+.|.+++++..++ .+.|+.||+|+.+.++..++|.++||+++|+
T Consensus 4 V~~l-t~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~ 82 (108)
T d1thxa_ 4 VITI-TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 82 (108)
T ss_dssp EEEC-CGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceEC-CHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEEE
Confidence 3444 446787654 445678888988 9999999999999999885 5899999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhhC
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYSS 713 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~~ 713 (713)
+|+.++++.|. +.+.|.++|+++.+
T Consensus 83 ~g~~v~~~~G~~~~~~l~~~i~~~Ln 108 (108)
T d1thxa_ 83 GEQILDSTEGVISKDKLLSFLDTHLN 108 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence 99999999999 99999999998753
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.49 E-value=1e-13 Score=113.82 Aligned_cols=96 Identities=18% Similarity=0.422 Sum_probs=86.1
Q ss_pred chhHHHHHhhcC-CceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFVTSP-GMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l~~~-~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.++|...+... .++++.|++ |++|+.+.|.+.++...+ +.+.++.||+|..+.+++.++|.++||+++|++|+.+
T Consensus 7 ~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v 86 (107)
T d1dbya_ 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC 86 (107)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred cHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEECCeEE
Confidence 457888876554 467778999 999999999999999887 5789999999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhhC
Q 005125 694 KEIPGH-QCELLEKSVKLYSS 713 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~~ 713 (713)
+++.|. +.+.|.++|+++.+
T Consensus 87 ~~~~G~~~~~~l~~~i~~~L~ 107 (107)
T d1dbya_ 87 ETIIGAVPKATIVQTVEKYLN 107 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHCC
T ss_pred EEEeCCCCHHHHHHHHHHhhC
Confidence 999999 99999999998853
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5e-13 Score=120.13 Aligned_cols=104 Identities=15% Similarity=0.219 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---------------ATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
+..+...|..++..|+|++|+.+|+++++..|.. ..++.++|.+|..+|++++|+.++++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 4568899999999999999999999999997754 2467789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHH
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIA 363 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 363 (713)
|+++.+++.+|.+|..+|++++|+.+|+++++ ++|++..
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-l~P~n~~ 131 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-LYPNNKA 131 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSCHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH-hCCCCHH
Confidence 99999999999999999999999999999999 9999853
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=2.2e-12 Score=128.60 Aligned_cols=228 Identities=8% Similarity=-0.064 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 005125 309 QIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLL 388 (713)
Q Consensus 309 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 388 (713)
...+...|++|+...|.++..|...+..+...++..... +......+..++|.
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~a~ 84 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK---------------------------GDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---------------------------SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHH---------------------------HHHhhcccchHHHH
Confidence 345677899999999999999988776554332211100 00011234556777
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHH
Q 005125 389 KETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVK 468 (713)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 468 (713)
..|+++++..+.....+|...+.++...|++++|...|++++...|.. ...+|...+......|+++.|..
T Consensus 85 ~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~---------~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID---------PTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC---------THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHcCChHHHHH
Confidence 788888875333335788889999999999999999999999987753 23467888999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005125 469 TAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLL-FKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAV 547 (713)
Q Consensus 469 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 547 (713)
.|+++++..|.....+. ..|... ...|+.+.|...|++++...|+++.+|...+..+...|+++.|.
T Consensus 156 i~~~al~~~~~~~~~~~------------~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR 223 (308)
T d2onda1 156 IFKKAREDARTRHHVYV------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHTSTTCCTHHHH------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH------------HHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999988876 456554 44689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChH----HHH------------HHHHHHHHHHHHhCCCCHH
Q 005125 548 EDCTAALIVMPSYSK----ARL------------EAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 548 ~~~~~al~~~p~~~~----a~~------------~~A~~~~~~al~~~p~~~~ 584 (713)
..|++++...|.++. .|. +.+...++++.++.|....
T Consensus 224 ~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 999999998775532 222 5666777777777776643
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.47 E-value=1.6e-13 Score=111.96 Aligned_cols=93 Identities=24% Similarity=0.425 Sum_probs=83.4
Q ss_pred hhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 619 NERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 619 ~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..+|...+.. ..++++.|++ |++|+.+.|.+.++.+.+ +.+.++.||.+..+.++..++|.++||+++|++|+.++
T Consensus 6 d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (104)
T d1fb6a_ 6 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE 85 (104)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEcCeEEE
Confidence 3567776644 4557777988 999999999999999998 45899999999999999999999999999999999999
Q ss_pred eecCC-CHHHHHHHHHhh
Q 005125 695 EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~-~~~~~~~~~~~~ 711 (713)
++.|. +.+.|.++|+++
T Consensus 86 ~~~G~~~~~~l~~~i~~~ 103 (104)
T d1fb6a_ 86 SIIGAVPKSTLTDSIEKY 103 (104)
T ss_dssp EEEECCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 99999 999999999986
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.5e-13 Score=111.67 Aligned_cols=99 Identities=17% Similarity=0.363 Sum_probs=86.2
Q ss_pred ceeecchhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEE
Q 005125 613 LVFVSSNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 613 i~~~~~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~ 688 (713)
+..+ +.+.|...+ ...+.+++.|++ |++|+.+.|.+.+++..+ +.+.++.+|+|+.+.++..++|.++||+++|+
T Consensus 4 v~~l-t~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~ 82 (108)
T d2trxa_ 4 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82 (108)
T ss_dssp EEEC-CTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEE
T ss_pred ceEC-CHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEEE
Confidence 3444 346777644 556677788999 999999999999999876 67999999999999999999999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 689 NGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|+.++++.|. +.+.|.++|++..
T Consensus 83 ~G~~v~~~~G~~~~~~l~~~i~~~L 107 (108)
T d2trxa_ 83 NGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHhc
Confidence 99999999999 9999999999864
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.45 E-value=3.4e-13 Score=111.77 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHH
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSV 528 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 528 (713)
.++.+|.++...|++++|+..|++++..+|+++.+|. .+|.++...|++++|+.+|+++++++|+++.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 85 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWR------------SLGLTQAENEKDGLAIIALNHARMLDPKDIA 85 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhh------------hhhhhhhhhhhHHHhhccccccccccccccc
Confidence 4577899999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005125 529 LLCNRAACRSKLGQYEKAVEDCTAAL 554 (713)
Q Consensus 529 ~~~~la~~~~~~g~~~~A~~~~~~al 554 (713)
+|+++|.+|..+|++++|++.+++.|
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999999976
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.44 E-value=1.9e-12 Score=113.95 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK----------------ATYRSNKSAALIGLGRQIEALVECKEAIRI 322 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (713)
+..+...|..++..|+|.+|+..|++++...+.. ..++.++|.+|..+|++++|+.+|++++++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 3468889999999999999999999999876532 246788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHH
Q 005125 323 DPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKA 365 (713)
Q Consensus 323 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 365 (713)
+|.+..+|+++|.+|..+|++++|+.+|+++++ ++|++....
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~-l~P~n~~~~ 138 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-LNPNNLDIR 138 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence 999999999999999999999999999999999 999986443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.1e-12 Score=117.81 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIK---GVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
+..+...|..++..|+|++|+..|++++...|....... ..........+.++|.+|.++|+|++|+..++++|.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 557778899999999999999999999998776432111 01111224456689999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 524 AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 524 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|+++.+++.+|.+|..+|++++|+.+|+++++++|++..+..
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~ 134 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 134 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999999988765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=1e-12 Score=118.18 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 260 EELKFMGNEAYNKARFEDALALYDRAIAI----------------NSSKATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 260 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
+.+...|..++..|+|++|+..|+++++. +|....++.++|.++..+|++++|+..|+++++++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 107 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 107 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence 34778899999999999999999999864 34556788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|+++.+|+.+|.+|..+|++++|+..|+++++ ++|++.
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~-l~p~n~ 145 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE-IAPEDK 145 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH-hCCCCH
Confidence 99999999999999999999999999999999 999885
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=6.5e-13 Score=113.05 Aligned_cols=102 Identities=27% Similarity=0.438 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYH-------RAHH 331 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 331 (713)
+..+..+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|+|++|+..|+++++++|.+. .++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999999999999999988764 5777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 332 RLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 332 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
.+|.++..++++++|+.+|++++. .++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~-~~~~~ 112 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA-EHRTP 112 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh-cCCCH
Confidence 888899999999999999999998 77654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.42 E-value=2.7e-12 Score=115.10 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSK---------------ATYRSNKSAALIGLGRQIEALVECKEAIRID 323 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (713)
++.+...|..++..|+|.+|+.+|++|+...+.. ..++.++|.||..+|++++|+.++++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 4568899999999999999999999999865432 3467889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccH
Q 005125 324 PCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 324 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
|++..+++++|.+|..+|++++|+.+|.+++. ++|++.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~-l~P~n~ 132 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-VNPQNK 132 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTTCH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCH
Confidence 99999999999999999999999999999999 999985
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.41 E-value=6.4e-12 Score=110.50 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNK----EVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEH 522 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 522 (713)
+..+...|..++..|+|.+|+..|++++...+... ...........+..+.++|.+|+++|++++|+.+|++++++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 45677789999999999999999999998765432 11211222334566779999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 523 EAYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 523 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+|.+..+|+++|.+|..+|++++|+.+|+++++++|++..+..
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~ 139 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 139 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999888766544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.2e-13 Score=111.36 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHhccCCCC--
Q 005125 452 VRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK---ASKYKEACYAYSEGLEHEAYN-- 526 (713)
Q Consensus 452 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~-- 526 (713)
.++..+...+++++|.+.|++++.++|+++.+++ ++|.++.. .+++++|+..|++++..+|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~------------n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~ 71 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH
Confidence 4677888999999999999999999999999998 79999986 456778999999999988755
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
..+++++|.+|..+|++++|+.+|+++++++|++..++.
T Consensus 72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~ 110 (122)
T d1nzna_ 72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 110 (122)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHH
Confidence 568999999999999999999999999999999987665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.1e-12 Score=108.71 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYN 526 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 526 (713)
+..+..+|..++..|+|++|+.+|+++++++|++..++. ++|.++..+|+|++|+..|+++++++|.+
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT------------NQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH------------hHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence 446778999999999999999999999999999999887 79999999999999999999999998876
Q ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 527 S-------VLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 527 ~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
. .+|..+|.++..++++++|+.+|++++..+++.
T Consensus 72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 4 467778888888889999999988888877653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.39 E-value=8.1e-12 Score=111.86 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKE---VIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHE 523 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 523 (713)
+..+...|..++..|+|++|+..|++|+...+.... .............+.++|.+++.+|+|++|+..+++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 456778899999999999999999999986544321 11111122234566789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 524 AYNSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 524 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
|.+..+|+++|.+|..+|++++|+.+|+++++++|++..+..
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 136 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 136 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999999987655
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.5e-12 Score=107.57 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 005125 263 KFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLG---RQIEALVECKEAIRIDPCY--HRAHHRLAMLY 337 (713)
Q Consensus 263 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 337 (713)
-.++..+...+++++|++.|++++.++|.++.+++++|.++...+ ++++|+..|++++..+|.. ..+++.+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788899999999999999999999999999999999998754 5567999999999998765 45899999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccH
Q 005125 338 FRLGEAEKAVSHYKKSSSLANQKDI 362 (713)
Q Consensus 338 ~~~g~~~~A~~~~~~al~~~~p~~~ 362 (713)
..+|++++|+.+|+++++ ++|++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~-~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ-TEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTCH
T ss_pred HHHhhhHHHHHHHHHHHH-hCcCCH
Confidence 999999999999999999 999985
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.36 E-value=1.7e-12 Score=112.83 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=85.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----------cccHHHHHHHHHHHhccCCC
Q 005125 456 VYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----------ASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 456 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~al~~~p~ 525 (713)
.|.+++.|++|+..|+++++++|+++.++. ++|.++.. .+.+++|+..|+++++++|+
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~------------~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~ 73 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLT------------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 73 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHH------------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence 456778899999999999999999999998 57877764 45668999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 526 NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRALFEAQ 593 (713)
Q Consensus 526 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 593 (713)
++.+|+++|.+|..+|++..... .....+++|++.|+++++++|++..+...|....
T Consensus 74 ~~~a~~~lG~~y~~~g~~~~~~~-----------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 74 KDEAVWCIGNAYTSFAFLTPDET-----------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHcccchhhHH-----------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 99999999999988774310000 0111234556666666666666666666555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=3.9e-12 Score=114.19 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHHccCHHHHHHHhhccccCChhhHHhh------hcccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005125 406 YALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKL------FGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPN 479 (713)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 479 (713)
+...|..+...|+|++|+..|.+++...+...... ...+....++.++|.+|.++|++++|+..|+++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 34456677777777777777777765433221100 000123445566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 480 NKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEK 545 (713)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 545 (713)
++.++. .+|.++..+|++++|+..|+++++++|++..++..++.++..+....+
T Consensus 110 ~~~a~~------------~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 110 NTKALY------------RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp CHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH------------hHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666655 466666666666666666666666666666666666666555544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.34 E-value=2.5e-12 Score=111.80 Aligned_cols=75 Identities=21% Similarity=0.139 Sum_probs=68.1
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005125 268 EAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGL----------GRQIEALVECKEAIRIDPCYHRAHHRLAMLY 337 (713)
Q Consensus 268 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 337 (713)
.+.+.+.|++|+..|+++++++|+++.+++++|.++..+ +.+++|+..|+++++++|+++.+|+++|.+|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 456778899999999999999999999999999999854 5568999999999999999999999999999
Q ss_pred HHcCC
Q 005125 338 FRLGE 342 (713)
Q Consensus 338 ~~~g~ 342 (713)
..+|+
T Consensus 86 ~~~g~ 90 (145)
T d1zu2a1 86 TSFAF 90 (145)
T ss_dssp HHHHH
T ss_pred HHccc
Confidence 87764
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.2e-12 Score=108.30 Aligned_cols=99 Identities=8% Similarity=0.095 Sum_probs=81.5
Q ss_pred cceeecchhHHHHHhhcC--CceEEEeec--CchhHHHHHHHHHHHHhCCC-cEEEEEeCCCcHhhHHHcCCCcccEEEE
Q 005125 612 NLVFVSSNERFRHFVTSP--GMAVVLFCS--KAEHKQVLQLMEQVCKRFPS-VNFLKVEVEDHPYIAKSEGVSSIPAFKI 686 (713)
Q Consensus 612 ~i~~~~~~~~~~~~l~~~--~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~-~~~~~v~~d~~~~~~~~~~v~~~Pt~~~ 686 (713)
++..+.+..++.+.+... +.+++.|++ |++|+++.|.+++++.++++ +.|+.||+|+.|+++..|+|.++||++|
T Consensus 3 ~l~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~ 82 (137)
T d1qgva_ 3 MLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMF 82 (137)
T ss_dssp SSCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEE
T ss_pred cccccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEE
Confidence 345566778888887653 366666998 99999999999999999865 8999999999999999999999999999
Q ss_pred EECCeEeeeecC---------C--CHHHHHHHHHh
Q 005125 687 YKNGSRVKEIPG---------H--QCELLEKSVKL 710 (713)
Q Consensus 687 ~~~g~~~~~~~g---------~--~~~~~~~~~~~ 710 (713)
|++|+.+....| . +.+++.+.|+.
T Consensus 83 f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~ 117 (137)
T d1qgva_ 83 FFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET 117 (137)
T ss_dssp EETTEEEEEECC------CCSCCSCHHHHHHHHHH
T ss_pred EeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHH
Confidence 999999865444 2 56666766654
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.3e-12 Score=110.20 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=81.9
Q ss_pred chhHHHHHhhcCCceEE--Eeec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVV--LFCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv--~f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+...|...+...+..++ .|++ |++|+.+.|+|+++++++++ +.+++||+|..+.++..|+|.++||+++|++|+
T Consensus 23 ~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~ 102 (132)
T d2hfda1 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_dssp CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEETTE
T ss_pred ccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEcCc
Confidence 34577777766654433 3776 99999999999999999976 467899999999999999999999999999999
Q ss_pred EeeeecCC-CHHHHHHHHHhhh
Q 005125 692 RVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
.++++.|. +.+.|.++|+...
T Consensus 103 ~v~~~~G~~~~~~l~~~i~~ll 124 (132)
T d2hfda1 103 YRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_dssp EEEEECCCSCHHHHHHHHHHHH
T ss_pred EeeeecCCCCHHHHHHHHHHHh
Confidence 99999999 9999999998753
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.31 E-value=8.9e-13 Score=109.23 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=67.7
Q ss_pred hHHHHHhhcCCceEEE--eec--CchhHHHHHHHHHHHHhCCC--cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 620 ERFRHFVTSPGMAVVL--FCS--KAEHKQVLQLMEQVCKRFPS--VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 620 ~~~~~~l~~~~~~vv~--f~~--cg~c~~~~~~~~~l~~~~p~--~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
..+...+...+..+++ |++ |++|+.+.|+++++++.|++ +.++.||+|..+.++..++|.++||+++|++|+.+
T Consensus 19 ~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v 98 (119)
T d2es7a1 19 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 98 (119)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred cCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEcCeEE
Confidence 4566555555444444 665 99999999999999999975 78899999999999999999999999999999999
Q ss_pred eeecCC-CHHHHHHHHHhhh
Q 005125 694 KEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~~g~-~~~~~~~~~~~~~ 712 (713)
+++.|. +.+.|.++|+...
T Consensus 99 ~~~~G~~~~~~l~~~i~~lL 118 (119)
T d2es7a1 99 GALSGIHPWAELLTLMRSIV 118 (119)
T ss_dssp -CEESCCCHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHh
Confidence 999999 9999999998764
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.30 E-value=1.3e-11 Score=100.93 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCce-EEEeec--CchhHHHHHHHHHHHHh----C-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-
Q 005125 629 PGMA-VVLFCS--KAEHKQVLQLMEQVCKR----F-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH- 699 (713)
Q Consensus 629 ~~~~-vv~f~~--cg~c~~~~~~~~~l~~~----~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 699 (713)
.... ++.|++ ||+|+.+.|.+++++.. + ..+.+..+|.++.++++..++|.++||+++|++|+.+.++.|.
T Consensus 14 ~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~~~~~G~~ 93 (107)
T d1a8la2 14 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAY 93 (107)
T ss_dssp CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEEEESCC
T ss_pred CCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEEEEEECCC
Confidence 4444 445888 99999999999998743 2 4589999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhh
Q 005125 700 QCELLEKSVKLYS 712 (713)
Q Consensus 700 ~~~~~~~~~~~~~ 712 (713)
+.+.+.++|.+..
T Consensus 94 ~~~~~~~~i~~al 106 (107)
T d1a8la2 94 PEKMFLEKLLSAL 106 (107)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=9.2e-12 Score=103.85 Aligned_cols=95 Identities=14% Similarity=0.315 Sum_probs=84.7
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRV 693 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 693 (713)
+.+.|...+...+.+++.|++ |++|+++.|.++++++.+ +.+.|+.||++..+.++..++|.++||+++|++|+..
T Consensus 16 t~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~f~~g~~~ 95 (119)
T d2b5ea4 16 ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 95 (119)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred CHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEEEECCEEe
Confidence 456788888888888888999 999999999999999887 4589999999999999999999999999999999877
Q ss_pred eee--cCC-CHHHHHHHHHhhh
Q 005125 694 KEI--PGH-QCELLEKSVKLYS 712 (713)
Q Consensus 694 ~~~--~g~-~~~~~~~~~~~~~ 712 (713)
..+ .|. +.+.|.+||++++
T Consensus 96 ~~~~y~g~~~~~~l~~fi~k~~ 117 (119)
T d2b5ea4 96 NSIDYEGPRTAEAIVQFMIKQS 117 (119)
T ss_dssp CEEECCSCCSHHHHHHHHHHHT
T ss_pred eeEEecCCCCHHHHHHHHHHhh
Confidence 654 566 9999999999875
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=2.6e-11 Score=112.01 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=87.4
Q ss_pred ccccccceeecchhHHHHHhhcCC---ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSPG---MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSI 681 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~~---~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~ 681 (713)
..||. +..+.+.+.|...+...+ .+|+.|++ |+.|+.+.|.|..++.+||.+.|++|+.+..+.+ ..|+|..+
T Consensus 96 ~~~G~-v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~~~-~~~~i~~l 173 (217)
T d2trcp_ 96 PRYGF-VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAG-DRFSSDVL 173 (217)
T ss_dssp CCCCS-EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHTCS-TTSCGGGC
T ss_pred ccCCe-EEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccchhH-HhCCCCCC
Confidence 35664 666777788988876543 35666888 9999999999999999999999999999987744 68999999
Q ss_pred cEEEEEECCeEeeeecCC--------CHHHHHHHHHhhh
Q 005125 682 PAFKIYKNGSRVKEIPGH--------QCELLEKSVKLYS 712 (713)
Q Consensus 682 Pt~~~~~~g~~~~~~~g~--------~~~~~~~~~~~~~ 712 (713)
|||++|++|+.++++.|. +.+.|+.+|.++.
T Consensus 174 Ptl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g 212 (217)
T d2trcp_ 174 PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred CeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence 999999999999999884 4688999998763
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.24 E-value=5.2e-09 Score=101.01 Aligned_cols=212 Identities=17% Similarity=0.124 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccccHHHHHH
Q 005125 292 KATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEAEKAVSHYKKSSSLANQKDIAKAEA 367 (713)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~ 367 (713)
++.+++.+|..+...+++.+|+++|+++.+. ++..+++.||.+|.. ..++..|..+++.+.. .. +
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-~~--~------ 69 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN--Y------ 69 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-cc--c------
Confidence 5789999999999999999999999999775 578999999999987 6789999999988766 22 1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----ccCHHHHHHHhhccccCChhhHHhhhcc
Q 005125 368 LHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR----LQRHQEAHDSYNKSPKFCLEYYTKLFGL 443 (713)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (713)
+.+...+|.++.. ..+.+.|+..++++....+
T Consensus 70 -----------------------------------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--------- 105 (265)
T d1ouva_ 70 -----------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--------- 105 (265)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------
T ss_pred -----------------------------------cchhhccccccccccccchhhHHHHHHHhhhhhhhh---------
Confidence 2445555666654 4678889999998876543
Q ss_pred cCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHH
Q 005125 444 AGGAYLLIVRAQVYIA----AGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFK----ASKYKEACYA 515 (713)
Q Consensus 444 ~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~ 515 (713)
..+...++..+.. ......|...+.+... +.+...+. .+|..+.. ..+...+..+
T Consensus 106 ---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~------------~L~~~~~~~~~~~~~~~~~~~~ 168 (265)
T d1ouva_ 106 ---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCT------------ILGSLYDAGRGTPKDLKKALAS 168 (265)
T ss_dssp ---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHH------------HHHHHHHHTSSSCCCHHHHHHH
T ss_pred ---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhh------------hhhhhhccCCCcccccccchhh
Confidence 3355666777765 5567888888887665 45555555 58888876 5678889999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH----------------HHHHHHHHHH
Q 005125 516 YSEGLEHEAYNSVLLCNRAACRSK----LGQYEKAVEDCTAALIVMPSYSKARL----------------EAAIQDYEML 575 (713)
Q Consensus 516 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~----------------~~A~~~~~~a 575 (713)
++.+.+ +.++.+++++|.+|.. ..++++|+.+|+++.+.. ++.+.+ .+|+.+|++|
T Consensus 169 ~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 169 YDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 244 (265)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred hhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 998875 4589999999999988 679999999999999874 455554 6688888888
Q ss_pred HHhC
Q 005125 576 IREI 579 (713)
Q Consensus 576 l~~~ 579 (713)
....
T Consensus 245 a~~g 248 (265)
T d1ouva_ 245 CKLG 248 (265)
T ss_dssp HHHT
T ss_pred HHCc
Confidence 7774
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.8e-11 Score=94.99 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005125 258 DPEELKFMGNEAYNKARFEDALALYDRAIAINSSK-------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAH 330 (713)
Q Consensus 258 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 330 (713)
.++.++.+|..++..|+|++|+.+|++|+++.|.+ +.++.++|.++..+|++++|+.+|+++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 46789999999999999999999999999986543 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 005125 331 HRLAMLYFRL 340 (713)
Q Consensus 331 ~~la~~~~~~ 340 (713)
.+++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998765543
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.9e-11 Score=100.09 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=79.7
Q ss_pred eecchhHHHHHhhcC-C-ceEEEeec---------CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCc-------HhhHHH
Q 005125 615 FVSSNERFRHFVTSP-G-MAVVLFCS---------KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDH-------PYIAKS 675 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~-~-~~vv~f~~---------cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~-------~~~~~~ 675 (713)
.+.+.++|...+... + .+++.|++ ||+|+.+.|.++++++.++ .+.|+.||+++. ..++..
T Consensus 5 ~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~ 84 (119)
T d1woua_ 5 SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKN 84 (119)
T ss_dssp EEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHH
T ss_pred EeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHh
Confidence 345667888887654 3 45666875 9999999999999999885 599999999654 458889
Q ss_pred cCCCcccEEEEEECCeEeeeecCCCHHHHHHHHHh
Q 005125 676 EGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 676 ~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
++|.++||+++|++|+++.+..+.+.+.|+.++++
T Consensus 85 ~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~e 119 (119)
T d1woua_ 85 LKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 119 (119)
T ss_dssp HCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred CCeEEEEEEEEEECCeEEeeeecCCHHHHHHHhcC
Confidence 99999999999999999988888899999888864
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=9.4e-11 Score=92.95 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=67.9
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEK 706 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 706 (713)
...+++|++ ||+|+.+.|.+++++..+|.+.+..+|++++++++..++|+++||++ .+|+.+. .|. +.++|.+
T Consensus 16 ~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~--~ng~~~~--~G~~~~~~l~~ 91 (96)
T d1hyua4 16 DFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVF--VNGKEFG--QGRMTLTEIVA 91 (96)
T ss_dssp CEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEE--ETTEEEE--ESCCCHHHHHH
T ss_pred CeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccccccEEE--ECCEEEE--ecCCCHHHHHH
Confidence 345666888 99999999999999999999999999999999999999999999974 4998873 587 9999999
Q ss_pred HHHh
Q 005125 707 SVKL 710 (713)
Q Consensus 707 ~~~~ 710 (713)
+|+.
T Consensus 92 ~les 95 (96)
T d1hyua4 92 KVDT 95 (96)
T ss_dssp HHCC
T ss_pred HHhC
Confidence 8863
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.8e-11 Score=101.33 Aligned_cols=95 Identities=16% Similarity=0.293 Sum_probs=83.8
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC----CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF----PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~----p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+.++|...+.....+++.|++ |++|+.+.|.+.++...+ +.+.++.||++..+.++..++|.++||+++|++|+
T Consensus 13 ~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~ 92 (120)
T d1meka_ 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred CHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEEEEECCe
Confidence 457888888888888889999 999999999999999876 35899999999999999999999999999999997
Q ss_pred Eee--eecCC-CHHHHHHHHHhhh
Q 005125 692 RVK--EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~--~~~g~-~~~~~~~~~~~~~ 712 (713)
.+. ...|. +.+.|.+||++..
T Consensus 93 ~~~~~~~~g~~~~~~l~~fi~~~~ 116 (120)
T d1meka_ 93 TASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTS
T ss_pred EeeeEEecCCCCHHHHHHHHHHhh
Confidence 765 45677 9999999999864
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.15 E-value=1.4e-11 Score=108.79 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC---
Q 005125 449 LLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY--- 525 (713)
Q Consensus 449 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 525 (713)
.+...|..++..|+|++|+..|++++++.|+.++............++.++|.+|..+|+|++|+..+++++.+.|.
T Consensus 11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~ 90 (156)
T d2hr2a1 11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 90 (156)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence 34445889999999999999999999998876542211111112345568999999999999999999999987542
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005125 526 --------NSVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSY 560 (713)
Q Consensus 526 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 560 (713)
...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 24578999999999999999999999999986644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.14 E-value=5.6e-11 Score=104.78 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 005125 262 LKFMGNEAYNKARFEDALALYDRAIAINSSK------------ATYRSNKSAALIGLGRQIEALVECKEAIRIDPC---- 325 (713)
Q Consensus 262 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 325 (713)
++..|..++..|+|++|+..|++++++.|.. +.+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 91 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 91 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence 3344889999999999999999999998764 357899999999999999999999999987442
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccc
Q 005125 326 -------YHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKD 361 (713)
Q Consensus 326 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 361 (713)
...+++++|.+|..+|++++|+.+|+++++ +.|..
T Consensus 92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~-l~~~~ 133 (156)
T d2hr2a1 92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE-MIEER 133 (156)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHC
T ss_pred cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-hhHHh
Confidence 245789999999999999999999999999 76654
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.14 E-value=1.2e-10 Score=96.19 Aligned_cols=94 Identities=11% Similarity=0.150 Sum_probs=79.3
Q ss_pred ecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCc----HhhHHHcCCCcccEEEEEE
Q 005125 616 VSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDH----PYIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 616 ~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~----~~~~~~~~v~~~Pt~~~~~ 688 (713)
..+.+.+...+......+++|++ |++|+.+.|.+.+++..+ +.+.++.++.... ..++..++|.++||+++|+
T Consensus 13 ~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~ 92 (115)
T d1zmaa1 13 VTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT 92 (115)
T ss_dssp ECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred eCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEE
Confidence 34667888888888889999998 999999999999999887 3455555543332 4688899999999999999
Q ss_pred CCeEeeeecCC-CHHHHHHHHH
Q 005125 689 NGSRVKEIPGH-QCELLEKSVK 709 (713)
Q Consensus 689 ~g~~~~~~~g~-~~~~~~~~~~ 709 (713)
+|+.+.++.|. +.++|.++|.
T Consensus 93 ~gk~~~~~~G~~~~~el~~fla 114 (115)
T d1zmaa1 93 DGQINVRCDSSMSAQEIKDFAG 114 (115)
T ss_dssp TTEEEEECCTTCCHHHHHHHHT
T ss_pred CCEEEEEEcCCCCHHHHHHHHc
Confidence 99999999999 9999999984
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.13 E-value=2e-11 Score=95.01 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=68.8
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
...|++|++ |++|+.+.|.++++...++ .+.+..+|.++.++++..++|.++||++++++|+ +.|. +.+.|.
T Consensus 3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l~ 78 (85)
T d1fo5a_ 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEALV 78 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHHH
T ss_pred ceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHHH
Confidence 345777888 9999999999999999986 4899999999999999999999999998877654 5688 899999
Q ss_pred HHHHhh
Q 005125 706 KSVKLY 711 (713)
Q Consensus 706 ~~~~~~ 711 (713)
++|+++
T Consensus 79 ~~i~~~ 84 (85)
T d1fo5a_ 79 EAIKKR 84 (85)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999886
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.09 E-value=9e-11 Score=90.91 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=67.1
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKS 707 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 707 (713)
.+.+|++ |++|+.+.|.++++++.++ .+.++.+|+++.++++..++|.++||+++ +|+ .++.|. +++.|.++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~--~~~~G~~~~~~l~~~ 79 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--VRFVGAPSREELFEA 79 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--EEEECSSCCHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCc--EEEEcCCCHHHHHHH
Confidence 4566888 9999999999999999885 59999999999999999999999999866 554 356788 99999999
Q ss_pred HHhhh
Q 005125 708 VKLYS 712 (713)
Q Consensus 708 ~~~~~ 712 (713)
|++..
T Consensus 80 i~~~l 84 (85)
T d1nhoa_ 80 INDEM 84 (85)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4e-10 Score=89.47 Aligned_cols=90 Identities=8% Similarity=-0.069 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Q 005125 446 GAYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAY 525 (713)
Q Consensus 446 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 525 (713)
.++-++.+|.+++..|+|++|+.+|++|+++.|.+...+. ....++.++|.++.+.|++++|+..|+++++++|+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~-----~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI-----DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS-----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc-----cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 3556789999999999999999999999998665432111 01123347999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 005125 526 NSVLLCNRAACRSKL 540 (713)
Q Consensus 526 ~~~~~~~la~~~~~~ 540 (713)
++.++.+++.+...+
T Consensus 79 ~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 79 HQRANGNLKYFEYIM 93 (95)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999998776554
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.93 E-value=4.3e-09 Score=87.96 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=79.6
Q ss_pred ceeecchhHHHHHhhcCCceEEEeec--Cch------hHHHHHHHHHHHHhC--CCcEEEEEeCCCcHhhHHHcCCCccc
Q 005125 613 LVFVSSNERFRHFVTSPGMAVVLFCS--KAE------HKQVLQLMEQVCKRF--PSVNFLKVEVEDHPYIAKSEGVSSIP 682 (713)
Q Consensus 613 i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~------c~~~~~~~~~l~~~~--p~~~~~~v~~d~~~~~~~~~~v~~~P 682 (713)
+..+ +..+|...+.....+++.|++ ||. |..+.+.++.++... .++.|++||++..+.++..++|.++|
T Consensus 13 V~~L-~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~yP 91 (124)
T d1a8ya1 13 VINV-NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEED 91 (124)
T ss_dssp CEEC-CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCSTT
T ss_pred cEEC-CHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccCC
Confidence 4443 467799988888888999999 985 455556666666544 45999999999999999999999999
Q ss_pred EEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 683 AFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 683 t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
|+.+|++|+.+ +..|. +.+.|.+||.+.
T Consensus 92 Ti~~f~~g~~~-~y~G~r~~~~l~~fi~~~ 120 (124)
T d1a8ya1 92 SIYVFKEDEVI-EYDGEFSADTLVEFLLDV 120 (124)
T ss_dssp CEEEEESSSEE-ECCSCCSHHHHHHHHHHH
T ss_pred cEEEeccCccE-EeeCCCCHHHHHHHHHHh
Confidence 99999999887 57788 999999999765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.90 E-value=2.5e-09 Score=102.12 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=100.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005125 266 GNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEK 345 (713)
Q Consensus 266 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 345 (713)
+...+..|++++|+..|+++++.+|+++.++..++.+|...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 005125 346 AVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADS 401 (713)
Q Consensus 346 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 401 (713)
+...+.+......|.. ...++..+..+...|++++|+..++++.+..|..
T Consensus 83 a~~~~~~~~~~~~p~~------~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 83 FAQGAATAKVLGENEE------LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HTTSCCCEECCCSCHH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhhhhcccCchH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 7665555443123332 2334444555555566666666666666555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=3e-08 Score=88.49 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 005125 259 PEELKFMGNEAYNKARFEDALALYDRAIAINSSKA----------------------TYRSNKSAALIGLGRQIEALVEC 316 (713)
Q Consensus 259 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~ 316 (713)
.+.+...|..+...|++++|+..|.+|+.+.+... .++..++.++..+|++++|+.++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 45789999999999999999999999999876431 57889999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005125 317 KEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSS 355 (713)
Q Consensus 317 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 355 (713)
++++.++|.+..+|..++.+|...|++.+|+..|+++..
T Consensus 91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999855
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.87 E-value=7.6e-09 Score=98.67 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=110.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 005125 301 AALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARE 380 (713)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~ 380 (713)
.-.+..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++ ++|++.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~-l~P~~~------------------ 64 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYL------------------ 64 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGH------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCcH------------------
Confidence 3456789999999999999999999999999999999999999999999999999 999874
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccC-ChhhHHhhhcccCcHHHHHHHHHHHHH
Q 005125 381 LKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKF-CLEYYTKLFGLAGGAYLLIVRAQVYIA 459 (713)
Q Consensus 381 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~ 459 (713)
..+..++.++...+..+++...+.+.... .|+ ....+...+.++..
T Consensus 65 -----------------------~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~----------~~~~~l~~a~~~~~ 111 (264)
T d1zbpa1 65 -----------------------PGASQLRHLVKAAQARKDFAQGAATAKVLGENE----------ELTKSLVSFNLSMV 111 (264)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCH----------HHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHhccccHHHHHHhhhhhcccCch----------HHHHHHHHHHHHHh
Confidence 55666677777777777777766665443 232 23466778999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005125 460 AGRFEDAVKTAQDAAQIDPNNKEVIK 485 (713)
Q Consensus 460 ~g~~~~A~~~~~~al~~~p~~~~~~~ 485 (713)
.|++++|...++++.+..|..+..+.
T Consensus 112 ~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 112 SQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 99999999999999999999876553
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=1.7e-09 Score=92.82 Aligned_cols=92 Identities=13% Similarity=0.241 Sum_probs=73.9
Q ss_pred chhHHHHHhhc-CCceEEEeec--CchhHHHHHHHHHHHHhCC----CcEEEEEeCCCcHhhHHHcCCCcccEEEEEECC
Q 005125 618 SNERFRHFVTS-PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP----SVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNG 690 (713)
Q Consensus 618 ~~~~~~~~l~~-~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p----~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g 690 (713)
+...|...+.. ...+++.|++ |++|+.+.|.|++++..+. .+.++.+|. .+.++..++|.++||+.+|++|
T Consensus 18 ~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--~~~~~~~~~v~~~Ptl~~f~~g 95 (140)
T d2b5ea1 18 VGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--TENDVRGVVIEGYPTIVLYPGG 95 (140)
T ss_dssp CTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--GGCCCSSCCCSSSSEEEEECCT
T ss_pred cCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--cchhccccccccCCeEEEEECC
Confidence 45688887754 4567788988 9999999999999997762 355555554 5678889999999999999999
Q ss_pred eEeeee--cCC-CHHHHHHHHHhh
Q 005125 691 SRVKEI--PGH-QCELLEKSVKLY 711 (713)
Q Consensus 691 ~~~~~~--~g~-~~~~~~~~~~~~ 711 (713)
+.+..+ .|. +.+.|.+||++.
T Consensus 96 ~~~~~~~y~G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 96 KKSESVVYQGSRSLDSLFDFIKEN 119 (140)
T ss_dssp TSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred EEcceeEeCCCCCHHHHHHHHHHc
Confidence 877654 577 999999999875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=1.1e-07 Score=84.75 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHH--HH--HHHHHHHHHHHHHHHHcccHHHHHHHH
Q 005125 447 AYLLIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEV------IKGV--KM--AKAMASARLRGNLLFKASKYKEACYAY 516 (713)
Q Consensus 447 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~--~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~ 516 (713)
...+...|..+...|++++|+..|.+|+.+.+..... |... .. -..+.++.+++.++...|++++|+.++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 4578889999999999999999999999997755311 1111 11 123566778999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHHHHHhCCCCHH
Q 005125 517 SEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAALI-------VMPSYSKARLEAAIQDYEMLIREIPGNEE 584 (713)
Q Consensus 517 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~~A~~~~~~al~~~p~~~~ 584 (713)
+++++.+|.+..+|..++.+|..+|++.+|+..|+++.. +.|.. +-...|+.++.-+|....
T Consensus 91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~------~l~~l~~~il~~~~~~~~ 159 (179)
T d2ff4a2 91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP------TLRALNERILRQQPLDAK 159 (179)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH------HHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH------HHHHHHHHHHhCCCCccC
Confidence 999999999999999999999999999999999999843 45542 234456666776766543
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.76 E-value=1.7e-09 Score=89.49 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=70.5
Q ss_pred chhHHHHHh-hcCCceEEEeec--CchhHHHHHHHHHHHHhCCCc---EEEEEeCCCcHhhHHHcCCCcccEEEEEECCe
Q 005125 618 SNERFRHFV-TSPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSV---NFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGS 691 (713)
Q Consensus 618 ~~~~~~~~l-~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~---~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~ 691 (713)
+.++|...+ .....++|.|++ |++|+.+.|.++++++.+... .+..++.++.......++|.++||+.+|++|+
T Consensus 8 t~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~~f~~g~ 87 (116)
T d2djja1 8 VAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKLYPAGA 87 (116)
T ss_dssp CTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEEEECSSC
T ss_pred ccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEEEEECCc
Confidence 345777765 445677888999 999999999999999877431 12333333344455678999999999999887
Q ss_pred Eee--eecCC-CHHHHHHHHHhhh
Q 005125 692 RVK--EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 692 ~~~--~~~g~-~~~~~~~~~~~~~ 712 (713)
... ...|. +.+.|.+||++..
T Consensus 88 ~~~~~~~~g~~~~~~l~~fi~~~~ 111 (116)
T d2djja1 88 KGQPVTYSGSRTVEDLIKFIAENG 111 (116)
T ss_dssp TTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred cCceEEecCCCCHHHHHHHHHHcc
Confidence 543 46677 9999999998764
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=1.7e-08 Score=83.40 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=73.9
Q ss_pred eecchhHHHHHhhc--CCceEEEeec--CchhHHHHHHH---HHHHHhCCCcEEEEEeCCC----cHhhHHHcCCCcccE
Q 005125 615 FVSSNERFRHFVTS--PGMAVVLFCS--KAEHKQVLQLM---EQVCKRFPSVNFLKVEVED----HPYIAKSEGVSSIPA 683 (713)
Q Consensus 615 ~~~~~~~~~~~l~~--~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~p~~~~~~v~~d~----~~~~~~~~~v~~~Pt 683 (713)
.+.+.+++...+.. ...+++.|++ |++|+.+.|.+ .++.+...++.++.++++. ...++..++|.++||
T Consensus 6 ~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 85 (117)
T d2fwha1 6 QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 85 (117)
T ss_dssp ECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred EecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceE
Confidence 34555666665533 3467777999 99999999987 5566666777888887654 456889999999999
Q ss_pred EEEEE-CCeEe--eeecCC-CHHHHHHHHHh
Q 005125 684 FKIYK-NGSRV--KEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 684 ~~~~~-~g~~~--~~~~g~-~~~~~~~~~~~ 710 (713)
+++|. +|+.+ .++.|. +++.+.++|++
T Consensus 86 ~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 86 ILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred EEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 99994 68776 468898 99999999975
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.66 E-value=4.7e-08 Score=81.07 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=74.9
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHh----CCCcEEEEEeCCC-----cHhhHHHcCC--CcccEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKR----FPSVNFLKVEVED-----HPYIAKSEGV--SSIPAF 684 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~----~p~~~~~~v~~d~-----~~~~~~~~~v--~~~Pt~ 684 (713)
+..+|...+.....++|.|++ |++|++ |.|.++++. .+.+.+++||+++ ++.++..++| .++||+
T Consensus 8 ~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi 85 (122)
T d2c0ga2 8 DELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSI 85 (122)
T ss_dssp CTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEE
T ss_pred ChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcE
Confidence 346799999888888899998 999994 778777754 4678999998754 5889999988 579999
Q ss_pred EEEECCeEee---eecCC-CHHHHHHHHHhhh
Q 005125 685 KIYKNGSRVK---EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 685 ~~~~~g~~~~---~~~g~-~~~~~~~~~~~~~ 712 (713)
.+|++|.... ...|. +.+.|.+||++..
T Consensus 86 ~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~ 117 (122)
T d2c0ga2 86 FLFKGNADEYVQLPSHVDVTLDNLKAFVSANT 117 (122)
T ss_dssp EEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred EEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence 9999886443 34455 9999999999864
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=3.8e-08 Score=77.90 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHH
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLE 705 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 705 (713)
.-++|++|+. |++|.++.++|+++...|+ ..++.+|+++.+.+.+.|+++ +|++ +.+|+.+ +.|. +.+.|+
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl--~idg~~~--~~g~~d~~~L~ 88 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVF--HLNGQFL--MMHRVNTSKLE 88 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEE--EESSSEE--EESSCCHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhccc-CCce--eecCceE--EeCCCCHHHHH
Confidence 3457888888 9999999999999988876 678899999999999999987 9965 4588776 4465 999999
Q ss_pred HHHHhhh
Q 005125 706 KSVKLYS 712 (713)
Q Consensus 706 ~~~~~~~ 712 (713)
++|++..
T Consensus 89 ~~L~~l~ 95 (100)
T d1wjka_ 89 KQLRKLS 95 (100)
T ss_dssp HHHHSSS
T ss_pred HHHHHHh
Confidence 9998753
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=8.7e-08 Score=79.41 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=68.0
Q ss_pred chhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHHhC---CC-----cEEEEEeCCCcHhhHHHcC--CCcccEEE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PS-----VNFLKVEVEDHPYIAKSEG--VSSIPAFK 685 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~-----~~~~~v~~d~~~~~~~~~~--v~~~Pt~~ 685 (713)
+...|...+.....++|.|++ |+.|.. |.+.++++.+ .+ +.+..||++..+.++..++ |.++||+.
T Consensus 10 ~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~ 87 (122)
T d1g7ea_ 10 DTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFY 87 (122)
T ss_dssp SHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEEE
T ss_pred CHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeEE
Confidence 456899999888888888977 655542 4555555444 23 3444557777889998864 78999999
Q ss_pred EEECCeEee--eecCC-CHHHHHHHHHhh
Q 005125 686 IYKNGSRVK--EIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 686 ~~~~g~~~~--~~~g~-~~~~~~~~~~~~ 711 (713)
+|++|.... ...|. +.+.|.+||++.
T Consensus 88 ~f~~G~~~~~~~y~G~rt~~~l~~fi~~~ 116 (122)
T d1g7ea_ 88 LFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116 (122)
T ss_dssp EEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred EEecCcccCceecCCCCCHHHHHHHHHhc
Confidence 999997543 56788 999999999875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=4.6e-06 Score=66.97 Aligned_cols=78 Identities=6% Similarity=-0.116 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005125 259 PEELKFMGNEAYNK---ARFEDALALYDRAIAINSSK-ATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLA 334 (713)
Q Consensus 259 ~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 334 (713)
+++.|..|.++.+. .+.++|+.+++.+++.+|.+ .++++++|.+|..+|+|++|..+++++|+++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 56778888888754 45678888888888888866 478888888888889999999999999988888887766554
Q ss_pred HH
Q 005125 335 ML 336 (713)
Q Consensus 335 ~~ 336 (713)
.+
T Consensus 115 ~I 116 (124)
T d2pqrb1 115 MV 116 (124)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.09 E-value=4.9e-06 Score=66.79 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=60.4
Q ss_pred HHHHHHHHc---ccHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 498 LRGNLLFKA---SKYKEACYAYSEGLEHEAYN-SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 498 ~lg~~~~~~---g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.|+++.+. .+.++|+..++.++..+|.+ .+++++||..|.++|+|++|..+++++|+++|++..+..
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 678888754 56789999999999999876 489999999999999999999999999999999987764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.00 E-value=4.4e-05 Score=63.76 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=69.0
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 005125 271 NKARFEDALALYDRAIAINSSKATYRSNKSAALIG----LGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGE 342 (713)
Q Consensus 271 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 342 (713)
...++++|+.+|+++.+. +++.+++.+|.+|.. ..++.+|+.+|+++.+. .++.+.+.||.+|.. ..+
T Consensus 35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence 346788999999998775 578899999999886 56789999999999875 468899999999987 568
Q ss_pred HHHHHHHHHHHhh
Q 005125 343 AEKAVSHYKKSSS 355 (713)
Q Consensus 343 ~~~A~~~~~~al~ 355 (713)
+++|+.+|+++.+
T Consensus 111 ~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 111 EKQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=1.5e-05 Score=67.11 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=62.2
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC---------------------CcHhhHHHcCCCcccEE
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE---------------------DHPYIAKSEGVSSIPAF 684 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d---------------------~~~~~~~~~~v~~~Pt~ 684 (713)
....+++.||+ |++|+...|.+.++......+..+.++.+ ....+...++|.++|++
T Consensus 19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 98 (136)
T d1z5ye1 19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPET 98 (136)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBSEE
T ss_pred CCCEEEEEEEcCcCCCcCccccchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcceE
Confidence 45577777999 99999999999999876544444444332 12246778899999977
Q ss_pred EEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 685 KIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 685 ~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+++ ++|+.+.+..|. +.+.+.+.|++.
T Consensus 99 ~liD~~G~i~~~~~G~~~~~~l~~~i~~l 127 (136)
T d1z5ye1 99 FLIDGNGIIRYRHAGDLNPRVWEEEIKPL 127 (136)
T ss_dssp EEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence 776 579999999998 888777766543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.96 E-value=4.2e-05 Score=63.91 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005125 273 ARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFR----LGEAEKAVS 348 (713)
Q Consensus 273 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 348 (713)
.|+++|+.+|+++.+.. ++.+++.++. ....++++|+.+|+++.+. .++.+.+.||.+|.. ..++++|+.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 47899999999998874 5566777764 3457899999999999875 578999999999886 467889999
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH----ccCHHHHHH
Q 005125 349 HYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR----LQRHQEAHD 424 (713)
Q Consensus 349 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~ 424 (713)
+|+++.+ ... +.+.+.+|.+|.. ..++++|+.
T Consensus 81 ~~~~aa~-~g~-------------------------------------------~~a~~~Lg~~y~~G~gv~~d~~~A~~ 116 (133)
T d1klxa_ 81 YYSKACG-LND-------------------------------------------QDGCLILGYKQYAGKGVVKNEKQAVK 116 (133)
T ss_dssp HHHHHHH-TTC-------------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHhhhhc-cCc-------------------------------------------chHHHHHHHHHHcCCccCCCHHHHHH
Confidence 9998877 322 2556667777776 457888888
Q ss_pred HhhccccCC
Q 005125 425 SYNKSPKFC 433 (713)
Q Consensus 425 ~~~~al~~~ 433 (713)
+|++|.+..
T Consensus 117 ~~~~Aa~~G 125 (133)
T d1klxa_ 117 TFEKACRLG 125 (133)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888876543
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.3e-05 Score=67.32 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=68.3
Q ss_pred ccccccceeecchhHHHHHhhcCCceEEEeec--CchhHHHHHHHHHHHH---hCCCcEEEEEeCCCcHhhHHHc-CCCc
Q 005125 607 MKFGSNLVFVSSNERFRHFVTSPGMAVVLFCS--KAEHKQVLQLMEQVCK---RFPSVNFLKVEVEDHPYIAKSE-GVSS 680 (713)
Q Consensus 607 ~~~g~~i~~~~~~~~~~~~l~~~~~~vv~f~~--cg~c~~~~~~~~~l~~---~~p~~~~~~v~~d~~~~~~~~~-~v~~ 680 (713)
.|||+.+....-.+.+........++++.|++ |++|+.+.|.+.+..+ ....++.+.||.+..+.+...+ ....
T Consensus 3 ~~~~~~i~w~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~ 82 (135)
T d1sena_ 3 KGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGY 82 (135)
T ss_dssp TTSCTTSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSC
T ss_pred CCCCCceeeeEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhccc
Confidence 47888888764444455556667888888999 9999999998865443 2256888999988777666543 4456
Q ss_pred ccEEEEEE-CCeEeeeecC
Q 005125 681 IPAFKIYK-NGSRVKEIPG 698 (713)
Q Consensus 681 ~Pt~~~~~-~g~~~~~~~g 698 (713)
+|+++++. +|+.+.++.|
T Consensus 83 ~Pt~~~~d~~G~~~~~~~g 101 (135)
T d1sena_ 83 IPRILFLDPSGKVHPEIIN 101 (135)
T ss_dssp SSEEEEECTTSCBCTTCCC
T ss_pred ceeEEEECCCCeEEEEecC
Confidence 89999885 6888888877
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=4.4e-05 Score=63.81 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=65.7
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc----------------------HhhHHHcCCCcccEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH----------------------PYIAKSEGVSSIPAF 684 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~----------------------~~~~~~~~v~~~Pt~ 684 (713)
.+.+++.|++ |++|+...|.+.++.+.++++.++.|+.++. ..++..++|..+|++
T Consensus 24 Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~ 103 (134)
T d1lu4a_ 24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103 (134)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCEE
Confidence 4566777888 9999999999999999999999998887642 246677899999998
Q ss_pred EEEE-CCeE--eeeecCC-CHHHHHHHHHh
Q 005125 685 KIYK-NGSR--VKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 685 ~~~~-~g~~--~~~~~g~-~~~~~~~~~~~ 710 (713)
.++. +|+. +....|. +.++|.+.|++
T Consensus 104 ~lid~~G~i~~v~~~~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 104 VFYRADGTSTFVNNPTAAMSQDELSGRVAA 133 (134)
T ss_dssp EEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred EEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence 8885 5754 4455666 99999999875
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=5.6e-05 Score=63.16 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=64.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc-----------------------HhhHHHcCCCcccE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH-----------------------PYIAKSEGVSSIPA 683 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~-----------------------~~~~~~~~v~~~Pt 683 (713)
...+++.|++ |++|+...|.+.++.++++++.++.|..++. ..+...+++.++|+
T Consensus 25 Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~ 104 (134)
T d1zzoa1 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPA 104 (134)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSE
T ss_pred CCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccCe
Confidence 3567777888 9999999999999999998888777766532 25666778999999
Q ss_pred EEEEE-CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 FKIYK-NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
++++. +|. +..+.|. +.++|.+.|++.
T Consensus 105 ~~iiD~~G~-i~~~~g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 105 YAFVDPHGN-VDVVRGRMSQDELTRRVTAL 133 (134)
T ss_dssp EEEECTTCC-EEEEESCCCHHHHHHHHHHH
T ss_pred EEEECCCCe-EEEEECCCCHHHHHHHHHhh
Confidence 98885 566 4456677 999999999875
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=3.2e-05 Score=65.39 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=64.0
Q ss_pred HhhcCCceEEEeec--CchhHHHHHHH---HHHHHhC-CCcEEEEEeCCCc--HhhHHHcCCCcccEEEEEE--CCeEee
Q 005125 625 FVTSPGMAVVLFCS--KAEHKQVLQLM---EQVCKRF-PSVNFLKVEVEDH--PYIAKSEGVSSIPAFKIYK--NGSRVK 694 (713)
Q Consensus 625 ~l~~~~~~vv~f~~--cg~c~~~~~~~---~~l~~~~-p~~~~~~v~~d~~--~~~~~~~~v~~~Pt~~~~~--~g~~~~ 694 (713)
........+|.|++ |++|+.+.+.+ +.+.+.. ...+++.|+.+.. ..++..++|.++|++.++. .|+.+.
T Consensus 38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~ 117 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV 117 (147)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEec
Confidence 33446677777887 99999987643 2333222 3578889988765 6789999999999999985 588877
Q ss_pred eecCCCHHHHHHHHHhh
Q 005125 695 EIPGHQCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~~~~~~~~~~~~~ 711 (713)
...+.+++++...|+++
T Consensus 118 ~~~~~~~~~fl~~L~~f 134 (147)
T d2dlxa1 118 EWHQLDVSSFLDQVTGF 134 (147)
T ss_dssp EESSCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 66666888887777665
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=97.71 E-value=6.8e-05 Score=63.48 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCC----------------------------CcHhhHHHc
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVE----------------------------DHPYIAKSE 676 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d----------------------------~~~~~~~~~ 676 (713)
....++.|++ |++|+...|.+.++.+++ .++.++.|..+ ....++..+
T Consensus 23 gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 102 (143)
T d2fy6a1 23 DKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSL 102 (143)
T ss_dssp TSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHT
T ss_pred CCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHHc
Confidence 4566777888 999999999999988765 34666555432 122567889
Q ss_pred CCCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHhhh
Q 005125 677 GVSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 677 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 712 (713)
+|.++|+++++ ++|+.+....|. +.+++.++|++..
T Consensus 103 ~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~ 140 (143)
T d2fy6a1 103 NISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN 140 (143)
T ss_dssp TCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred CCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence 99999999888 689999999999 9999999998753
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=97.59 E-value=0.00015 Score=61.24 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=64.5
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEeCCCc---------------------------HhhHHHcC
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVEVEDH---------------------------PYIAKSEG 677 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~~d~~---------------------------~~~~~~~~ 677 (713)
....+++.|++ |++|+...|.+.++.+.+. .+.++.|..+.. ..+...++
T Consensus 28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 107 (143)
T d2b5xa1 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (143)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcC
Confidence 34566667888 9999999999999988874 477777755321 13566778
Q ss_pred CCcccEEEEE-ECCeEeeeecCC-CHHHHHHHHHh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
|..+|++.++ ++|..+....|. +.+.|++.|++
T Consensus 108 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~ 142 (143)
T d2b5xa1 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142 (143)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred CCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence 8899987777 679999999999 88999998876
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.47 E-value=0.00016 Score=61.17 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=61.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC-----------------------CcHhhHHHcCCCcccEE
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE-----------------------DHPYIAKSEGVSSIPAF 684 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d-----------------------~~~~~~~~~~v~~~Pt~ 684 (713)
..+++.||+ |++|+...|.+.++.+.++ +.++-|..+ ....+...|+|.++|++
T Consensus 32 K~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 110 (144)
T d1knga_ 32 KVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPET 110 (144)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEE
T ss_pred CEEEEEeeccccccccccCchhhhhhhccC-ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccceE
Confidence 456677888 9999999999999887664 333333221 23357888899999988
Q ss_pred EEEE-CCeEeeeecCC-CHHHHHHHHHhh
Q 005125 685 KIYK-NGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 685 ~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+++- +|+.+....|. +.+.|++.|++.
T Consensus 111 ~liD~~G~i~~~~~G~~~~~~l~~~i~~~ 139 (144)
T d1knga_ 111 FVVGREGTIVYKLVGPITPDNLRSVLLPQ 139 (144)
T ss_dssp EEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred EEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 7774 79999999999 888888877653
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=0.00083 Score=55.92 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=63.6
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC--CcEEEEEeCCCcH----------------------hhHHHcCCCcccE
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP--SVNFLKVEVEDHP----------------------YIAKSEGVSSIPA 683 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p--~~~~~~v~~d~~~----------------------~~~~~~~v~~~Pt 683 (713)
...++.|++ |++|....+.+.++.+.++ ++.++.++.++.+ .+...++|..+|+
T Consensus 26 k~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 105 (137)
T d1st9a_ 26 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPT 105 (137)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSSCE
T ss_pred CEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccccce
Confidence 456667777 9999999999999988874 4777777654422 4556678889998
Q ss_pred EEEE-ECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 684 FKIY-KNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 684 ~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+.++ ++|..+....|. +.+.+.+.|+..
T Consensus 106 ~~liD~~G~i~~~~~G~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 106 TFLINPEGKVVKVVTGTMTESMIHDYMNLI 135 (137)
T ss_dssp EEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence 8777 479999999999 888888887654
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.02 E-value=0.00062 Score=58.84 Aligned_cols=71 Identities=6% Similarity=0.025 Sum_probs=56.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHc---CCCcccEEEEEEC-CeEeeeecCC
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSE---GVSSIPAFKIYKN-GSRVKEIPGH 699 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~---~v~~~Pt~~~~~~-g~~~~~~~g~ 699 (713)
....++.|++ ||+|+...|.+.++.+.+|++.+..|++++.+.....+ +...+|++++... +.....+.+.
T Consensus 54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~ 130 (166)
T d1z6na1 54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVER 130 (166)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESS
T ss_pred CCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCccchhccccccc
Confidence 3455667888 99999999999999999999999999999999888887 4446787776653 4555555544
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00027 Score=60.45 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=57.1
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeC-----------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEV----------------------------------------- 666 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~----------------------------------------- 666 (713)
..+|++|+- |+.|+.+.|.+.++.+....+.+....+
T Consensus 27 k~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (156)
T d1eeja1 27 KHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVD 106 (156)
T ss_dssp CEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCC
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcch
Confidence 446677876 9999999999999877654444443332
Q ss_pred -CCcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 667 -EDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 667 -d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
+....+++.+||+++|||+ +.+|+. ++|+ +.+.|.++|++.
T Consensus 107 i~~~~~la~~lgv~GTPt~~-~~nG~~---v~G~~~~e~l~~~i~~~ 149 (156)
T d1eeja1 107 IADHYALGVQLGVSGTPAVV-LSNGTL---VPGYQPPKEMKEFLDEH 149 (156)
T ss_dssp HHHHHHHHHHHTCCSSSEEE-CTTSCE---EESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCCEEE-EeCCeE---ecCCCCHHHHHHHHHHH
Confidence 1233577788999999864 457854 6799 999999999875
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.89 E-value=0.00033 Score=59.39 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=58.2
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCC----------------------------------------
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVE---------------------------------------- 667 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d---------------------------------------- 667 (713)
..+|++|.- |+.|+.+.+.++++....+.+.++.....
T Consensus 27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~ 106 (150)
T d1t3ba1 27 KHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNI 106 (150)
T ss_dssp SEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSH
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhhH
Confidence 345666776 99999999999999887655555443221
Q ss_pred --CcHhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHhh
Q 005125 668 --DHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKLY 711 (713)
Q Consensus 668 --~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 711 (713)
.+..+++.+||+++|||++ .+|+ .++|+ +.++|+++|++.
T Consensus 107 i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~~ 149 (150)
T d1t3ba1 107 VKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET 149 (150)
T ss_dssp HHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHhh
Confidence 2345778899999998763 5674 57999 999999999863
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.047 Score=55.13 Aligned_cols=262 Identities=13% Similarity=-0.042 Sum_probs=144.1
Q ss_pred cCCCCHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Q 005125 254 LNKLDPEELK---FMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRA- 329 (713)
Q Consensus 254 ~~~~~~~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 329 (713)
..|+.|..-. ..-..+...+++.+.+..|. ..|.+....+.++.++...|+..+|...+..+.......+..
T Consensus 64 ~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c 139 (450)
T d1qsaa1 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSP----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNAC 139 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHH
T ss_pred HCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHH
Confidence 4555554322 22344556677766554442 356777777888888888898888888777776543333322
Q ss_pred -----------------HHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005125 330 -----------------HHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQ 392 (713)
Q Consensus 330 -----------------~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 392 (713)
+..........|++..|...+.. +.++........ .. +...-.. +.
T Consensus 140 ~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~----l~~~~~~~~~a~---~~---l~~~p~~-------~~ 202 (450)
T d1qsaa1 140 DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAI---IS---LANNPNT-------VL 202 (450)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHH---HH---HHHCGGG-------HH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh----CChhHHHHHHHH---HH---HHhChHh-------HH
Confidence 22333444444555555444332 222221100000 00 0000001 11
Q ss_pred HHHHcCCCChH-HHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 393 NVISFGADSAP-QVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTAQ 471 (713)
Q Consensus 393 ~al~~~p~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 471 (713)
......+.... ..+...+..-....+.+.|...+.......+-... ........++..+...+..+.|...+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~a~~~~~ 276 (450)
T d1qsaa1 203 TFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED------QIQELRDIVAWRLMGNDVTDEQAKWRD 276 (450)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH------HHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHH------HHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 11222233221 22333445555567888888887765332211111 011223334444445677788888887
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005125 472 DAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCT 551 (713)
Q Consensus 472 ~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 551 (713)
.......+...... .++ .....+++..+...+...-......+...+.+|..+..+|+.++|...|.
T Consensus 277 ~~~~~~~~~~~~~w------------~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 277 DAIMRSQSTSLIER------------RVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp HHHHTCCCHHHHHH------------HHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccccchHHHHH------------HHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 77655444333222 233 34567899999998887654444557888999999999999999999999
Q ss_pred HHHH
Q 005125 552 AALI 555 (713)
Q Consensus 552 ~al~ 555 (713)
.+..
T Consensus 344 ~~a~ 347 (450)
T d1qsaa1 344 QLMQ 347 (450)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9875
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=96.74 E-value=0.0024 Score=53.39 Aligned_cols=64 Identities=11% Similarity=0.230 Sum_probs=48.3
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcH------------------------hhHHHcCCCc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHP------------------------YIAKSEGVSS 680 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~------------------------~~~~~~~v~~ 680 (713)
..+++.|++ |++|+...|.+.++.+++ .++.++.|..|+.+ .+...|+|.+
T Consensus 29 K~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v~~ 108 (144)
T d1i5ga_ 29 KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKS 108 (144)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCS
T ss_pred CEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCCCC
Confidence 445556999 999999999999987766 35778888777432 2566789999
Q ss_pred ccEEEEEE-C-CeEe
Q 005125 681 IPAFKIYK-N-GSRV 693 (713)
Q Consensus 681 ~Pt~~~~~-~-g~~~ 693 (713)
+|+++++. + |+.+
T Consensus 109 iPt~~lid~~~G~vi 123 (144)
T d1i5ga_ 109 IPTLVGVEADSGNII 123 (144)
T ss_dssp SSEEEEEETTTCCEE
T ss_pred cCEEEEEeCCCCEEE
Confidence 99988885 4 5554
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=96.59 E-value=0.0033 Score=52.56 Aligned_cols=65 Identities=12% Similarity=0.291 Sum_probs=49.4
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCcH------------------------hhHHHcCCCc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDHP------------------------YIAKSEGVSS 680 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~~------------------------~~~~~~~v~~ 680 (713)
..+++.|++ |++|+...|.+.++.++++ ++.++.|..|+.. .+...|+|.+
T Consensus 29 K~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~~ 108 (144)
T d1o73a_ 29 KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVES 108 (144)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCS
T ss_pred CEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCCCc
Confidence 455666888 9999999999999987762 4788888776532 2566789999
Q ss_pred ccEEEEEE-C-CeEee
Q 005125 681 IPAFKIYK-N-GSRVK 694 (713)
Q Consensus 681 ~Pt~~~~~-~-g~~~~ 694 (713)
+|+++++- + |..+.
T Consensus 109 ~Pt~~lID~~~G~Ii~ 124 (144)
T d1o73a_ 109 IPTLITINADTGAIIG 124 (144)
T ss_dssp SSEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCEEEe
Confidence 99998886 4 55544
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.39 E-value=0.011 Score=46.76 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=58.9
Q ss_pred ceEEEeec---CchhHHHHHHHHHHHHhCCCcEEEEEeCCC--cHhhHHHcCCCcccEEEEEECCeEee-eecCC-CHHH
Q 005125 631 MAVVLFCS---KAEHKQVLQLMEQVCKRFPSVNFLKVEVED--HPYIAKSEGVSSIPAFKIYKNGSRVK-EIPGH-QCEL 703 (713)
Q Consensus 631 ~~vv~f~~---cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~--~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~-~~~~ 703 (713)
..+++|.. |..|..+..+++.++..-+.+.+...+.+. .+++++.++|...|+|.++.+|+..+ ++.|. .-.+
T Consensus 24 V~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~GhE 103 (119)
T d1a8la1 24 VKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHE 103 (119)
T ss_dssp EEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCTTH
T ss_pred EEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccCchh
Confidence 34555653 999999999999999887877777776664 57899999999999999999876532 45555 3355
Q ss_pred HHHHHH
Q 005125 704 LEKSVK 709 (713)
Q Consensus 704 ~~~~~~ 709 (713)
+..+|.
T Consensus 104 f~Slil 109 (119)
T d1a8la1 104 FAAFLE 109 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.30 E-value=0.0079 Score=43.35 Aligned_cols=67 Identities=10% Similarity=0.208 Sum_probs=49.2
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhH---HHcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIA---KSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
.|++|.. |+.|..+..+|.+. ++.|..+++++.++.. ...|..++|.+ |.+|+. +.|+++++|.+
T Consensus 2 ~v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i--~i~g~~---igGf~~d~l~~ 71 (74)
T d1r7ha_ 2 SITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVV--EVDGEH---WSGFRPERIKQ 71 (74)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEE--EETTEE---EESCCHHHHHH
T ss_pred EEEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEE--EECCEE---EeCCCHhHHHH
Confidence 4667776 99999999988653 4667778888766543 45689999964 568854 56778898887
Q ss_pred HH
Q 005125 707 SV 708 (713)
Q Consensus 707 ~~ 708 (713)
++
T Consensus 72 L~ 73 (74)
T d1r7ha_ 72 LQ 73 (74)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0064 Score=44.10 Aligned_cols=65 Identities=14% Similarity=0.334 Sum_probs=47.9
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH---HcCCCcccEEEEEECCeEeeeecCCCHHHHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK---SEGVSSIPAFKIYKNGSRVKEIPGHQCELLEK 706 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 706 (713)
.+++|.. |+.|..+..+|.+. ++.|..+|++..++... ..|.+++|.+. .+|+. +.|++++.|.+
T Consensus 2 ki~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~~~~---i~Gf~~d~i~~ 71 (76)
T d1h75a_ 2 RITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS---WSGFRPDMINR 71 (76)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE---EESCCHHHHGG
T ss_pred EEEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEE--ECCEE---EECCCHHHHHH
Confidence 3666776 99999999988653 46778888888776544 45899999754 47744 56788888864
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0059 Score=45.47 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=51.2
Q ss_pred eEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH----hhHHHc--CCCcccEEEEEECCeEeeeecCCCHHH
Q 005125 632 AVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP----YIAKSE--GVSSIPAFKIYKNGSRVKEIPGHQCEL 703 (713)
Q Consensus 632 ~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~----~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 703 (713)
.+++|.. |+.|..+..+|.++...+.++.+..++++..+ .+.... ++.++|. +|.+|+.+ .|. ++
T Consensus 2 kvviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPq--Ifi~g~~I---GG~--~e 74 (85)
T d1egoa_ 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQ--IFVDQQHI---GGY--TD 74 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCE--EEETTEEE---ESS--HH
T ss_pred EEEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCE--EEECCEEE---ECH--HH
Confidence 4667777 99999999999999888878888888876554 333332 4578896 56788755 455 45
Q ss_pred HHHHHHh
Q 005125 704 LEKSVKL 710 (713)
Q Consensus 704 ~~~~~~~ 710 (713)
|.+++++
T Consensus 75 l~~~~~~ 81 (85)
T d1egoa_ 75 FAAWVKE 81 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666653
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=96.03 E-value=0.011 Score=49.24 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=48.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhCC---CcEEEEEeCCCc------------------------HhhHHHcCCCc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRFP---SVNFLKVEVEDH------------------------PYIAKSEGVSS 680 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~p---~~~~~~v~~d~~------------------------~~~~~~~~v~~ 680 (713)
..+++.|++ |++|....|.+.++.+++. ++.++.+..++. ..+...|+|.+
T Consensus 27 K~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~ 106 (144)
T d1o8xa_ 27 KLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVES 106 (144)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCS
T ss_pred CEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCCCc
Confidence 455666888 9999999999999988872 477777776642 14667789999
Q ss_pred ccEEEEEE-C-CeEe
Q 005125 681 IPAFKIYK-N-GSRV 693 (713)
Q Consensus 681 ~Pt~~~~~-~-g~~~ 693 (713)
+|+++++. + |..+
T Consensus 107 ~Pt~~liD~~~G~Vi 121 (144)
T d1o8xa_ 107 IPTLIGVDADSGDVV 121 (144)
T ss_dssp SSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEE
Confidence 99999997 4 4443
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=96.00 E-value=0.018 Score=41.16 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=50.9
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCCCHHHHHHHHHh
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQCELLEKSVKL 710 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 710 (713)
+.+|.. |..|.++...+.+ . ..+.+..+|+++.+.+..+|+.+ +|.+. .+|+.. -.-++++++|.++|+.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~---~-~~~~~~~vdI~~d~~l~~~y~~~-IPVl~--~~~~~~-l~w~fd~~~l~~~L~~ 73 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ---A-RAGAFFSVFIDDDAALESAYGLR-VPVLR--DPMGRE-LDWPFDAPRLRAWLDA 73 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH---T-TCCCEEEEECTTCHHHHHHHTTT-CSEEE--CTTCCE-EESCCCHHHHHHHHHT
T ss_pred EEEECCCCccHHHHHHHHHHh---c-cCCcEEEEEccCCHHHHHHhCCe-eeEEE--ECCeeE-EcCccCHHHHHHHHhc
Confidence 455666 9999988776543 2 24788999999999999999866 89543 344322 2234699999999975
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.97 E-value=0.018 Score=41.15 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=51.4
Q ss_pred EEEeec-CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCC--CHHHHHHHH
Q 005125 633 VVLFCS-KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGH--QCELLEKSV 708 (713)
Q Consensus 633 vv~f~~-cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 708 (713)
+-+|.. |..|..+...+++..+..+ +..--..+++.+++. .|||.++|.+. .||+.+ +.|. +.++|.+||
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv~d~~ei~-~ygVmstPalv--Idg~vv--~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELG-IDAEFEKIKEMDQIL-EAGLTALPGLA--VDGELK--IMGRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEECSHHHHH-HHTCSSSSCEE--ETTEEE--ECSSCCCHHHHHHHC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcC-CceEEEEeCCHHHHH-HcCCcCCCEEE--ECCEEE--EEecCCCHHHHHHHh
Confidence 444555 9999999999999887763 332233446788887 59999999865 578765 4454 889999886
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=95.96 E-value=0.035 Score=45.22 Aligned_cols=95 Identities=14% Similarity=0.213 Sum_probs=72.3
Q ss_pred chhHHHHHhhcCCceEEEeec-CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCC--cccEEEEEEC-CeE
Q 005125 618 SNERFRHFVTSPGMAVVLFCS-KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVS--SIPAFKIYKN-GSR 692 (713)
Q Consensus 618 ~~~~~~~~l~~~~~~vv~f~~-cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~--~~Pt~~~~~~-g~~ 692 (713)
+.+.+........+.+++|+. -.+...+...|.++++++ ..+.|+.+|.++.+.....+|+. .+|.+.++.. +..
T Consensus 12 ~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~~~~~~ 91 (133)
T d2djka1 12 GPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp CHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred ChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEEcCCCc
Confidence 345666666666777777877 456788899999999998 67999999999999998999984 5898888753 333
Q ss_pred eeeec--CC-CHHHHHHHHHhhh
Q 005125 693 VKEIP--GH-QCELLEKSVKLYS 712 (713)
Q Consensus 693 ~~~~~--g~-~~~~~~~~~~~~~ 712 (713)
.-.++ +. +.+.|.+||+.+.
T Consensus 92 ~~~~~~~~~i~~~~i~~Fi~d~~ 114 (133)
T d2djka1 92 KFPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp BCCCCSSSCCCHHHHHHHHHHHH
T ss_pred eecCCccccCCHHHHHHHHHHHH
Confidence 33332 33 8999999998863
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.87 E-value=0.76 Score=43.38 Aligned_cols=181 Identities=12% Similarity=0.145 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005125 261 ELKFMGNEAYNKARFEDALALYDRAIAINSSKATYRSNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRL 340 (713)
Q Consensus 261 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 340 (713)
-.-..|..++..|.|+.|..+|... .-+..+..++..++++..|.+.+.++ ++...|..+...+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 4567788888999999999998753 12345567788899999999888776 4678888888888888
Q ss_pred CCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHH
Q 005125 341 GEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQ 420 (713)
Q Consensus 341 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 420 (713)
.+..-|..+ ...+. .+|+. .......+...|.+++.+..++..+...+.+. ..+..++.+|.+.+ .+
T Consensus 83 ~e~~la~i~-~~~~~-~~~d~---------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~-~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 83 KEFRLAQMC-GLHIV-VHADE---------LEELINYYQDRGYFEELITMLEAALGLERAHM-GMFTELAILYSKFK-PQ 149 (336)
T ss_dssp TCHHHHHHT-TTTTT-TCHHH---------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH-HHHHHHHHHHHTTC-HH
T ss_pred cHHHHHHHH-HHHhh-cCHHH---------HHHHHHHHHHcCChHHHHHHHHHHHcCCccch-HHHHHHHHHHHHhC-hH
Confidence 777655321 12122 33332 22344556678899999999999887766664 67777888777654 45
Q ss_pred HHHHHhhcc-ccCChhhHHhhhcccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005125 421 EAHDSYNKS-PKFCLEYYTKLFGLAGGAYLLIVRAQVYIAAGRFEDAVKTA 470 (713)
Q Consensus 421 ~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 470 (713)
+-+++++.. ...++...-... .....|-.+..+|.+.|++++|+...
T Consensus 150 kl~e~l~~~s~~y~~~k~~~~c---~~~~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 150 KMREHLELFWSRVNIPKVLRAA---EQAHLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHH---HTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHH---HHcCChHHHHHHHHhcCCHHHHHHHH
Confidence 555555542 333333211111 12223556778888899998887654
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.027 Score=45.19 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=71.9
Q ss_pred hhHHHHHhhcCCceEEEeecC-chhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCc-ccEEEEEEC-CeEee
Q 005125 619 NERFRHFVTSPGMAVVLFCSK-AEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSS-IPAFKIYKN-GSRVK 694 (713)
Q Consensus 619 ~~~~~~~l~~~~~~vv~f~~c-g~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~-~Pt~~~~~~-g~~~~ 694 (713)
.+.+...+....+.+++|+.- .....+...+.+++++| +.+.|+.+|.++...+.+.+|+.. .|.+.++.. ....-
T Consensus 7 ~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~~~ky 86 (125)
T d2b5ea3 7 GSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKY 86 (125)
T ss_dssp HHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEEE
T ss_pred HHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecccCccc
Confidence 346777777777777788883 46678899999999998 669999999999999999999865 899988764 22222
Q ss_pred eec-------------CC-CHHHHHHHHHhhh
Q 005125 695 EIP-------------GH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 ~~~-------------g~-~~~~~~~~~~~~~ 712 (713)
.++ +. +.+.|.+|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l 118 (125)
T d2b5ea3 87 GLPQLSEEAFDELSDKIVLESKAIESLVKDFL 118 (125)
T ss_dssp ECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHH
T ss_pred ccchhhhhhcccccccccCCHHHHHHHHHHHH
Confidence 221 33 8999999998873
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=95.69 E-value=0.02 Score=49.47 Aligned_cols=83 Identities=12% Similarity=0.245 Sum_probs=56.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCC--CcH---hhHHH-----------------------cC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVE--DHP---YIAKS-----------------------EG 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d--~~~---~~~~~-----------------------~~ 677 (713)
..+++.|++ |++|....+.+.++...+ ..+.++.|.++ ... ..... ++
T Consensus 57 K~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 136 (176)
T d1jfua_ 57 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGR 136 (176)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTC
T ss_pred CEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhhcc
Confidence 456666777 999999999999888765 44555555543 211 11222 24
Q ss_pred CCcccEEEEE-ECCeEeeeecCC---CHHHHHHHHHhhh
Q 005125 678 VSSIPAFKIY-KNGSRVKEIPGH---QCELLEKSVKLYS 712 (713)
Q Consensus 678 v~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 712 (713)
|.++|++.++ ++|..+.++.|. +.+++.+.|+...
T Consensus 137 v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~ 175 (176)
T d1jfua_ 137 ALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 175 (176)
T ss_dssp CSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence 5568987766 468898999886 6688988888754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=1.3 Score=43.81 Aligned_cols=279 Identities=11% Similarity=-0.022 Sum_probs=167.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 005125 254 LNKLDPEELKFMGNEAYNKARFEDALALYDRAIAINSSK------------------ATYRSNKSAALIGLGRQIEALVE 315 (713)
Q Consensus 254 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~la~~~~~~g~~~~A~~~ 315 (713)
..|.+.+.-+..+.+....|+.++|...+..+....... ...+..+.......|++..|...
T Consensus 97 ~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l 176 (450)
T d1qsaa1 97 EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVL 176 (450)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHH
Confidence 567888888899999999999999998887776543222 23334455556666776666555
Q ss_pred HHHH-------------HHhCC-----------CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHH
Q 005125 316 CKEA-------------IRIDP-----------CYHR--AHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALH 369 (713)
Q Consensus 316 ~~~a-------------l~~~p-----------~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 369 (713)
+..+ +..+| .+.. .+...+..-....+.+.|...+..... ..+........
T Consensus 177 ~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~-~~~~~~~~~~~-- 253 (450)
T d1qsaa1 177 AGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQ-AQQLNEDQIQE-- 253 (450)
T ss_dssp HHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HTTCCHHHHHH--
T ss_pred HhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhh-cccccHHHHHH--
Confidence 4321 11122 1111 112233333334566666666666544 33322211111
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYL 449 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (713)
.....+......+....+............+. ......++ ..+..+++..+...+...... +. ..+..
T Consensus 254 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~w~~~-~al~~~~~~~~~~~~~~l~~~-~~---------~~~r~ 321 (450)
T d1qsaa1 254 LRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVR-MALGTGDRRGLNTWLARLPME-AK---------EKDEW 321 (450)
T ss_dssp HHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHH-HHHHHTCHHHHHHHHHHSCTT-GG---------GSHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhhcccccch-HHHHHHHH-HHHHcCChHHHHHHHHhcCcc-cc---------cHHHH
Confidence 11111222223355566666666655544433 23333333 456678999999988876432 21 24567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcccH
Q 005125 450 LIVRAQVYIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAK--------------------AMASARLRGNLLFKASKY 509 (713)
Q Consensus 450 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--------------------~~~~~~~lg~~~~~~g~~ 509 (713)
.|-+|..+...|+.++|...|..+.. .++ .|..+.... ........+..++..|+.
T Consensus 322 ~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~---fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~ 397 (450)
T d1qsaa1 322 RYWQADLLLERGREAEAKEILHQLMQ-QRG---FYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLD 397 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-SCS---HHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHhc-CCC---hHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCc
Confidence 88999999999999999999998864 232 222211110 011223567788899999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005125 510 KEACYAYSEGLEHEAYNSVLLCNRAACRSKLGQYEKAVEDCTAA 553 (713)
Q Consensus 510 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 553 (713)
.+|...+..++... +..-...+|.+..+.|.++.|+....++
T Consensus 398 ~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 398 NTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 99999988887543 4667778899999999999999877765
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=95.36 E-value=0.021 Score=49.80 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=56.7
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC-CCcEEEEEeCC-----------------------------CcHhhHHHcC
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVE-----------------------------DHPYIAKSEG 677 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d-----------------------------~~~~~~~~~~ 677 (713)
..+++.||+ |++|+...|.+.++.++| .++.++.+... ....++..|+
T Consensus 33 k~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~~ 112 (187)
T d2cvba1 33 PLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYR 112 (187)
T ss_dssp SEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTT
T ss_pred CeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccccc
Confidence 455666888 999999999999999998 45677777531 1225778889
Q ss_pred CCcccEEEEEE-CCeEeee--ec---CC----CHHHHHHHHHhh
Q 005125 678 VSSIPAFKIYK-NGSRVKE--IP---GH----QCELLEKSVKLY 711 (713)
Q Consensus 678 v~~~Pt~~~~~-~g~~~~~--~~---g~----~~~~~~~~~~~~ 711 (713)
|..+|++.++. +|+.+.+ |- +. +...|++.|+..
T Consensus 113 v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~l 156 (187)
T d2cvba1 113 ALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 156 (187)
T ss_dssp CCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred ccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHH
Confidence 99999888775 4666532 21 11 234577766654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.28 E-value=0.83 Score=43.13 Aligned_cols=225 Identities=12% Similarity=-0.034 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 005125 297 SNKSAALIGLGRQIEALVECKEAIRIDPCYHRAHHRLAMLYFRLGEAEKAVSHYKKSSSLANQKDIAKAEALHKHLTKCN 376 (713)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 376 (713)
-..|..+...|.|+.|...|... .-+..+..++..+++++.|.+++.++-. + ..+.....
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~~~---~---------~~~k~~~~ 77 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS---T---------RTWKEVCF 77 (336)
T ss_dssp -----------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTC---H---------HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHcCC---H---------HHHHHHHH
Confidence 34677777888888888888743 2245566788889999999888876533 1 22333333
Q ss_pred HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHccCHHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHHHH
Q 005125 377 EARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLRLQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRAQV 456 (713)
Q Consensus 377 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~ 456 (713)
...+.....-+ .++....-..+.-...+...|...|.+++.+.+++.++...+. ....+..++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~----------~~~~~~~L~~l 142 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA----------HMGMFTELAIL 142 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC----------CHHHHHHHHHH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCcc----------chHHHHHHHHH
Confidence 33333333322 1111111111233345567788889999999999988876553 34467778887
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005125 457 YIAAGRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLFKASKYKEACYAYSEGLEHEAYNSVLLCNRAAC 536 (713)
Q Consensus 457 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 536 (713)
|.+.+ .++-+++++..- +.-+.. ..+........+..+..+|.+.|++++|+...-. +|.++.-....-.+
T Consensus 143 yak~~-~~kl~e~l~~~s--~~y~~~--k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~e~ 213 (336)
T d1b89a_ 143 YSKFK-PQKMREHLELFW--SRVNIP--KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFKDI 213 (336)
T ss_dssp HHTTC-HHHHHHHHHHHS--TTSCHH--HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHHHH
T ss_pred HHHhC-hHHHHHHHHhcc--ccCCHH--HHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHHHH
Confidence 76643 444444443321 111111 1111111112223566677778888877765433 22222222333344
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 005125 537 RSKLGQYEKAVEDCTAALIVMPSYSKARL 565 (713)
Q Consensus 537 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 565 (713)
+.+..+.+...+...-.++..|+.....+
T Consensus 214 ~~k~~N~e~~~~~i~~yL~~~p~~i~~lL 242 (336)
T d1b89a_ 214 ITKVANVELYYRAIQFYLEFKPLLLNDLL 242 (336)
T ss_dssp HHHCSSTHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHccCChHHHHHHHHHHHHcCHHHHHHHH
Confidence 56666666666666655666666544443
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.044 Score=46.75 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=55.6
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCc---------------------------------------
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDH--------------------------------------- 669 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~--------------------------------------- 669 (713)
.+|++|.. |+.|+.+.+.++++...+ .+.+..++....
T Consensus 38 ~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (169)
T d1v58a1 38 VIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPANV 116 (169)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSSC
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccchh
Confidence 45666777 999999999998887664 565655544311
Q ss_pred -----------HhhHHHcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHH
Q 005125 670 -----------PYIAKSEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSV 708 (713)
Q Consensus 670 -----------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 708 (713)
..++..+||.++|||++...+..+..++|. +.+.|.+.+
T Consensus 117 ~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il 167 (169)
T d1v58a1 117 STEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIM 167 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence 124455688899998887765667889999 888887765
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.55 E-value=0.019 Score=44.58 Aligned_cols=62 Identities=13% Similarity=0.257 Sum_probs=45.3
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHh-----hHHHcCCCcccEEEEEECCeEee
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPY-----IAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~-----~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..|++|.. |+.|..+..+|.++-..++.+.+..+|.+..+. +....|..++|. +|.+|+-++
T Consensus 12 ~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPq--Ifi~g~~IG 80 (105)
T d1ktea_ 12 GKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPR--VFIGKECIG 80 (105)
T ss_dssp TCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCE--EEETTEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcE--EEECCEEEe
Confidence 34666776 999999999998876666667788888776542 333457788996 467887654
|
| >d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.92 E-value=0.23 Score=37.25 Aligned_cols=84 Identities=17% Similarity=0.329 Sum_probs=60.6
Q ss_pred cCCceEEEeec--CchhHHHHHHHHHHHHhC---CCcEEEEEeCCCcHhhHH----HcCCCc-ccEEEEEE---CCeEee
Q 005125 628 SPGMAVVLFCS--KAEHKQVLQLMEQVCKRF---PSVNFLKVEVEDHPYIAK----SEGVSS-IPAFKIYK---NGSRVK 694 (713)
Q Consensus 628 ~~~~~vv~f~~--cg~c~~~~~~~~~l~~~~---p~~~~~~v~~d~~~~~~~----~~~v~~-~Pt~~~~~---~g~~~~ 694 (713)
..+..++.|.. -.+-.+|.+++.++++.+ |+..|++||+|++|.+.. .|+|+- -|.+-+.. .....-
T Consensus 18 ~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~PqIGVVdv~dadSvW~ 97 (119)
T d1a8ya3 18 MDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWM 97 (119)
T ss_dssp BTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEEC
T ss_pred cCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCCCceeeEecccCcceee
Confidence 35677777887 478889999999999876 789999999999997654 466653 48776665 223334
Q ss_pred eecCC----CHHHHHHHHHhh
Q 005125 695 EIPGH----QCELLEKSVKLY 711 (713)
Q Consensus 695 ~~~g~----~~~~~~~~~~~~ 711 (713)
.+.+. +.++|++||+..
T Consensus 98 ~~~~~~d~~t~~~Le~WiedV 118 (119)
T d1a8ya3 98 EMDDEEDLPSAEELEDWLEDV 118 (119)
T ss_dssp C-------CCHHHHHHHHHHH
T ss_pred ecccccccccHHHHHHHHHHh
Confidence 45443 789999999864
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=92.85 E-value=0.21 Score=42.25 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=25.1
Q ss_pred HcCCCcccEEEEEECCeEeeeecCC-CHHHHHHHHHh
Q 005125 675 SEGVSSIPAFKIYKNGSRVKEIPGH-QCELLEKSVKL 710 (713)
Q Consensus 675 ~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 710 (713)
.+||.++|||++ +|+. ++|. +.++|.++|++
T Consensus 141 ~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id~ 172 (172)
T d1z6ma1 141 AAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK 172 (172)
T ss_dssp HHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred HcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHcC
Confidence 378999999754 8875 5678 99999999874
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.48 E-value=0.74 Score=34.68 Aligned_cols=94 Identities=12% Similarity=0.234 Sum_probs=63.7
Q ss_pred eeecchhHHHHHhhcC-CceEEEeecCchhHHHHHHHHHHHHhC-CCcEEEEEeCCCcHhhHHHcCCCcccEEEEEEC-C
Q 005125 614 VFVSSNERFRHFVTSP-GMAVVLFCSKAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKN-G 690 (713)
Q Consensus 614 ~~~~~~~~~~~~l~~~-~~~vv~f~~cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~-g 690 (713)
..+.+..+...++... ..+|+-|..-. -......|..++..+ +++.|..+. .+.++..+||. .|++++|+. .
T Consensus 2 ~~i~~~~e~~~F~~~~d~v~VvGfF~~~-~~~~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlfr~fd 76 (102)
T d1a8ya2 2 ELIEGERELQAFENIEDEIKLIGYFKNK-DSEHYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFYEAFM 76 (102)
T ss_dssp EEECSHHHHHHHTTCCSSCEEEEECSST-TCHHHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEECTTC
T ss_pred eeecCHHHHHHHhccCCCEEEEEEECCC-CcHHHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCCC-CCCEEEeeecC
Confidence 3456667777777644 44555566521 122345556666554 778888776 47888999995 799999985 3
Q ss_pred eEeeeecCC--CHHHHHHHHHhhh
Q 005125 691 SRVKEIPGH--QCELLEKSVKLYS 712 (713)
Q Consensus 691 ~~~~~~~g~--~~~~~~~~~~~~~ 712 (713)
+....++|. +.+.|.+||+...
T Consensus 77 e~~~~~~~~~~t~~~i~~Fi~~n~ 100 (102)
T d1a8ya2 77 EEPVTIPDKPNSEEEIVNFVEEHR 100 (102)
T ss_dssp SSEEECSSSSCCHHHHHHHHHHTC
T ss_pred CCceecCCCCCCHHHHHHHHHHhc
Confidence 334556775 8999999998764
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=92.36 E-value=0.26 Score=35.67 Aligned_cols=55 Identities=13% Similarity=0.326 Sum_probs=39.0
Q ss_pred EEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhh----HHHcCCCcccEEEEEECCeEee
Q 005125 633 VVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYI----AKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 633 vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
|.+|.. |+.|..+..+|++. ++.|..+|++..+.. ....|..++|.+ |.+|+-++
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i--~i~~~~IG 63 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHIG 63 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEEE
T ss_pred EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeE--EECCEEEe
Confidence 556666 99999999888664 355677777766543 444588899964 67887654
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=92.11 E-value=0.28 Score=41.73 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCC-CcEEEEEe
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFP-SVNFLKVE 665 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p-~~~~~~v~ 665 (713)
....|+.|.. |+.|+.+.+.+..+.++++ ++.+....
T Consensus 18 ~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~ 57 (181)
T d1beda_ 18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNH 57 (181)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEe
Confidence 3557777777 9999999999999998885 45554443
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.6 Score=35.87 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=64.2
Q ss_pred eecchhHHHHHhhcCCceEEEeecCchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEee
Q 005125 615 FVSSNERFRHFVTSPGMAVVLFCSKAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~vv~f~~cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
.+.+......++......|+-|..-. -......|..++..+.+..|..+.. +.++..+++.. |++++|+......
T Consensus 4 ~l~~~~~~e~f~~~~~v~VVGfF~~~-~~~~~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~~-~~Ivl~k~~de~~ 78 (110)
T d1bjxa_ 4 TLPDGAAAESLVESSEVAVIGFFKDV-ESDSAKQFLQAAEAIDDIPFGITSN---SDVFSKYQLDK-DGVVLFKKFDEGR 78 (110)
T ss_dssp ECCSHHHHHHHHHHSSEEEEEECTTT-TSHHHHHHHHHHHHCSSSCEEEECC---SHHHHHTTCSS-CEEEEEESSSSSB
T ss_pred EcCCHHHHHHHhccCCeEEEEEEcCC-CchHHHHHHHHHHhCcCceEEEECC---HHHHHHcCCCC-CeEEEeccCCccc
Confidence 34556677777776766666676632 2234456677777777778877764 45778888865 9999999754333
Q ss_pred -eecCC-CHHHHHHHHHhhh
Q 005125 695 -EIPGH-QCELLEKSVKLYS 712 (713)
Q Consensus 695 -~~~g~-~~~~~~~~~~~~~ 712 (713)
.+.|. +.+.|.+||+..+
T Consensus 79 ~~~~~~~~~~~l~~fi~~~~ 98 (110)
T d1bjxa_ 79 NNFEGEVTKENLLDFIKHNQ 98 (110)
T ss_dssp CCCCSCCCHHHHHHHHHHHS
T ss_pred cccCCCCCHHHHHHHHHHcC
Confidence 34555 9999999998764
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=91.08 E-value=0.34 Score=34.18 Aligned_cols=57 Identities=12% Similarity=0.325 Sum_probs=38.6
Q ss_pred ceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcH---hhHHHcCCCcccEEEEEECCeEee
Q 005125 631 MAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHP---YIAKSEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 631 ~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~---~~~~~~~v~~~Pt~~~~~~g~~~~ 694 (713)
..|++|.. |+.|..+..+|.+. ++.|..++++..+ .+....+..++|. +|.+|+.++
T Consensus 5 ~~I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~--i~i~g~~IG 66 (74)
T d1nm3a1 5 ESISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQ--VFIGGKHIG 66 (74)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCE--EEETTEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCE--EEECCEEEE
Confidence 34677777 99999999998765 2444555555443 3444567889996 466886654
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.66 E-value=0.41 Score=36.78 Aligned_cols=58 Identities=19% Similarity=0.368 Sum_probs=40.0
Q ss_pred CceEEEeec-------CchhHHHHHHHHHHHHhCCCcEEEEEeCCCcHhhHH----HcCCCcccEEEEEECCeEee
Q 005125 630 GMAVVLFCS-------KAEHKQVLQLMEQVCKRFPSVNFLKVEVEDHPYIAK----SEGVSSIPAFKIYKNGSRVK 694 (713)
Q Consensus 630 ~~~vv~f~~-------cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 694 (713)
...|++|.. |+.|..+..+|.++ ++.+..+|+++.+.+.+ .-+..++|. +|.+|+-|+
T Consensus 14 ~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPq--IFi~g~~IG 82 (109)
T d1wika_ 14 KASVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQ--LYVRGDLVG 82 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCE--EECSSSEEE
T ss_pred cCCEEEEeCCCCCCCCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCCCCCCe--EEECCEEEc
Confidence 344555643 99999999888643 36677788888776544 346778885 667887554
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.03 E-value=6.6 Score=34.16 Aligned_cols=179 Identities=15% Similarity=0.063 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-ccCHHHHHHHhhccccCChhhHHhhhcccCcHH
Q 005125 370 KHLTKCNEARELKRWNDLLKETQNVISFGADSAPQVYALQAEALLR-LQRHQEAHDSYNKSPKFCLEYYTKLFGLAGGAY 448 (713)
Q Consensus 370 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (713)
..+.++....+.++|++.+...++++..+++-...-...+..+|-. .|....+...+............ ....
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~~------~~~~ 78 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEK------KQQM 78 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcch------hhHH
Confidence 3566778888899999999999999999998877767777766654 35566666555443221111100 0000
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HcccHHHHHHHHHHHhc---
Q 005125 449 LLIVRAQVYIAA-GRFEDAVKTAQDAAQIDPNNKEVIKGVKMAKAMASARLRGNLLF---KASKYKEACYAYSEGLE--- 521 (713)
Q Consensus 449 ~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~--- 521 (713)
+....-.+-..+ .--.+.+......+--...+++....+.+.. ...++.++.+.. +..-.+.|...|++|++
T Consensus 79 i~~yk~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~Kmk-gDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~ 157 (230)
T d2o02a1 79 AREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK-GDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISK 157 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhc-ccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 0112333333333322334444443322211 111222222211 11223578888888775
Q ss_pred --cCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 005125 522 --HEAYNSV---LLCNRAAC-RSKLGQYEKAVEDCTAALI 555 (713)
Q Consensus 522 --~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~ 555 (713)
+.|.+|. ...|.+.. |.-+|+.++|++..++|+.
T Consensus 158 ~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 158 KEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555543 34455544 4568999999999888775
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.29 E-value=2.6 Score=34.43 Aligned_cols=83 Identities=7% Similarity=0.048 Sum_probs=52.7
Q ss_pred CceEEE-ee-c--CchhHHHHHHHHHHHHhC-CCcEEEEEeCCCc---------------------HhhHHHcCCCccc-
Q 005125 630 GMAVVL-FC-S--KAEHKQVLQLMEQVCKRF-PSVNFLKVEVEDH---------------------PYIAKSEGVSSIP- 682 (713)
Q Consensus 630 ~~~vv~-f~-~--cg~c~~~~~~~~~l~~~~-p~~~~~~v~~d~~---------------------~~~~~~~~v~~~P- 682 (713)
+..+++ |+ . |+.|..-.+-|.+...++ ....++-|..|.. ..++..||+...|
T Consensus 33 ~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~ 112 (156)
T d2a4va1 33 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL 112 (156)
T ss_dssp CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred ccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCcccc
Confidence 444444 44 3 999998888887777666 3455666766543 2455667776655
Q ss_pred -----EEEEEECCeEeeeecCCC--------HHHHHHHHHhhh
Q 005125 683 -----AFKIYKNGSRVKEIPGHQ--------CELLEKSVKLYS 712 (713)
Q Consensus 683 -----t~~~~~~g~~~~~~~g~~--------~~~~~~~~~~~~ 712 (713)
++++..+|+.+.+..|.. .++|.++|++..
T Consensus 113 ~~~~r~~~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~l~ 155 (156)
T d2a4va1 113 SGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 155 (156)
T ss_dssp SCBCCEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEEEEECCeEEEEEEEeCCCCCcchHHHHHHHHHHHhc
Confidence 455568999887766652 235666666553
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.03 E-value=8.3 Score=33.49 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=30.2
Q ss_pred HHHHHHHhhccccCChhhHHhhhcccCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q 005125 419 HQEAHDSYNKSPKFCLEYYTKLFGLAGGAYLLIVRA-QVYIAAGRFEDAVKTAQDAAQ 475 (713)
Q Consensus 419 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~ 475 (713)
.+.|...|++|+.+........ . +....+..+.+ ..|.-.++.++|++..++|+.
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t-~-pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPT-H-PIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-C-HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-c-hHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467788888765432211100 0 00111223333 344558999999998888875
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.09 E-value=1.9 Score=37.77 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCceEEEeec--CchhHHHHHHHHHHHHhCCCcEEEEEeCCC---------c--H-------hhHHHcCCCcccEEEEEE
Q 005125 629 PGMAVVLFCS--KAEHKQVLQLMEQVCKRFPSVNFLKVEVED---------H--P-------YIAKSEGVSSIPAFKIYK 688 (713)
Q Consensus 629 ~~~~vv~f~~--cg~c~~~~~~~~~l~~~~p~~~~~~v~~d~---------~--~-------~~~~~~~v~~~Pt~~~~~ 688 (713)
...+|.+|++ |..|-.+..++.++.+. ++++.+...+|. + + ..+..++...+||-.+..
T Consensus 5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv 83 (225)
T d2axoa1 5 VKGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL 83 (225)
T ss_dssp CCCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence 3456667888 99999999999999876 788888888762 1 2 245567888888877788
Q ss_pred CCeEeeeecCCCHHHHHHHHHhh
Q 005125 689 NGSRVKEIPGHQCELLEKSVKLY 711 (713)
Q Consensus 689 ~g~~~~~~~g~~~~~~~~~~~~~ 711 (713)
+|.. ...|.+.+.+...|..+
T Consensus 84 nG~~--~~~gs~~~~~~~~i~~~ 104 (225)
T d2axoa1 84 NGRD--HVKGADVRGIYDRLDAF 104 (225)
T ss_dssp TTTE--EEETTCHHHHHHHHHHH
T ss_pred eCcc--cccccCHHHHHHHHHHH
Confidence 8864 45677888888877654
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.18 E-value=1.3 Score=37.52 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=29.9
Q ss_pred CceEEEeec--CchhHHHHHHHHHHHHhC--CCcEEEEEeCCCc
Q 005125 630 GMAVVLFCS--KAEHKQVLQLMEQVCKRF--PSVNFLKVEVEDH 669 (713)
Q Consensus 630 ~~~vv~f~~--cg~c~~~~~~~~~l~~~~--p~~~~~~v~~d~~ 669 (713)
..+++++++ ||.|.+--+-|+++.++| .+..++-++++..
T Consensus 25 KvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF 68 (184)
T d2f8aa1 25 KVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF 68 (184)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCS
T ss_pred CEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecccc
Confidence 445556888 999998788899998887 2577777766643
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.39 E-value=4.3 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005125 527 SVLLCNRAACRSKLGQYEKAVEDCTAALIVMPSYSKARLEAAIQDYEMLIREIPGNEEVGRAL 589 (713)
Q Consensus 527 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~A~~~~~~al~~~p~~~~~~~~l 589 (713)
+-.+...|.-+...|+|++|++++++|. .++..|+++ +.+..+...|
T Consensus 8 AH~~~RrAer~l~~~rydeAIech~kA~---------------~yl~eA~kl-t~s~~~l~SL 54 (83)
T d2crba1 8 AHQQSRRADRLLAAGKYEEAISCHRKAT---------------TYLSEAMKL-TESEQAHLSL 54 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHHHTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHHHhC-CCcHHHHHHH
Confidence 3456677888899999999999988754 456777776 6666655543
|
| >d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: KaiB-like domain: Adaptive-response sensory-kinase SasA, N-terminal domain species: Synechococcus elongatus [TaxId: 32046]
Probab=80.38 E-value=5.6 Score=29.43 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=54.0
Q ss_pred ceEEEeec-CchhHHHHHHHHHHHHhC-CC--cEEEEEeCCCcHhhHHHcCCCcccEEEEEECCeEeeeecCCC-HHHHH
Q 005125 631 MAVVLFCS-KAEHKQVLQLMEQVCKRF-PS--VNFLKVEVEDHPYIAKSEGVSSIPAFKIYKNGSRVKEIPGHQ-CELLE 705 (713)
Q Consensus 631 ~~vv~f~~-cg~c~~~~~~~~~l~~~~-p~--~~~~~v~~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~-~~~~~ 705 (713)
..+.+|.+ -........-+.++++.+ ++ +.+--||+-+.|++++.+.|-.+||++= .......++.|.+ .+.+.
T Consensus 13 l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK-~~P~P~q~l~Gs~i~~ql~ 91 (105)
T d1t4za_ 13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVK-IGPGSRQVLSGIDLTDQLA 91 (105)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEE-EESSCCEEEESSCHHHHHH
T ss_pred eEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhh-cCCCcceeecChhHHHHHh
Confidence 44555666 222333344456666654 33 6778889999999999999999999762 2356667888984 47777
Q ss_pred HHHHh
Q 005125 706 KSVKL 710 (713)
Q Consensus 706 ~~~~~ 710 (713)
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T Consensus 92 ~w~pr 96 (105)
T d1t4za_ 92 NQLPQ 96 (105)
T ss_dssp HHHHH
T ss_pred hhhhH
Confidence 77643
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